@phdthesis{Messer2002,
  author    = {Messer, Kim Sven},
  title     = {Isolierung, Strukturaufkl{\"a}rung und Beitr{\"a}ge zur Synthese von Naturstoffen aus tropischen Heilpflanzen sowie Etablierung chiraler On-line-Analytik},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-3774},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2002},
  abstract  = {Die Natur er{\"o}ffnet mit der strukturellen Vielfalt ihrer Sekund{\"a}rmetaboliten einen nahezu unersch{\"o}pflichen Pool in der Leit- und Wirkstoffsuche nach pharmazeutisch wirksamen Substanzen. Insbesondere die Alkaloide zeichnen sich durch ihre biologischen Wirksamkeiten aus. Eine noch junge, sehr vielversprechende Substanzklasse stellen die sogenannten Naphthylisochinolin-Alkaloide dar, die bislang ausschließlich in den beiden Pflanzenfamilien der Ancistrocladaceae und Dioncophyllaceae gefunden wurden. Im Rahmen dieser Arbeit wurden Extrakte von Ancistrocladus congolensis (A.c.), Triphyophyllum peltatum (T.p.) und Dioncophyllum thollonii (D.t.) untersucht. Hierbei gelang die Isolation und Strukturaufkl{\"a}rung des bereits bekannten Korupensamin A (A.c.) sowie von sechs bislang unbekannten Alkaloiden: Ancistrocongolin A-D (A.c.), Habropetalin A (T.p.) und Dioncophyllin E (D.t.). Zu dem letztgenannten wurde ein synthetischer Zugang evaluiert. Alle neu isolierten Naturstoffe wurden einer biologischen Aktivit{\"a}tstestung zugef{\"u}hrt. Im analytischen Bereich der Arbeit gelang die vollst{\"a}ndige Strukturzuordnung des bereits seit mehreren Jahren bekannten Tetralons Isoshinanolon, was somit nun ein einfache Analytik f{\"u}r die Bestimmung der absoluten Konfiguration an die Hand gibt. Des Weiteren wurde die HPLC-CD-Kopplung als schnelle und praktikable chirale on-line-Analytik an mehreren Beispielen (Phyllin, TaClo, Murrastifolin F, Cyclorocaglamid, Thalidomid) sowohl im phytochemischen als auch synthetischen Bereich eingef{\"u}hrt und etabliert.},
  subject      = {Naphthylisochinolinalkaloide},
  language  = {de}
}
@article{MessiNdjokoIosetHertleinAmslingeretal.2012,
  author    = {Messi, Bernadette Biloa and Ndjoko-Ioset, Karine and Hertlein-Amslinger, Barbara and Lannang, Alain Meli and Nkengfack, Augustin E. and Wolfender, Jean-Luc and Hostettmann, Kurt and Bringmann, Gerhard},
  title     = {Preussianone, a New Flavanone-Chromone Biflavonoid from Garcinia preussii Engl.},
  series = {Molecules},
  volume    = {17},
  journal   = {Molecules},
  number    = {5},
  doi       = {10.3390/molecules17056114},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-130881},
  pages     = {6114 - 6125},
  year      = {2012},
  abstract  = {A new flavanone-chromone biflavonoid, preussianone (1), has been isolated from the leaves of Garcinia preussii, along with four known biflavonoids. The absolute stereostructures were elucidated by chemical, spectroscopic, and chiroptical methods. The biological properties of the new biflavonoid against several bacterial strains were evaluated.},
  language  = {en}
}
@article{MetropoulosEngelsPeyerimhoff1993,
  author    = {Metropoulos, B. and Engels, Bernd and Peyerimhoff, S.D.},
  title     = {On the chemi-ionization reaction O + CH ----> HCO\(^+\)+ e\(^-\). Coollinear O-CH Approach},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-58963},
  year      = {1993},
  abstract  = {We have investigated theoretically the importance of the O(\(^3\)P)+CH(a\(^4\sum^-\)) and the O(\(^3\)P)+CH(X\(^2\Pi\)) channels in the collinear chemi-ionization reaction O+CH->HCO\(^+\) +e\(^-\). We have found that both channels may lead to chemi-ionization via favorable Franck-Condon overlaps with the states ofthe ionic species.},
  subject      = {Organische Chemie},
  language  = {en}
}
@phdthesis{MezaChincha2021,
  author    = {Meza Chincha, Ana Lucia},
  title     = {Catalytic Water Oxidation with Functionalized Ruthenium Macrocycles},
  doi       = {10.25972/OPUS-20962},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-209620},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2021},
  abstract  = {In light of the rapidly increasing global demand of energy and the negative effects of climate change, innovative solutions that allow an efficient transition to a carbon-neutral economy are urgently needed. In this context, artificial photosynthesis is emerging as a promising technology to enable the storage of the fluctuating energy of sunlight in chemical bonds of transportable "solar fuels". Thus, in recent years much efforts have been devoted to the development of robust water oxidation catalysts (WOCs) leading to the discovery of the highly reactive Ru(bda) (bda: 2,2'-bipyridine-6,6'-dicarboxylic acid) catalyst family. The aim of this thesis was the study of chemical and photocatalytic water oxidation with functionalized Ruthenium macrocycles to explore the impact of substituents on molecular properties and catalytic activities of trinuclear macrocyclic Ru(bda) catalysts. A further objective of this thesis comprises the elucidation of factors that influence the light-driven water oxidation process with this novel class of supramolecular WOCs.},
  subject      = {Rutheniumkomplexe},
  language  = {en}
}
@article{MezaChinchaLindnerSchindleretal.2020,
  author    = {Meza-Chincha, Ana-Lucia and Lindner, Joachim O. and Schindler, Dorothee and Schmidt, David and Krause, Ana-Maria and R{\"o}hr, Merle I. S. and Mitrić, Roland and W{\"u}rthner, Frank},
  title     = {Impact of substituents on molecular properties and catalytic activities of trinuclear Ru macrocycles in water oxidation},
  issn      = {2041-6539},
  doi       = {10.1039/d0sc01097a},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-204653},
  year      = {2020},
  abstract  = {Herein we report a broad series of new trinuclear supramolecular Ru(bda) macrocycles bearing different substituents at the axial or equatorial ligands which enabled investigation of substituent effects on the catalytic activities in chemical and photocatalytic water oxidation. Our detailed investigations revealed that the activities of these functionalized macrocycles in water oxidation are significantly affected by the position at which the substituents were introduced. Interestingly, this effect could not be explained based on the redox properties of the catalysts since these are not markedly influenced by the functionalization of the ligands. Instead, detailed investigations by X-ray crystal structure analysis and theoretical simulations showed that conformational changes imparted by the substituents are responsible for the variation of catalytic activities of the Ru macrocycles. For the first time, macrocyclic structure of this class of water oxidation catalysts is unequivocally confirmed and experimental indication for a hydrogen-bonded water network present in the cavity of the macrocycles is provided by crystal structure analysis. We ascribe the high catalytic efficiency of our Ru(bda) macrocycles to cooperative proton abstractions facilitated by such a network of preorganized water molecules in their cavity, which is reminiscent of catalytic activities of enzymes at active sites.},
  language  = {en}
}
@phdthesis{Michail2021,
  author    = {Michail, Evripidis},
  title     = {Design and Development of a Two-Photon Absorption Induced Fluorescence Spectrometer and the Investigation of Nonlinear Optical Properties of Organic Chromophores},
  doi       = {10.25972/OPUS-24218},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-242185},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2021},
  abstract  = {Main objectives of the present dissertation can be divided in two parts. The first part deals with setting up a spectroscopic technique for reliable and accurate measurements of the two-photon absorption (2PA) cross section spectra. In the second part, this firmly established experimental technique together with conventional spectroscopic characterization, quantum-chemical computations and theoretical modelling calculations was combined and therefore used as a tool to gain information for the so-called structure-property relationship through several molecular compounds.},
  subject      = {Nonlinear Optical Properties of Organic Materials},
  language  = {en}
}
@article{MieczkowskiSteinmetzgerBessietal.2021,
  author    = {Mieczkowski, Mateusz and Steinmetzger, Christian and Bessi, Irene and Lenz, Ann-Kathrin and Schmiedel, Alexander and Holzapfel, Marco and Lambert, Christoph and Pena, Vladimir and H{\"o}bartner, Claudia},
  title     = {Large Stokes shift fluorescence activation in an RNA aptamer by intermolecular proton transfer to guanine},
  series = {Nature Communications},
  volume    = {12},
  journal   = {Nature Communications},
  doi       = {10.1038/s41467-021-23932-0},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-270274},
  year      = {2021},
  abstract  = {Fluorogenic RNA aptamers are synthetic functional RNAs that specifically bind and activate conditional fluorophores. The Chili RNA aptamer mimics large Stokes shift fluorescent proteins and exhibits high affinity for 3,5-dimethoxy-4-hydroxybenzylidene imidazolone (DMHBI) derivatives to elicit green or red fluorescence emission. Here, we elucidate the structural and mechanistic basis of fluorescence activation by crystallography and time-resolved optical spectroscopy. Two co-crystal structures of the Chili RNA with positively charged DMHBO+ and DMHBI+ ligands revealed a G-quadruplex and a trans-sugar-sugar edge G:G base pair that immobilize the ligand by π-π stacking. A Watson-Crick G:C base pair in the fluorophore binding site establishes a short hydrogen bond between the N7 of guanine and the phenolic OH of the ligand. Ultrafast excited state proton transfer (ESPT) from the neutral chromophore to the RNA was found with a time constant of 130 fs and revealed the mode of action of the large Stokes shift fluorogenic RNA aptamer.},
  language  = {en}
}
@article{MieczkowskiSteinmetzgerBessietal.2021,
  author    = {Mieczkowski, Mateusz and Steinmetzger, Christian and Bessi, Irene and Lenz, Ann-Kathrin and Schmiedel, Alexander and Holzapfel, Marco and Lambert, Christoph and Pena, Vladimir and H{\"o}bartner, Claudia},
  title     = {Large Stokes shift fluorescence activation in an RNA aptamer by intermolecular proton transfer to guanine},
  series = {Nature Communications},
  volume    = {12},
  journal   = {Nature Communications},
  doi       = {10.1038/s41467-021-23932-0},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-254527},
  pages     = {3549},
  year      = {2021},
  abstract  = {Fluorogenic RNA aptamers are synthetic functional RNAs that specifically bind and activate conditional fluorophores. The Chili RNA aptamer mimics large Stokes shift fluorescent proteins and exhibits high affinity for 3,5-dimethoxy-4-hydroxybenzylidene imidazolone (DMHBI) derivatives to elicit green or red fluorescence emission. Here, we elucidate the structural and mechanistic basis of fluorescence activation by crystallography and time-resolved optical spectroscopy. Two co-crystal structures of the Chili RNA with positively charged DMHBO+ and DMHBI+ ligands revealed a G-quadruplex and a trans-sugar-sugar edge G:G base pair that immobilize the ligand by π-π stacking. A Watson-Crick G:C base pair in the fluorophore binding site establishes a short hydrogen bond between the N7 of guanine and the phenolic OH of the ligand. Ultrafast excited state proton transfer (ESPT) from the neutral chromophore to the RNA was found with a time constant of 130 fs and revealed the mode of action of the large Stokes shift fluorogenic RNA aptamer.},
  language  = {en}
}
@phdthesis{Mims2023,
  author    = {Mims, David},
  title     = {Einblicke in die Spinchemie durch Untersuchung des Magnetfeldeffektes in rigide gebundenen Radikalionenpaaren},
  doi       = {10.25972/OPUS-30354},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-303547},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2023},
  abstract  = {Synthese starrer Donor-Akzeptor-Verbindungen und Untersuchung des Magnetfeldeffektes auf Lebenszeit resultierender Biradikale mittels optischer Spektroskopie.},
  subject      = {Magnetfeldeffekt},
  language  = {de}
}
@phdthesis{Mladenovic2008,
  author    = {Mladenovic, Milena},
  title     = {Theoretical Investigation into the Inhibition of Cystein Proteases},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-25763},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2008},
  abstract  = {Although known about and investigated since the late 1970's, the picture of the basic principles governing inhibitor strengths and the structure-activity relationships of the cysteine protease inhibition mechanism is still very incomplete. Computational approaches can be a very useful tool for investigating such questions, as they allow the inspection of single, specific effects in isolation from all others, in a manner very difficult to achieve experimentally. The ab initio treatments of such large systems like proteins are still not feasible. However, there is a vast number of computational approaches capable of dealing with protein structures with reasonable accuracy. This work presents a summary of theoretical investigations into cysteine protease cathepsin B using a range of methods. We have concentrated on the investigation of cysteine protease inhibition by epoxide- and aziridine-based inhibitors in order to obtain better insight into these important topics. Various model systems are simulated by means of pure quantum mechanical methods and by hybrid (QM/MM) methods. Both approaches provide a static picture. Dynamical effects are then accounted for by additional molecular dynamics (MD) simulations, using both classical and QM/MM MD approaches. The quantum mechanical approach was used to study very small model systems consisting only of the electrophilic warhead of the inhibitor (both substitituted and not) and molecular moieties simulating a very simplified protein active site (methylthiolate instead of Cys29 and methylimidazolium instead of His199 residue) and solvent surroundings (two waters or two ammonium ions, in combination with a continuum solvent model). Although simple, such a system provides a good description of the most important interactions involved in the inhibition reaction. It also allows investigation of the influence of the properties of the electrophilic warhead on the reaction rate. Beside the properties of the electrophilic warhead, the protein and solvent environment is also an important factor in the irreversible deactivation of the enzyme active site by the inhibitor. The non-covalent interactions of the inhibitor with the oxyanion hole and other subsites of the enzyme, as well as its interaction with the solvent molecules, need to be explicitly taken into account in the calculations, because of their possible impact on the reaction profile. As molecular modeling methods allow the treatment of such large systems, but lack the possibility of describing covalent interactions, our method of choice was the combined quantum mechanics/molecular modeling approach. By splitting the system into a smaller part that undergoes the bond cleavage/formation process and must be treated quantum mechanically, and a larger part, comprised of the rest of the protein, which could be treated using force fields, we managed to simulate the system at the desired precision. Our investigations concentrated on the role of His199 in the inhibition mechanism as well as on the structure-reactivity relationships between cysteine protease and various inhibitors, yielding new insight into the kinetics, regio- and stereospecificity of the inhibition. In particular, our calculations provide the following insights: i.) an explanation for the regioselectivity of the reaction, and original insight into which interactions affect the stereoselectivity; ii.) a clear model which explains the known structure-activity relationships and connects these effects with the pH-dependency of the inhibition; iii.) our computations question the generally accepted two-step model by showing that substituent effects accelerate the irreversible step to such an extent that the achievement of an equilibrium in the first step is doubtful; iv.) by way of theoretical characterizations of aziridine models, the reasons for similarities and differences in the mode of action of epoxide- and aziridine-based inhibitors are elucidated; and finally, v.) combining our results with experimental knowledge will allow rational design of new inhibitors. To account for dynamical effects as well, molecular dynamics (MD) computations were also performed. In these calculations the potential energy was computed at the force field level. The results not only supported and clarified the QM/MM results, but comparison with previous X-ray structures helped correct existing errors in the available geometrical models and resolved inconsistencies in the weighting of various factors governing the inhibition. In the work the first QM/MM MD calculations on the active site of the cysteine proteases are presented. In contrast to the MD simulations, these calculations used potential energies computed at the QM/MM-level. With the help of these computations we sought to address strongly disputed questions about the reasons for the existence of the active site ion pair and its role in the high activity of the enzyme.},
  subject      = {Quantenchemie},
  language  = {en}
}