@phdthesis{Lorenzin2016,
  author    = {Lorenzin, Francesca},
  title     = {Regulation of transcription by MYC - DNA binding and target genes},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-150766},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2016},
  abstract  = {MYC is a transcription factor, whose expression is elevated or deregulated in many human cancers (up to 70\%) and is often associated with aggressive and poorly differentiated tumors. Although MYC is extensively studied, discrepancies have emerged about how this transcription factor works. In primary lymphocytes, MYC promotes transcriptional amplification of virtually all genes with an open promoter, whereas in tumor cells MYC regulates specific sets of genes that have significant prognostic value. Furthermore, the set of target genes that distinguish MYC's physiological function from the pathological/oncogenic one, whether it exists or not, has not been fully understood yet. In this study, it could be shown that MYC protein levels within a cell and promoter affinity (determined by E-box presence or interaction with other proteins) of target genes toward MYC are important factors that influence MYC activity. At low levels, MYC can amplify a certain transcriptional program, which includes high affinity binding sites, whereas at high levels MYC leads to the specific up- and down regulation of genes with low affinity. Moreover, the promoter affinity characterizes different sets of target genes which can be distinguished in the physiological or oncogenic MYC signatures. MYC-mediated repression requires higher MYC levels than activation and formation of a complex with MIZ1 is necessary for inhibiting expression of a subset of MYC target genes.},
  subject      = {MYC},
  language  = {en}
}
@phdthesis{Jung2016,
  author    = {Jung, Lisa Anna},
  title     = {Targeting MYC Function as a Strategy for Tumor Therapy},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-146993},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2016},
  abstract  = {A large fraction of human tumors exhibits aberrant expression of the oncoprotein MYC. As a transcription factor regulating various cellular processes, MYC is also crucially involved in normal development. Direct targeting of MYC has been a major challenge for molecular cancer drug discovery. The proof of principle that its inhibition is nevertheless feasible came from in vivo studies using a dominant-negative allele of MYC termed OmoMYC. Systemic expression of OmoMYC triggered long-term tumor regression with mild and fully reversible side effects on normal tissues. In this study, OmoMYC's mode of action was investigated combining methods of structural biology and functional genomics to elucidate how it is able to preferentially affect oncogenic functions of MYC. The crystal structure of the OmoMYC homodimer, both in the free and the E-box-bound state, was determined, which revealed that OmoMYC forms a stable homodimer, and as such, recognizes DNA via the same base-specific DNA contacts as the MYC/MAX heterodimer. OmoMYC binds DNA with an equally high affinity as MYC/MAX complexes. RNA-sequencing showed that OmoMYC blunts both MYC-dependent transcriptional activation and repression. Genome-wide DNA-binding studies using chromatin immunoprecipitation followed by high-throughput sequencing revealed that OmoMYC competes with MYC/MAX complexes on chromatin, thereby reducing their occupancy at consensus DNA binding sites. The most prominent decrease in MYC binding was seen at low-affinity promoters, which were invaded by MYC at oncogenic levels. Strikingly, gene set enrichment analyses using OmoMYC-regulated genes enabled the identification of tumor subgroups with high MYC levels in multiple tumor entities. Together with a targeted shRNA screen, this identified novel targets for the eradication of MYC-driven tumors, such as ATAD3A, BOP1, and ADRM1. In summary, the findings suggest that OmoMYC specifically inhibits tumor cell growth by attenuating the expression of rate-limiting proteins in cellular processes that respond to elevated levels of MYC protein using a DNA-competitive mechanism. This opens up novel strategies to target oncogenic MYC functions for tumor therapy.},
  subject      = {Myc},
  language  = {en}
}
@phdthesis{Ziegler2016,
  author    = {Ziegler, Christiane},
  title     = {Epigenetic Mechanisms in the Pathogenesis and Therapy of Anxiety Disorders},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-146815},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2016},
  abstract  = {Anxiety disorders (AD) are common, disabling mental disorders, which constitute the most prevalent mental health condition conveying a high individual and socioeconomic burden. Social anxiety disorder (SAD), i.e. fear in social situations particularly when subjectively scrutinized by others, is the second most common anxiety disorder with a life time prevalence of 10\%. Panic disorder (PD) has a life time prevalence of 2-5\% and is characterized by recurrent and abrupt surges of intense fear and anticipatory anxiety, i.e. panic attacks, occurring suddenly and unexpected without an apparent cue. In recent years, psychiatric research increasingly focused on epigenetic mechanisms such as DNA methylation as a possible solution for the problem of the so-called "hidden heritability", which conceptualizes the fact that the genetic risk variants identified so far only explain a small part of the estimated heritability of mental disorders. In the first part of this thesis, oxytocin receptor (OXTR) gene methylation was investigated regarding its role in the pathogenesis of social anxiety disorder. In summary, OXTR methylation patterns were implicated in different phenotypes of social anxiety disorder on a categorical, neuropsychological, neuroendocrinological as well as on a neural network level. The results point towards a multilevel role of OXTR gene hypomethylation particularly at one CpG site (CpG3, Chr3: 8 809 437) within the protein coding region of the gene in SAD. The second part of the thesis investigated monoamine oxidase A (MAOA) gene methylation regarding its role in the pathogenesis of panic disorder as well as - applying a psychotherapy-epigenetic approach - its dynamic regulation during the course of cognitive behavioural therapy (CBT) in PD patients. First, MAOA hypomethylation was shown to be associated with panic disorder as well as with panic disorder severity. Second, in patients responding to treatment MAOA hypomethylation was shown to be reversible up to the level of methylation in healthy controls after the course of CBT. This increase in MAOA methylation along with successful psychotherapeutic treatment was furthermore shown to be associated with symptom improvement regarding agoraphobic avoidance in an independent replication sample of non-medicated patients with PD. Taken together, in the future the presently identified epigenetic patterns might contribute to establishing targeted preventive interventions and personalized treatment options for social anxiety disorder or panic disorder, respectively.},
  subject      = {Angst},
  language  = {en}
}
@phdthesis{Ruf2016,
  author    = {Ruf, Franziska},
  title     = {The circadian regulation of eclosion in \(Drosophila\) \(melanogaster\)},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-146265},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2016},
  abstract  = {Eclosion is the emergence of an adult insect from the pupal case at the end of development. In the fruit fly Drosophila melanogaster, eclosion is a circadian clock-gated event and is regulated by various peptides. When studied on the population level, eclosion reveals a clear rhythmicity with a peak at the beginning of the light-phase that persists also under constant conditions. It is a long standing hypothesis that eclosion gating to the morning hours with more humid conditions is an adaption to reduce water loss and increase the survival. Eclosion behavior, including the motor pattern required for the fly to hatch out of the puparium, is orchestrated by a well-characterized cascade of peptides. The main components are ecdysis-triggering hormone (ETH), eclosion hormone (EH) and crustacean cardioactive peptide (CCAP). The molt is initiated by a peak level and pupal ecdysis by a subsequent decline of the ecdysteroid ecdysone. Ecdysteroids are produced by the prothoracic gland (PG), an endocrine tissue that contains a peripheral clock and degenerates shortly after eclosion. Production and release of ecdysteroids are regulated by the prothoracicotropic hormone (PTTH). Although many aspects of the circadian clock and the peptidergic control of the eclosion behavior are known, it still remains unclear how both systems are interconnected. The aim of this dissertation research was to dissect this connection and evaluate the importance of different Zeitgebers on eclosion rhythmicity under natural conditions. Potential interactions between the central clock and the peptides regulating ecdysis motor behavior were evaluated by analyzing the influence of CCAP on eclosion rhythmicity. Ablation and silencing of CCAP neurons, as well as CCAP null-mutation did not affect eclosion rhythmicity under either light or temperature entrainment nor under natural conditions. To dissect the connection between the central and the peripheral clock, PTTH neurons were ablated. Monitoring eclosion under light and temperature entrainment revealed that eclosion became arrhythmic under constant conditions. However, qPCR expression analysis revealed no evidence for cycling of Ptth mRNA in pharate flies. To test for a connection with pigment-dispersing factor (PDF)-expressing neurons, the PDF receptor (PDFR) and short neuropeptide F receptor (sNPFR) were knocked down in the PTTH neurons. Knockdown of sNPFR, but not PDFR, resulted in arrhythmic eclosion under constant darkness conditions. PCR analysis of the PTTH receptor, Torso, revealed its expression in the PG and the gonads, but not in the brain or eyes, of pharate flies. Knockdown of torso in the PG lead to arrhythmicity under constant conditions, which provides strong evidence for the specific effect of PTTH on the PG. These results suggest connections from the PDF positive lateral neurons to the PTTH neurons via sNPF signaling, and to the PG via PTTH and Torso. This interaction presumably couples the period of the peripheral clock in the PG to that of the central clock in the brain. To identify a starting signal for eclosion and possible further candidates in the regulation of eclosion behavior, chemically defined peptidergic and aminergic neurons were optogenetically activated in pharate pupae via ChR2-XXL. This screen approach revealed two candidates for the regulation of eclosion behavior: Dromyosuppressin (DMS) and myo-inhibitory peptides (MIP). However, ablation of DMS neurons did not affect eclosion rhythmicity or success and the exact function of MIP must be evaluated in future studies. To assess the importance of the clock and of possible Zeitgebers in nature, eclosion of the wildtype Canton S and the clock mutant per01 and the PDF signaling mutants pdf01 and han5304 was monitored under natural conditions. For this purpose, the W{\"u}rzburg eclosion monitor (WEclMon) was developed, which is a new open monitoring system that allows direct exposure of pupae to the environment. A general decline of rhythmicity under natural conditions compared to laboratory conditions was observed in all tested strains. While the wildtype and the pdf01 and han5304 mutants stayed weakly rhythmic, the per01 mutant flies eclosed mostly arrhythmic. PDF and its receptor (PDFR encoded by han) are required for the synchronization of the clock network and functional loss can obviously be compensated by a persisting synchronization to external Zeitgebers. The loss of the central clock protein PER, however, lead to a non-functional clock and revealed the absolute importance of the clock for eclosion rhythmicity. To quantitatively analyze the effect of the clock and abiotic factors on eclosion rhythmicity, a statistical model was developed in cooperation with Oliver Mitesser and Thomas Hovestadt. The modelling results confirmed the clock as the most important factor for eclosion rhythmicity. Moreover, temperature was found to have the strongest effect on the actual shape of the daily emergence pattern, while light has only minor effects. Relative humidity could be excluded as Zeitgeber for eclosion and therefore was not further analyzed. Taken together, the present dissertation identified the so far unknown connection between the central and peripheral clock regulating eclosion. Furthermore, a new method for the analysis of eclosion rhythms under natural conditions was established and the necessity of a functional clock for rhythmic eclosion even in the presence of multiple Zeitgebers was shown.},
  subject      = {Taufliege},
  language  = {en}
}
@phdthesis{Schuerlein2016,
  author    = {Sch{\"u}rlein, Sebastian},
  title     = {Entwicklung von Technologien zur Optimierung von Tissue Engineering Prozessen am Beispiel der Herstellung von kardialem Gewebe},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-142432},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2016},
  abstract  = {Kardiovaskul{\"a}re Erkrankungen, wie beispielsweise der Herzinfarkt, sind die h{\"a}ufigste Todesursache weltweit. Bei einem Herzinfarkt sterben Areale des Herzens aufgrund einer Unterversorgung mit Blut ab. Da das Herzmuskelgewebe ein sogenanntes terminal differenziertes Gewebe ist, kommt es zu keiner Regeneration des Gewebes, mit der Folge einer Herzinsuffizienz beziehungsweise dem Tod des Patienten. Eine alternative Behandlungsm{\"o}glichkeit zu einer Herztransplantation stellt das Tissue Engineering dar. Mit Hilfe des Tissue Engineerings k{\"o}nnen dreidimensionale Gewebe aufgebaut und kultiviert werden, um auf diese Weise ein funktionelles Gewebe zu erhalten, durch welches das abgestorbene Gewebeareal des Herzens zuk{\"u}nftig auch ersetzt werden k{\"o}nnte. In der vorliegenden Arbeit wurden notwendige Technologien f{\"u}r den Aufbau von Geweben entwickelt sowie erste Versuche f{\"u}r die Erzeugung eines funktionellen Herzmuskelgewebes durchgef{\"u}hrt. Beim Aufbau von dreidimensionalen Geweben finden Tr{\"a}gerstrukturen Anwendung, die mit Zellen besiedelt werden. Solche Tr{\"a}gerstrukturen k{\"o}nnen aus biologischen oder synthetischen Polymeren hergestellt sein oder aus der extrazellul{\"a}ren Matrix eines dezellularisierten Gewebes bestehen. F{\"u}r eine standardisierte Dezellularisierung von Geweben wurde eine computergesteuerte Pumpeneinheit, f{\"u}r die Herstellung von Nanofaserscaffolds eine Elektrospinninganlage entwickelt. Mit Hilfe der Dezellularisierungseinheit k{\"o}nnen komplexe Organe, wie ein Herz im Ganzen, reproduzierbar dezellularisiert werden. Untersuchungen der mittels Elektrospinning hergestellten Nanofaserscaffolds, welche als Alternative zu der dezellularisierten, nat{\"u}rlichen Matrix eingesetzt werden k{\"o}nnen, zeigten bei allen hergestellten Zusammensetzungen eine Orientierung der Zellen entlang der Fasern. Die Kultivierung von Zellmatrixkonstrukten erfolgt im Tissue Engineering h{\"a}ufig unter dynamischen Bedingungen. Hierf{\"u}r wurde ein mobiler Stand Alone Inkubator mit der erforderlichen Peripherie f{\"u}r eine Kultur unter Perfusion des Gewebes entwickelt. Als Weiterentwicklung des Stand Alone Inkubators ist eine modulare Bioreaktorplattform, bestehend aus W{\"a}rmetauscher, Beutelpumpe und Gasaustauscher, aufgebaut worden. In dieses System kann {\"u}ber Standard Anschl{\"u}sse jegliche Art von Bioreaktor in das System eingebunden werden. Durch die Kompaktheit des Systems ist es m{\"o}glich mehrere Ans{\"a}tze parallel auf engem Raum durchzuf{\"u}hren. Die Funktion der Plattform, wurde in der vorliegenden Arbeit durch die Gewebekultur einer nativen porzinen Karotis nachgewiesen. F{\"u}r den Aufbau des kardialen Gewebes dient die small intestinal submucosa ohne Serosa (SISser) als Tr{\"a}gerstruktur. Der Aufbau des Gewebekonstrukts erfolgte in verschiedenen Ans{\"a}tzen unter Einsatz verschiedener Zellarten. Native, aus Herzbiopsien generierte Cardiosphere derived cells (CDCs) verteilten sich gleichm{\"a}ßige {\"u}ber die Oberfl{\"a}che der Matrix, jedoch konnten immunhistologisch keine spezifischen kardialen Marker bei den artifiziellen Geweben nachgewiesen werden. Zellmatrixkonstrukte aus einer Mono Kultur von Kardiomyozyten, differenziert aus induzierten pluripotenten Stammzellen (iPS Zellen) sowie einer Co Kultur dieser Kardiomyozyten mit mesenchymalen Stammzellen und Zellen aus einer Herzbiopsie zeigten nach wenigen Tagen in Kultur ein kontraktiles Verhalten. Immunhistologische F{\"a}rbungen der beiden Gewebe best{\"a}tigten die Expression der spezifischen kardialen Marker, wie beispielsweise kardiales Troponin T, kardiales Troponin C und alpha Actinin. Die Kardiomyozyten der Mono Kultur sind jedoch nicht {\"u}ber die gesamte Matrixoberfl{\"a}che verteilt, sondern bilden Aggregate. Bei der Co Kultur kann eine gleichm{\"a}ßige Verteilung der Zellen auf der Matrix beobachtet werden. Der vielversprechendste Ansatz f{\"u}r den Aufbau eines Herzmuskelgewebes, welches als Implantat oder Testsystem eingesetzt werden kann, bildet nach den in dieser Arbeit erzielten Ergebnissen, ein Konstrukt aus der SISser und der Co Kultur der Zellen. Allerdings muss die Zusammensetzung der Co Kultur sowie das Verh{\"a}ltnis der Zellzahlen optimiert werden.},
  subject      = {Tissue Engineering},
  language  = {de}
}
@phdthesis{Schmid2016,
  author    = {Schmid, Evelyn},
  title     = {Effekte des Raf Kinase Inhibitor Proteins (RKIP) auf β-adrenerge Signalwege, Herzfunktion und die Entwicklung der Herzinsuffizienz},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-142486},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2016},
  abstract  = {Das Raf kinase inhibitor protein (RKIP) ist ein Kinaseregulator, der im Herzen eine Pr{\"a}ferenz f{\"u}r die G-Protein-gekoppelte Rezeptorkinase 2 (GRK2) zeigt. Die Regulation erfolgt durch direkte Interaktion beider Proteine, wird durch eine PKC-Phosphorylierung an Serin 153 des RKIP induziert und inhibiert die GRK2-vermittelte Phosphorylierung von G-Protein-gekoppelten Rezeptoren (GPCR). Die GRK2 desensitiviert GPCR und eine Hemmung der GRK2-Aktivit{\"a}t wirkt sich so positiv auf die Ansprechbarkeit von GPCR aus. Die \textbeta-adrenergen Rezeptoren (\textbeta AR) sind im Herzen maßgeblich an der Regulation der kardialen Kontraktilit{\"a}t beteiligt. Erste Zusammenh{\"a}nge zwischen der RKIP-Expression und der kontraktilen Antwort von Kardiomyozyten wurden bereits in einer fr{\"u}heren Arbeit untersucht und best{\"a}tigt. Sie begr{\"u}nden die Fragestellung nach Effekten einer verst{\"a}rkten RKIP-Expression auf \textbeta-adrenerge Rezeptorsignale, Herzfunktion und die Entwicklung der Herzinsuffizienz. Im Rahmen dieses Projektes konnten die Effekte des RKIP auf \textbeta-adrenerge Signalwege detaillierter beschrieben werden. Dabei erwies sich die inhibitorische Funktion auf die GRK2 als rezeptorspezifisch ohne Einfluss auf zytosolische Angriffspunkte der GRK2 zu nehmen. Verst{\"a}rkte \textbeta-adrenerge Signale zeigten sich in neonatalen Kardiomyozyten an Hand der erh{\"o}hten cAMP-Level, PKA-Aktivit{\"a}t, sowie Kontraktionsrate und Relaxationsgeschwindigkeit nach \textbeta-adrenerger Stimulation. Im Einklang damit konnte eine erh{\"o}hte PKA- und CaMKII-Aktivit{\"a}t und eine positive Inotropie in transgenen Tieren, mit herzspezifischer {\"U}berexpression von RKIP, beobachtet werden. Durch Messung des Calcium-\textit{Cyclings} in Kardiomyozyten konnte der Ph{\"a}notyp auf eine verbesserte R{\"u}ckf{\"u}hrung des Calciums, einer daraus resultierenden erh{\"o}hten Calciumbeladung des sarkoplasmatischen Retikulums und einem gesteigerten systolischen Calciumspiegel, zur{\"u}ckgef{\"u}hrt werden. Die Untersuchung der Phosphorylierung von Calciumkan{\"a}len, L-Typ-Calciumkanal und Ryanodin-Rezeptor 2, die den einw{\"a}rtsgerichteten Calciumstrom vermitteln konnte ihre Beteiligung an der positiv inotropen Wirkung ausschließen. Neben dem kontraktilen Ph{\"a}notyp konnten zus{\"a}tzliche protektive Effekte beobachtet werden. In Modellen, die eine chronische \textbeta-adrenerge Stimulation imitieren, bzw. eine Nachlasterh{\"o}hung induzieren konnte eine Verringerung der interstitiellen Fibrose und der damit assoziierten Marker, gezeigt werden. Mit Hilfe von \textit{in vivo} EKG-Messungen konnte die Neigung zur Ausbildung von Arrhythmien untersucht werden. Auch im Hinblick auf die Anzahl der Extrasystolen waren RKIP-transgene Tiere gesch{\"u}tzt. Infolge der Untersuchung der Ph{\"a}notypen in Deletionshintergr{\"u}nden der einzelnen \textbeta AR-Subtypen (\textbeta\textsubscript{1}AR, \textbeta\textsubscript{2}AR) konnte die positive Inotropie mit den spezifischen Signalwegen des \textbeta\textsubscript{1}AR assoziiert und die protektiven Effekte gegen{\"u}ber den Umbauprozessen und der Arrhythmieneigung dem \textbeta\textsubscript{2}-adrenergen Signalen zugeschrieben werden. Zus{\"a}tzlich best{\"a}tigt sich eine besondere Rolle der G\textalpha\textsubscript{i}-Kopplung des \textbeta\textsubscript{2}AR, durch die er einen hemmenden Einfluss auf die \textbeta\textsubscript{1}AR-Singale nehmen kann. Die Untersuchung einiger Marker, die eine physiologische von einer pathologischen Hypertrophie unterscheiden, konnte das in den RKIP-transgenen M{\"a}usen auftretende Wachstum der Kardiomyozyten als kompensatorische und physiologische Hypertrophie charakterisieren. Zusammengenommen weisen diese Ergebnisse auf eine ausgeglichene Aktivierung der beiden Rezeptoren hin, die sich gegenseitig regulieren und durch die Inhibition der GRK2 in ihrer Anregbarkeit erhalten bleiben. Mittels einer AAV9-vermittelten Gentherapie konnte das therapeutische Potential dieses Prinzips weiter best{\"a}tigt werden, da es die prominentesten Ver{\"a}nderungen w{\"a}hrend der Herzinsuffizienzentwicklung, wie die Verschlechterung der linksventrikul{\"a}ren Funktion, die Dilatation des linken Ventrikels, die Ausbildung von Lungen{\"o}demen und interstitieller Fibrose sowie die Expression von Herzinsuffizienz-assoziierten Genen, verhindern konnte. Auch konnten die Auswirkungen der Deletion des RKIP, die sich durch eine beschleunigte und gravierendere Herzinsuffizienzentwicklung auszeichnet, durch Reexpression von RKIP verhindert werden. Diese Arbeit kann somit zeigen, dass das RKIP eine ausgeglichene Verst{\"a}rkung von \textbeta-adrenergen Signalwegen verursacht, die positiv inotrop und gleichzeitig protektiv wirkt. Dieses Wirkprinzip k{\"o}nnte ferner eine Strategie zur Erh{\"o}hung der Kontraktilit{\"a}t in der Herzinsuffizienz darstellen, die entgegen etablierter Theorien auf der Stimulation beider \textbeta AR basiert.},
  subject      = {Herzinsuffizienz},
  language  = {de}
}
@phdthesis{Wanzek2016,
  author    = {Wanzek, Katharina},
  title     = {The investigation of the function of repair proteins at G-quadruplex structures in \(Saccharomyces\) \(cerevisiae\) revealed that Mms1 promotes genome stability},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-142547},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2016},
  abstract  = {G-quadruplex structures are highly stable alternative DNA structures that can, when not properly regulated, impede replication fork progression and cause genome instability (Castillo Bosch et al, 2014; Crabbe et al, 2004; Koole et al, 2014; Kruisselbrink et al, 2008; London et al, 2008; Lopes et al, 2011; Paeschke et al, 2013; Paeschke et al, 2011; Piazza et al, 2015; Piazza et al, 2010; Piazza et al, 2012; Ribeyre et al, 2009; Sabouri et al, 2014; Sarkies et al, 2012; Sarkies et al, 2010; Schiavone et al, 2014; Wu \& Spies, 2016; Zimmer et al, 2016). The aim of this thesis was to identify novel G-quadruplex interacting proteins in Saccharomyces cerevisiae and to unravel their regulatory function at these structures to maintain genome integrity. Mms1 and Rtt101 were identified as G-quadruplex binding proteins in vitro via a pull-down experiment with subsequent mass spectrometry analysis. Rtt101, Mms1 and Mms22, which are all components of an ubiquitin ligase (Rtt101Mms1/Mms22), are important for the progression of the replication fork following fork stalling (Luke et al, 2006; Vaisica et al, 2011; Zaidi et al, 2008). The in vivo binding of endogenously tagged Mms1 to its target regions was analyzed genome-wide using chromatin-immunoprecipitation followed by deep-sequencing. Interestingly, Mms1 bound independently of Mms22 and Rtt101 to G-rich regions that have the potential to form G-quadruplex structures. In vitro, formation of G-quadruplex structures could be shown for the G-rich regions Mms1 bound to. This binding was observed throughout the cell cycle. Furthermore, the deletion of MMS1 caused replication fork stalling as evidenced by increased association of DNA Polymerase 2 at Mms1 dependent sites. A gross chromosomal rearrangement assay revealed that deletion of MMS1 results in a significantly increased genome instability at G-quadruplex motifs compared to G-rich or non-G-rich regions. Additionally, binding of the helicase Pif1, which unwinds G4 structures in vitro (Paeschke et al, 2013; Ribeyre et al, 2009; Sanders, 2010; Wallgren et al, 2016), to Mms1 binding sites was reduced in mms1 cells. The data presented in this thesis, together with published data, suggests a novel mechanistic model in which Mms1 binds to G-quadruplex structures and enables Pif1 association. This allows for replication fork progression and genome integrity.},
  subject      = {Quadruplex-DNS},
  language  = {en}
}
@phdthesis{Rodrigues2016,
  author    = {Rodrigues, Johannes},
  title     = {Let me change your mind… Frontal brain activity in a virtual T-maze},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-143280},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2016},
  abstract  = {Frontal asymmetry, a construct invented by Richard Davidson, linking positive and negative valence as well as approach and withdrawal motivation to lateralized frontal brain activation has been investigated for over thirty years. The frontal activation patterns described as relevant were measured via alpha-band frequency activity (8-13 Hz) as a measurement of deactivation in electroencephalography (EEG) for homologous electrode pairs, especially for the electrode position F4/ F3 to account for the frontal relative lateralized brain activation. Three different theories about frontal activation patterns linked to motivational states were investigated in two studies. The valence theory of Davidson (1984; 1998a; 1998b) and its extension to the motivational direction theory by Harmon-Jones and Allen (1998) refers to the approach motivation with relative left frontal brain activity (indicated by relative right frontal alpha activity) and to withdrawal motivation with relative right frontal brain activation (indicated by relative left frontal alpha activity). The second theory proposed by Hewig and colleagues (2004; 2005; 2006) integrates the findings of Davidson and Harmon - Jones and Allen with the reinforcement sensitivity theory of Jeffrey A. Gray (1982, 1991). Hewig sees the lateralized frontal approach system and withdrawal system proposed by Davidson as subsystems of the behavioral activation system proposed by Gray and bilateral frontal activation as a biological marker for the behavioral activation system. The third theory investigated in the present studies is the theory from Wacker and colleagues (2003; 2008; 2010) where the frontal asymmetrical brain activation patterns are linked to the revised reinforcement sensitivity theory of Gray and McNaughton (2000). Here, right frontal brain activity (indicated by lower relative right frontal alpha activity) accounts for conflict, behavioral inhibition and activity of the revised behavioral inhibition system, while left frontal brain activation (indicated by lower relative left frontal alpha activity) stands for active behavior and the activity of the revised behavioral activation system as well as the activation of the revised flight fight freezing system. In order to investigate these three theories, a virtual reality T-maze paradigm was introduced to evoke motivational states in the participants, offering the opportunity to measure frontal brain activation patterns via EEG and behavior simultaneously in the first study. In the second study the virtual reality paradigm was additionally compared to mental imagery and a movie paradigm, two well-known state inducing paradigms in the research field of frontal asymmetry. In the two studies, there was confirming evidence for the theory of Hewig and colleages (2004; 2005; 2006), showing higher bilateral frontal activation for active behavior and lateralized frontal activation patterns for approach (left frontal brain activation) and avoidance (right frontal brain activation) behavior. Additionally a limitation for the capability model of anterior brain asymmetry proposed by Coan and colleagues (2006), where the frontal asymmetry should be dependent on the relevant traits driving the frontal asymmetry pattern if a relevant situation occurs, could be found. As the very intense virtual reality paradigm did not lead to a difference of frontal brain activation patterns compared to the mental imagery paradigm or the movie paradigm for the traits of the participants, the trait dependency of the frontal asymmetry in a relevant situation might not be given, if the intensity of the situation exceeds a certain level. Nevertheless there was an influence of the traits in the virtual reality T-maze paradigm, because the shown behavior in the maze was trait-dependent. The implications of the findings are multifarious, leading from possible objective personality testing via diversification of the virtual reality paradigm to even clinical implications for depression treatments based on changes in the lateralized frontal brain activation patterns for changes in the motivational aspects, but also for changes in bilateral frontal brain activation when it comes to the drive and preparedness for action in patients. Finally, with the limitation of the capability model, additional variance in the different findings about frontal asymmetry can be explained by taking the intensity of a state manipulation into account.},
  subject      = {Electroencephalographie},
  language  = {en}
}
@phdthesis{Schweinlin2016,
  author    = {Schweinlin, Matthias Oliver},
  title     = {Development of advanced human intestinal in vitro models},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-142571},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2016},
  abstract  = {The main function of the small intestine is the absorption of essential nutrients, water and vitamins. Moreover, it constitutes a barrier protecting us from toxic xenobiotics and pathogens. For a better understanding of these processes, the development of intestinal in vitro models is of great interest to the study of pharmacological and pathological issues such as transport mechanisms and barrier function. Depending on the scientific questions, models of different complexity can be applied. In vitro Transwell® systems based on a porous PET-membrane enable the standardized study of transport mechanisms across the intestinal barrier as well as the investigation of the influence of target substances on barrier integrity. However, this artificial setup reflects only limited aspects of the physiology of the native small intestine and can pose an additional physical barrier. Hence, the applications of this model for tissue engineering are limited. Previously, tissue models based on a biological decellularized scaffold derived from porcine gut tissue were demonstrated to be a good alternative to the commonly used Transwell® system. This study showed that preserved biological extracellular matrix components like collagen and elastin provide a natural environment for the epithelial cells, promoting cell adhesion and growth. Intestinal epithelial cells such as Caco-2 cultured on such a scaffold showed a confluent, tight monolayer on the apical surface. Additionally, myofibroblasts were able to migrate into the scaffold supporting intestinal barrier formation. In this thesis, dendritic cells were additionally introduced to this model mimicking an important component of the immune system. This co-culture model was then successfully proven to be suitable for the screening of particle formulations developed as delivery system for cancer antigens in peroral vaccination studies. In particular, nanoparticles based on PLGA, PEG-PAGE-PLGA, Mannose-PEG-PAGE-PLGA and Chitosan were tested. Uptake studies revealed only slight differences in the transcellular transport rate among the different particles. Dendritic cells were shown to phagocytose the particles after they have passed the intestinal barrier. The particles demonstrated to be an effective carrier system to transport peptides across the intestinal barrier and therefore present a useful tool for the development of novel drugs. Furthermore, to mimic the complex structure and physiology of the gut including the presence of multiple different cell types, the Caco-2 cell line was replaced by primary intestinal cells to set up a de novo tissue model. To that end, intestinal crypts including undifferentiated stem cells and progenitor cells were isolated from human small intestinal tissue samples (jejunum) and expanded in vitro in organoid cultures. Cells were cultured on the decellularized porcine gut matrix in co-culture with intestinal myofibroblasts. These novel tissue models were maintained under either static or dynamic conditions. Primary intestinal epithelial cells formed a confluent monolayer including the major differentiated cell types positive for mucin (goblet cells), villin (enterocytes), chromogranin A (enteroendocrine cells) and lysozyme (paneth cells). Electron microscopy images depicted essential functional units of an intact epithelium, such as microvilli and tight junctions. FITC-dextran permeability and TEER measurements were used to assess tightness of the cell layer. Models showed characteristic transport activity for several reference substances. Mechanical stimulation of the cells by a dynamic culture system had a great impact on barrier integrity and transporter activity resulting in a tighter barrier and a higher efflux transporter activity. In Summary, the use of primary human intestinal cells combined with a biological decellularized scaffold offers a new and promising way to setup more physiological intestinal in vitro models. Maintenance of primary intestinal stem cells with their proliferation and differentiation potential together with adjusted culture protocols might help further improve the models. In particular, dynamic culture systems and co culture models proofed to be a first crucial steps towards a more physiological model. Such tissue models might be useful to improve the predictive power of in vitro models and in vitro in vivo correlation (IVIVC) studies. Moreover, these tissue models will be useful tools in preclinical studies to test pharmaceutical substances, probiotic active organisms, human pathogenic germs and could even be used to build up patient-specific tissue model for personalized medicine.},
  subject      = {Tissue Engineering},
  language  = {en}
}
@phdthesis{Rovituso2016,
  author    = {Rovituso, Damiano},
  title     = {Die Rolle der autoreaktiven B-Zellen und Autoantik{\"o}rper in der Pathophysiologie der Multiplen Sklerose},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-141003},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2016},
  abstract  = {Multiple Sklerose (MS) ist die h{\"a}ufigste neurologische Erkrankung, die bei jungen Erwachsenen zu dauerhaften k{\"o}rperlichen Einschr{\"a}nkungen f{\"u}hrt. Ein Kennzeichen der MS sind zeitlich und {\"o}rtlich disseminierte entz{\"u}ndliche L{\"a}sionen im zentralen Nervensystem (ZNS). Die L{\"a}sionsart, die am h{\"a}ufigsten auftritt, ist u. a. durch Antik{\"o}rperablagerungen charakterisiert. Die h{\"a}ufigste Verlaufsform der MS tritt in Sch{\"u}ben auf. Im Laufe der Erkrankung bilden sich die Symptome in der Mehrzahl der Patienten unvollst{\"a}ndig zur{\"u}ck und es entwickelt sich ein chronischer Verlauf. Trotz intensiver Forschung ist die {\"A}tiologie der MS bisher unbekannt Bis heute gibt es keine Biomarker, um den Therapieerfolg oder das Therapieversagen der MS-Basistherapeutika (Glatirameracetat und β-Interferon) zu bestimmen. Aktuelle Studien, bei denen B-Zellen depletiert wurden, zeigten eine signifikante Reduktion MS-typischer L{\"a}sionen und der Schubrate bei der schubf{\"o}rmigen MS. Man vermutet, dass autoreaktive B-Zellen vielf{\"a}ltige Aufgaben in der Pathogenese der MS {\"u}bernehmen: sie produzieren Autoantik{\"o}rper, pr{\"a}sentieren autoreaktiven T-Zellen Autoantigene und sezernieren Mediatoren, die zur Aktivierung anderer Immunzellen f{\"u}hren. Es ist noch unklar, welche B-Zell-Untergruppe bei der MS besondere Relevanz hat. Vor kurzem wurden B1-Zellen beim Menschen beschrieben. Eine Studie zeigte, dass die Anzahl der B1-Zellen in unbehandelten MS-Patienten signifikant erniedrigt war. Des Weiteren wurden im ZNS von chronisch erkrankten MS-Patienten B-Zell-Aggregate nachgewiesen. Diese B-Zell-Aggregate {\"a}hneln sekund{\"a}ren lymphatischen Organen und k{\"o}nnten zur Progredienz der Erkrankung beitragen. Eine ex vivo-Studie zeigte, dass die B-Zell-Aggregat-Bildung durch das Adh{\"a}sionsmolek{\"u}l CEACAM1-(carcinoembryogenic antigen-related cell adhesion molecule 1) vermittelt wird. {\"U}berdies ist die Koexpression von CEACAM1 und TIM-3 (T-cell immunoglobulin- and mucin-domain containing-3) f{\"u}r immunersch{\"o}pfte und tolerante T-Zellen charakteristisch. Schließlich konnte unsere Arbeitsgruppe zeigen, dass ZNS-reaktive B-Zellen nur im Blut von Patienten mit einem klinisch isolierten Syndrom und MS-Patienten nachweisbar waren. In meiner Studie habe ich den Einfluss von MS-Basistherapeutika und einer MS-Eskalationstherapie auf die B-Zell-Untergruppen untersucht. Dabei habe ich die naive B-Zell-, B-Ged{\"a}chtniszell-, B1-Zell- und Plasmablasten-Zahl von gesunden Probanden sowie unbehandelten und behandelten MS-Patienten miteinander verglichen. Die B-Zell-Untergruppen wurden durchflusszytometrisch untersucht. Die B1-Zell-Zahl war bei behandelten und unbehandelten MS-Patienten signifikant erniedrigt. In einer weiteren Studie konnte ich zeigen, dass die Anwesenheit von ZNS-reaktiven B-Zellen im Blut von glatirameracetat-behandelten MS-Patienten mit dem Therapieerfolg assoziiert war. Die ZNS-reaktiven B-Zellen wurden durch einen ZNS-Lysat-ELISPOT detektiert. Schließlich habe ich in einer dritten Studie die Expression von CEACAM1 und TIM-3 auf B-Zellen bei natalizumab-behandelten MS-Patienten durchflusszytometrisch untersucht. Im Vergleich zu gesunden Probanden zeigte sich, dass im Blut der MS-Patienten die CEACAM1+- und die CEACAM1\(^+\)TIM-3\(^+\)-B-Zell-Zahl signifikant erh{\"o}ht war. Im Gegensatz dazu waren CEACAM1\(^+\)TIM-3\(^+\)-T-Helferzellen signifikant erniedrigt in behandelten MS-Patienten. Meine Arbeit belegt, dass die B1-Zell-Population unabh{\"a}ngig von der MS-Therapie in MS-Patienten erniedrigt ist. Ungekl{\"a}rt bleibt, ob diese Erniedrigung eine Folge oder eine Ursache der Erkrankung ist. B1-Zellen sind die Quelle von nat{\"u}rlichen Antik{\"o}rpern in Mensch und Tier. Sie haben protektive Eigenschaften und sind bei der B-Zell-Toleranzinduktion beteiligt. Die protektiven Funktionen der nat{\"u}rlichen Antik{\"o}rper k{\"o}nnten durch die Erniedrigung der B1-Zell-Zahl ausbleiben. Zus{\"a}tzlich waren B-Zellen mit einem immunersch{\"o}pften Ph{\"a}notyp im Blut von MS-Patienten erh{\"o}ht. Trotz Stimulation konnte kein Ph{\"a}notyp bei T-Helferzellen induziert werden, der f{\"u}r tolerante und immunersch{\"o}pfte T-Zellen beschrieben worden ist. In zuk{\"u}nftigen Studien sollte man die B1-Zell-Zahl und die CEACAM1\(^+\)TIM-3\(^+\)-B- und -T-Zell-Zahl bei Patienten mit einem klinisch isolierten Syndrom im Liquor und im Blut untersuchen. Damit k{\"o}nnte man feststellen, ob B1-Zellen aus der Peripherie bei MS-Patienten in das ZNS migrieren. Die Anwesenheit ZNS-reaktiver B-Zellen im Blut von behandelten MS-Patienten zeigte sich in meiner Arbeit als ein Marker, um den Therapieerfolg zu dokumentieren. Eine weiterf{\"u}hrende Querschnittstudie (COPSELECT) wird ZNS-reaktive B-Zellen mittels ZNS-Lysat-ELISPOT als zuk{\"u}nftige Therapie-Biomarker ausf{\"u}hrlicher untersuchen. MS-Biomarker w{\"a}ren f{\"u}r den einzelnen Betroffenen von großer Bedeutung und h{\"a}tten ebenfalls gesundheits{\"o}konomisch eine hohe Relevanz.},
  subject      = {Multiple Sklerose},
  language  = {mul}
}