@article{CorreiaSantosBischlerWestermannetal.2021,
  author    = {Correia Santos, Sara and Bischler, Thorsten and Westermann, Alexander J. and Vogel, J{\"o}rg},
  title     = {MAPS integrates regulation of actin-targeting effector SteC into the virulence control network of Salmonella small RNA PinT},
  series = {Cell Reports},
  volume    = {34},
  journal   = {Cell Reports},
  number    = {5},
  doi       = {10.1016/j.celrep.2021.108722},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-259134},
  pages     = {108722},
  year      = {2021},
  abstract  = {A full understanding of the contribution of small RNAs (sRNAs) to bacterial virulence demands knowledge of their target suites under infection-relevant conditions. Here, we take an integrative approach to capturing targets of the Hfq-associated sRNA PinT, a known post-transcriptional timer of the two major virulence programs of Salmonella enterica. Using MS2 affinity purification and RNA sequencing (MAPS), we identify PinT ligands in bacteria under in vitro conditions mimicking specific stages of the infection cycle and in bacteria growing inside macrophages. This reveals PinT-mediated translational inhibition of the secreted effector kinase SteC, which had gone unnoticed in previous target searches. Using genetic, biochemical, and microscopic assays, we provide evidence for PinT-mediated repression of steC mRNA, eventually delaying actin rearrangements in infected host cells. Our findings support the role of PinT as a central post-transcriptional regulator in Salmonella virulence and illustrate the need for complementary methods to reveal the full target suites of sRNAs.},
  language  = {en}
}
@article{EiringMcLaughlinMatikondaetal.2021,
  author    = {Eiring, Patrick and McLaughlin, Ryan and Matikonda, Siddharth S. and Han, Zhongying and Grabenhorst, Lennart and Helmerich, Dominic A. and Meub, Mara and Beliu, Gerti and Luciano, Michael and Bandi, Venu and Zijlstra, Niels and Shi, Zhen-Dan and Tarasov, Sergey G. and Swenson, Rolf and Tinnefeld, Philip and Glembockyte, Viktorija and Cordes, Thorben and Sauer, Markus and Schnermann, Martin J.},
  title     = {Targetable conformationally restricted cyanines enable photon-count-limited applications},
  series = {Angewandte Chemie Internationale Edition},
  volume    = {60},
  journal   = {Angewandte Chemie Internationale Edition},
  number    = {51},
  doi       = {10.1002/anie.202109749},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-256559},
  pages     = {26685-26693},
  year      = {2021},
  abstract  = {Cyanine dyes are exceptionally useful probes for a range of fluorescence-based applications, but their photon output can be limited by trans-to-cis photoisomerization. We recently demonstrated that appending a ring system to the pentamethine cyanine ring system improves the quantum yield and extends the fluorescence lifetime. Here, we report an optimized synthesis of persulfonated variants that enable efficient labeling of nucleic acids and proteins. We demonstrate that a bifunctional sulfonated tertiary amide significantly improves the optical properties of the resulting bioconjugates. These new conformationally restricted cyanines are compared to the parent cyanine derivatives in a range of contexts. These include their use in the plasmonic hotspot of a DNA-nanoantenna, in single-molecule F{\"o}rster-resonance energy transfer (FRET) applications, far-red fluorescence-lifetime imaging microscopy (FLIM), and single-molecule localization microscopy (SMLM). These efforts define contexts in which eliminating cyanine isomerization provides meaningful benefits to imaging performance.},
  language  = {en}
}