Faculty of Catholic Theology
- Institute of Biblical Theology
- Institute of Historical Theology
- Institute of Systematic Theology
- Institute of Practical Theology
Faculty of Law
- Institute of Social, Tax and Industrial Law
- Institute of History of Law
- Institute of Civil Law and Civil Procedural Law
- Institute of International Law, European Law and European Private Law
- Institute of Criminal Law and Criminaology
- Institute of State Studies, Administrative Law and Philosophy of Law
Faculty of Medicine
- Department of Anaesthesiology (former Klinik für Anaesthesiologie)
- Department of Ophthalmology
- Department of Surgery I
- Department of Obstetrics and Gynecology
- Department of Otorhinolaryngology
- Department of Dermatology
- Department of Cardiothoracic Surgery
- Department of Pediatrics
- Institute of Clinical Biochemistry and Pathobiochemistry
- Department of Internal Medicine I (former Medizinische Klinik)
- Institute for Clinical Neurobiology
- Department of Internal Medicine II (former Medizinische Poliklinik)
- Department of Child and Adolescent Psychiatry and Psychotherapy
- Department of Neurosurgery
- Department of Nuclear Medicine
- Department of Radiology
- Department of Radiation Oncology
- Department of Urology
- Department of Dentistry, Oral and Maxillofacial Surgery
- Institute of Hygiene and Microbiology
- Institute of Psychotherapy and Medical Psychology
- Institute of Legal Medicine
- Institute of Pathology
- Institute of Pharmacology and Toxicology
- Institute of Virology and Immunobiology
- Institute of Anatomy and Cell Biology
- Department of Human Genetics
- Department of Physiology
- Theodor-Boveri-Institute of Biosciences
- Institute for the History of Medicine
- Institute for Medical Radiation and Cell Research
- Institute for Molecular Biology of Infectious Diseases
- Department of Neurology
- Department of Orthopaedic Surgery
- Department of Oral and Maxillofacial Surgery
- Department of Orthodontics
- Department of Prosthodontics
- Department of Operative Dentistry and Periodontology
- Department of Psychiatry and Psychotherapy
- Hospital of Psychiatry, Psychotherapy and Neurology of Unterfranken
- Department of Molecular Internal Medicine
- Medical Mission Hospital
- Department of Anaesthesiology
- Department of Surgery II
- Department of Dermatology, Venereology and Allergology
- Department of Internal Medicine I
- Department of Internal Medicine II
Faculty of Biology
- Julius-von-Sachs-Institute of Biosciences
- Theodor-Boveri-Institute of Biosciences
- Dissertation Institute for Molecular Biology of Infectious Diseases
- Dissertation Institute of Anatomy and Cell Biology
- Dissertation Institute of Hygiene and Microbiology
- Dissertation Institute of Pharmacy and Food Chemistry
- Dissertation Institute of Virology and Immunobiology
- Dissertation Institute for Medical Radiation and Cell Research
- Dissertation Department of Human Genetics
- Rudolf-Virchow Center
- Dissertation Institute of Clinical Biochemistry and Pathobiochemistry
- Dissertation Department of Internal Medicine I
Faculty of Arts II
- Institute of Philosophy
- Institute of Psychology
- Institute of Educational Science
- Institute of Special Educational Science
- Institute of Political Science and Social Research
- Institute of Protestant Theology and Religious Education
- Institute of Sports Science
Faculty of Arts I
- Institute of Cassical Philology
- Institute of Cultural Studies of Eastern and Southern Asia
- Institute of Slavonic Studies
- Institute of Music
- Institute of Classical Studies
- Institute of German
- Institute of History
- Institute of Art History
- Institute of Modern Languages
- Institute of Geography and Geology
Faculty of Chemistry and Pharmacy
- Institute of Inorganic Chemistry
- Institute of Organic Chemistry
- Chair of Biochemistry
- Institute of Pharmacy and Food Chemistry
- Institute of Physical Chemistry
- Chair of Silicate Chemistry
- Chair for Chemical Technology of Materials Synthesis
Faculty of Mathematics and Computer Science
- Institute of Mathematics
- Institute of Computer Science
Faculty of Physics and Astronomy
- Institute of Physics
- Institute of Theoretical Physics and Astrophysics
Faculty of Business Administration and Economics
- Institute of Economics
- Institute of Business Administration
Faculty of Arts I (until Sept. 2007)
- Institute of Cassical Philology
- Institute of Archaeology
- Institute of Egyptology
- Institute of Oriental Philology
- Institute of Cultural Studies of Eastern and Southern Asia
- Institute of Slavonic Studies
- Institute of Music
- Institute of Classical Studies
Faculty of Arts II (until Sept. 2007)
- Institute of German
- Institute of English Language and Literature
- Institute of Romance Philology
- Institute of History
- Institute of Art History
- Institute of Modern Languages
Faculty of Arts III (until Sept. 2007)
- Institute of Philosophy
- Institute of Psychology
- Institute of Educational Science
- Institute of Special Educational Science
- Institute of Sociology
- Institute of Political Science
- Institute of Protestant Theology and Religious Education
- Institute of Sports Science
- Chair of Religious History
Faculty of Geosciences (until Sept. 2007)
- Institute of Geography
- Institute of Geology
- Institute of Palaeontology
- Institute of Mineralogy
Central Service Institutions
- University Library
- IT Centre
- Language Centre
- Martin-von-Wagner-Museum
Graduate Schools
- Graduate School of Science and Technology
- Graduate School of the Humanities
- Graduate School of Life Sciences
University - Interdisciplinary
- University of Würzburg