@article{DorjiSchuldtNeudametal.2021, author = {Dorji, Yonten and Schuldt, Bernhard and Neudam, Liane and Dorji, Rinzin and Middleby, Kali and Isasa, Emilie and K{\"o}rber, Klaus and Ammer, Christian and Annigh{\"o}fer, Peter and Seidel, Dominik}, title = {Three-dimensional quantification of tree architecture from mobile laser scanning and geometry analysis}, series = {Trees}, volume = {35}, journal = {Trees}, number = {4}, issn = {0931-1890}, doi = {10.1007/s00468-021-02124-9}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-307501}, pages = {1385-1398}, year = {2021}, abstract = {Key message Mobile laser scanning and geometrical analysis revealed relationships between tree geometry and seed dispersal mechanism, latitude of origin, as well as growth. Abstract The structure and dynamics of a forest are defined by the architecture and growth patterns of its individual trees. In turn, tree architecture and growth result from the interplay between the genetic building plans and environmental factors. We set out to investigate whether (1) latitudinal adaptations of the crown shape occur due to characteristic solar elevation angles at a species' origin, (2) architectural differences in trees are related to seed dispersal strategies, and (3) tree architecture relates to tree growth performance. We used mobile laser scanning (MLS) to scan 473 trees and generated three-dimensional data of each tree. Tree architectural complexity was then characterized by fractal analysis using the box-dimension approach along with a topological measure of the top heaviness of a tree. The tree species studied originated from various latitudinal ranges, but were grown in the same environmental settings in the arboretum. We found that trees originating from higher latitudes had significantly less top-heavy geometries than those from lower latitudes. Therefore, to a certain degree, the crown shape of tree species seems to be determined by their original habitat. We also found that tree species with wind-dispersed seeds had a higher structural complexity than those with animal-dispersed seeds (p < 0.001). Furthermore, tree architectural complexity was positively related to the growth performance of the trees (p < 0.001). We conclude that the use of 3D data from MLS in combination with geometrical analysis, including fractal analysis, is a promising tool to investigate tree architecture.}, language = {en} } @article{DornHerzberg2021, author = {Dorn, Franziska and Herzberg, Moriz}, title = {Response to Letter to the Editor "Keeping Late Thrombectomy Imaging Protocols Simple to Avoid Analysis Paralysis"}, series = {Clinical Neuroradiology}, volume = {31}, journal = {Clinical Neuroradiology}, number = {3}, issn = {1869-1439}, doi = {10.1007/s00062-021-01091-5}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-307023}, pages = {813-814}, year = {2021}, language = {en} } @article{DornerMostafaSatalecka2021, author = {Dorner, Daniela and Mostaf{\´a}, Miguel and Satalecka, Konstancja}, title = {High-energy alerts in the multi-messenger era}, series = {Universe}, volume = {7}, journal = {Universe}, number = {11}, issn = {2218-1997}, doi = {10.3390/universe7110393}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-248496}, year = {2021}, abstract = {The observation of electromagnetic counterparts to both high energy neutrinos and gravitational waves marked the beginning of a new era in astrophysics. The multi-messenger approach allows us to gain new insights into the most energetic events in the Universe such as gamma-ray bursts, supernovas, and black hole mergers. Real-time multi-messenger alerts are the key component of the observational strategies to unravel the transient signals expected from astrophysical sources. Focusing on the high-energy regime, we present a historical perspective of multi-messenger observations, the detectors and observational techniques used to study them, the status of the multi-messenger alerts and the most significant results, together with an overview of the future prospects in the field.}, language = {en} } @article{DoryabTaskinStahlhutetal.2021, author = {Doryab, Ali and Taskin, Mehmet Berat and Stahlhut, Philipp and Schr{\"o}ppel, Andreas and Orak, Sezer and Voss, Carola and Ahluwalia, Arti and Rehberg, Markus and Hilgendorff, Anne and St{\"o}ger, Tobias and Groll, J{\"u}rgen and Schmid, Otmar}, title = {A Bioinspired in vitro Lung Model to Study Particokinetics of Nano-/Microparticles Under Cyclic Stretch and Air-Liquid Interface Conditions}, series = {Frontiers in Bioengineering and Biotechnology}, volume = {9}, journal = {Frontiers in Bioengineering and Biotechnology}, issn = {2296-4185}, doi = {10.3389/fbioe.2021.616830}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-223830}, year = {2021}, abstract = {Evolution has endowed the lung with exceptional design providing a large surface area for gas exchange area (ca. 100 m\(^{2}\)) in a relatively small tissue volume (ca. 6 L). This is possible due to a complex tissue architecture that has resulted in one of the most challenging organs to be recreated in the lab. The need for realistic and robust in vitro lung models becomes even more evident as causal therapies, especially for chronic respiratory diseases, are lacking. Here, we describe the Cyclic In VItro Cell-stretch (CIVIC) "breathing" lung bioreactor for pulmonary epithelial cells at the air-liquid interface (ALI) experiencing cyclic stretch while monitoring stretch-related parameters (amplitude, frequency, and membrane elastic modulus) under real-time conditions. The previously described biomimetic copolymeric BETA membrane (5 μm thick, bioactive, porous, and elastic) was attempted to be improved for even more biomimetic permeability, elasticity (elastic modulus and stretchability), and bioactivity by changing its chemical composition. This biphasic membrane supports both the initial formation of a tight monolayer of pulmonary epithelial cells (A549 and 16HBE14o\(^{-}\)) under submerged conditions and the subsequent cell-stretch experiments at the ALI without preconditioning of the membrane. The newly manufactured versions of the BETA membrane did not improve the characteristics of the previously determined optimum BETA membrane (9.35\% PCL and 6.34\% gelatin [w/v solvent]). Hence, the optimum BETA membrane was used to investigate quantitatively the role of physiologic cyclic mechanical stretch (10\% linear stretch; 0.33 Hz: light exercise conditions) on size-dependent cellular uptake and transepithelial transport of nanoparticles (100 nm) and microparticles (1,000 nm) for alveolar epithelial cells (A549) under ALI conditions. Our results show that physiologic stretch enhances cellular uptake of 100 nm nanoparticles across the epithelial cell barrier, but the barrier becomes permeable for both nano- and micron-sized particles (100 and 1,000 nm). This suggests that currently used static in vitro assays may underestimate cellular uptake and transbarrier transport of nanoparticles in the lung.}, language = {en} } @article{DoryabTaskinStahlhutetal.2021, author = {Doryab, Ali and Taskin, Mehmet Berat and Stahlhut, Philipp and Schr{\"o}ppel, Andreas and Wagner, Darcy E. and Groll, J{\"u}rgen and Schmid, Otmar}, title = {A Biomimetic, Copolymeric Membrane for Cell-Stretch Experiments with Pulmonary Epithelial Cells at the Air-Liquid Interface}, series = {Advanced Functional Materials}, volume = {31}, journal = {Advanced Functional Materials}, number = {10}, doi = {10.1002/adfm.202004707}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-225645}, year = {2021}, abstract = {Chronic respiratory diseases are among the leading causes of death worldwide, but only symptomatic therapies are available for terminal illness. This in part reflects a lack of biomimetic in vitro models that can imitate the complex environment and physiology of the lung. Here, a copolymeric membrane consisting of poly(ε-)caprolactone and gelatin with tunable properties, resembling the main characteristics of the alveolar basement membrane is introduced. The thin bioinspired membrane (≤5 μm) is stretchable (up to 25\% linear strain) with appropriate surface wettability and porosity for culturing lung epithelial cells under air-liquid interface conditions. The unique biphasic concept of this membrane provides optimum characteristics for initial cell growth (phase I) and then switch to biomimetic properties for cyclic cell-stretch experiments (phase II). It is showed that physiologic cyclic mechanical stretch improves formation of F-actin cytoskeleton filaments and tight junctions while non-physiologic over-stretch induces cell apoptosis, activates inflammatory response (IL-8), and impairs epithelial barrier integrity. It is also demonstrated that cyclic physiologic stretch can enhance the cellular uptake of nanoparticles. Since this membrane offers considerable advantages over currently used membranes, it may lead the way to more biomimetic in vitro models of the lung for translation of in vitro response studies into clinical outcome.}, language = {en} } @phdthesis{Dose2021, author = {Dose, Titus}, title = {Balance Problems for Integer Circuits and Separations of Relativized Conjectures on Incompleteness in Promise Classes}, doi = {10.25972/OPUS-22220}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-222209}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {This thesis is divided into two parts. In the first part we contribute to a working program initiated by Pudl{\´a}k (2017) who lists several major complexity theoretic conjectures relevant to proof complexity and asks for oracles that separate pairs of corresponding relativized conjectures. Among these conjectures are: - \(\mathsf{CON}\) and \(\mathsf{SAT}\): coNP (resp., NP) does not contain complete sets that have P-optimal proof systems. - \(\mathsf{CON}^{\mathsf{N}}\): coNP does not contain complete sets that have optimal proof systems. - \(\mathsf{TFNP}\): there do not exist complete total polynomial search problems (also known as total NP search problems). - \(\mathsf{DisjNP}\) and \(\mathsf{DisjCoNP}\): There do not exist complete disjoint NP pairs (coNP pairs). - \(\mathsf{UP}\): UP does not contain complete problems. - \(\mathsf{NP}\cap\mathsf{coNP}\): \(\mathrm{NP}\cap\mathrm{coNP}\) does not contain complete problems. - \(\mathrm{P}\ne\mathrm{NP}\). We construct several of the oracles that Pudl{\´a}k asks for. In the second part we investigate the computational complexity of balance problems for \(\{-,\cdot\}\)-circuits computing finite sets of natural numbers (note that \(-\) denotes the set difference). These problems naturally build on problems for integer expressions and integer circuits studied by Stockmeyer and Meyer (1973), McKenzie and Wagner (2007), and Glaßer et al. (2010). Our work shows that the balance problem for \(\{-,\cdot\}\)-circuits is undecidable which is the first natural problem for integer circuits or related constraint satisfaction problems that admits only one arithmetic operation and is proven to be undecidable. Starting from this result we precisely characterize the complexity of balance problems for proper subsets of \(\{-,\cdot\}\). These problems turn out to be complete for one of the classes L, NL, and NP.}, subject = {NP-vollst{\"a}ndiges Problem}, language = {en} } @article{Dosoo2021, author = {Dosoo, Korshi}, title = {Healing traditions in Coptic magical texts}, series = {Trends in Classics}, volume = {13}, journal = {Trends in Classics}, number = {1}, issn = {1866-7473}, doi = {10.1515/tc-2021-0003}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-251219}, pages = {44 -- 94}, year = {2021}, abstract = {Within the 'market of healing' of Christian Egypt (here broadly considered as the fourth through twelfth centuries CE), 'magical' practitioners represent an elusive yet recurrent category. This article explores the evidence for magical healing from three perspectives - first, literary texts which situate 'magicians' in competition with medical and ecclesiastical healing; second, the papyrological evidence of Coptic-language magical texts, which provide evidence for concepts of disease, wellness, and their mediation; and finally confronting the question of how these healing traditions might be understood within the methodologically materialistic framework of academic history, using the concepts of placebo and healing as a performance.}, language = {en} } @article{DrozdSaenkoBranovanetal.2021, author = {Drozd, Valentina and Saenko, Vladimir and Branovan, Daniel I. and Brown, Kate and Yamashita, Shunichi and Reiners, Christoph}, title = {A search for causes of rising incidence of differentiated thyroid cancer in children and adolescents after Chernobyl and Fukushima: comparison of the clinical features and their relevance for treatment and prognosis}, series = {International Journal of Environmental Research and Public Health}, volume = {18}, journal = {International Journal of Environmental Research and Public Health}, number = {7}, issn = {1660-4601}, doi = {10.3390/ijerph18073444}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-234247}, year = {2021}, abstract = {The incidence of differentiated thyroid cancer (DTC) is steadily increasing globally. Epidemiologists usually explain this global upsurge as the result of new diagnostic modalities, screening and overdiagnosis as well as results of lifestyle changes including obesity and comorbidity. However, there is evidence that there is a real increase of DTC incidence worldwide in all age groups. Here, we review studies on pediatric DTC after nuclear accidents in Belarus after Chernobyl and Japan after Fukushima as compared to cohorts without radiation exposure of those two countries. According to the Chernobyl data, radiation-induced DTC may be characterized by a lag time of 4-5 years until detection, a higher incidence in boys, in children of youngest age, extrathyroidal extension and distant metastases. Radiation doses to the thyroid were considerably lower by appr. two orders of magnitude in children and adolescents exposed to Fukushima as compared to Chernobyl. In DTC patients detected after Fukushima by population-based screening, most of those characteristics were not reported, which can be taken as proof against the hypothesis, that radiation is the (main) cause of those tumors. However, roughly 80\% of the Fukushima cases presented with tumor stages higher than microcarcinomas pT1a and 80\% with lymph node metastases pN1. Mortality rates in pediatric DTC patients are generally very low, even at higher tumor stages. However, those cases considered to be clinically relevant should be followed-up carefully after treatment because of the risk of recurrencies which is expected to be not negligible. Considering that thyroid doses from the Fukushima accident were quite small, it makes sense to assess the role of other environmental and lifestyle-related factors in thyroid carcinogenesis. Well-designed studies with assessment of radiation doses from medical procedures and exposure to confounders/modifiers from the environment as e.g., nitrate are required to quantify their combined effect on thyroid cancer risk.}, language = {en} } @article{DuMaYanez‐Serranoetal.2021, author = {Du, Baoguo and Ma, Yuhua and Y{\´a}{\~n}ez-Serrano, Ana Maria and Arab, Leila and Fasbender, Lukas and Alfarraj, Saleh and Albasher, Gadah and Hedrich, Rainer and White, Philip J. and Werner, Christiane and Rennenberg, Heinz}, title = {Physiological responses of date palm (Phoenix dactylifera) seedlings to seawater and flooding}, series = {New Phytologist}, volume = {229}, journal = {New Phytologist}, number = {6}, doi = {10.1111/nph.17123}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-228226}, pages = {3318 -- 3329}, year = {2021}, abstract = {In their natural environment along coast lines, date palms are exposed to seawater inundation and, hence, combined stress by salinity and flooding. To elucidate the consequences of this combined stress on foliar gas exchange and metabolite abundances in leaves and roots, date palm seedlings were exposed to flooding with seawater and its major constituents under controlled conditions. Seawater flooding significantly reduced CO\(_{2}\) assimilation, transpiration and stomatal conductance, but did not affect isoprene emission. A similar effect was observed upon NaCl exposure. By contrast, flooding with distilled water or MgSO\(_{4}\) did not affect CO\(_{2}\)/H\(_{2}\)O gas exchange or stomatal conductance significantly, indicating that neither flooding itself, nor seawater sulfate, contributed greatly to stomatal closure. Seawater exposure increased Na and Cl contents in leaves and roots, but did not affect sulfate contents significantly. Metabolite analyses revealed reduced abundances of foliar compatible solutes, such as sugars and sugar alcohols, whereas nitrogen compounds accumulated in roots. Reduced transpiration upon seawater exposure may contribute to controlling the movement of toxic ions to leaves and, therefore, can be seen as a mechanism to cope with salinity. The present results indicate that date palm seedlings are tolerant towards seawater exposure to some extent, and highly tolerant to flooding.}, language = {en} } @phdthesis{Duan2021, author = {Duan, Xiaodong}, title = {Development of new channelrhodopsin versions with enhanced plasma membrane targeting and high calcium/sodium conductance}, doi = {10.25972/OPUS-18839}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-188397}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {The technique to manipulate cells or living animals by illumination after gene transfer of light-sensitive proteins is called optogenetics. Successful optogenetics started with the use of the light-gated cation channel channelrhodopsin-2 (ChR2). After early demonstrations of the power of ChR2, further light-sensitive ion channels and ion pumps were recruited to the optogenetic toolbox. Furthermore, mutations and chimera of ChR2 improved its versatility. However, there is still a need for improved optogenetic tools, e.g. with higher permeability for calcium or better expression in the plasma membrane. In this thesis, my work focuses on the design of highly functional channelrhodopsins with enhanced Na+ and Ca2+ conductance. First, I tested different N-terminal signal peptides to improve the plasma membrane targeting of Channelrhodopsins. We found that a N-terminal peptide, named LR, could improve the plasma membrane targeting of many rhodopsins. Modification with LR contributed to three to ten-fold larger photocurrents (than that of the original version) of multiple channelrhodopsins, like ChR2 from C. reinhardtii (CrChR2), PsChR, Chrimson, CheRiff, CeChR, ACRs, and the light-activated pump rhodopsins KR2, Jaw, HR. Second, by introducing point mutation, I could further improve the light sensitivity and photocurrent of different channelrhodopsins. For instance, ChR2-XXM 2.0, ChR2-XXL 2.0 and PsChR D139H 2.0 exhibited hundred times larger photocurrents than wild type ChR2 and they show high light sensitivity. Also, the Ca2+ permeable channelrhodopsins PsCatCh 2.0f and PsCatCh 2.0e show very large photocurrents and fast kinetics. In addition, I also characterized a novel bi-stable CeChR (from the acidophilic green alga Chlamydomonas eustigma) with a much longer closing time. Third, I analysed the ion selectivity of different ChRs, which provides a basis for rational selection of channelrhodopsins for different experimental purposes. I demonstrate that ChR2, Chronos, Chrimson, CheRiff and CeChR are highly proton conductive, compared with wild type PsChR. Interestingly, Chronos has the lowest potassium conductance among these channelrhodopsins. Furthermore, I found that mutation of an aspartate in TM4 of ChR2 (D156) and PsChR (D139) to histidine obviously increased both the sodium and calcium permeability while proton conductance was reduced. PsChR D139H 2.0 has the largest sodium conductance of any published channelrhodopsin variants. Additionally, I generated PsCatCh 2.0e which exhibits a ten-fold larger calcium current than the previously reported Ca2+ transporting CrChR2 mutant CatCh. In summary, my research work 1.) described strategies for improving plasma membrane trafficking efficiency of opsins; 2.) yielded channelrhodopsins with fast kinetics or high light sensitivity; 3.) provided optogenetic tools with improved calcium and sodium conductance. We could also improve the performance of channelrhodopsins with distinct action spectra, which will facilitate two-color neural excitation, both in-vitro and in-vivo.}, subject = {Optogenetik}, language = {en} }