@phdthesis{Pawellek2021,
  author    = {Pawellek, Ruben},
  title     = {Charged Aerosol Detector Performance Evaluation and Development of Optimization Strategies for the Analysis of Amino Acids},
  doi       = {10.25972/OPUS-24319},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-243197},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2021},
  abstract  = {The charged aerosol detector (CAD) is an aerosol-based detector employed in liquid chromatography which has become established in the field of pharmaceutical analysis due to its outstanding performance characteristics, e.g. the almost uniform response for nonvolatile analytes. Owing to its principle of detection, the response of the CAD depends on the volatility of a compound and is inherently nonlinear. However, the newly implemented instrumental settings evaporation temperature and power function value (PFV) are valuable tools to overcome some of these drawbacks and can even enhance the detector's capabilities when adjusted properly. This thesis aimed to evaluate the impact of the new instrumental settings on the CAD performance. Additionally, the influence of modern separation techniques for small polar compounds on the CAD was assessed and the applicability of hyphenated UV-CAD techniques explored. The optimization strategies derived from the evaluation procedures and the conjunction of the instrumental and chromatographic techniques investigated were utilized for the challenging impurity profiling of amino acids and amino acid-like drugs. The results of the method validation procedures confirmed the broad applicability of the CAD in the pharmaceutical analysis of nonvolatile compounds, supported by satisfactory sensitivity and reproducibility for meeting the regulatory requirements with respect to the ICH guidelines Q2(R1) and Q3A(R2). The limits of applicability include the analysis of semivolatile compounds, and the method transfer between current and legacy CAD models. Further advances in the definition and standardization of allowed ranges for the instrumental settings and the establishment of general optimization procedures in the method development could lead to a more widespread use of the detection technique in compendial methods.},
  subject      = {Instrumentelle Analytik},
  language  = {en}
}
@phdthesis{Unger2020,
  author    = {Unger, Nina},
  title     = {Stability of Tryptophan in Parenteral Amino Acid Solutions: Identification of Degradation Products and Development of HPLC Analysis Methods},
  doi       = {10.25972/OPUS-19982},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-199825},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2020},
  abstract  = {The stability of Trp in pure solutions and in parenteral AA formulations was evaluated with regard to typically used manufacturing processes, storage conditions and primary packaging. Therefore, thorough stability studies on Trp solutions were conducted beforehand. The applied stressing method, i.e. steam sterilization by autoclave, are chemically seen relatively mild but showed to be efficient to induce Trp degradation in the presence of oxygen. Subsequent identification, separation and characterization were challenging due to similar substance properties, numerous stereoisomers and pairs of diastereomers found amongst them. However, the identified o-aminoacetophenone compounds, Kyn and NFK, are associated with photo reactivity and have photo-oxidizing properties. Thus, best possible protection from UV-light, together with strict oxygen expulsion, are the most important criteria to impede Trp degradation after autoclaving. The identification of Trp degradation products was assisted by the compilation of a substance library, which included manifold reported and chemically plausible Trp degradation substances. The substances were classified for priority and their early or late-stage occurrence. The large number of possible substances and stereoisomers was narrowed down with the information retrieved from LC-UV/MS experiments. However, final identification was achieved by the synthesis of proposed substances as references. The following eight substances were characterized as Trp degradation substances: Kyn, NFK and three pairs of diastereomers R,R/R,S DiOia, R,R/R,S Oia and cis/trans PIC. Fig. 33 shows the proposed degradation pathway and demonstrates the close chemical relationship, which may be an explanation for the conversion of some substances into each other during the storage period. The proposed pathway brings together the results of different Trp stability and stressing studies, respectively [89, 94, 97, 98, 103, 133]. To our knowledge, the simultaneous formation of the identified degradation substances has not been reported before and especially not under the stressing conditions applied. The application of a traditional RP-HPLC method was compared to two developed IP-HPLC methods and a RP-HPLC methods using a modified perfluorinated column. Orthogonal analyses methods and especially the combination of UV and MS detection are necessary in order to indicate potentially undetected degradation substances. Main evaluation criteria were the separation performance, analyses time, reproducibility and feasibility. The best results upon assessment of all Trp degradation products, in both; pure Trp solutions and pharmaceutical formulations, were obtained by a traditional RP-HPLC. The optimized method was validated according to ICH guidelines Q2(R1) and meets the criteria of a stability-indicating HPLC-UV method. The validated method has a sufficient separation performance with an adequate selectivity indicating the Trp degradation substances next to each other and next to other AAs in finished pharmaceutical formulations. The detailed knowledge of Trp degradation and the method presented may be transferred practically to the pharmaceutical industry processing Trp-containing products. In general, the findings might contribute to the quality management of such pharmaceutical products during manufacturing and storage. Additionally, the study results provide basic information for the establishment of an impurity consideration following the ICH guidelines Q3B (R2) (impurities in new drug products) for products containing Trp. However, further development of the method applying more sophisticated detectors or more potent HPLC techniques like e.g. UHPLC and the implication of more sensitive (MS) detectors like ToF-MS would be advantageous with regard to economic and practical aspects.},
  subject      = {Stabilit{\"a}t},
  language  = {en}
}
@phdthesis{Kuehnreich2016,
  author    = {K{\"u}hnreich, Raphael},
  title     = {Development and Validation of Methods for Impurity Profiling of Amino Acids},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-145718},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2016},
  abstract  = {The requirements for the impurity profiling of substances for pharmaceutical use have become greater over time. They can be accomplished by the use of modern instrumental analysis techniques, which have been evolved in the last decades. New types of columns with HILIC, mixed-mode and chiral stationary phases are suitable for the separation of all kinds of substances mixtures, that were previously hardly possible with the use of common reversed phase columns. Modern, almost universal detectors like CAD, ELSD and CNLSD can be applied for a sensitive detection of substances without a chromophore. However, in addition to some small individual disadvantages to these methods, the costs are high and applications are still kind of rare. Thus, the introduction of these devices at a broader level has not yet taken place. While this presumably will change over time, there is a need for methods that enable the impurity profiling of challenging substances with widespread analytics devices. Methionine is a substance with hydrophobic and hydrophilic impurities. With the help of a mixed-mode stationary phase, which is a combination of a reversed phase and a strong cationic exchanger, the separation of all putative impurities was found possible with good sensitivity and selectivity. The method requires apart from the column only standard isocratic HPLC equipment and was successfully validated. The evaluation of the enantiomeric purity of amino acids is challenging. Two approaches were made. The first method utilizes CE by means of in-capillary derivation with OPA and the subsequent separation with a cyclodextrin. With the use of OPA/NAC and γ-cyclodextrin, a simple and cost-effective method for the indirect enantioseparation of 16 amino acids was developed. With the second approach, racemic amino acids can be analyzed with HPLC and in-needle derivatization. For this, different columns and chiral thiols were evaluated and the chromatographic parameters were optimized. A method with OPA/NIBLC, a pentafluorophenyl column made the enantioseparation of 17 amino acids feasible. A LOQ of the minor enantiomer down to 0.04 \% can be achieved with UV spectrophotometric detection. A similar method was developed for impurity profiling of L-amino acids. This can be used alternatively for the amino acid analysis performed by the European Pharmacopoeia. A simple, robust, precise and accurate method for the evaluation of impurities in glyceryl trinitrate solution was developed and validated. The four impurities of glyceryl trinitrate are separated by means of an acetonitrile-water gradient and the assay for this substance is also possible.},
  subject      = {Aminos{\"a}uren},
  language  = {en}
}
@phdthesis{Wahl2016,
  author    = {Wahl, Oliver},
  title     = {Impurity Profiling of Challenging Active Pharmaceutical Ingredients without Chromophore},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-137205},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2016},
  abstract  = {The impurity profiling of pharmaceutical ingredients can oppose many challenges. The best part of active pharmaceutical ingredients (APIs) and the related substances are detectable by UV detection, a very common detection principle. However, if an API lacks a suitable chromophore other means of detection are necessary. The corona charged aerosol detector (CAD) is a detector capable of detecting substances independent of their chemical structure. This "universal" detector has only one limitation: The analyte has to have a sufficiently low vapor pressure. Another important challenge that comes often together with the lack of a chromophore concerns the separation. These substances (e.g. most amino acids and derivatives) often contain structures that make them difficult to retain on conventional reversed phase columns. Possible solutions to overcome these challenges, like the application of the CAD and the benefit of so-called mixed-mode stationary phases in impurity profiling for pharmacopoeial purposes were explored in this work. The related substances analyzed in this thesis comprise amino acids, inorganic ions, bisphosphonic acids, basic and acidic derivatives of amino acids (esters and amides). The successful development and validation of mixed-mode liquid chromatography methods with CAD detection for carbocisteine and ibandronate sodium might help to increase the acceptance of this versatile detector in the pharmaceutical industry and in official authorities dealing with the determination of related substances. The combination of UV and CAD detection proved very useful during the analysis of Bicisate. Most of the related substances and some unidentified impurities were detectable by CAD whereas a synthesis by-product, a semi-volatile ester, was only detectable in the UV trace. The simple combination covers all relevant impurities in a single analysis. Two truly orthogonal methods regarding separation and detection for the enantiomeric purity of magnesium-L-aspartate helped to find the reason for elevated D aspartic acid content in the drug substance. A very quick and sensitive indirect separation using the OPA derivatization with NAC was developed as a powerful screening tool, whereas the direct separation of D- and L-CBQCA-Asp derivatives confirmed the results. Both methods were optimized in order to do without substances mentioned on the REACH list, like sodium tetraborate which is very frequently applied in standard derivatization protocols and CE separations. The importance of orthogonal detection principles in the determination of related substances of amino acids was discussed in a review article dealing with the revision of amino acid monographs in the Ph. Eur..},
  subject      = {Chromatographie},
  language  = {en}
}
@phdthesis{Meyer2015,
  author    = {Meyer, Frank},
  title     = {Soft X-ray Spectroscopic Study of Amino Acid and Salt Solutions},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-124295},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2015},
  abstract  = {This thesis focuses on the investigation of the electronic structure of amino acids and salts in aqueous solution using X-ray spectroscopic methods. Both material groups are of fundamental importance with regards to many physiological reactions, especially for the Hofmeister effect which describes the solubility of proteins in salt solutions. Hence, the investigation of the electronic structure of amino acids and the influence of ions on the hydrogen bonding network of liquid water are important milestones to a deeper understanding of the Hofmeister series. Besides investigating the electronic structure of amino acids in aqueous solution, the spectra were used to develop a building block model of the spectral fingerprints of the functional groups and were compared to spectral signatures of suitable reference molecules. In the framework of this thesis, it is shown that the building block approach is a useful tool with allows the interpretation of spectral signatures of considerably more complex molecules In this work, the focus lies on the investigation of the occupied and unoccupied electronic states of molecules in solid state, as well as in aqueous solution. Hereby, different X-ray spectroscopic methods were applied. X-ray emission spectroscopy (XES) was used to probe the occupied electronic structure of the solution, while the unoccupied electronic structure was addressed by using X-ray absorption spectroscopy (XAS). Finally, resonant inelastic X-ray scattering (RIXS) as a combination of XAS and XES measurements provides the combined information about the unoccupied and occupied molecular levels. The element specific character of the three measurement methods is a feature which allows the investigation of the local electronic structure of a single functional group. With RIXS, also non-equivalent atoms of the same element can be addressed separately. Within this thesis firstly, a library of the XE spectra of all 20 proteinogenic amino acids in zwitterionic form is presented. From this sample-set XES fingerprints of the protonated alpha-amino group NH3+ and the deprotonated carboxylic group COO- were evaluated and used to identify the XES fingerprints of the nitrogen and oxygen containing functional groups of the side chains of the amino acids. The data is discussed based on a building block approach. Furthermore, the XE spectra of the functional groups of lysine and histidine, namely the NH2 group and the C3N2H4 ring structure, are both compared to XE spectra of suitable reference molecules (imidazole, ammonia and methylamine). It is found that the XE and RIXS spectra of the side chains of lysine and histidine show large similarities to the XE spectra of the reference molecules. This agreement in the XE and RIXS spectra allows a qualitative investigation of XE and RIXS spectra of more complex amino acids using the XE and RIXS spectra of suitable reference molecules. The chemical structure of histidine and proline is quite different from the structures of the other proteinogenic amino acids. Due to the unique chemical structure of the side chain which in both cases consists of a heterocyclic ring structure, these two amino acids were investigated in more detail. Zubavichus et al. [1] have shown that amino acids are decomposing while exposed to X-ray radiation of the experiment. The damage is irreversible and molecular fragments can adsorb on the membrane of the experimental setup. This contamination can also create a spectral signature which then overlaps with the signal of the solution and which complicates the interpretation of the data. To record spectra which are free from contributions of adsorbed molecular fragments on the membrane, the adsorption behavior was investigated. In contrast to the solid phase in which the amino acids are present as salts in one electronic conformation, the charge state of the amino acids can be manipulated in aqueous solution by tuning the pH-value. By doing this, all possible charge states are accessible (cation, anion, zwitterion). In this work it is shown that also the spectra of the different charge states can be modeled by the spectra of suitable reference molecules using the building block approach. The spectral changes occurring upon protonation and deprotonation of the functional groups are explored and verified by comparing them to theoretical calculations. The comparison with measurements of pyrrolidine show that the electronic structure which surrounds the nitrogen atom of proline is strongly influenced by the ring structure of the side chain. Furthermore, the proline, pyrrolidine, and histidine molecules are also degrading during the liquid sample measurements. This can be observed by the detection of a new spectral component which increases with the measurement time originating from the window membrane. In all cases, the speed of the agglomeration of molecular fragments at the membrane was observed to be highly sensitive to the pH value of the solution. To understand the Hofmeister series, also the impact of the salt ions have to be investigated. In this study the influence of potassium chloride (KCl) on the hydrogen bond network of water was studied by using non-resonantly excited XES as well as RIXS. A decreased dissociation of hydrogen molecules and changes in the molecular vibrations could be detected. These changes were interpreted with a molecular reorganization of the water molecules and a decreased number of hydrogen bonds.},
  subject      = {Aminos{\"a}uren},
  language  = {en}
}
@incollection{ShephardMeierLutz1991,
  author    = {Shephard, S. E. and Meier, I. and Lutz, Werner K.},
  title     = {Alkylating potency of nitrosated amino acids and peptides},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-86320},
  publisher      = {Universit{\"a}t W{\"u}rzburg},
  year      = {1991},
  abstract  = {Tbe alkylating potency of unstable N-nitrosamino acids and N-nitrosopeptides was investigated in vitro using 4-(para-nitrobenzyl)pyridine (NBP) as nucleophile. Of the amino acids, Met and those with an aromatic side chain were the most potent. The relative overall alkylating potency was 23:10:5:4:2:1: for Trp, Met, His, 1)rr, Phe and Gly, respectively. The homo-dipeptides were much more potent than the amino acids, with relative potencies of 400:110:100:8:3:1, for Trp-Trp, l)T-'I)T, Met-Met, Asp-Asp, Phe-Phe and Gly, respectively. In the one-phase reaction system (in which NBP is already present durlog the nitrosation reaction at acidic pH), all amino acids tested showed a second-order reaction for nitrite. In the two-phase system (in which NBP is added only after bringing the nitrosation reaction mixture to neutrality), all amino acids tested except one again showed a second-order reaction for nitrite (Phe, His, Asp and the dipeptide artiticial sweetener aspartame); only Met under these conditions bad a reaction order of one for nitrite. This could mean that nitrosation of the side chain of Metproduces a second N-nitroso product which is relatively stable in acid but reacts with NBP under neutral conditions. In the human stomach, this side-chain nitrosation might become more important than the reactions at the primary amino group, firstly because of the greater stability of the product(s) in acid and secondly because of the tirst-order reaction rate for nitrite. A decrease in nitrite concentration from the millimolar concentrations ofthe in-vitro assay to the micromolar concentrations in the stomach reduces the reaction rate by a factor of 1000 for the side-chain nitrosation, whereas a million-fold reduction will be observed for nitrosation of the amino group.},
  subject      = {Aminos{\"a}uren},
  language  = {en}
}
@phdthesis{Almeling2011,
  author    = {Almeling, Stefan},
  title     = {The use of aerosol-based detection systems in the quality control of drug substances},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-64722},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2011},
  abstract  = {The work presented in this thesis was mainly targeted at exploring the capabilities of evaporation based LC detectors as well as further alternatives for the control of impurities in substances not exhibiting a suitable chromophore for UV-detection. In the course of the work carried out, several new methods for the identification, impurities control and composition testing of APIs were elaborated. An evaporation based detector that entered into the field of pharmaceutical analysis in the recent years was the Evaporative Light Scattering Detector (ELSD). However, non-reproducible spikes were reported when injecting concentrated test solutions as they are usually required for the control of impurities. The reasons, for the appearance of these spikes as well as possibilities for their avoidance were explored in a systematic study. Moreover, the dependence of the detector sensitivity on different eluent composition, eluent flow-rate and ELSD settings was investigated. In the course of the revision of the Ph.Eur. monographs for aspartic acid and alanine, a C18 reversed phase ion-pair LC method using 1 mmol/L of perfluoroheptanoic acid as an ion-pair reagent and a charged aerosol detector (CAD) was developed and fully validated for the purity control of Asp. The method was capable of separating the organic acids and major amino acids known to occur as process related impurities. With a slight modification, the method was also applicable for the purity control of Ala. Based on the developed LC-CAD method for the impurity control of alanine, a comparative study of the performance characteristics of different evaporation based LC detectors, i.e. ELSD, CAD and the recently developed Nano Quantity Analyte Detector (NQAD) was carried out. Additionally, an MS detector and qNMR were included in this study. It was found that the control of impurities in Alanine at an ICH conform level could be ensured using LC coupled to CAD, MSD and NQAD detection as well as by the use of qNMR. In terms of performance, prize and ease of use CAD and NQAD were found to be the most suitable alternatives. In terms of repeatability and sensitivity, the CAD appeared slightly superior to the NQAD. The quality of streptomycin sulfate is not sufficiently controlled by the current Ph.Eur. monograph in that an appropriate test for the control of the related substances is missing. A study was carried out to develop a C18 reversed phase ion-pair LC method using pentafluoropropionic acid as an ion-pair reagent and a CAD for the identification and control of the related substances. The developed method allowed the separation of 21 impurities from streptomycin. Moreover, coupling of the method to MS allowed the identification of the separated impurities. The method was shown to be sufficiently sensitive to control the related substances with a disregard limit of 0.1\% as it is normally applied in the Ph.Eur. for products derived from fermentation. Currently, the aescin content of horse-chestnut standardized dry extract is determined using a complex and laborious photometric determination. A more selective LC-UV assay determination for beta-aescin has been proposed for the Ph.Eur. draft monograph of horse-chestnut standardized dry extract. Possibilities were explored to further improve the LC-method using detection by CAD. It was demonstrated that by the use of a modified LC-CAD method several problems related to the differences in the UV-response of the various components contained in the active aescin fraction could be eliminated. Moreover the proposed reference standard strategy was reviewed. Eventually, it was demonstrated on the example of two different clusters of pharmacologically active peptides how low energy collision induced dissociation mass spectrometry (low energy CID-MS) can successfully be used for identification testing in pharmacopoeial monographs. In this respect, the combination of a direct confirmation of the molecular mass via the m/z-ratio of the molecule ions with structural sequence information obtained by low energy CID-MS experiments was found to deliver a higher degree of certainty of the identity of a given substance than the set of tests currently described in the monographs. A significant gain in efficiency and throughput and important reduction of the amount of sample consumed during testing were identified as being additional advantages of this approach. Taken together, it could be demonstrated on various examples how recent technological advancements in the field of analytical chemistry can contribute to improve the quality control of APIs.},
  subject      = {Elektronensprayionisations-Massenspektrometrie},
  language  = {en}
}
@article{SebaldMachleidtWachter1980,
  author    = {Sebald, Walter and Machleidt, Werner and Wachter, Elmar},
  title     = {N,N'-dicyclohexylcarbodiimide binds specifically to a single glutamyl residue of the proteolipid subunit of the mitochondrial adenosinetriphosphatases from Neurospora crassa and Saccharomyces cerevisiae},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-47394},
  year      = {1980},
  abstract  = {T~e N,N'-dicrclohexylcarbodiimide-binding proteolipid subumt of the mitochondrial adenosinetriphosphatases (ATP phosphohydrolase, EC 3.6.1.3) of Neurosporacrassa and Saccharomyces cerevisiae were purified from mitochondria incubated with the radioactively labeled inhibitor. The specifically labeled subunit was cleaved with cyanogen bromide and N-bromosuccinimide, and the resultant fragments were separated by gel chromatography in the presence of 80\% (vol/vol) formic acid. The N,N'-dicyclohexylcarbodiimide label was recovered in each organism exclusively in a 17-residue fragment. Further analysis by automated solid-phase Edman degrada.ti.on revealed tha~ the bound label was present at only one positIOn, correspondmg to a glutamyl residue. The NN'~ icyc~ohexyl~a~bodiiJ?1~de-'!l0dified glutamyl residue is the ~nly Id~ntIcal aCidic posItIon m both proteins and occurs in the middle of a hydrophobic sequence of about 25 residues.},
  subject      = {Dicyclohexylcarbodiimid},
  language  = {en}
}
@phdthesis{Cota2010,
  author    = {Cota, Smaranda},
  title     = {Contributions to the Chemistry of Higher-Coordinate Silicon: Synthesis, Structure, and Stereodynamics of New Penta- and Hexacoordinate Silicon(IV) Complexes},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-52312},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2010},
  abstract  = {Im Vordergrund dieser Arbeit stand die Synthese und strukturelle Charakterisierung penta- und hexakoordinierter Silicium(IV)-Komplexe. Im Verlauf dieser Untersuchungen wurden die neutralen pentakoordinierten Silicium(IV)-Komplexe 38, 39, 43-48, 54 und 55 dargestellt. Weiterhin konnten die neutralen hexakoordinierten Silicium(IV)-Komplexe 33-36,49, 50, 52, 53, 56-62, 63, 64 und 65 synthetisiert werden. Die Charakterisierung aller Verbindungen erfolgte durch Elementaranalyse, NMR-Spektroskopie in L{\"o}sung (1H, 13C, 15N, 29Si) und im Festk{\"o}rper (13C, 15N, 29Si VACP/MAS NMR), sowie durch Kristallstrukturanalyse(außer 45, 47-49, 52, 53 und 63).},
  subject      = {Silicium},
  language  = {en}
}
@phdthesis{Blum2009,
  author    = {Blum, Monika},
  title     = {Electronic and Chemical Properties of Liquids and Solutions},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-43732},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2009},
  abstract  = {Die hier vorgelegte Doktorarbeit wurde der Untersuchung der elektronischen und chemischen Eigenschaften von Fl{\"u}ssigkeiten und L{\"o}sungen mittels weicher R{\"o}ntgenstrahlen gewidmet. Die verwendeten Photonen-rein-Photonen-raus Methoden, namentlich R{\"o}ntgenabsorptionsspektroskopie (XAS), R{\"o}ntgenemissionsspektroskopie (XES) und resonante inelatische R{\"o}ntgenstreuung (RIXS) stellten sich als exzellente Methoden heraus, diese Systeme zu untersuchen. Im Rahmen dieser Arbeit wurde eine experimentelle Anlage gebaut, welche notwendig ist um die genannten Messmethoden zur Untersuchung von Fl{\"u}ssigkeiten zu nutzen. Zentraler Teil dieser Anlage ist eine neuartige Durchflussnasszelle, die die Handhabung der Messungen im Vergleich zu {\"a}lteren Nasszellen vereinfacht. Dabei ist sie variabel genug, um sie zur Messung von Gasen oder Fl{\"u}ssig-Fest-Grenzfl{\"a}chen anzupassen. Mit der Zelle ist es m{\"o}glich, die zu untersuchenden Fl{\"u}ssigkeiten unter gut kontrollierten Bedingungen (Temperatur und Durchfluss) zu untersuchen. Die Durch-flussnasszelle ist Teil einer neuen Synchrotronendstation (SALSA). F{\"u}r die Messungen stehen dabei ein Elektronenanalysator und ein neuartiges hochaufl{\"o}sendes, hocheffizientes Weichr{\"o}ntgenspektrometer zur Verf{\"u}gung. Mit diesem Spektrometer ist es m{\"o}glich, zweidimensionale RIXS Karten in sehr kurzer Zeit (wenige Minuten) aufzunehmen, welche die vollst{\"a}ndige Information von R{\"o}ntgenabsorption und R{\"o}ntgenemission beinhalten. Mit Hilfe der neu entwickelten Instrumentierung war es m{\"o}glich, eine Reihe unterschiedlicher Fl{\"u}ssigkeiten und L{\"o}sungen zu untersuchen. Als erstes System wur-den w{\"a}ssrige NaOH bzw. NaOD L{\"o}sungen erforscht. Die nicht-resonanten Emissionsspektren sind stark von dem genutzten L{\"o}sungsmittel dominiert und haben daher {\"A}hnlichkeit mit den Spektren von Wasser und schwerem Wasser. Es war m{\"o}glich, eine Abh{\"a}ngigkeit der Spektren von der Ionenkonzentration festzustellen. Trotz der {\"A}hnlichkeit der Spektren zu Wasserspektren war es aufgrund eines OH- / OD- spezifischen Charakteristikums an der Absorptionskante m{\"o}glich, resonante Spektren von OH-/OD- ohne Beitrag des Spektrums von Wasser zu erhalten. Diese Spektren zeigten Anzei-chen f{\"u}r Protonendynamik auf der Zeitskala der Rumpflochlebensdauer. F{\"u}r die Emissionsspektren von NaOH im festen Zustand konnten an der hochenergetischen Hauptline eine niederenergetische und hochenergetische Schulter festgestellt werden. Diese Schultern sind das Ergebnis des Eigendissoziationsprozesses von OH- Ionen, bei welchem O2- Ionen und H2O gebildet werden. Weiterhin waren die Untersuchungen an Natronlauge von Interesse f{\"u}r die folgenden Aminos{\"a}urenmessungen, da Natronlauge genutzt wurde, um die gew{\"u}nschten pH-Wert {\"A}nderungen zu erreichen. Die zweite Gruppe von Fl{\"u}ssigkeiten, die in dieser Arbeit untersucht wurde, sind Aminos{\"a}uren. Aminos{\"a}uren sind die Bausteine f{\"u}r Peptide und Proteine und da-mit sehr wichtig f{\"u}r alle Biowissenschaften. Als Vertreter der Aminos{\"a}uren wurden Glycin - die kleinste Aminos{\"a}ure, und Lysin - eine Aminos{\"a}ure mit zwei Amingruppen - untersucht. Beide Aminos{\"a}uren reagieren sensibel auf {\"A}nderungen des pH-Wertes mit einer Deprotonierung/Protonierung der Amingruppe (NH2 \&\#8596; NH3+). In den experimentellen Spektren konnte ein deutlicher Einfluss dieser Prozesse gefunden werden. Die gemessenen Spektren der protonierten Aminos{\"a}uren zeigen deutliche An-zeichen f{\"u}r Dissoziationsprozesse. Erste DFT Rechnungen best{\"a}tigten diese Anzeichen und unterst{\"u}tzen das Dissoziationsmodell der Aminos{\"a}uren. Qualitativ l{\"a}sst sich sagen, dass sich die hochenergetische Linie in den N K XES Spektren auf die unprotonierten Amingruppen bezieht und der niederenergetische Bereich im Spektrum den protonierten Gruppen zugeordnet werden kann. Neben Aminos{\"a}uren sind auch Alkohole und organische S{\"a}uren von Bedeutung f{\"u}r biologische Prozesse. Daher wurden als Vertreter aus diesen Gruppen der einfachste Alkohol (Methanol) und die einfachste S{\"a}ure (Essigs{\"a}ure) untersucht. Die O K und C K XES Spektren von fl{\"u}ssigem Methanol stimmen hervorragend mit Gasphasen DFT Rechnungen {\"u}berein. Dies l{\"a}sst den Schluss zu, dass der Einfluss der Umgebung (Wasserstoffbr{\"u}ckenbindungen) auf die Spektren gering ist. Durch resonante Anregung in geeignete unbesetzte Orbitale war es m{\"o}glich, die zwei unterschiedlichen Sauerstoffatome der Essigs{\"a}ure zu unterscheiden und auch einen Anhaltspunkt f{\"u}r die Carboxylgruppen-spezifischen C K XES Spektren zu bekommen. An der Kohlenstoffkante zeigten die XAS Spektren große Unterschiede zu Gasphasenmessungen, was ein Hinweis auf den Einfluss der Wasserstoffbr{\"u}ckenbindungen ist. Die Untersuchung der elektronischen und chemischen Eigenschaften von Fl{\"u}ssigkeiten und L{\"o}sungen ist immer noch ein sehr junges Forschungsgebiet. Die Ergebnisse dieser Doktorarbeit zeigen, welch interessantes Forschungsgebiet dies ist. Die vorgestellten Ergebnisse k{\"o}nnen als die grundlegende Basis f{\"u}r alle weiteren Untersuchungen in diesem Forschungsfeld angesehen werden.},
  subject      = {R{\"o}ntgenspektroskopie},
  language  = {en}
}
@phdthesis{Wich2009,
  author    = {Wich, Peter Richard},
  title     = {Multifunctional Oligopeptides as an Artificial Toolkit for Molecular Recognition Events},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-38108},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2009},
  abstract  = {The main focus of this thesis was the synthesis and analysis of multifunctional oligopeptides. The study of their non-covalent interactions with various counterparts revealed interesting new results, leading to both methodological and application related progress. The first project of this thesis concentrated on the in-depth analysis of the peptide receptor CBS-Lys-Lys-Phe-NH2 to acquire a better understanding of its binding mode upon complexation with a substrate. In this context it was possible to develop—in cooperation with the group of Prof. Sebastian Schl{\"u}cker—a direct and label free spectroscopic detection of immobilized compounds which are often found in combinatorial libraries. This new screening method utilizes the advantages of the surface enhanced Raman spectroscopy and allowed for the first time a surface mapping of a single polystyrene bead for the identification of peptides in femtomolar concentrations. Hence, this method allows a very fast and sensitive detection of resin bound compounds. The development of this promising new approach set the starting point for future experiments to enable on-bead library screenings and to investigate the complex formation of immobilized compounds. After the comprehensive analysis of the basic structural features of small peptide receptors in the first part of this thesis, the second big block focused on its in vitro evaluation using biological relevant targets. Therefore, several different modifications of the initial peptide structures were synthesized. These modifications provided a molecular toolkit for the tailor made synthesis of structures individually designed for the respective target. The first tests addressed the interaction with Alzheimer's related amyloid fibrils. During these experiments, the successful SPPS syntheses of tri- and tetravalent systems were achieved. The comparison of the multivalent form with the corresponding monovalent version was then under special investigations. These concentrated mainly on the interaction with various bacteria strains, as well as with different parasites. To localize the compounds within the organisms, the synthesis of fluorescence labelled versions was achieved. In addition, several compounds were tested by the Institute for Molecular Infection Biology of the University of W{\"u}rzburg for their antibacterial activity. This thorough evaluation of the biological activity generated precious information about the influence of small structural changes in the peptide receptors. Especially the distinct influence of the multivalency effect and the acquired synthetic skills led to the development of an advanced non-covalent recognition event, as described in the final project of this thesis. The last part of this thesis discussed the development of a novel inhibitor for the serine protease beta-tryptase based on a tailor-made surface recognition event. It was possible to study and analyze the complex interaction with the unique structure of tryptase, that features a tetrameric frame and four catalytic cleavage sites buried deep inside of the hollow structure. However, the point of attack were not the four binding pockets, as mostly described in the literature, but rather the acidic areas around the cleavage sites and at the two circular openings. These should attract peptides with basic residues, which then can block the accessibility to the active sites. A combinatorial library of 216 tetravalent peptide compounds was synthesized to find the best structural composition for the non-covalent inhibition of beta-tryptase. For the screening of the library a new on-bead assay was applied. With this method a simultaneous readout of the total inhibition of all library members was possible, thus allowing a fast and direct investigation of the still resin bound inhibitors. Several additional experiments in solution unveiled the kinetics of the inhibition process. In conclusion, both mono- and multivalent inhibitors interact in a non-destructive and reversible way with the tryptase.},
  subject      = {Peptidsynthese},
  language  = {en}
}
@phdthesis{Shatskaya2006,
  author    = {Shatskaya, Natalia},
  title     = {Identification of amino acids within the substrate binding region of organic cation transporters (OCTZs) that are involved in binding of corticosterone},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-20430},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2006},
  abstract  = {The polyspecific organic cation transporters (OCT) are involved in the elimination and distribution of drugs, environmental toxins, and endogenous organic cations including monoamine neurotransmitters. Steroid hormones inhibit organic cation transport by the three OCT subtypes with different affinities showing distinct species difference; for example, the IC50 values for corticosterone inhibition of cation uptake by transporters rOCT1 and rOCT2 are ~150\&\#956;M and ~4 \&\#956;M, respectively. By introducing domains and amino acids from rOCT2 into rOCT1, we identified three amino acids in the presumed 10th TMD of rOCT2 which are responsible for the higher affinity of corticosterone in comparison to rOCT1. This is the first study which revealed the components of the binding site for corticosterone in OCTs. The evidence is presented that these amino acids (alanine 443, leucine 447, and glutamine 448 in rOCT1 and isoleucine 443, tyrosine 447, and glutamate 448 in rOCT2) are probably located within the substrate binding region of OCTs since the affinity of transported cations was increased together with the affinity of corticosterone. In the double mutant rOCT1(L447Y/Q448E) the IC50 value for the inhibition of [3H]MPP (0.1 \&\#956;M) uptake by corticosterone (24 ± 4 \&\#956;M) was significantly higher compared to the IC50 value for inhibition of [14C]TEA (10 \&\#956;M) uptake (5.3 ± 1.7 \&\#956;M), indicating an allosteric interaction between transported substrate and corticosterone. The data suggest that more than one compound can bind simultaneously to the substrate binding region. These results confirm previous suggestion that binding of substrates and inhibitors to OCTs involves interaction with a comparatively large surface that may include multiple binding domains rather than with a structurally restricted single binding site.},
  subject      = {Kation},
  language  = {en}
}