@phdthesis{Rehman2018,
  author    = {Rehman, Saba},
  title     = {Identification of accessible and closed substrate binding sites in the outward open cleft of rat Organic Cation Transporter 1 (rOCT1)},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-169992},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2018},
  abstract  = {The present study was conducted on the rOCT1, a member of SLC22 family. Structurally, it consists of 12 membrane spanning α-helices with both N- and C-termini intracellular. Studies done so far, through tracer uptake and inhibition, reconstitution of rOCT1 in nanodiscs and proteoliposomes and voltage-clamp fluorometry, have identified the main amino acids in the cleft of rOCT1 that interact in a critical manner with the substrates/inhibitors either directly or indirectly. Homology modeling studies have also supported these observations. In the present study we aimed at measuring the binding of substrates MPP+ and TEA+ to rOCT1 at 0oC in order to establish the amino acids in the cleft region that interact with the substrate when the transporter is frozen in the outward-open conformation. Previously identified crucial amino acids (Asp475, Phe160, Leu447, Arg440, Trp218 and Tyr222) were selected for the study. rOCT1 wild-type and its mutants were stably expressed in HEK293 cells and these cells were used for the binding measurements with the radioactive substrate (MPP+ or TEA+) at 0°C in Mg-Ca-PBS buffer as described in "Materials and Methods" section in detail. rOCT1 wild-type revealed for MPP+-binding a KD which was not significantly different from the corresponding Km value. Also, after addition of 10 nM non-radioactive MPP+, an initial increase of about 20\% in bound MPP+ was observed. The results indicate that the Km for transport is dependent on the binding of MPP+ to the outward-open conformation and hints at the possibility of allosteric interaction between the binding sites. Mutations at position Trp218, Phe160 and Asp475 resulted in a change in the KD value. Trp218 mutations also showed an allosteric increase similar to the rOCT1 wild-type. This study suggests that these amino acids are located at a critical position in the outward-open conformation for MPP+ transport. TEA+-binding could not be observed in rOCT1 wild-type, indicating that the binding site is perhaps inaccessible for TEA+ in frozen outward-open state. The mutants D475E, F160A, L447F, R440K and Y222F showed a very low affinity binding with a very high KD value as compared to the corresponding Km values indicating that the transporter might have different affinities for extra-cellular binding alone and for the complete transport process especially if temperature is the limiting factor. Substrate inhibition studies done using both MPP+ and TEA+ have confirmed the existence of overlapping binding sites for these two ligands. This study has confirmed the direct interaction of Trp218, Phe160, Asp475 with MPP+ and Phe160, Asp475, Leu447, Arg440 and Tyr222 with TEA+ in the outward-open conformation.},
  subject      = {Kation},
  language  = {en}
}
@phdthesis{Shatskaya2006,
  author    = {Shatskaya, Natalia},
  title     = {Identification of amino acids within the substrate binding region of organic cation transporters (OCTZs) that are involved in binding of corticosterone},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-20430},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2006},
  abstract  = {The polyspecific organic cation transporters (OCT) are involved in the elimination and distribution of drugs, environmental toxins, and endogenous organic cations including monoamine neurotransmitters. Steroid hormones inhibit organic cation transport by the three OCT subtypes with different affinities showing distinct species difference; for example, the IC50 values for corticosterone inhibition of cation uptake by transporters rOCT1 and rOCT2 are ~150\&\#956;M and ~4 \&\#956;M, respectively. By introducing domains and amino acids from rOCT2 into rOCT1, we identified three amino acids in the presumed 10th TMD of rOCT2 which are responsible for the higher affinity of corticosterone in comparison to rOCT1. This is the first study which revealed the components of the binding site for corticosterone in OCTs. The evidence is presented that these amino acids (alanine 443, leucine 447, and glutamine 448 in rOCT1 and isoleucine 443, tyrosine 447, and glutamate 448 in rOCT2) are probably located within the substrate binding region of OCTs since the affinity of transported cations was increased together with the affinity of corticosterone. In the double mutant rOCT1(L447Y/Q448E) the IC50 value for the inhibition of [3H]MPP (0.1 \&\#956;M) uptake by corticosterone (24 ± 4 \&\#956;M) was significantly higher compared to the IC50 value for inhibition of [14C]TEA (10 \&\#956;M) uptake (5.3 ± 1.7 \&\#956;M), indicating an allosteric interaction between transported substrate and corticosterone. The data suggest that more than one compound can bind simultaneously to the substrate binding region. These results confirm previous suggestion that binding of substrates and inhibitors to OCTs involves interaction with a comparatively large surface that may include multiple binding domains rather than with a structurally restricted single binding site.},
  subject      = {Kation},
  language  = {en}
}