@article{SchneiderKleinMielichSuessetal.2015, author = {Schneider, Johannes and Klein, Teresa and Mielich-S{\"u}ss, Benjamin and Koch, Gudrun and Franke, Christian and Kuipers, Oskar P. and Kov{\´a}cs, {\´A}kos T. and Sauer, Markus and Lopez, Daniel}, title = {Spatio-temporal Remodeling of Functional Membrane Microdomains Organizes the Signaling Networks of a Bacterium}, series = {PLoS Genetics}, volume = {11}, journal = {PLoS Genetics}, number = {4}, doi = {10.1371/journal.pgen.1005140}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-125577}, pages = {e1005140}, year = {2015}, abstract = {Lipid rafts are membrane microdomains specialized in the regulation of numerous cellular processes related to membrane organization, as diverse as signal transduction, protein sorting, membrane trafficking or pathogen invasion. It has been proposed that this functional diversity would require a heterogeneous population of raft domains with varying compositions. However, a mechanism for such diversification is not known. We recently discovered that bacterial membranes organize their signal transduction pathways in functional membrane microdomains (FMMs) that are structurally and functionally similar to the eukaryotic lipid rafts. In this report, we took advantage of the tractability of the prokaryotic model Bacillus subtilis to provide evidence for the coexistence of two distinct families of FMMs in bacterial membranes, displaying a distinctive distribution of proteins specialized in different biological processes. One family of microdomains harbors the scaffolding flotillin protein FloA that selectively tethers proteins specialized in regulating cell envelope turnover and primary metabolism. A second population of microdomains containing the two scaffolding flotillins, FloA and FloT, arises exclusively at later stages of cell growth and specializes in adaptation of cells to stationary phase. Importantly, the diversification of membrane microdomains does not occur arbitrarily. We discovered that bacterial cells control the spatio-temporal remodeling of microdomains by restricting the activation of FloT expression to stationary phase. This regulation ensures a sequential assembly of functionally specialized membrane microdomains to strategically organize signaling networks at the right time during the lifespan of a bacterium.}, language = {en} } @phdthesis{Roesch2002, author = {R{\"o}sch, Petra}, title = {Raman-spektroskopische Untersuchungen an Pflanzen und Mikroorganismen}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-3539}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2002}, abstract = {In dieser Arbeit werden Pflanzen, Pflanzengewebe, Pflanzenzellen und Mikro-organismen spektroskopisch untersucht und ihre Inhaltsstoffe unter minimaler Probenpr{\"a}paration im biologischen Gewebe direkt lokalisiert und identifiziert. Unter den verf{\"u}gbaren Schwingungs-spektroskopischen Methoden ist die Mikro-Raman-Spektroskopie f{\"u}r diese Fragestellungen besonders gut geeignet, da Wasser Raman-Spektren nur wenig beeinflusst. Daher kann mit Raman-spektroskopischen Methoden auch in stark wasserhaltigem Gewebe gemessen werden. Weiterhin erh{\"a}lt man mit der Mikro-Raman-Spektroskopie eine gute r{\"a}umliche Aufl{\"o}sung im sub-µm-Bereich, wodurch es m{\"o}glich ist, heterogene Proben zu untersuchen. Dar{\"u}ber hinaus kann die Mikro-Raman-Spektroskopie mit anderen Methoden, wie z. B. der oberfl{\"a}chenverst{\"a}rkten Raman-Spektroskopie (SERS), kombiniert werden. In pflanzlichen Zellen liegt eine Vielzahl von Substanzen in geringen Konzentrationen vor. Aufgrund der niedrigen Quantenausbeute des Raman-Effekts treten vor allem Substanzen, die eine Resonanz-Verst{\"a}rkung erfahren, in den Spektren hervor. Diese Substanzen, wie z. B. b-Carotin, k{\"o}nnen deshalb in geringen Konzentrationen detektiert werden. Der Schwerpunkt dieser Arbeit liegt in der Untersuchung von Sekund{\"a}r-Metaboliten wie Alkaloiden, Lipiden oder Terpenen, die in der Pflanze agglomerieren. Neben der Identifikation von Inhaltsstoffen, k{\"o}nnen die Raman-Spektren von Pflanzen f{\"u}r die chemotaxonomische Klassifizierung mit Hilfe der hierarchischen Clusteranalyse verwendet werden. Die Identifizierung von Mikroorganismen auch in sehr geringen Mengen (Monolage, einzelne Zellen) ist mit der Mikro-Raman-Spektroskopie nur unter bestimmten Voraussetzungen durchf{\"u}hrbar. F{\"u}r weitergehende Untersuchungen wird hier die SERS-Sonde oder ein TERS-Aufbau verwendet werden.}, subject = {Pflanzen}, language = {de} } @article{PalettaFichtnerStaricketal.2015, author = {Paletta, Daniel and Fichtner, Alina Suzann and Starick, Lisa and Porcelli, Steven A. and Savage, Paul B. and Herrmann, Thomas}, title = {Species Specific Differences of CD1d Oligomer Loading In Vitro}, series = {PLoS One}, volume = {10}, journal = {PLoS One}, number = {11}, doi = {10.1371/journal.pone.0143449}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-124879}, pages = {e0143449}, year = {2015}, abstract = {CD1d molecules are MHC class I-like molecules that present glycolipids to iNKT cells. The highly conserved interaction between CD1d:α-Galactosylceramide (αGC) complexes and the iNKT TCR not only defines this population of αβ T cells but can also be used for its direct identification. Therefore, CD1d oligomers are a widely used tool for iNKT cell related investigations. To this end, the lipid chains of the antigen have to be inserted into the hydrophobic pockets of the CD1d binding cleft, often with help of surfactants. In this study, we investigated the influence of different surfactants (Triton X-100, Tween 20, Tyloxapol) on in vitro loading of CD1d molecules derived from four different species (human, mouse, rat and cotton rat) with αGC and derivatives carrying modifications of the acyl-chain (DB01-1, PBS44) and a 6-acetamido-6-deoxy-addition at the galactosyl head group (PBS57). We also compared rat CD1d dimers with tetramers and staining of an iNKT TCR transductant was used as readout for loading efficacy. The results underlined the importance of CD1d loading efficacy for proper analysis of iNKT TCR binding and demonstrated the necessity to adjust loading conditions for each oligomer/glycolipid combination. The efficient usage of surfactants as a tool for CD1d loading was revealed to be species-specific and depending on the origin of the CD1d producing cells. Additional variation of surfactant-dependent loading efficacy between tested glycolipids was influenced by the acyl-chain length and the modification of the galactosyl head group with PBS57 showing the least dependence on surfactants and the lowest degree of species-dependent differences.}, language = {en} } @article{MeyerGerhardHartmannLodesetal.2021, author = {Meyer, Till Jasper and Gerhard-Hartmann, Elena and Lodes, Nina and Scherzad, Agmal and Hagen, Rudolf and Steinke, Maria and Hackenberg, Stephan}, title = {Pilot study on the value of Raman spectroscopy in the entity assignment of salivary gland tumors}, series = {PLoS One}, volume = {16}, journal = {PLoS One}, number = {9}, doi = {10.1371/journal.pone.0257470}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-264736}, year = {2021}, abstract = {Background The entity assignment of salivary gland tumors (SGT) based on histomorphology can be challenging. Raman spectroscopy has been applied to analyze differences in the molecular composition of tissues. The aim of this study was to evaluate the suitability of RS for entity assignment in SGT. Methods Raman data were collected in deparaffinized sections of pleomorphic adenomas (PA) and adenoid cystic carcinomas (ACC). Multivariate data and chemometric analysis were completed using the Unscrambler software. Results The Raman spectra detected in ACC samples were mostly assigned to nucleic acids, lipids, and amides. In a principal component-based linear discriminant analysis (LDA) 18 of 20 tumor samples were classified correctly. Conclusion In this proof of concept study, we show that a reliable SGT diagnosis based on LDA algorithm appears possible, despite variations in the entity-specific mean spectra. However, a standardized workflow for tissue sample preparation, measurement setup, and chemometric algorithms is essential to get reliable results.}, language = {en} } @article{KarnatiGuntasRajendranetal.2022, author = {Karnati, Srikanth and Guntas, Gulcan and Rajendran, Ranjithkumar and Shityakov, Sergey and H{\"o}ring, Marcus and Liebisch, Gerhard and Kosanovic, Djuro and Erg{\"u}n, S{\"u}leyman and Nagai, Michiaki and F{\"o}rster, Carola Y.}, title = {Quantitative lipidomic analysis of Takotsubo syndrome patients' serum}, series = {Frontiers in Cardiovascular Medicine}, volume = {9}, journal = {Frontiers in Cardiovascular Medicine}, number = {797154}, issn = {2297-055X}, doi = {10.3389/fcvm.2022.797154}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-270832}, year = {2022}, abstract = {Takotsubo syndrome (TTS), also known as the transient left ventricular apical ballooning syndrome, is in contemporary times known as novel acute cardiac syndrome. It is characterized by transient left ventricular apical akinesis and hyperkinesis of the basal left ventricular portions. Although the precise etiology of TTS is unknown, events like the sudden release of stress hormones, such as the catecholamines and the increased inflammatory status might be plausible causes leading to the cardiovascular pathologies. Recent studies have highlighted that an imbalance in lipid accumulation might promote a deviant immune response as observed in TTS. However, there is no information on comprehensive profiling of serum lipids of TTS patients. Therefore, we investigated a detailed quantitative lipid analysis of TTS patients using ES-MSI. Our results showed significant differences in the majority of lipid species composition in the TTS patients compared to the control group. Furthermore, the computational analyses presented was able to link the altered lipids to the pro-inflammatory cytokines and disseminate possible mechanistic pathways involving TNFα and IL-6. Taken together, our study provides an extensive quantitative lipidome of TTS patients, which may provide a valuable Pre-diagnostic tool. This would facilitate the elucidation of the underlying mechanisms of the disease and to prevent the development of TTS in the future.}, language = {en} } @article{KadochovaFrouzRoces2017, author = {Kadochov{\´a}, Štěp{\´a}nka and Frouz, Jan and Roces, Flavio}, title = {Sun basking in red wood ants Formica polyctena (Hymenoptera, Formicidae): Individual behaviour and temperature-dependent respiration rates}, series = {PLoS ONE}, volume = {12}, journal = {PLoS ONE}, number = {1}, doi = {10.1371/journal.pone.0170570}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-171936}, year = {2017}, abstract = {In early spring, red wood ants Formica polyctena are often observed clustering on the nest surface in large numbers basking in the sun. It has been hypothesized that sun-basking behaviour may contribute to nest heating because of both heat carriage into the nest by sunbasking workers, and catabolic heat production from the mobilization of the workers' lipid reserves. We investigated sun-basking behaviour in laboratory colonies of F. polyctena exposed to an artificial heat source. Observations on identified individuals revealed that not all ants bask in the sun. Sun-basking and non-sun-basking workers did not differ in body size nor in respiration rates. The number of sun-basking ants and the number of their visits to the hot spot depended on the temperature of both the air and the hot spot. To investigate whether sun basking leads to a physiological activation linked with increased lipolysis, we measured respiration rates of individual workers as a function of temperature, and compared respiration rates of sun-basking workers before and two days after they were allowed to expose themselves to a heat source over 10 days, at self-determined intervals. As expected for ectothermic animals, respiration rates increased with increasing temperatures in the range 5 to 35˚C. However, the respiration rates of sun-basking workers measured two days after a long-term exposure to the heat source were similar to those before sun basking, providing no evidence for a sustained increase of the basal metabolic rates after prolonged sun basking. Based on our measurements, we argue that self-heating of the nest mound in early spring has therefore to rely on alternative heat sources, and speculate that physical transport of heat in the ant bodies may have a significant effect.}, language = {en} }