@article{ChengMacIntyreRamadanAbdelmohsenetal.2015,
  author    = {Cheng, Cheng and MacIntyre, Lynsey and Ramadan Abdelmohsen, Usama and Horn, Hannes and Polymenakou, Paraskevi N. and Edrada-Ebel, RuAngelie and Hentschel, Ute},
  title     = {Biodiversity, Anti-Trypanosomal Activity Screening, and Metabolomic Profiling of Actinomycetes Isolated from Mediterranean Sponges},
  series = {PLoS One},
  volume    = {10},
  journal   = {PLoS One},
  number    = {9},
  doi       = {10.1371/journal.pone.0138528},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-125138},
  pages     = {e0138528},
  year      = {2015},
  abstract  = {Marine sponge-associated actinomycetes are considered as promising sources for the discovery of novel biologically active compounds. In the present study, a total of 64 actinomycetes were isolated from 12 different marine sponge species that had been collected offshore the islands of Milos and Crete, Greece, eastern Mediterranean. The isolates were affiliated to 23 genera representing 8 different suborders based on nearly full length 16S rRNA gene sequencing. Four putatively novel species belonging to genera Geodermatophilus, Microlunatus, Rhodococcus and Actinomycetospora were identified based on a 16S rRNA gene sequence similarity of < 98.5\% to currently described strains. Eight actinomycete isolates showed bioactivities against Trypanosma brucei brucei TC221 with half maximal inhibitory concentration (IC50) values <20 μg/mL. Thirty four isolates from the Milos collection and 12 isolates from the Crete collection were subjected to metabolomic analysis using high resolution LC-MS and NMR for dereplication purposes. Two isolates belonging to the genera Streptomyces (SBT348) and Micromonospora (SBT687) were prioritized based on their distinct chemistry profiles as well as their anti-trypanosomal activities. These findings demonstrated the feasibility and efficacy of utilizing metabolomics tools to prioritize chemically unique strains from microorganism collections and further highlight sponges as rich source for novel and bioactive actinomycetes.},
  language  = {en}
}
@phdthesis{Knauer2011,
  author    = {Knauer, Michael},
  title     = {Aufkl{\"a}rung der Konstitution und Konfiguration von Sekund{\"a}rmetaboliten und Syntheseprodukten mittels NMR, MS, HPLC, CD und ORD sowie Beitr{\"a}ge zur Totalsynthese bioaktiver axial chiraler Naturstoffe},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-70990},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2011},
  abstract  = {Im Laufe der Evolution entwickelten Pflanzen, Bakterien, Pilze und Tiere eine Vielzahl von Signal-, Boten- und Abwehrstoffen. Diese f{\"u}r die Organismen oft lebensnotwendigen Sekund{\"a}rmetabolite werden von den jeweiligen Produzenten oft sehr effizient und teilweise auch hoch stereoselektiv produziert. Die Effizienz und Selektivit{\"a}t, mit denen diese Stoffe mit den in der Natur zur Verf{\"u}gung stehenden biosynthetischen Mitteln hergestellt werden, ist f{\"u}r Chemiker im Labor, trotz eines breiten Methodenrepertoires, eine große Herausforderung und oft gelingt die Laborsynthese nur {\"u}ber viele Stufen sowie in geringen Ausbeuten und/oder mit schlechten Enantio- oder Diastereoselektivit{\"a}ten. Daher wird in der chemischen Synthese immer wieder die Neuentwicklung und Erweiterung von Methoden vorangetrieben. Neben der Synthese im Labor ist auch die Untersuchung von Biosynthesewegen sowie die Charakterisierung der daf{\"u}r verantwortlichen Enzyme ein interessantes Forschungsgebiet, um von der Natur zu lernen und diese Erkenntnisse f{\"u}r die Entwicklung neuer Synthesestrategien und Methoden zu nutzen. Viele der bislang isolierten Verbindungen zeigen neben den f{\"u}r die produzierenden Organismen wichtigen Wirkungen auch Aktivit{\"a}ten gegen f{\"u}r Menschen gef{\"a}hrliche Krankheitserreger. Daher ist die Isolierung und Strukturaufkl{\"a}rung neuer bioaktiver Naturstoffe als Leitstrukturen f{\"u}r neue Medikamente ein lohnendes Ziel f{\"u}r Wissenschaftler. In den letzten Jahren wurden aber immer h{\"a}ufiger bereits bekannte Verbindungen isoliert. Zur Vermeidung solcher Mehrfachisolierung werden auch die analytischen Methoden zur Identifikation und Strukturaufkl{\"a}rung stetig verbessert Einen wichtigen Stellenwert hat hierbei die Kopplung von Messger{\"a}ten wie z.B. MS oder NMR mit chromatographischen Anlagen wie GC, HPLC oder UPLC eingenommen. Die Kombination von Fl{\"u}ssigchromatographie-Anlagen mit chiroptischen Detektoren wie CD-Spektrometern erlaubt hierbei manchmal sogar die Zuordnung von Absolutkonfigurationen direkt aus dem Rohextrakt. Ziel der vorliegenden Arbeit war einerseits die Anwendung neuer Methoden bei der Entwicklung von Syntheserouten zu axialchiralen Naturstoffen und andererseits die Aufkl{\"a}rung der Konstitution und Konfiguration von Naturstoffen und synthetischen Verbindungen sowie die Untersuchung von Biosyntheseintermediaten.},
  subject      = {Totalsynthese},
  language  = {de}
}
@phdthesis{PimentelElardo2008,
  author    = {Pimentel Elardo, Sheila Marie},
  title     = {Novel anti-infective secondary metabolites and biosynthetic gene clusters from actinomycetes associated with marine sponges},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-40463},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2008},
  abstract  = {Marine sponges (Porifera) harbor diverse microbial communities within their mesohyl, among them representatives of the phylum Actinobacteria, commonly known as actinomycetes. Actinomycetes are prolific producers of pharmacologically important compounds and are responsible for producing the majority of antibiotics. The main aim of this Ph.D. study was to investigate the metabolic potential of the sponge-associated actinomycetes to produce novel anti-infective agents. The first aim was to cultivate actinomycetes derived from different marine sponges. 16S rDNA sequencing revealed that the strains belonged to diverse actinomycete genera such as Gordonia, Isoptericola, Micromonospora, Nocardiopsis, Saccharopolyspora and Streptomyces. Phylogenetic analyses and polyphasic characterization further revealed that two of these strains represent new species, namely Saccharopolyspora cebuensis strain SPE 10-1T (Pimentel-Elardo et al. 2008a) and Streptomyces axinellae strain Pol001T (Pimentel-Elardo et al. 2008b). Furthermore, secondary metabolite production of the actinomycete strains was investigated. The metabolites were isolated using a bioassay-guided purification scheme followed by structure elucidation using spectroscopic methods and subjected to an elaborate anti-infective screening panel. Several interesting compounds were isolated namely, the novel polyketides cebulactam A1 and A2 (Pimentel-Elardo et al. 2008c), a family of tetromycin compounds including novel derivatives, cyclodepsipeptide valinomycin, indolocarbazole staurosporine, diketopiperazine cycloisoleucylprolyl and butenolide. These compounds exhibited significant anti-parasitic as well as protease inhibitory activities. The third aim of this Ph.D. study was to identify biosynthetic gene clusters encoding for nonribosomal peptide synthetases (NRPS) and polyketide synthases (PKS) present in the actinomycete strains. Genomic library construction and sequencing revealed insights into the metabolic potential and biosynthetic pathways of selected strains. An interesting NRPS system detected in Streptomyces sp. strain Aer003 was found to be widely distributed in several sponge species, in an ascidian and in seawater and is postulated to encode for a large peptide molecule. Sequencing of the PKS gene cluster of Saccharopolyspora cebuensis strain SPE 10-1T allowed the prediction of the cebulactam biosynthetic pathway which utilizes 3-amino-5-hydroxybenzoic acid as the starter unit followed by successive condensation steps involving methylmalonyl extender units and auxiliary domains responsible for the polyketide assembly. In conclusion, this Ph.D. study has shown that diverse actinomycete genera are associated with marine sponges. The strains, two of them novel species, produced diverse chemical structures with interesting anti-infective properties. Lastly, the presence of biosynthetic gene clusters identified in this study substantiates the biosynthetic potential of actinomycetes to produce exploitable natural products and hopefully provides a sustainable supply of anti-infective compounds.},
  subject      = {Meeresschw{\"a}mme},
  language  = {en}
}
@article{RostasBlassmann2009,
  author    = {Rost{\´a}s, Michael and Blassmann, Katrin},
  title     = {Insects had it first: surfactants as a defence against predators},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-35031},
  year      = {2009},
  abstract  = {Insects have evolved an astonishing array of defences to ward off enemies. Well-known and widespread is the regurgitation of oral secretions (OS), fluids that repel attacking predators. In herbivores, the effectiveness of OS has been ascribed so far to the presence of deterrent secondary metabolites sequestered from the host plant. This notion implies, however, that generalists experience less protection on plants with low amounts of secondary metabolites or with compounds ineffective against potential enemies. Resolving the dilemma, we describe a novel defence mechanism that is independent of deterrents as it relies on the OS' intrinsic detergent properties. The OS of Spodoptera exigua (and other species) was found to be highly amphiphilic and well capable of wetting the hydrophobic cuticle of predatory ants. As a result, affected ants stopped attacking and engaged in extensive cleansing. The presence of surfactants was sufficient to explain the defensive character of herbivore OS. We hypothesize that detergency is a common but unrecognised mode of defence which provides a base level of protection that may or may not be further enhanced by plant-derived deterrents. Our study also proves that insects 'invented' the use of defensive surfactants long before modern agriculture had started applying them as insecticides.},
  subject      = {Pflanzenfressende Insekten},
  language  = {en}
}