@phdthesis{Klein2010, author = {Klein, Alexander}, title = {Performance Issues of MAC and Routing Protocols in Wireless Sensor Networks}, doi = {10.25972/OPUS-4465}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-52870}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2010}, abstract = {The focus of this work lies on the communication issues of Medium Access Control (MAC) and routing protocols in the context of WSNs. The communication challenges in these networks mainly result from high node density, low bandwidth, low energy constraints and the hardware limitations in terms of memory, computational power and sensing capabilities of low-power transceivers. For this reason, the structure of WSNs is always kept as simple as possible to minimize the impact of communication issues. Thus, the majority of WSNs apply a simple one hop star topology since multi-hop communication has high demands on the routing protocol since it increases the bandwidth requirements of the network. Moreover, medium access becomes a challenging problem due to the fact that low-power transceivers are very limited in their sensing capabilities. The first contribution is represented by the Backoff Preamble-based MAC Protocol with Sequential Contention Resolution (BPS-MAC) which is designed to overcome the limitations of low-power transceivers. Two communication issues, namely the Clear Channel Assessment (CCA) delay and the turnaround time, are directly addressed by the protocol. The CCA delay represents the period of time which is required by the transceiver to detect a busy radio channel while the turnaround time specifies the period of time which is required to switch between receive and transmit mode. Standard Carrier Sense Multiple Access (CSMA) protocols do not achieve high performance in terms of packet loss if the traffic is highly correlated due to the fact that the transceiver is not able to sense the medium during the switching phase. Therefore, a node may start to transmit data while another node is already transmitting since it has sensed an idle medium right before it started to switch its transceiver from receive to transmit mode. The BPS-MAC protocol uses a new sequential preamble-based medium access strategy which can be adapted to the hardware capabilities of the transceivers. The protocol achieves a very low packet loss rate even in wireless networks with high node density and event-driven traffic without the need of synchronization. This makes the protocol attractive to applications such as structural health monitoring, where event suppression is not an option. Moreover, acknowledgments or complex retransmission strategies become almost unnecessary since the sequential preamble-based contention resolution mechanism minimizes the collision probability. However, packets can still be lost as a consequence of interference or other issues which affect signal propagation. The second contribution consists of a new routing protocol which is able to quickly detect topology changes without generating a large amount of overhead. The key characteristics of the Statistic-Based Routing (SBR) protocol are high end-to-end reliability (in fixed and mobile networks), load balancing capabilities, a smooth continuous routing metric, quick adaptation to changing network conditions, low processing and memory requirements, low overhead, support of unidirectional links and simplicity. The protocol can establish routes in a hybrid or a proactive mode and uses an adaptive continuous routing metric which makes it very flexible in terms of scalability while maintaining stable routes. The hybrid mode is optimized for low-power WSNs since routes are only established on demand. The difference of the hybrid mode to reactive routing strategies is that routing messages are periodically transmitted to maintain already established routes. However, the protocol stops the transmission of routing messages if no data packets are transmitted for a certain time period in order to minimize the routing overhead and the energy consumption. The proactive mode is designed for high data rate networks which have less energy constraints. In this mode, the protocol periodically transmits routing messages to establish routes in a proactive way even in the absence of data traffic. Thus, nodes in the network can immediately transmit data since the route to the destination is already established in advance. In addition, a new delay-based routing message forwarding strategy is introduced. The forwarding strategy is part of SBR but can also be applied to many routing protocols in order to modify the established topology. The strategy can be used, e.g. in mobile networks, to decrease the packet loss by deferring routing messages with respect to the neighbor change rate. Thus, nodes with a stable neighborhood forward messages faster than nodes within a fast changing neighborhood. As a result, routes are established through nodes with correlated movement which results in fewer topology changes due to higher link durations.}, subject = {Routing}, language = {en} } @article{EgetemeirStennekenKoehleretal.2011, author = {Egetemeir, Johanna and Stenneken, Prisca and Koehler, Saskia and Fallgatter, Andreas J. and Herrmann, Martin J.}, title = {Exploring the neural basis of real-life joint action: measuring brain activation during joint table setting with functional near-infrared spectroscopy}, series = {FRONTIERS IN HUMAN NEUROSCIENCE}, volume = {5}, journal = {FRONTIERS IN HUMAN NEUROSCIENCE}, number = {9, Artikel 95}, doi = {10.3389/fnhum.2011.00095}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-137054}, pages = {1-9}, year = {2011}, abstract = {Many every-day life situations require two or more individuals to execute actions together. Assessing brain activation during naturalistic tasks to uncover relevant processes underlying such real-life joint action situations has remained a methodological challenge. In the present study, we introduce a novel joint action paradigm that enables the assessment of brain activation during real-life joint action tasks using functional near-infrared spectroscopy (fNIRS). We monitored brain activation of participants who coordinated complex actions with a partner sitting opposite them. Participants performed table setting tasks, either alone (solo action) or in cooperation with a partner (joint action), or they observed the partner performing the task (action observation). Comparing joint action and solo action revealed stronger activation (higher [oxy-Hb]-concentration) during joint action in a number of areas. Among these were areas in the inferior parietal lobule (IPL) that additionally showed an overlap of activation during action observation and solo action. Areas with such a close link between action observation and action execution have been associated with action simulation processes. The magnitude of activation in these IPL areas also varied according to joint action type and its respective demand on action simulation. The results validate fNIRS as an imaging technique for exploring the functional correlates of interindividual action coordination in real-life settings and suggest that coordinating actions in real-life situations requires simulating the actions of the partner.}, language = {en} } @phdthesis{Backhaus2012, author = {Backhaus, Birte}, title = {K{\"o}nnen mit Virtual-Reality-Simulationstraining die manuellen Fertigkeiten interventioneller Kardiologen verbessert werden?}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-72654}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2012}, abstract = {Durch Fortschritte in der Technologie haben interventionelle Eingriffe am Herzen in den letzten Jahrzehnten einen herausragenden Stellenwert entwickelt und zu einer Reduktion von aufwendigen Operationen am Herzen gef{\"u}hrt. Die Ausbildung im Herzkatheterlabor, die nach dem konservativen „appreticeship-model" erfolgt, ger{\"a}t in Anbetracht der sinkenden finanziellen Mittel, Zeitmangel und der ethischen Fragen bez{\"u}glich Patientensicherheit immer mehr in Diskussion. Die Entwicklung der Virtual-Reality-Simulatoren f{\"u}r Kathetereingriffe bietet hier durch die Realit{\"a}tsn{\"a}he einen Ansatzpunkt f{\"u}r die M{\"o}glichkeit eines individuell angepassten, repetitiven Trainings ohne die Gef{\"a}hrdung eines Patienten. Standardsituationen als auch seltene Komplikationen k{\"o}nnen nachgestellt werden. Diese Studie weist nach, dass Training an den Virtual-Reality-Simulatoren CATHI und Immersion zu einer Risikoreduktioin bei der Durchf{\"u}hrung einer perkutanen Coronarintervention f{\"u}hrt. Zur Untersuchung der Effekte von Virtual-Reality-Training auf die Performance einer perkutanen Coronarintervention wurde an der medizinischen Klinik Wuerzburg eine kontrolliert-radnomisierte Studie mit 33 Anf{\"a}ngern in der interventionellen Kardiologie durchgef{\"u}hrt. 16 Teilnehmer (Simulationsgruppe) erhielten ein intensives acht-stuendiges Simulationstraining an zwei verschiedenen Virtual-Reality-Simulatoren (CATHI und Immersion), 17 Teilnehmer bildeten die Kontrollgruppe, die den konservativen Ausbildungsgang repr{\"a}sentierte und kein Simulationstraining erhielt. Alle Teilnehmer mussten in Form einer Pr{\"a}- und Postevaluation unter realit{\"a}tsnahen Umst{\"a}nden im Herzkatheterlabor der Uniklinik W{\"u}rzburg innerhalb von 30 Minuten eine perkutane Coronarintervention an einem pulsatilen Herzkreislaufmodell aus Silikon (CoroSim) eigenst{\"a}ndig vornehmen. Dabei musste eine an einer Aufteilung lokalisierte hochgradige Stenose ohne Abg{\"a}nge mit einer L{\"a}nge von 10mm und einem Gef{\"a}ßdurchmesser von 4mm er{\"o}ffnet werden. Die Ergebnisse zeigten f{\"u}r die Pr{\"a}evaluation keine gruppenspezifischen Unterschiede. Nach dem Simulationstraining zeigte sich eine signifikante Verbesserung der Simulationsgruppe bei der Risikominimierung in Bezug auf Sicherheit bei der Anwendung des F{\"u}hrungskatheters, des Koronardrahts, des Ballon/Stents und bei der KM-Injektion, w{\"a}hrend sich die Kontrollgruppe in diesen Punkten nicht verbessern konnte. Die aktuelle Studie zeigt, dass Training an den Virtual-Reality-Simulatoren, als Erg{\"a}nzung zur herk{\"o}mmlichen Ausbildung, ein hohes Potential f{\"u}r die Optimierung von interventionellen Herzkathetereingriffen verf{\"u}gt.}, subject = {Virtuelle Realitaet}, language = {de} } @article{HeddergottKruegerBabuetal.2012, author = {Heddergott, Niko and Kr{\"u}ger, Timothy and Babu, Sujin B. and Wei, Ai and Stellamanns, Erik and Uppaluri, Sravanti and Pfohl, Thomas and Stark, Holger and Engstler, Markus}, title = {Trypanosome Motion Represents an Adaptation to the Crowded Environment of the Vertebrate Bloodstream}, series = {PLoS Pathogens}, volume = {8}, journal = {PLoS Pathogens}, number = {11}, doi = {10.1371/journal.ppat.1003023}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-134595}, pages = {e1003023}, year = {2012}, abstract = {Blood is a remarkable habitat: it is highly viscous, contains a dense packaging of cells and perpetually flows at velocities varying over three orders of magnitude. Only few pathogens endure the harsh physical conditions within the vertebrate bloodstream and prosper despite being constantly attacked by host antibodies. African trypanosomes are strictly extracellular blood parasites, which evade the immune response through a system of antigenic variation and incessant motility. How the flagellates actually swim in blood remains to be elucidated. Here, we show that the mode and dynamics of trypanosome locomotion are a trait of life within a crowded environment. Using high-speed fluorescence microscopy and ordered micro-pillar arrays we show that the parasites mode of motility is adapted to the density of cells in blood. Trypanosomes are pulled forward by the planar beat of the single flagellum. Hydrodynamic flow across the asymmetrically shaped cell body translates into its rotational movement. Importantly, the presence of particles with the shape, size and spacing of blood cells is required and sufficient for trypanosomes to reach maximum forward velocity. If the density of obstacles, however, is further increased to resemble collagen networks or tissue spaces, the parasites reverse their flagellar beat and consequently swim backwards, in this way avoiding getting trapped. In the absence of obstacles, this flagellar beat reversal occurs randomly resulting in irregular waveforms and apparent cell tumbling. Thus, the swimming behavior of trypanosomes is a surprising example of micro-adaptation to life at low Reynolds numbers. For a precise physical interpretation, we compare our high-resolution microscopic data to results from a simulation technique that combines the method of multi-particle collision dynamics with a triangulated surface model. The simulation produces a rotating cell body and a helical swimming path, providing a functioning simulation method for a microorganism with a complex swimming strategy.}, language = {en} } @article{KoernerTopolinskiStrack2015, author = {K{\"o}rner, Anita and Topolinski, Sascha and Strack, Fritz}, title = {Routes to Embodiment}, series = {Frontiers of Psychology}, volume = {9}, journal = {Frontiers of Psychology}, number = {940}, doi = {10.3389/fpsyg.2015.00940}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-125960}, year = {2015}, abstract = {Research on embodiment is rich in impressive demonstrations but somewhat poor in comprehensive explanations. Although some moderators and driving mechanisms have been identified, a comprehensive conceptual account of how bodily states or dynamics influence behavior is still missing. Here, we attempt to integrate current knowledge by describing three basic psychological mechanisms: direct state induction, which influences how humans feel or process information, unmediated by any other cognitive mechanism; modal priming, which changes the accessibility of concepts associated with a bodily state; sensorimotor simulation, which affects the ease with which congruent and incongruent actions are performed. We argue that the joint impact of these mechanisms can account for most existing embodiment effects. Additionally, we summarize empirical tests for distinguishing these mechanisms and suggest a guideline for future research about the mechanisms underlying embodiment effects.}, language = {en} } @article{vanToorNewmanTakekawaetal.2016, author = {van Toor, Mari{\"e}lle L. and Newman, Scott H. and Takekawa, John Y. and Wegmann, Martin and Safi, Kamran}, title = {Temporal segmentation of animal trajectories informed by habitat use}, series = {Ecosphere}, volume = {7}, journal = {Ecosphere}, number = {10}, doi = {10.1002/ecs2.1498}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-164970}, pages = {e01498}, year = {2016}, abstract = {Most animals live in seasonal environments and experience very different conditions throughout the year. Behavioral strategies like migration, hibernation, and a life cycle adapted to the local seasonality help to cope with fluctuations in environmental conditions. Thus, how an individual utilizes the environment depends both on the current availability of habitat and the behavioral prerequisites of the individual at that time. While the increasing availability and richness of animal movement data has facilitated the development of algorithms that classify behavior by movement geometry, changes in the environmental correlates of animal movement have so far not been exploited for a behavioral annotation. Here, we suggest a method that uses these changes in individual-environment associations to divide animal location data into segments of higher ecological coherence, which we term niche segmentation. We use time series of random forest models to evaluate the transferability of habitat use over time to cluster observational data accordingly. We show that our method is able to identify relevant changes in habitat use corresponding to both changes in the availability of habitat and how it was used using simulated data, and apply our method to a tracking data set of common teal (Anas crecca). The niche segmentation proved to be robust, and segmented habitat suitability outperformed models neglecting the temporal dynamics of habitat use. Overall, we show that it is possible to classify animal trajectories based on changes of habitat use similar to geometric segmentation algorithms. We conclude that such an environmentally informed classification of animal trajectories can provide new insights into an individuals' behavior and enables us to make sensible predictions of how suitable areas might be connected by movement in space and time.}, language = {en} } @article{GrundgeigerAlbertReinhardtetal.2016, author = {Grundgeiger, T. and Albert, M. and Reinhardt, D. and Happel, O. and Steinisch, A. and Wurmb, T.}, title = {Real-time tablet-based resuscitation documentation by the team leader: evaluating documentation quality and clinical performance}, series = {Scandinavian Journal of Trauma, Resuscitation and Emergency Medicine}, volume = {24}, journal = {Scandinavian Journal of Trauma, Resuscitation and Emergency Medicine}, number = {51}, doi = {10.1186/s13049-016-0242-3}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-146582}, year = {2016}, abstract = {Background Precise and complete documentation of in-hospital cardiopulmonary resuscitations is important but data quality can be poor. In the present study, we investigated the effect of a tablet-based application for real-time resuscitation documentation used by the emergency team leader on documentation quality and clinical performance of the emergency team. Methods Senior anaesthesiologists either used the tablet-based application during the simulated resuscitation for documentation and also used the application for the final documentation or conducted the full documentation at the end of the scenario using the local hospital information system. The latter procedure represents the current local documentation method. All scenarios were video recorded. To assess the documentation, we compared the precision of intervention delivery times, documentation completeness, and final documentation time. To assess clinical performance, we compared adherence to guidelines for defibrillation and adrenaline administration, the no-flow fraction, and the time to first defibrillation. Results The results showed significant benefits for the tablet-based application compared to the hospital information system for precision of the intervention delivery times, the final documentation time, and the no-flow fraction. We observed no differences between the groups for documentation completeness, adherence to guidelines for defibrillation and adrenaline administration, and the time to first defibrillation. Discussion In the presented study, we observed that a tablet-based application can improve documentation data quality. Furthermore, we demonstrated that a well-designed application can be used in real-time by a member of the emergency team with possible beneficial effects on clinical performance. Conclusion The present evaluation confirms the advantage of tablet-based documentation tools and also shows that the application can be used by an active member of an emergency team without compromising clinical performance.}, language = {en} } @phdthesis{BolanosRosales2016, author = {Bola{\~n}os-Rosales, Alejandro}, title = {Low Mach Number Simulations of Convective Boundary Mixing in Classical Novae}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-132863}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2016}, abstract = {Classical novae are thermonuclear explosions occurring on the surface of white dwarfs. When co-existing in a binary system with a main sequence or more evolved star, mass accretion from the companion star to the white dwarf can take place if the companion overflows its Roche lobe. The envelope of hydrogen-rich matter which builds on top of the white dwarf eventually ignites under degenerate conditions, leading to a thermonuclear runaway and an explosion in the order of 1046 erg, while leaving the white dwarf intact. Spectral analyses from the debris indicate an abundance of isotopes that are tracers of nuclear burning via the hot CNO cycle, which in turn reveal some sort of mixing between the envelope and the white dwarf underneath. The exact mechanism is still a matter of debate. The convection and deflagration in novae develop in the low Mach number regime. We used the Seven League Hydro code (SLH ), which employs numerical schemes designed to correctly simulate low Mach number flows, to perform two and three- dimensional simulations of classical novae. Based on a spherically-symmetric model created with aid of a stellar evolution code, we developed our own nova model and tested it on a variety of numerical grids and boundary conditions for validation. We focused on the evolution of temperature, density and nuclear energy generation rate at the layers between white dwarf and envelope, where most of the energy is generated, to understand the structure of the transition region, and its effect on the nuclear burning. We analyzed the resulting dredge-up efficiency stemming from the convective motions in the envelope. Our models yield similar results to the literature, but seem to depend very strongly on the numerical resolution. We followed the evolution of the nuclear species involved in the CNO cycle and concluded that the thermonuclear reactions primarily taking place are those of the cold and not the hot CNO cycle. The reason behind this could be that under the conditions generally assumed for multi-dimensional simulations, the envelope is in fact not degenerate. We performed initial tests for 3D simulations and realized that alternative boundary conditions are needed.}, subject = {Nova}, language = {en} } @article{SarukhanyanShityakovDandekar2018, author = {Sarukhanyan, Edita and Shityakov, Sergey and Dandekar, Thomas}, title = {In silico designed Axl receptor blocking drug candidates against Zika virus infection}, series = {ACS Omega}, volume = {3}, journal = {ACS Omega}, number = {5}, doi = {10.1021/acsomega.8b00223}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-176739}, pages = {5281-5290}, year = {2018}, abstract = {After a large outbreak in Brazil, novel drugs against Zika virus became extremely necessary. Evaluation of virus-based pharmacological strategies concerning essential host factors brought us to the idea that targeting the Axl receptor by blocking its dimerization function could be critical for virus entry. Starting from experimentally validated compounds, such as RU-301, RU-302, warfarin, and R428, we identified a novel compound 2′ (R428 derivative) to be the most potent for this task amongst a number of alternative compounds and leads. The improved affinity of compound 2′ was confirmed by molecular docking as well as molecular dynamics simulation techniques using implicit solvation models. The current study summarizes a new possibility for inhibition of the Axl function as a potential target for future antiviral therapies.}, language = {en} } @article{McIlroyPassfieldHolmbergetal.2021, author = {McIlroy, Benjamin and Passfield, Louis and Holmberg, Hans-Christer and Sperlich, Billy}, title = {Virtual training of endurance cycling - A summary of strengths, weaknesses, opportunities and threats}, series = {Frontiers in Sports and Active Living}, volume = {3}, journal = {Frontiers in Sports and Active Living}, doi = {10.3389/fspor.2021.631101}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-258876}, year = {2021}, abstract = {Virtual online training has emerged as one of the top 20 worldwide fitness trends for 2021 and continues to develop rapidly. Although this allows the cycling community to engage in virtual training and competition, critical evaluation of virtual training platforms is limited. Here, we discuss the strengths, weaknesses, opportunities and threats associated with virtual training technology and cycling in an attempt to enhance awareness of such aspects. Strengths include immersive worlds, innovative drafting mechanics, and versatility. Weaknesses include questionable data accuracy, inadequate strength and reliability of power-speed algorithms. Opportunities exist for expanding strategic partnerships with major cycling races, brands, and sponsors and improving user experience with the addition of video capture and "e-coaching." Threats are present in the form of cheating during competition, and a lack of uptake and acceptance by a broader community.}, language = {en} }