@unpublished{LindnerSultangaleevaRoehretal.2019, author = {Lindner, Joachim O. and Sultangaleeva, Karina and R{\"o}hr, Merle I. S. and Mitric, Roland}, title = {metaFALCON: A program package for automatic sampling of conical intersection seams using multistate metadynamics}, series = {Journal of Chemical Theory and Computation}, journal = {Journal of Chemical Theory and Computation}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-199258}, year = {2019}, abstract = {The multistate metadynamics for automatic exploration of conical intersection seams and systematic location of minimum energy crossing points in molecular systems and its implementation into the software package metaFALCON is presented. Based on a locally modified energy gap between two Born-Oppenheimer electronic states as a collective variable, multistate metadynamics trajectories are driven toward an intersection point starting from an arbitrary ground state geometry and are subsequently forced to explore the conical intersection seam landscape. For this purpose, an additional collective variable capable of distinguishing structures within the seam needs to be defined and an additional bias is introduced into the off-diagonal elements of an extended (multistate) electronic Hamiltonian. We demonstrate the performance of the algorithm on the examples of the 1,3-butadiene, benzene, and 9H-adenine molecules, where multiple minimum energy crossing points could be systematically located using the Wiener number or Cremer-Pople parameters as collective variables. Finally, with the example of 9H-adenine, we show that the multistate metadynamics potential can be used to obtain a global picture of a conical intersection seam. Our method can be straightforwardly connected with any ab initio or semiempirical electronic structure theory that provides energies and gradients of the respective electronic states and can serve for systematic elucidation of the role of conical intersections in the photophysics and photochemistry of complex molecular systems, thus complementing nonadiabatic dynamics simulations.}, language = {en} } @article{KotsevaDeBackerDeBacqueretal.2019, author = {Kotseva, Kornelia and De Backer, Guy and De Bacquer, Dirk and Ryd{\´e}n, Lars and Hoes, Arno and Grobbee, Diederick and Maggioni, Aldo and Marques-Vidal, Pedro and Jennings, Catriona and Abreu, Ana and Aguiar, Carlos and Badariene, Jolita and Bruthans, Jan and Castro Conde, Almudena and Cifkova, Renata and Crowley, Jim and Davletov, Kairat and Deckers, Jaap and De Smedt, Delphine and De Sutter, Johan and Dilic, Mirza and Dolzhenko, Marina and Dzerve, Vilnis and Erglis, Andrejs and Fras, Zlatko and Gaita, Dan and Gotcheva, Nina and Heuschmann, Peter and Hasan-Ali, Hosam and Jankowski, Piotr and Lalic, Nebojsa and Lehto, Seppo and Lovic, Dragan and Mancas, Silvia and Mellbin, Linda and Milicic, Davor and Mirrakhimov, Erkin and Oganov, Rafael and Pogosova, Nana and Reiner, Zeljko and St{\"o}erk, Stefan and Tokg{\"o}zoğlu, L{\^a}le and Tsioufis, Costas and Vulic, Dusko and Wood, David}, title = {Lifestyle and impact on cardiovascular risk factor control in coronary patients across 27 countries: Results from the European Society of Cardiology ESC-EORP EUROASPIRE V registry}, series = {European Journal of Preventive Cardiology}, volume = {26}, journal = {European Journal of Preventive Cardiology}, number = {8}, organization = {EUROASPIRE Investigators}, issn = {2047-4873}, doi = {10.1177/2047487318825350}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-205526}, pages = {824-835}, year = {2019}, abstract = {Aims The aim of this study was to determine whether the Joint European Societies guidelines on secondary cardiovascular prevention are followed in everyday practice. Design A cross-sectional ESC-EORP survey (EUROASPIRE V) at 131 centres in 81 regions in 27 countries. Methods Patients (<80 years old) with verified coronary artery events or interventions were interviewed and examined ≥6 months later. Results A total of 8261 patients (females 26\%) were interviewed. Nineteen per cent smoked and 55\% of them were persistent smokers, 38\% were obese (body mass index ≥30 kg/m2), 59\% were centrally obese (waist circumference: men ≥102 cm; women ≥88 cm) while 66\% were physically active <30 min 5 times/week. Forty-two per cent had a blood pressure ≥140/90 mmHg (≥140/85 if diabetic), 71\% had low-density lipoprotein cholesterol ≥1.8 mmol/L (≥70 mg/dL) and 29\% reported having diabetes. Cardioprotective medication was: anti-platelets 93\%, beta-blockers 81\%, angiotensin-converting enzyme inhibitors/angiotensin receptor blockers 75\% and statins 80\%. Conclusion A large majority of coronary patients have unhealthy lifestyles in terms of smoking, diet and sedentary behaviour, which adversely impacts major cardiovascular risk factors. A majority did not achieve their blood pressure, low-density lipoprotein cholesterol and glucose targets. Cardiovascular prevention requires modern preventive cardiology programmes delivered by interdisciplinary teams of healthcare professionals addressing all aspects of lifestyle and risk factor management, in order to reduce the risk of recurrent cardiovascular events.}, language = {en} } @article{FigueiredoKraussSteffanDewenteretal.2019, author = {Figueiredo, Ludmilla and Krauss, Jochen and Steffan-Dewenter, Ingolf and Cabral, Juliano Sarmento}, title = {Understanding extinction debts: spatio-temporal scales, mechanisms and a roadmap for future research}, series = {Ecography}, volume = {42}, journal = {Ecography}, number = {12}, doi = {10.1111/ecog.04740}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-204859}, pages = {1973-1990}, year = {2019}, abstract = {Extinction debt refers to delayed species extinctions expected as a consequence of ecosystem perturbation. Quantifying such extinctions and investigating long-term consequences of perturbations has proven challenging, because perturbations are not isolated and occur across various spatial and temporal scales, from local habitat losses to global warming. Additionally, the relative importance of eco-evolutionary processes varies across scales, because levels of ecological organization, i.e. individuals, (meta)populations and (meta)communities, respond hierarchically to perturbations. To summarize our current knowledge of the scales and mechanisms influencing extinction debts, we reviewed recent empirical, theoretical and methodological studies addressing either the spatio-temporal scales of extinction debts or the eco-evolutionary mechanisms delaying extinctions. Extinction debts were detected across a range of ecosystems and taxonomic groups, with estimates ranging from 9 to 90\% of current species richness. The duration over which debts have been sustained varies from 5 to 570 yr, and projections of the total period required to settle a debt can extend to 1000 yr. Reported causes of delayed extinctions are 1) life-history traits that prolong individual survival, and 2) population and metapopulation dynamics that maintain populations under deteriorated conditions. Other potential factors that may extend survival time such as microevolutionary dynamics, or delayed extinctions of interaction partners, have rarely been analyzed. Therefore, we propose a roadmap for future research with three key avenues: 1) the microevolutionary dynamics of extinction processes, 2) the disjunctive loss of interacting species and 3) the impact of multiple regimes of perturbation on the payment of debts. For their ability to integrate processes occurring at different levels of ecological organization, we highlight mechanistic simulation models as tools to address these knowledge gaps and to deepen our understanding of extinction dynamics.}, language = {en} } @article{AtaeeMaghsoudiLatifietal.2019, author = {Ataee, Mohammad Sadegh and Maghsoudi, Yasser and Latifi, Hooman and Fadaie, Farhad}, title = {Improving estimation accuracy of growing stock by multi-frequency SAR and multi-spectral data over Iran's heterogeneously-structured broadleaf Hyrcanian forests}, series = {Forests}, volume = {10}, journal = {Forests}, number = {8}, issn = {1999-4907}, doi = {10.3390/f10080641}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-197212}, year = {2019}, abstract = {Via providing various ecosystem services, the old-growth Hyrcanian forests play a crucial role in the environment and anthropogenic aspects of Iran and beyond. The amount of growing stock volume (GSV) is a forest biophysical parameter with great importance in issues like economy, environmental protection, and adaptation to climate change. Thus, accurate and unbiased estimation of GSV is also crucial to be pursued across the Hyrcanian. Our goal was to investigate the potential of ALOS-2 and Sentinel-1's polarimetric features in combination with Sentinel-2 multi-spectral features for the GSV estimation in a portion of heterogeneously-structured and mountainous Hyrcanian forests. We used five different kernels by the support vector regression (nu-SVR) for the GSV estimation. Because each kernel differently models the parameters, we separately selected features for each kernel by a binary genetic algorithm (GA). We simultaneously optimized R\(^2\) and RMSE in a suggested GA fitness function. We calculated R\(^2\), RMSE to evaluate the models. We additionally calculated the standard deviation of validation metrics to estimate the model's stability. Also for models over-fitting or under-fitting analysis, we used mean difference (MD) index. The results suggested the use of polynomial kernel as the final model. Despite multiple methodical challenges raised from the composition and structure of the study site, we conclude that the combined use of polarimetric features (both dual and full) with spectral bands and indices can improve the GSV estimation over mixed broadleaf forests. This was partially supported by the use of proposed evaluation criterion within the GA, which helped to avoid the curse of dimensionality for the applied SVR and lowest over estimation or under estimation.}, language = {en} } @unpublished{LisinetskayaMitric2019, author = {Lisinetskaya, Polina G. and Mitric, Roland}, title = {Collective Response in DNA-Stabilized Silver Cluster Assemblies from First-Principles Simulations}, series = {The Journal of Physical Chemistry Letters}, journal = {The Journal of Physical Chemistry Letters}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-198729}, year = {2019}, abstract = {We investigate fluorescence resonant energy transfer and concurrent electron dynamics in a pair of DNA-stabilized silver clusters. For this purpose we introduce a methodology for the simulation of collective optoelectronic properties of coupled molecular aggregates starting from first-principles quantum chemistry, which can be further applied to a broad range of coupled molecular systems to study their electro-optical response. Our simulations reveal the existence of low-energy coupled excitonic states, which enable ultrafast energy transport between subunits, and give insight into the origin of the fluorescence signal in coupled DNA-stabilized silver clusters, which have been recently experimentally detected. Hence, we demonstrate the possibility of constructing ultrasmall energy transmission lines and optical converters based on these hybrid molecular systems.}, language = {en} } @unpublished{RoederPetersenIssleretal.2019, author = {R{\"o}der, Anja and Petersen, Jens and Issler, Kevin and Fischer, Ingo and Mitric, Roland and Poisson, Lionel}, title = {Exploring the Excited-State Dynamics of Hydrocarbon Radicals, Biradicals and Carbenes using Time-Resolved Photoelectron Spectroscopy and Field-Induced Surface Hopping Simulations}, series = {The Journal of Physical Chemistry A}, journal = {The Journal of Physical Chemistry A}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-198734}, year = {2019}, abstract = {Reactive hydrocarbon molecules like radicals, biradicals and carbenes are not only key players in combustion processes and interstellar and atmospheric chemistry, but some of them are also important intermediates in organic synthesis. These systems typically possess many low-lying, strongly coupled electronic states. After light absorption, this leads to rich photodynamics characterized by a complex interplay of nuclear and electronic motion, which is still not comprehensively understood and not easy to investigate both experimentally and theoretically. In order to elucidate trends and contribute to a more general understanding, we here review our recent work on excited-state dynamics of open-shell hydrocarbon species using time-resolved photoelectron spectroscopy and field-induced surface hopping simulations, and report new results on the excited-state dynamics of the tropyl and the 1-methylallyl radical. The different dynamics are compared, and the difficulties and future directions of time-resolved photoelectron spectroscopy and excited state dynamics simulations of open-shell hydrocarbon molecules are discussed.}, language = {en} } @unpublished{AuerhammerSchulzSchmiedeletal.2019, author = {Auerhammer, Nina and Schulz, Alexander and Schmiedel, Alexander and Holzapfel, Marco and Hoche, Joscha and R{\"o}hr, Merle I. S. and Mitric, Roland and Lambert, Christoph}, title = {Dynamic exciton localisation in a pyrene-BODIPY-pyrene dye conjugate}, series = {Physical Chemistry Chemical Physics}, journal = {Physical Chemistry Chemical Physics}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-198718}, year = {2019}, abstract = {The photophysics of a molecular triad consisting of a BODIPY dye and two pyrene chromophores attached in 2-position are investigated by steady state and fs-time resolved transient absorption spectroscopy as well as by field induced surface hopping (FISH) simulations. While the steady state measurements indicate moderate chromophore interactions within the triad, the time resolved measurements show upon pyrene excitation a delocalised excited state which localises onto the BODIPY chromophore with a time constant of 0.12 ps. This could either be interpreted as an internal conversion process within the excitonically coupled chromophores or as an energy transfer from the pyrenes to the BODIPY dye. The analysis of FISH-trajectories reveals an oscillatory behaviour where the excitation hops between the pyrene units and the BODIPY dye several times until finally they become localised on the BODIPY chromophore within 100 fs. This is accompanied by an ultrafast nonradiative relaxation within the excitonic manifold mediated by the nonadiabatic coupling. Averaging over an ensemble of trajectories allowed us to simulate the electronic state population dynamics and determine the time constants for the nonradiative transitions that mediate the ultrafast energy transfer and exciton localisation on BODIPY.}, language = {en} } @article{JungwirthYuMoustafaetal.2019, author = {Jungwirth, Gerhard and Yu, Tao and Moustafa, Mahmoud and Rapp, Carmen and Warta, Rolf and Jungk, Christine and Sahm, Felix and Dettling, Steffen and Zweckberger, Klaus and Lamszus, Katrin and Senft, Christian and Loehr, Mario and Keßler, Almuth F. and Ketter, Ralf and Westphal, Manfred and Debus, Juergen and von Deimling, Andreas and Simon, Matthias and Unterberg, Andreas and Abdollahi, Amir and Herold-Mende, Christel}, title = {Identification of KIF11 as a Novel Target in Meningioma}, series = {Cancers}, volume = {11}, journal = {Cancers}, number = {4}, issn = {2072-6694}, doi = {10.3390/cancers11040545}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-197402}, year = {2019}, abstract = {Kinesins play an important role in many physiological functions including intracellular vesicle transport and mitosis. The emerging role of kinesins in different cancers led us to investigate the expression and functional role of kinesins in meningioma. Therefore, we re-analyzed our previous microarray dataset of benign, atypical, and anaplastic meningiomas (n = 62) and got evidence for differential expression of five kinesins (KIFC1, KIF4A, KIF11, KIF14 and KIF20A). Further validation in an extended study sample (n = 208) revealed a significant upregulation of these genes in WHO°I to °III meningiomas (WHO°I n = 61, WHO°II n = 88, and WHO°III n = 59), which was most pronounced in clinically more aggressive tumors of the same WHO grade. Immunohistochemical staining confirmed a WHO grade-associated upregulated protein expression in meningioma tissues. Furthermore, high mRNA expression levels of KIFC1, KIF11, KIF14 and KIF20A were associated with shorter progression-free survival. On a functional level, knockdown of kinesins in Ben-Men-1 cells and in the newly established anaplastic meningioma cell line NCH93 resulted in a significantly inhibited tumor cell proliferation upon siRNA-mediated downregulation of KIF11 in both cell lines by up to 95\% and 71\%, respectively. Taken together, in this study we were able to identify the prognostic and functional role of several kinesin family members of which KIF11 exhibits the most promising properties as a novel prognostic marker and therapeutic target, which may offer new treatment options for aggressive meningiomas.}, language = {en} } @article{MayrKuenzerGessneretal.2019, author = {Mayr, Stefan and Kuenzer, Claudia and Gessner, Ursula and Klein, Igor and Rutzinger, Martin}, title = {Validation of earth observation time-series: a review for large-area and temporally dense land surface products}, series = {Remote Sensing}, volume = {11}, journal = {Remote Sensing}, number = {22}, issn = {2072-4292}, doi = {10.3390/rs11222616}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-193202}, year = {2019}, abstract = {Large-area remote sensing time-series offer unique features for the extensive investigation of our environment. Since various error sources in the acquisition chain of datasets exist, only properly validated results can be of value for research and downstream decision processes. This review presents an overview of validation approaches concerning temporally dense time-series of land surface geo-information products that cover the continental to global scale. Categorization according to utilized validation data revealed that product intercomparisons and comparison to reference data are the conventional validation methods. The reviewed studies are mainly based on optical sensors and orientated towards global coverage, with vegetation-related variables as the focus. Trends indicate an increase in remote sensing-based studies that feature long-term datasets of land surface variables. The hereby corresponding validation efforts show only minor methodological diversification in the past two decades. To sustain comprehensive and standardized validation efforts, the provision of spatiotemporally dense validation data in order to estimate actual differences between measurement and the true state has to be maintained. The promotion of novel approaches can, on the other hand, prove beneficial for various downstream applications, although typically only theoretical uncertainties are provided.}, language = {en} } @article{GrebinykPrylutskaBuchelnikovetal.2019, author = {Grebinyk, Anna and Prylutska, Svitlana and Buchelnikov, Anatoliy and Tverdokhleb, Nina and Grebinyk, Sergii and Evstigneev, Maxim and Matyshevska, Olga and Cherepanov, Vsevolod and Prylutskyy, Yuriy and Yashchuk, Valeriy and Naumovets, Anton and Ritter, Uwe and Dandekar, Thomas and Frohme, Marcus}, title = {C60 fullerene as an effective nanoplatform of alkaloid Berberine delivery into leukemic cells}, series = {Pharmaceutics}, volume = {11}, journal = {Pharmaceutics}, number = {11}, issn = {1999-4923}, doi = {10.3390/pharmaceutics11110586}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-193216}, pages = {586}, year = {2019}, abstract = {A herbal alkaloid Berberine (Ber), used for centuries in Ayurvedic, Chinese, Middle-Eastern, and native American folk medicines, is nowadays proved to function as a safe anticancer agent. Yet, its poor water solubility, stability, and bioavailability hinder clinical application. In this study, we have explored a nanosized carbon nanoparticle—C60 fullerene (C60)—for optimized Ber delivery into leukemic cells. Water dispersions of noncovalent C60-Ber nanocomplexes in the 1:2, 1:1, and 2:1 molar ratios were prepared. UV-Vis spectroscopy, dynamic light scattering (DLS), and atomic force microscopy (AFM) evidenced a complexation of the Ber cation with the negatively charged C60 molecule. The computer simulation showed that π-stacking dominates in Ber and C\(_{60}\) binding in an aqueous solution. Complexation with C\(_{60}\) was found to promote Ber intracellular uptake. By increasing C\(_{60}\) concentration, the C\(_{60}\)-Ber nanocomplexes exhibited higher antiproliferative potential towards CCRF-CEM cells, in accordance with the following order: free Ber < 1:2 < 1:1 < 2:1 (the most toxic). The activation of caspase 3/7 and accumulation in the sub-G1 phase of CCRF-CEM cells treated with C\(_{60}\)-Ber nanocomplexes evidenced apoptosis induction. Thus, this study indicates that the fast and easy noncovalent complexation of alkaloid Ber with C\(_{60}\) improved its in vitro efficiency against cancer cells.}, language = {en} } @article{LiLiLinketal.2019, author = {Li, Shan and Li, Xin and Link, Roman and Li, Ren and Deng, Liping and Schuldt, Bernhard and Jiang, Xiaomei and Zhao, Rongjun and Zheng, Jingming and Li, Shuang and Yin, Yafang}, title = {Influence of cambial age and axial height on the spatial patterns of xylem traits in Catalpa bungei, a ring-porous tree species native to China}, series = {Forests}, volume = {10}, journal = {Forests}, number = {8}, issn = {1999-4907}, doi = {10.3390/f10080662}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-196297}, year = {2019}, abstract = {Studying how cambial age and axial height affects wood anatomical traits may improve our understanding of xylem hydraulics, heartwood formation and axial growth. Radial strips were collected from six different heights (0-11.3 m) along the main trunk of three Manchurian catalpa (Catalpa bungei) trees, yielding 88 samples. In total, thirteen wood anatomical vessel and fiber traits were observed usinglight microscopy (LM) and scanning electron microscopy (SEM), and linear models were used to analyse the combined effect of axial height, cambial age and their interaction. Vessel diameter differed by about one order of magnitude between early- and latewood, and increased significantly with both cambial age and axial height in latewood, while it was positively affected by cambial age and independent of height in earlywood. Vertical position further had a positive effect on earlywood vessel density, and negative effects on fibre wall thickness, wall thickness to diameter ratio and length. Cambial age had positive effects on the pit membrane diameter and vessel element length, while the annual diameter growth decreased with both cambial age and axial position. In contrast, early- and latewood fiber diameter were unaffected by both cambial age and axial height. We further observed an increasing amount of tyloses from sapwood to heartwood, accompanied by an increase of warty layers and amorphous deposits on cell walls, bordered pit membranes and pit apertures. This study highlights the significant effects of cambial age and vertical position on xylem anatomical traits, and confirms earlier work that cautions to take into account xylem spatial position when interpreting wood anatomical structures, and thus, xylem hydraulic functioning.}, language = {en} } @article{AbdullahiWesselHuberetal.2019, author = {Abdullahi, Sahra and Wessel, Birgit and Huber, Martin and Wendleder, Anna and Roth, Achim and Kuenzer, Claudia}, title = {Estimating penetration-related X-band InSAR elevation bias: a study over the Greenland ice sheet}, series = {Remote Sensing}, volume = {11}, journal = {Remote Sensing}, number = {24}, issn = {2072-4292}, doi = {10.3390/rs11242903}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-193902}, year = {2019}, abstract = {Accelerating melt on the Greenland ice sheet leads to dramatic changes at a global scale. Especially in the last decades, not only the monitoring, but also the quantification of these changes has gained considerably in importance. In this context, Interferometric Synthetic Aperture Radar (InSAR) systems complement existing data sources by their capability to acquire 3D information at high spatial resolution over large areas independent of weather conditions and illumination. However, penetration of the SAR signals into the snow and ice surface leads to a bias in measured height, which has to be corrected to obtain accurate elevation data. Therefore, this study purposes an easy transferable pixel-based approach for X-band penetration-related elevation bias estimation based on single-pass interferometric coherence and backscatter intensity which was performed at two test sites on the Northern Greenland ice sheet. In particular, the penetration bias was estimated using a multiple linear regression model based on TanDEM-X InSAR data and IceBridge laser-altimeter measurements to correct TanDEM-X Digital Elevation Model (DEM) scenes. Validation efforts yielded good agreement between observations and estimations with a coefficient of determination of R\(^2\) = 68\% and an RMSE of 0.68 m. Furthermore, the study demonstrates the benefits of X-band penetration bias estimation within the application context of ice sheet elevation change detection.}, language = {en} } @unpublished{Dandekar2019, author = {Dandekar, Thomas}, title = {Biological heuristics applied to cosmology suggests a condensation nucleus as start of our universe and inflation cosmology replaced by a period of rapid Weiss domain-like crystal growth}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-183945}, pages = {24}, year = {2019}, abstract = {Cosmology often uses intricate formulas and mathematics to derive new theories and concepts. We do something different in this paper: We look at biological processes and derive from these heuristics so that the revised cosmology agrees with astronomical observations but does also agree with standard biological observations. We show that we then have to replace any type of singularity at the start of the universe by a condensation nucleus and that the very early period of the universe usually assumed to be inflation has to be replaced by a period of rapid crystal growth as in Weiss magnetization domains. Impressively, these minor modifications agree well with astronomical observations including removing the strong inflation perturbations which were never observed in the recent BICEP2 experiments. Furthermore, looking at biological principles suggests that such a new theory with a condensation nucleus at start and a first rapid phase of magnetization-like growth of the ordered, physical laws obeying lattice we live in is in fact the only convincing theory of the early phases of our universe that also is compatible with current observations. We show in detail in the following that such a process of crystal creation, breaking of new crystal seeds and ultimate evaporation of the present crystal readily leads over several generations to an evolution and selection of better, more stable and more self-organizing crystals. Moreover, this explains the "fine-tuning" question why our universe is fine-tuned to favor life: Our Universe is so self-organizing to have enough offspring and the detailed physics involved is at the same time highly favorable for all self-organizing processes including life. This biological theory contrasts with current standard inflation cosmologies. The latter do not perform well in explaining any phenomena of sophisticated structure creation or self-organization. As proteins can only thermodynamically fold by increasing the entropy in the solution around them we suggest for cosmology a condensation nucleus for a universe can form only in a "chaotic ocean" of string-soup or quantum foam if the entropy outside of the nucleus rapidly increases. We derive an interaction potential for 1 to n-dimensional strings or quantum-foams and show that they allow only 1D, 2D, 4D or octonion interactions. The latter is the richest structure and agrees to the E8 symmetry fundamental to particle physics and also compatible with the ten dimensional string theory E8 which is part of the M-theory. Interestingly, any other interactions of other dimensionality can be ruled out using Hurwitz compositional theorem. Crystallization explains also extremely well why we have only one macroscopic reality and where the worldlines of alternative trajectories exist: They are in other planes of the crystal and for energy reasons they crystallize mostly at the same time, yielding a beautiful and stable crystal. This explains decoherence and allows to determine the size of Planck´s quantum h (very small as separation of crystal layers by energy is extremely strong). Ultimate dissolution of real crystals suggests an explanation for dark energy agreeing with estimates for the "big rip". The halo distribution of dark matter favoring galaxy formation is readily explained by a crystal seed starting with unit cells made of normal and dark matter. That we have only matter and not antimatter can be explained as there may be right handed mattercrystals and left-handed antimatter crystals. Similarly, real crystals are never perfect and we argue that exactly such irregularities allow formation of galaxies, clusters and superclusters. Finally, heuristics from genetics suggest to look for a systems perspective to derive correct vacuum and Higgs Boson energies.}, language = {en} } @phdthesis{Irmisch2019, author = {Irmisch, Linda}, title = {The role of septins and other regulatory proteins in abscission and midbody fate in C. elegans embryos}, doi = {10.25972/OPUS-18324}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-183244}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {Abscission marks the last step of cytokinesis and gives rise to two physically separated daughter cells and a midbody remnant. This work studies abscission by examining the extent of the abscission failure in C. elegans septin and ESCRT mutants with the help of the ZF1-degradation technique. The ZF1 technique is also applied to discern a possible role for PI3K during abscission. Lastly, we test the role of proteins required for macroautophagy but not for LC3-associated phagocytosis (LAP) and show that after release into the extracellular space, the midbody is resolved via LAP.}, subject = {Zellteilung}, language = {en} } @phdthesis{Halbig2019, author = {Halbig, Benedikt}, title = {Surface Raman Spectroscopy on Ordered Metal Adsorbates on Semiconductor Substrates and Thin Intermetallic Films}, doi = {10.25972/OPUS-18138}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-181385}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {Surface systems attract great scientific attention due to novel and exotic properties. The atomically structured surfaces lead to a reduced dimensionality which alters electronic correlations, vibrational properties, and their impact on each other. The emerging physical phenomena are not observed for related bulk materials. In this thesis, ordered (sub)monolayers of metal atoms (Au and Sn) on semiconductor substrates (Si(111) and Ge(111)) and ultrathin intermetallic films (CePt5 and LaPt5) on metal substrate (Pt(111)) are investigated by polarized in situ surface Raman spectroscopy. The surface Raman spectra exhibit features of specific elementary excitations like surface phonons and electronic excitations, which are suitable to gain fundamental insights into the surface systems. The Au-induced surface reconstructions (5x2) and (r3xr3) constitute quasi-one- and two-dimensional Au structures on the Si(111) substrate, respectively. The new reconstruction-related Raman peaks are analyzed with respect to their polarization and temperature behavior. The Raman results are combined with firstprinciples calculations to decide between different proposed structural models. The Au-(5x2)/Si(111) reconstruction is best described by the model of Kwon and Kang, while for Au-(r3xr3)/Si(111) the conjugate honeycomb-chained-trimer model is favored. The Sn-induced reconstructions with 1/3 monolayer on Ge(111) and Si(111) are investigated to reveal their extraordinary temperature behavior. Specific surface phonon modes are identified that are predicted within the dynamical fluctuation model. Contrary to Sn/Si(111), the corresponding vibrational mode of Sn/Ge(111) exhibits a nearly harmonic character. The reversible structural phase transition of Sn/Ge(111) from (r3xr3) to (3x3) is observed, while no phase transition is apparent for Sn/Si(111). Moreover, Raman spectra of the closely related systems Sn-(2r3x2r3)/Si(111) and thin films of a-Sn as well as the clean semiconductor surfaces Si(111)-(7x7) and Ge(111)-c(2x8) are evaluated and compared. The CePt5/Pt(111) system hosts 4f electrons whose energy levels are modified by the crystal field and are relevant for a description of the observed Kondo physics. In contrast, isostructural LaPt5/Pt(111) has no 4f electrons. For CePt5/Pt(111), distinct Raman features due to electronic Raman scattering can be unambiguously related to transitions between the crystal-field states which are depth-dependent. This assignment is supported by comparison to LaPt5/Pt(111) and group theoretical considerations. Furthermore, the vibrational properties of CePt5 and LaPt5 reveal interesting similarities but also striking differences like an unusual temperature shift of a vibration mode of CePt5, which is related to the influence of 4f electrons.}, subject = {Raman-Spektroskopie}, language = {en} } @article{BeerSchenkHelfrichFoersteretal.2019, author = {Beer, Katharina and Schenk, Mariela and Helfrich-F{\"o}rster, Charlotte and Holzschuh, Andrea}, title = {The circadian clock uses different environmental time cues to synchronize emergence and locomotion of the solitary bee Osmia bicornis}, series = {Scientific Reports}, volume = {9}, journal = {Scientific Reports}, doi = {10.1038/s41598-019-54111-3}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-202721}, pages = {17748}, year = {2019}, abstract = {Life on earth adapted to the daily reoccurring changes in environment by evolving an endogenous circadian clock. Although the circadian clock has a crucial impact on survival and behavior of solitary bees, many aspects of solitary bee clock mechanisms remain unknown. Our study is the first to show that the circadian clock governs emergence in Osmia bicornis, a bee species which overwinters as adult inside its cocoon. Therefore, its eclosion from the pupal case is separated by an interjacent diapause from its emergence in spring. We show that this bee species synchronizes its emergence to the morning. The daily rhythms of emergence are triggered by temperature cycles but not by light cycles. In contrast to this, the bee's daily rhythms in locomotion are synchronized by light cycles. Thus, we show that the circadian clock of O. bicornis is set by either temperature or light, depending on what activity is timed. Light is a valuable cue for setting the circadian clock when bees have left the nest. However, for pre-emerged bees, temperature is the most important cue, which may represent an evolutionary adaptation of the circadian system to the cavity-nesting life style of O. bicornis.}, language = {en} } @article{MaierhoferFlunkertOshimaetal.2019, author = {Maierhofer, Anna and Flunkert, Julia and Oshima, Junko and Martin, George M. and Poot, Martin and Nanda, Indrajit and Dittrich, Marcus and M{\"u}ller, Tobias and Haaf, Thomas}, title = {Epigenetic signatures of Werner syndrome occur early in life and are distinct from normal epigenetic aging processes}, series = {Aging Cell}, volume = {18}, journal = {Aging Cell}, doi = {10.1111/acel.12995}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-202733}, pages = {e12995}, year = {2019}, abstract = {Werner Syndrome (WS) is an adult-onset segmental progeroid syndrome. Bisulfite pyrosequencing of repetitive DNA families revealed comparable blood DNA methylation levels between classical (18 WRN-mutant) or atypical WS (3 LMNA-mutant and 3 POLD1-mutant) patients and age- and sex-matched controls. WS was not associated with either age-related accelerated global losses of ALU, LINE1, and α-satellite DNA methylations or gains of rDNA methylation. Single CpG methylation was analyzed with Infinium MethylationEPIC arrays. In a correspondence analysis, atypical WS samples clustered together with the controls and were clearly separated from classical WS, consistent with distinct epigenetic pathologies. In classical WS, we identified 659 differentially methylated regions (DMRs) comprising 3,656 CpG sites and 613 RefSeq genes. The top DMR was located in the HOXA4 promoter. Additional DMR genes included LMNA, POLD1, and 132 genes which have been reported to be differentially expressed in WRN-mutant/depleted cells. DMRs were enriched in genes with molecular functions linked to transcription factor activity and sequence-specific DNA binding to promoters transcribed by RNA polymerase II. We propose that transcriptional misregulation of downstream genes by the absence of WRN protein contributes to the variable premature aging phenotypes of WS. There were no CpG sites showing significant differences in DNA methylation changes with age between WS patients and controls. Genes with both WS- and age-related methylation changes exhibited a constant offset of methylation between WRN-mutant patients and controls across the entire analyzed age range. WS-specific epigenetic signatures occur early in life and do not simply reflect an acceleration of normal epigenetic aging processes.}, language = {en} } @article{FayezFeineisAkeAssietal.2019, author = {Fayez, Shaimaa and Feineis, Doris and Ak{\´e} Assi, Laurent and Seo, Ean-Jeong and Efferth, Thomas and Bringmann, Gerhard}, title = {Ancistrobreveines A-D and related dehydrogenated naphthylisoquinoline alkaloids with antiproliferative activities against leukemia cells, from the West African liana Ancistrocladus abbreviatus}, series = {RSC Advances}, volume = {9}, journal = {RSC Advances}, number = {28}, doi = {10.1039/C9RA03105G}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-201686}, pages = {15738-15748}, year = {2019}, abstract = {A unique series of six biaryl natural products displaying four different coupling types (5,10 , 7,10 , 7,80 , and 5,80) were isolated from the roots of the West African liana Ancistrocladus abbreviatus (Ancistrocladaceae). Although at first sight structurally diverse, these secondary metabolites all have in common that they belong to the rare group of naphthylisoquinoline alkaloids with a fully dehydrogenated isoquinoline portion. Among the African Ancistrocladus species, A. abbreviatus is so far only the second one that was found to produce compounds with such a molecular entity. Here, we report on four new representatives, named ancistrobreveines A-D (12-14, and 6). They were identified along with the two known alkaloids 6-O-methylhamateine (4) and entdioncophylleine A (10). The two latter naphthylisoquinolines had so far only been detected in Ancistrocladus species from Southeast Asia. All of these fully dehydrogenated alkaloids have in common being optically active despite the absence of stereogenic centers, due to the presence of the rotationally hindered biaryl axis as the only element of chirality. Except for ent-dioncophylleine A (10), which lacks an oxygen function at C-6, the ancistrobreveines A-D (12-14, and 6) and 6-O-methylhamateine (4) are 6-oxygenated alkaloids, and are, thus, typical 'Ancistrocladaceae-type' compounds. Ancistrobreveine C (14), is the first - and so far only - example of a 7,80-linked fully dehydrogenated naphthylisoquinoline discovered in nature that is configurationally stable at the biaryl axis. The stereostructures of the new alkaloids were established by spectroscopic (in particular HRESIMS, 1D and 2D NMR) and chiroptical (electronic circular dichroism) methods. Ancistrobreveine C (14) and 6-O-methylhamateine (4) exhibited strong antiproliferative activities against drug-sensitive acute lymphoblastic CCRF-CEM leukemia cells and their multidrugresistant subline, CEM/ADR5000.}, language = {en} } @article{TrappeKneisel2019, author = {Trappe, Julian and Kneisel, Christof}, title = {Geophysical and sedimentological investigations of Peatlands for the assessment of lithology and subsurface water pathways}, series = {Geosciences}, volume = {9}, journal = {Geosciences}, number = {3}, doi = {10.3390/geosciences9030118}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-201699}, pages = {118}, year = {2019}, abstract = {Peatlands located on slopes (herein called slope bogs) are typical landscape units in the Hunsrueck, a low mountain range in Southwestern Germany. The pathways of the water feeding the slope bogs have not yet been documented and analyzed. The identification of the different mechanisms allowing these peatlands to originate and survive requires a better understanding of the subsurface lithology and hydrogeology. Hence, we applied a multi-method approach to two case study sites in order to characterize the subsurface lithology and to image the variable spatio-temporal hydrological conditions. The combination of Electrical Resistivity Tomography (ERT) and an ERT-Monitoring and Ground Penetrating Radar (GPR), in conjunction with direct methods and data (borehole drilling and meteorological data), allowed us to gain deeper insights into the subsurface characteristics and dynamics of the peatlands and their catchment area. The precipitation influences the hydrology of the peatlands as well as the interflow in the subsurface. Especially, the geoelectrical monitoring data, in combination with the precipitation and temperature data, indicate that there are several forces driving the hydrology and hydrogeology of the peatlands. While the water content of the uppermost layers changes with the weather conditions, the bottom layer seems to be more stable and changes to a lesser extent. At the selected case study sites, small differences in subsurface properties can have a huge impact on the subsurface hydrogeology and the water paths. Based on the collected data, conceptual models have been deduced for the two case study sites.}, language = {en} } @article{SchulerMurauerStangletal.2019, author = {Schuler, Michael and Murauer, Kathrin and Stangl, Stephanie and Grau, Anna and Gabriel, Katharina and Podger, Lauren and Heuschmann, Peter U. and Faller, Hermann}, title = {Pre-post changes in main outcomes of medical rehabilitation in Germany: protocol of a systematic review and meta-analysis of individual participant and aggregated data}, series = {BMJ Open}, volume = {9}, journal = {BMJ Open}, number = {5}, doi = {10.1136/bmjopen-2018-023826}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-201929}, pages = {e023826}, year = {2019}, abstract = {Introduction Multidisciplinary, complex rehabilitation interventions are an important part of the treatment of chronic diseases. However, little is known about the effectiveness of routine rehabilitation interventions within the German healthcare system. Due to the nature of the social insurance system in Germany, randomised controlled trials examining the effects of rehabilitation interventions are challenging to implement and scarcely accessible. Consequently, alternative pre-post designs can be employed to assess pre-post effects of medical rehabilitation programmes. We present a protocol of systematic review and meta-analysis methods to assess the pre-post effects of rehabilitation interventions in Germany. Methods and analysis The respective study will be conducted within the Preferred Reporting Items for Systematic Reviews and Meta-Analysis guidelines. A systematic literature review will be conducted to identify studies reporting the pre-post effects (start of intervention vs end of intervention or later) in German healthcare. Studies investigating the following disease groups will be included: orthopaedics, rheumatology, oncology, pulmonology, cardiology, endocrinology, gastroenterology and psychosomatics. The primary outcomes of interest are physical/mental quality of life, physical functioning and social participation for all disease groups as well as pain (orthopaedic and rheumatologic patients only), blood pressure (cardiac patients only), asthma control (patients with asthma only), dyspnoea (patients with chronic obstructive pulmonary disease only) and depression/anxiety (psychosomatic patients only). We will invite the principal investigators of the identified studies to provide additional individual patient data. We aim to perform the meta-analyses using individual patient data as well as aggregate data. We will examine the effects of both study-level and patient-level moderators by using a meta-regression method. Ethics and dissemination Only studies that have received institutional approval from an ethics committee and present anonymised individual patient data will be included in the meta-analysis. The results will be presented in a peer-reviewed publication and at research conferences. A declaration of no objection by the ethics committee of the University of W{\"u}rzburg is available (number 20180411 01).}, language = {en} } @article{MufusamaFeineisMudogoetal.2019, author = {Mufusama, Jean-Pierre and Feineis, Doris and Mudogo, Virima and Kaiser, Marcel and Brun, Reto and Bringmann, Gerhard}, title = {Antiprotozoal dimeric naphthylisoquinolines, mbandakamines B\(_3\) and B\(_4\), and related 5,8′-coupled monomeric alkaloids, ikelacongolines A-D, from a Congolese Ancistrocladus liana}, series = {RSC Advances}, volume = {9}, journal = {RSC Advances}, number = {21}, doi = {10.1039/C9RA01784D}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-201141}, pages = {12034-12046}, year = {2019}, abstract = {From the leaves of a botanically and phytochemically as yet unexplored Ancistrocladus liana discovered in the rainforests of the Central region of the Democratic Republic of the Congo in the vicinity of the town of Ikela, six new naphthylisoquinoline alkaloids were isolated, viz., two constitutionally unsymmetric dimers, the mbandakamines B\(_3\) (3) and B\(_4\) (4), and four related 5,8′-linked monomeric alkaloids, named ikelacongolines A-D (5a, 5b, 6, and 7). The dimers 3 and 4 are structurally unusual quateraryls comprising two 5,8′-coupled monomers linked via a sterically strongly constrained 6′,1′′-connection between their naphthalene units. These compounds contain seven elements of chirality, four stereogenic centers and three consecutive chiral axes. They were identified along with two known related compounds, the mbandakamines A (1) and B\(_2\) (2), which had so far only been detected in two Ancistrocladus species indigenous to the Northwestern Congo Basin. In addition, five known monomeric alkaloids, previously found in related Central African Ancistrocladus species, were isolated from the here investigated Congolese liana, three of them belonging to the subclass of 5,8′-coupled naphthylisoquinoline alkaloids, whereas two compounds exhibited a less frequently occurring 7,8′-biaryl linkage. The stereostructures of the new alkaloids were established by spectroscopic (in particular HRESIMS, 1D and 2D NMR), chemical (oxidative degradation), and chiroptical (electronic circular dichroism) methods. The mbandakamines B\(_3\) (3) and B\(_4\) (4) displayed pronounced activities in vitro against the malaria parasite Plasmodium falciparum and the pathogen of African sleeping sickness, Trypanosoma brucei rhodesiense.}, language = {en} } @article{KarlNandiniColacoSchulteetal.2019, author = {Karl, Franziska and Nandini Cola{\c{c}}o, Maria B. and Schulte, Annemarie and Sommer, Claudia and {\"U}{\c{c}}eyler, Nurcan}, title = {Affective and cognitive behavior is not altered by chronic constriction injury in B7-H1 deficient and wildtype mice}, series = {BMC Neuroscience}, volume = {20}, journal = {BMC Neuroscience}, doi = {10.1186/s12868-019-0498-4}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-200540}, pages = {16}, year = {2019}, abstract = {Background Chronic neuropathic pain is often associated with anxiety, depressive symptoms, and cognitive impairment with relevant impact on patients` health related quality of life. To investigate the influence of a pro-inflammatory phenotype on affective and cognitive behavior under neuropathic pain conditions, we assessed mice deficient of the B7 homolog 1 (B7-H1), a major inhibitor of inflammatory response. Results Adult B7-H1 ko mice and wildtype littermates (WT) received a chronic constriction injury (CCI) of the sciatic nerve, and we assessed mechanical and thermal sensitivity at selected time points. Both genotypes developed mechanical (p < 0.001) and heat hypersensitivity (p < 0.01) 7, 14, and 20 days after surgery. We performed three tests for anxiety-like behavior: the light-dark box, the elevated plus maze, and the open field. As supported by the results of these tests for anxiety-like behavior, no relevant differences were found between genotypes after CCI. Depression-like behavior was assessed using the forced swim test. Also, CCI had no effect on depression like behavior. For cognitive behavior, we applied the Morris water maze for spatial learning and memory and the novel object recognition test for object recognition, long-, and short-term memory. Learning and memory did not differ in B7-H1 ko and WT mice after CCI. Conclusions Our study reveals that the impact of B7-H1 on affective-, depression-like- and learning-behavior, and memory performance might play a subordinate role in mice after nerve lesion.}, language = {en} } @article{MietrachSchlosserGeibel2019, author = {Mietrach, Nicole and Schlosser, Andreas and Geibel, Sebastian}, title = {An extracellular domain of the EsaA membrane component of the type VIIb secretion system: expression, purification and crystallization}, series = {Acta Crystallographica Section F}, volume = {75}, journal = {Acta Crystallographica Section F}, number = {12}, doi = {10.1107/S2053230X1901495X}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-213681}, pages = {725-730}, year = {2019}, abstract = {The membrane protein EsaA is a conserved component of the type VIIb secretion system. Limited proteolysis of purified EsaA from Staphylococcus aureus USA300 identified a stable 48 kDa fragment, which was mapped by fingerprint mass spectrometry to an uncharacterized extracellular segment of EsaA. Analysis by circular dichroism spectroscopy showed that this fragment folds into a single stable domain made of mostly α-helices with a melting point of 34.5°C. Size-exclusion chromatography combined with multi-angle light scattering indicated the formation of a dimer of the purified extracellular domain. Octahedral crystals were grown in 0.2 M ammonium citrate tribasic pH 7.0, 16\% PEG 3350 using the hanging-drop vapor-diffusion method. Diffraction data were analyzed to 4.0 {\AA} resolution, showing that the crystals belonged to the enantiomorphic tetragonal space groups P41212 or P43212, with unit-cell parameters a = 197.5, b = 197.5, c = 368.3 {\AA}, α = β = γ = 90°.}, language = {en} } @phdthesis{Kreikenbohm2019, author = {Kreikenbohm, Annika Franziska Eleonore}, title = {Classifying the high-energy sky with spectral timing methods}, doi = {10.25972/OPUS-19205}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-192054}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {Active galactic nuclei (AGN) are among the brightest and most frequent sources on the extragalactic X-ray and gamma-ray sky. Their central supermassive blackhole generates an enormous luminostiy through accretion of the surrounding gas. A few AGN harbor highly collimated, powerful jets in which are observed across the entire electromagnetic spectrum. If their jet axis is seen in a small angle to our line-of-sight (these objects are then called blazars) jet emission can outshine any other emission component from the system. Synchrotron emission from electrons and positrons clearly prove the existence of a relativistic leptonic component in the jet plasma. But until today, it is still an open question whether heavier particles, especially protons, are accelerated as well. If this is the case, AGN would be prime candidates for extragalactic PeV neutrino sources that are observed on Earth. Characteristic signatures for protons can be hidden in the variable high-energy emission of these objects. In this thesis I investigated the broadband emission, particularly the high-energy X-ray and gamma-ray emission of jetted AGN to address open questions regarding the particle acceleration and particle content of AGN jets, or the evolutionary state of the AGN itself. For this purpose I analyzed various multiwavelength observations from optical to gamma-rays over a period of time using a combination of state-of-the-art spectroscopy and timing analysis. By nature, AGN are highly variable. Time-resolved spectral analysis provided a new dynamic view of these sources which helped to determine distinct emission processes that are difficult to disentangle from spectral or timing methods alone. Firstly, this thesis tackles the problem of source classification in order to facilitate the search for interesting sources in large data archives and characterize new transient sources. I use spectral and timing analysis methods and supervised machine learning algorithms to design an automated source classification pipeline. The test and training sample were based on the third XMM-Newton point source catalog (3XMM-DR6). The set of input features for the machine learning algorithm was derived from an automated spectral modeling of all sources in the 3XMM-DR6, summing up to 137200 individual detections. The spectral features were complemented by results of a basic timing analysis as well as multiwavelength information provided by catalog cross-matches. The training of the algorithm and application to a test sample showed that the definition of the training sample was crucial: Despite oversampling minority source types with synthetic data to balance out the training sample, the algorithm preferably predicted majority source types for unclassified objects. In general, the training process showed that the combination of spectral, timing and multiwavelength features performed best with the lowest misclassification rate of \\sim2.4\\\%. The methods of time-resolved spectroscopy was then used in two studies to investigate the properties of two individual AGN, Mrk 421 and PKS 2004-447, in detail. Both objects belong to the class of gamma-ray emitting AGN. A very elusive sub-class are gamma-ray emitting Narrow Line Seyfert 1 (gNLS1) galaxies. These sources have been discovered as gamma-ray sources only recently in 2010 and a connection to young radio galaxies especially compact steep spectrum (CSS) radio sources has been proposed. The only gNLS1 on the Southern Hemisphere so far is PKS2004-447 which lies at the lower end of the luminosity distribution of gNLS1. The source is part of the TANAMI VLBI program and is regularly monitored at radio frequencies. In this thesis, I presented and analyzed data from a dedicated multiwavelength campaign of PKS 2004-447 which I and my collaborators performed during 2012 and which was complemented by individual observations between 2013 and 2016. I focussed on the detailed analysis of the X-ray emission and a first analysis of its broadband spectrum from radio to gamma-rays. Thanks to the dynamic SED I could show that earlier studies misinterpreted the optical spectrum of the source which had led to an underestimation of the high-energy emission and had ignited a discussion on the source class. I show that the overall spectral properties are consistent with dominating jet emission comprised of synchrotron radiation and inverse Compton scattering from accelerated leptons. The broadband emission is very similar to typical examples of a certain type of blazars (flat-spectrum radio quasars) and does not present any unusual properties in comparison. Interestingly, the VLBI data showed a compact jet structure and a steep radio spectrum consistent with a compact steep spectrum source. This classified PKS 2004-447 as a young radio galaxy, in which the jet is still developing. The investigation of Mrk 421 introduced the blazar monitoring program which I and collaborator have started in 2014. By observing a blazar simultaneously from optical, X-ray and gamma-ray bands during a VHE outbursts, the program aims at providing extraordinary data sets to allow for the generation of a series of dynamical SEDs of high spectral and temporal resolution. The program makes use of the dense VHE monitoring by the FACT telescope. So far, there are three sources in our sample that we have been monitoring since 2014. I presented the data and the first analysis of one of the brightest and most variable blazar, Mrk 421, which had a moderate outbreak in 2015 and triggered our program for the first time. With spectral timing analysis, I confirmed a tight correlation between the X-ray and TeV energy bands, which indicated that these jet emission components are causally connected. I discovered that the variations of the optical band were both correlated and anti-correlated with the high-energy emission, which suggested an independent emission component. Furthermore, the dynamic SEDs showed two different flaring behaviors, which differed in the presence or lack of a peak shift of the low-energy emission hump. These results further supported the hypothesis that more than one emission region contributed to the broadband emission of Mrk 421 during the observations. Overall,the studies presented in this thesis demonstrated that time-resolved spectroscopy is a powerful tool to classify both source types and emission processes of astronomical objects, especially relativistic jets in AGN, and thus provide a deeper understanding and new insights of their physics and properties.}, subject = {Astronomie}, language = {en} } @phdthesis{Goetz2019, author = {G{\"o}tz, Sebastian Reinhold}, title = {Nonlinear spectroscopy at the diffraction limit: probing ultrafast dynamics with shaped few-cycle laser pulses}, doi = {10.25972/OPUS-19213}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-192138}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {An experimental setup for probing ultrafast dynamics at the diffraction limit was developed, characterized and demonstrated in the scope of the thesis, aiming for optical investigations while simultaneously approaching the physical limits on the length and timescale. An overview of this experimental setup was given in Chapter 2, as well as the considerations that led to the selection of the individual components. Broadband laser pulses with a length of 9.3 fs, close to the transform limit of 7.6 fs, were focused in a NA = 1.4 immersion oil objective, to the diffraction limit of below 300 nm (FWHM). The spatial focus shape was characterized with off-resonance gold nanorod scatterers scanned through the focal volume. For further insights into the functionality and limitations of the pulse shaper, its calibration procedure was reviewed. The deviations between designed and experimental pulse shapes were attributed to pulse-shaper artifacts, including voltage-dependent inter-layer as well as intra-layer LCD-pixel crosstalk, Fabry-P{\´e}rot-type reflections in the LCD layers, and space-time coupling. A pixel-dependent correction was experimentally carried out, which can be seen as an extension of the initial calibration to all possible voltage combinations of the two LCD layers. The capabilities of the experimental setup were demonstrated in two types of experiments, targeting the nonlinearity of gold (Chapter 3) as well as two-dimensional spectroscopy at micro-structured surfaces (Chapter 4). Investigating thin films, an upper bound for the absolute value for the imaginary part of the nonlinear refractive index of gold could be set to |n′′ 2 (Au)| < 0.6·10-16 m2/W, together with |n′ 2 (Au)| < 1.2·10-16 m2/W as an upper bound for the absolute value of the real part. Finite-difference time-domain simulations on y-shaped gold nanostructures indicated that a phase change of ∆Φ ≥ 0.07 rad between two plasmonic modes would induce a sufficient change in the spatial contrast of emission to the far-field to be visible in the experiment. As the latter could not be observed, this value of ∆Φ was determined as the upper bound for the experimentally induced phase change. An upper bound of 52 GW/cm2 was found for the damage threshold. In Chapter 4, a novel method for nonlinear spectroscopy on surfaces was presented. Termed coherent two-dimensional fluorescence micro-spectroscopy, it is capable of exploring ultrafast dynamics in nanostructures and molecular systems at the diffraction limit. Two-dimensional spectra of spatially isolated hotspots in structured thin films of fluorinated zinc phthalocyanine (F16ZnPc) dye were taken with a 27-step phase-cycling scheme. Observed artifacts in the 2D maps were identified as a consequence from deviations between the desired and the experimental pulse shapes. The optimization procedures described in Chapter 2 successfully suppressed the deviations to a level where the separation from the nonlinear sample response was feasible. The experimental setup and methods developed and presented in the scope of this thesis demonstrate its flexibility and capability to study microscopic systems on surfaces. The systems exemplarily shown are consisting of metal-organic dyes and metallic nanostructures, represent samples currently under research in the growing fields of organic semiconductors and plasmonics.}, subject = {Ultrakurzzeitspektroskopie}, language = {en} } @phdthesis{Gabel2019, author = {Gabel, Judith}, title = {Interface Engineering of Functional Oxides: A Photoemission Study}, doi = {10.25972/OPUS-19227}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-192275}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {Due to their complex chemical structure transition metal oxides display many fascinating properties which conventional semiconductors lack. For this reason transition metal oxides hold a lot of promise for novel electronic functionalities. Just as in conventional semiconductor heterostructures, the interfaces between different materials play a key role in oxide electronics. The textbook example is the (001) interface between the band insulators LaAlO\(_3\) and SrTiO\(_3\) at which a two-dimensional electron system (2DES) forms. In order to utilize such a 2DES in prospective electronic devices, it is vital that the electronic properties of the interface can be controlled and manipulated at will. Employing photoelectron spectroscopy as well as electronic transport measurements, this thesis examines how such interface engineering can be realized in the case of the LaAlO\(_3\)/SrTiO\(_3\) heterostructure: By photoemission we manage to unambiguously distinguish the different mechanisms by which SrTiO\(_3\) can be doped with electrons. An electronic reconstruction is identified as the driving mechanism to render stoichiometric LaAlO\(_3\)/SrTiO\(_3\) interfaces metallic. The doping of the LaAlO\(_3\)/SrTiO\(_3\) heterointerface can furthermore be finely adjusted by changing the oxygen vacancy \(V_{\mathrm{O}}\) concentration in the heterostructure. Combining intense x-ray irradiation with oxygen dosing, we even achieve control over the \(V_{\mathrm{O}}\) concentration and, consequently, the doping in the photoemission experiment itself. Exploiting this method, we investigate how the band diagram of SrTiO\(_3\)-based heterostructures changes as a function of the \(V_{\mathrm{O}}\) concentration and temperature by hard x-ray photoemission spectroscopy. With the band bending in the SrTiO\(_3\) substrate changing as a function of the \(V_{\mathrm{O}}\) concentration, the interfacial band alignment is found to vary as well. The relative permittivity of the SrTiO\(_3\) substrate and, in particular, its dependence on temperature and electric field is identified as one of the essential parameters determining the electronic interface properties. That is also why the sample temperature affects the charge carrier distribution. The mobile charge carriers are shown to shift toward the SrTiO\(_3\) bulk when the sample temperature is lowered. This effect is, however, only pronounced if the total charge carrier concentration is small. At high charge carrier concentrations the charge carriers are always confined to the interface, independent of the sample temperature. The dependence of the electronic interface properties on the \(V_{\mathrm{O}}\) concentration is also investigated by a complementary method, viz. by electronic transport measurements. These experiments confirm that the mobile charge carrier concentration increases concomitantly to the \(V_{\mathrm{O}}\) concentration. The mobility of the charge carriers changes as well depending on the \(V_{\mathrm{O}}\) concentration. Comparing spectroscopy and transport results, we are able to draw conclusions about the processes limiting the mobility in electronic transport. We furthermore build a memristor device from our LaAlO\(_3\)/SrTiO\(_3\) heterostructures and demonstrate how interface engineering is used in practice in such novel electronic applications. This thesis furthermore investigates how the electronic structure of the 2DES is affected by the interface topology: We show that, akin to the (001) LaAlO\(_3\)/SrTiO\(_3\) heterointerface, an electronic reconstruction also renders the (111) interface between LaAlO\(_3\) and SrTiO\(_3\) metallic. The change in interface topology becomes evident in the Fermi surface of the buried 2DES which is probed by soft x-ray photoemission. Based on the asymmetry in the Fermi surface, we estimate the extension of the conductive layer in the (111)-oriented LaAlO\(_3\)/SrTiO\(_3\) heterostructure. The spectral function measured furthermore identifies the charge carriers at the interface as large polarons.}, subject = {{\"U}bergangsmetalloxide}, language = {en} } @unpublished{MaghamiScheitlHoebartner2019, author = {Maghami, Mohammad Ghaem and Scheitl, Carolin P. M. and H{\"o}bartner, Claudia}, title = {Direct in vitro selection of trans-acting ribozymes for posttranscriptional, site-specific, and covalent fluorescent labeling of RNA}, series = {Journal of the American Chemical Society}, journal = {Journal of the American Chemical Society}, doi = {10.1021/jacs.9b10531}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-192333}, year = {2019}, abstract = {General and efficient tools for site-specific fluorescent or bioorthogonal labeling of RNA are in high demand. Here, we report direct in vitro selection, characterization, and application of versatile trans-acting 2'-5' adenylyl transferase ribozymes for covalent and site-specific RNA labeling. The design of our partially structured RNA pool allowed for in vitro evolution of ribozymes that modify a predetermined nucleotide in cis (i.e. intramolecular reaction), and were then easily engineered for applications in trans (i.e. in an intermolecular setup). The resulting ribozymes are readily designed for specific target sites in small and large RNAs and accept a wide variety of N6-modified ATP analogues as small molecule substrates. The most efficient new ribozyme (FH14) shows excellent specificity towards its target sequence also in the context of total cellular RNA.}, language = {en} } @phdthesis{Knapp2019, author = {Knapp, Alexander Gerhard}, title = {Resonant Spin Flip Raman-Spectroscopy of Electrons and Manganese-Ions in the n-doped Diluted Magnetic Semiconductor (Zn,Mn)Se:Cl}, doi = {10.25972/OPUS-18609}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-186099}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {Main focus of the present dissertation was to gain new insight about the interaction between magnetic ions and the conduction band of diluted magnetic semiconductors. This interaction in magnetic semiconductors with carrier concentrations near the metal-insulator transition (MIT) in an external magnetic field is barely researched. Hence, n-doped Zn1-xMnxSe:Cl samples were studied. Resonant Raman spectroscopy was employed at an external magnetic field between 1T and 7T and a temperature of 1.5K. The resulting magnetization of the material amplifies the splitting of states with opposite spins both in the valence and the conduction band. This is known as the "giant-Zeeman-effect". In this thesis, the resonance of the electron spin flip process, i.e. the enhancement of the signal depending on the excitation energy, was used as an indicator to determine the density of states of the charge carriers. The measured resonance profiles of each sample showed a structure, which consist of two partially overlapping Gaussian curves. The analysis of the Gaussian curves revealed that their respective maxima are separated independent of the magnetic field strenght by about 5 meV, which matches the binding energy of the donor bound exciton (D0, X). A widening of the full width at half maximum of the resonance profile was observed with increasing magnetic field. A detailed analysis of this behavior showed that the donor bound exciton spin flip resonance primarily accounts for the widening for all samples with doping concentrations below the metal insulator transition. A model was proposed for the interpretation of this observation. This is based on the fundamental assumptions of a spatially random distribution of the manganese ions on the group-II sublattice of the ZnSe crystal and the finite extension of the excitons. Thus, each exciton covers an individual quantity of manganese ions, which manifest as a local manganese concentration. This local manganese concentration is normally distributed for a set of excitons and hence, the evaluation of the distribution allows the determination of exciton radii Two trends were identified for the (D0, X) radii. The radius of the bound exciton decreases with increasing carrier concentration as well as with increasing manganese concentration. The determination of the (D0, X) radii by the use of resonant spin flip Raman spectroscopy and also the observation of the behavior of the (D0, X) radius depending on the carrier concentration, was achieved for the first time. For all samples with carrier concentrations below the metal-insulator transition, the obtained (X0) radii are up to a factor of 5.9 larger than the respective (D0, X) radii. This observation is explained by the unbound character of the (X0). For the first time, such an observation could be made by Raman spectroscopy.Beside the resonance studies, the shape of the Raman signal of the electron spin flip was analyzed. Thereby an obvious asymmetry of the signal, with a clear flank to lower Raman shifts, was observed. This asymmetry is most pronounced, when the spin flip process is excited near the (D0, X) resonance. To explain this observation, a theoretical model was introduced in this thesis. Based on the asymmetry of the resonantly excited spin flip signal, it was possible to estimate the (D0, X) radii, too. At external magnetic fields between 1.25T and 7T, the obtained radii lie between 2.38nm and 2.75nm. Additionally, the asymmetry of the electron spin flip signal was observed at different excitation energies. Here it is striking that the asymmetry vanishes with increasing excitation energy. At the highest excitation energy, where the electron spin flip was still detectable, the estimated radius of the exciton is 3.92nm. Beside the observations on the electron spin flip, the resonance behavior of the spin flip processes in the d-shell of the incorporated Mn ions was studied in this thesis. This was performed for the direct Mn spin flip process as well as for the sum process of the longitudinal optical phonon with the Mn spin flip. For the Stokes and anti-Stokes direct spin flip process and for the Stokes sum process, each the resonance curve is described by considering only one resonance mechanism. In contrast, resonance for the sum process in which an anti-Stokes Mn spin flip is involved, consists of two partially overlapping resonances due to different mechanisms. A detailed analysis of this resonance profile showed that for (Zn,Mn)Se at the chosen experimental parameters, an incoming and outgoing resonance can be achieved, separated by a few meV. Hereby, at a specific excitation energy range and a high excitation power, it was possible to achieve an inversion of the anti-Stokes to Stokes intensity, because only the anti-Stokes Mn spin flip process was enhanced resonantly.}, subject = {Raman-Spektroskopie}, language = {en} } @phdthesis{Frank2019, author = {Frank, Erik Thomas}, title = {Behavioral adaptations in the foraging behaviour of \(Megaponera\) \(analis\)}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-156544}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {An efficient foraging strategy is one of the most important traits for the fitness of animals. The theory of optimal foraging tries to predict foraging behaviour through the overarching question: how animals should forage so as to minimize costs while maximizing profits? Social insects, having occupied nearly every natural niche through widely different strategies, offer themselves as an ideal group to study how well optimal foraging theory can explain their behaviour and success. Specialization often leads to unique adaptations in morphology and behaviour. I therefore decided to investigate the behaviour of Megaponera analis. This ponerine ant species is specialized on hunting only termites of the subfamily Macrotermitinae at their foraging sites. Their foraging behaviour is regulated by a handful of individual scouts (10-20) that search for termite foraging sites before returning to the nest to recruit a large number of nestmates (200-500 ants). These ants then follow the scout in a column formation to the termites and after the hunt return together to the nest, these raids occur two to five times per day. Predators of highly defensive prey likely develop cost reducing adaptations. The evolutionary arms race between termites and ants led to various defensive mechanisms in termites, e.g. a caste specialized in fighting predators. As M. analis incurs high injury/mortality risks when preying on termites, some risk mitigating adaptations have evolved. I show that a unique rescue behaviour in M. analis, consisting of injured nestmates being carried back to the nest, reduces combat mortality. These injured ants "call for help" with pheromones present in their mandibular gland reservoirs. A model accounting for this rescue behaviour identifies the drivers favouring its evolution and estimates that rescuing allows for maintaining a 29\% larger colony size. Heavily injured ants that lost too many legs during the fight on the other hand are not helped. Interestingly, this was regulated not by the helper but by the uncooperativeness of the injured ant. I further observed treatment of the injury by nestmates inside the nest through intense allogrooming directly at the wound. Lack of treatment increased mortality from 10\% to 80\% within 24 hours, with the cause of death most likely being infections. Collective decision-making is one of the main mechanisms in social insects through which foraging is regulated. However, individual decision-making can also play an important role, depending on the type of foraging behaviour. In M. analis only a handful of individuals (the scouts) hold all the valuable information about foraging sites. I therefore looked at predictions made by optimal foraging theory to better understand the interplay between collective and individual decision-making in this obligate group-raiding predator. I found a clear positive relation between raid size and termite abundance at the foraging site. Furthermore, selectivity of the food source increased with distance. The confirmation of optimal foraging theory suggests that individual scouts must be the main driver behind raid size, choice and raiding behaviour. Therefore most central place foraging behaviours in M. analis were not achieved by collective decisions but rather by individual decisions of scout ants. Thus, 1\% of the colony (10-20 scouts) decided the fate and foraging efficiency of the remaining 99\%. Division of labour is one of the main reasons for the success of social insects. Worker polymorphism, age polyethism and work division in more primitive ants, like the ponerines, remain mostly unexplored though. Since M. analis specializes on a defensive prey, adaptations to reduce their foraging costs can be expected. I found that the work division, task allocation and column-formation during the hunt were much more sophisticated than was previously thought. The column-formation was remarkably stable, with the same ants resuming similar positions in subsequent raids and front ants even returning to their positions if displaced in the same raid. Most of the raid tasks were not executed by predetermined members of the raid but were filled out as need arose during the hunt, with a clear preference for larger ants to conduct most tasks. I show that specialization towards a highly defensive prey can lead to very unique adaptations in the foraging behaviour of a species. I explored experimentally the adaptive value of rescue behaviour focused on injured nestmates in social insects. This was not only limited to selective rescuing of lightly injured individuals by carrying them back (thus reducing predation risk) but moreover includes a differentiated treatment inside the nest. These observations will help to improve our understanding of the evolution of rescue behaviour in animals. I further show that most optimal foraging predictions are fulfilled and regulated by a handful of individuals in M. analis. Lastly, I propose that the continuous allometric size polymorphism in M. analis allows for greater flexibility in task allocation, necessary due to the unpredictability of task requirements in an irregular system such as hunting termites in groups. All of my observations help to further understand how a group-hunting predator should forage so as to minimize costs while maximizing profits.}, subject = {Stechameisen}, language = {en} } @phdthesis{Franke2019, author = {Franke, Christian}, title = {Advancing Single-Molecule Localization Microscopy: Quantitative Analyses and Photometric Three-Dimensional Imaging}, doi = {10.25972/OPUS-15635}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-156355}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {Since its first experimental implementation in 2005, single-molecule localization microscopy (SMLM) emerged as a versatile and powerful imaging tool for biological structures with nanometer resolution. By now, SMLM has compiled an extensive track-record of novel insights in sub- and inter- cellular organization.\\ Moreover, since all SMLM techniques rely on the analysis of emission patterns from isolated fluorophores, they inherently allocate molecular information \$per\$ \$definitionem\$.\\ Consequently, SMLM transitioned from its origin as pure high-resolution imaging instrument towards quantitative microscopy, where the key information medium is no longer the highly resolved image itself, but the raw localization data set.\\ The work presented in this thesis is part of the ongoing effort to translate those \$per\$ \$se\$ molecular information gained by SMLM imaging to insights into the structural organization of the targeted protein or even beyond. Although largely consistent in their objectives, the general distinction between global or segmentation clustering approaches on one side and particle averaging or meta-analyses techniques on the other is usually made.\\ During the course of my thesis, I designed, implemented and employed numerous quantitative approaches with varying degrees of complexity and fields of application.\\ \\ In my first major project, I analyzed the localization distribution of the integral protein gp210 of the nuclear pore complex (NPC) with an iterative \textit{k}-means algorithm. Relating the distinct localization statistics of separated gp210 domains to isolated fluorescent signals led, among others, to the conclusion that the anchoring ring of the NPC consists of 8 homo-dimers of gp210.\\ This is of particular significance, both because it answered a decades long standing question about the nature of the gp210 ring and it showcased the possibility to gain structural information well beyond the resolution capabilities of SMLM by crafty quantification approaches.\\ \\ The second major project reported comprises an extensive study of the synaptonemal complex (SNC) and linked cohesin complexes. Here, I employed a multi-level meta-analysis of the localization sets of various SNC proteins to facilitate the compilation of a novel model of the molecular organization of the major SNC components with so far unmatched extend and detail with isotropic three-dimensional resolution.\\ In a second venture, the two murine cohesin components SMC3 and STAG3 connected to the SNC were analyzed. Applying an adapted algorithm, considering the disperse nature of cohesins, led to the realization that there is an apparent polarization of those cohesin complexes in the SNC, as well as a possible sub-structure of STAG3 beyond the resolution capabilities of SMLM.\\ \\ Other minor projects connected to localization quantification included the study of plasma membrane glycans regarding their overall localization distribution and particular homogeneity as well as the investigation of two flotillin proteins in the membrane of bacteria, forming clusters of distinct shapes and sizes.\\ \\ Finally, a novel approach to three-dimensional SMLM is presented, employing the precise quantification of single molecule emitter intensities. This method, named TRABI, relies on the principles of aperture photometry which were improved for SMLM.\\ With TRABI it was shown, that widely used Gaussian fitting based localization software underestimates photon counts significantly. This mismatch was utilized as a \$z\$-dependent parameter, enabling the conversion of 2D SMLM data to a virtual 3D space. Furthermore it was demonstrated, that TRABI can be combined beneficially with a multi-plane detection scheme, resulting in superior performance regarding axial localization precision and resolution.\\ Additionally, TRABI has been subsequently employed to photometrically characterize a novel dye for SMLM, revealing superior photo-physical properties at the single-molecule level.\\ Following the conclusion of this thesis, the TRABI method and its applications remains subject of diverse ongoing research.}, subject = {Einzelmolek{\"u}lmikroskopie}, language = {en} } @phdthesis{Reggane2019, author = {Reggane, Maude}, title = {Lowering lattice forces of crystalline bases}, doi = {10.25972/OPUS-16380}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-163803}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {The number of active pharmaceutical ingredients (APIs) exhibiting a low solubility in aqueous media or a slow dissolution rate kept rising over the past years urging formulation scientists to explore new ways to tackle poor solubility and to enable oral absorption from such compounds. Bioavailability of poorly water-soluble compounds can be improved by increasing the dissolution rate and/or by increasing the gastro intestinal concentration through transient supersaturation. The dissolution rate of the API can be typically modified by the choice of the physical form, the polymorphic form, the powder surface area, and the local pH, while a transient supersaturation can be extended mainly by nucleation or crystallization inhibiting effects. In the present thesis, three strategies were explored to tailor the dissolution rate, the supersaturation and the hydrotropic solubilization of APIs, weak bases, respectively. The first part of this thesis followed a bioinspired approach to extend the kinetic solubility of salts and co-crystals. API salts and co-crystals are high energy forms that can generate supersaturated solutions with respect to any more stable form, typically the most stable API form in physiological environment. The transient kinetic stabilization of supersaturated states, also termed "parachute effect", is considered to improve bioavailability and is one aspect of the formulation that can be tailored. Inspiration from plants, which store high concentrations of aromatic bases in their vacuoles via complexation with polyphenols, sparked the evaluation to use hydroxybenzoic acid derivatives for salt or co-crystal engineering. Imatinib was chosen as the model compound for this investigation as its aromaticity and flat molecular architecture could favor interactions with hydroxybenzoic acid derivatives. One 1:1 Imatinib syringate co-crystal (I-SYA (1:1)) and one 1:2 Imatinib syringate co-crystal salt (I-SYA (1:2)) were obtained. Their dissolution assays in simulated intestinal fluid (SIF; a 50 mM phosphate buffer of pH 6.8) revealed that they formed stable solutions for several hours and days, respectively, in contrast to the marketed Imatinib mesylate salt (approx. 1h). This kinetic stability in solution was linked to the nucleation inhibition of the less soluble Imatinib hydrate by syringic acid (SYA). In solution 1H-NMR studies evidenced the aggregation of Imatinib and SYA. The amphiphilic nature of both Imatinib and SYA is considered to drive their association in solution, additionally, multiple intermolecular interactions such as hydrogen bonds and π-π stacking are likely to contribute. The association in solution enabled a phase of extended supersaturation, i.e., a parachute against desupersaturation, while no negative impact of aggregation on the permeability of both Imatinib and SYA was observed. A prerequisite to reach supersaturation is a rapid dissolution and release of the API from the formulation. Accordingly, the second and third part of this thesis is focused on the so-called "spring effect" of amorphous solid dispersions (ASDs). The addition of a hydrotropic agent, meaning a molecule that can solubilize poorly water-soluble APIs in aqueous solutions (well-known examples of hydrotropes are benzoic acid and nicotinamide) into an amorphous Ciprofloxacin-polymer matrix led to ternary systems with a significantly faster release and higher concentration of the API in SIF as compared to binary ASDs consisting of Ciprofloxacin (CPX) and polymer only. The stronger spring could be rationalized by an improved wetting of the ASD, or/and by a hydrotropic solubilization effect, although these hypotheses need further investigation. Marked differences in the dissolution profiles of binary ASDs were observed in biorelevant fasted simulated intestinal fluid (FaSSIF; a medium containing Na taurocholate (3 mM) and lecithin (0.75 mM) at pH 6.5) as compared to SIF. In FaSSIF, API release from binary polymeric ASDs was largely improved, and the duration of supersaturation was extended. This suggests that the bile salt Na taurocholate and lecithin present in FaSSIF do improve both dissolution rate and supersaturation of ASDs, the two pillars of ASDs as oral enabling formulations. Indeed, bile salts are endogenous surfactants which, together with phospholipids, play an important role in the wetting, solubilization, and absorption of lipophilic compounds. The aim of the third part of the present thesis was to study ASDs as formulation principles reducing the strong positive food effect of Compound A. By inclusion of Na taurocholate (NaTC) within the matrix of polymeric ASDs a significant improvement of the dissolution rate and the kinetic solubility in SIF were achieved. Transient supersaturated states of up to four orders of magnitude over the equilibrium solubility were obtained. Two ASDs were selected for further in vivo evaluation in dog. The first was a NaTC/Eudragit E based ASD meant to dissolve and release Compound A in the acidic environment of the stomach, where its solubility is the highest. The second relied on the release of Compound A in the neutral environment of the duodenum and jejunum by using an enterically dissolving polymer, HPMC-P. Releasing the API at the site of its putative absorption was an attempt to control supersaturation levels in the duodenum and to prevent portioning and thus dilution effects during transfer from the stomach. In fasted dogs, exposure from the NaTC/HPMC-P ASD was close to that of the reference Compound A formulation under fed conditions, which suggests an improved dissolution rate and kinetic solubility under fasted conditions (historical data). The exposure from the NaTC/Eudragit E ASD was twice as low as from the NaTC/HPMC-P ASD, and also lower compared to Compound A reference formulation, whereas in vitro the parachute effect of the NaTC/Eudragit E ASD was largely superior to that of the NaTC/HPMC-P ASD. A difference in the extend of the parachute could be related to differences in the thermodynamic activity of dissolved molecules from the two ASDs. Indeed, the high instability of the NaTC/HPMC-P ASD could stem from a high thermodynamic activity driving diffusion through membranes, whereas less instable solutions of NaTC/Eudragit E could indicate solubilization effects which often translate into a lower flux through the biological membrane. Additionally, the pH of the environment where dissolution takes place might be an important factor for absorption, and could also account for the difference in exposure from the two ASDs. The aim of this thesis was to explore how the intimate environment of weak, poorly soluble bases could be functionalized to improve dissolution rate and kinetic solubility. The investigations highlighted that the performance of enabling oral delivery formulations of weak bases in aqueous media can be enhanced at different levels. At one end initial dissolution rate of ASDs can be tailored by introducing hydrotropes or/and bile salts within the polymeric matrix of ASDs. Bile salts, when combined with appropriate polymers, had also a precipitation inhibition effect enabling the maintenance of supersaturation for a bio-relevant period of time. These results set the ground for further investigations to comprehend specific interactions between bile salts and APIs, and potentially polymers at the molecular level. It will be interesting to explore how such complex systems can be exploited in the formulation design of poorly water-soluble APIs. In addition, it was observed that the duration of supersaturation generated by salts/co-crystals can be extended by the pertinent selection of counterions or coformers. The in vivo relevance of these tunings remains to be evaluated, as translation from closed, in vitro systems to the highly dynamic gastrointestinal environment is not straightforward. A better understanding of the contribution of each kinetic stage (dissolution, supersaturation, and precipitation) and their interplay with physiological factors impacting absorption is essential to facilitate the design of formulations with improved pharmacokinetics.}, subject = {Kokristallisation}, language = {en} } @phdthesis{Kruber2019, author = {Kruber, Philip}, title = {Functional analysis of DROSHA and SIX1 mutations in kidney development and Wilms tumor}, doi = {10.25972/OPUS-16141}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-161418}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {Wilms tumor (WT) is the most common kidney cancer in childhood. It is a genetically heterogeneous tumor and several genetic alterations have been identified in WT patients. Recurrent mutations were found in the homeo-domain of SIX1 and SIX2 in high proliferative tumors (18.1\% of the blastemal-type tumors) as well as in the microprocessor genes DROSHA and DGCR8 (18.2\% of the blastemal-type tumors), indicating a critical role of the SIX-SALL pathway and aberrant miRNA processing in WT formation. Underlined by the fact that a significant overlap between mutations in DROSHA and SIX1 was found, indicating a synergistic effect. To characterize the in vivo role of DROSHA and SIX mutations during kidney development and their oncogenic potential, I analyzed mouse lines with either a targeted deletion of Drosha or an inducible expression of human DROSHA or SIX1 carrying a tumor-specific E1147K or Q177R mutation, respectively. The DROSHA mutation E1147K was predicted to act in a dominant negative manner. Six2-cre mediated deletion of Drosha in nephron progenitors led to a lethal phenotype with apoptotic loss of progenitor cells and early termination of nephrogenesis. Mosaic deletions via Wt1-creERT2 resulted in a milder phenotype with viable offspring that developed proteinuria after 2-4 weeks, but no evidence of tumor formation. Activation of the DROSHA-E1147K transgene via Six2-cre, on the other hand, induced a more severe phenotype with apoptosis of progenitor cells, proteinuria and glomerular sclerosis. The severely growth-retarded mice died within the first two months. This strong phenotype was consistent with the predicted dominant-negative effect of DROSHA-E1147K. Analysis of the SIX1-Q177R mutation suggested that the mutation leads to a shift in DNA binding specificity instead of a complete loss of DNA binding. This may end up in subtle changes of the gene regulatory capacity of SIX1. Six2-cre mediated activation of SIX1-Q177R lead to a viable phenotype with no alterations or shortened life span. Yet a global activation of SIX1-Q177R mediated by Zp3-cre resulted in bilateral hydronephrosis and juvenile death of the mice. To mimic the synergistic effect of DROSHA and SIX1 mutations, I generated compound mutants in two combinations: A homozygous deletion of Drosha combined with an activation of SIX1-Q177R and a compound mutant with activation of DROSHA-E1147K and SIX1-Q177R. Each mouse model variant displayed new phenotypical alterations. Mice with Six2-cre mediated homozygous deletion of Drosha and activation of SIX1-Q177R were not viable, yet heterozygous deletion of Drosha and activation of SIX1-Q177R led to hydronephrosis, proteinuria and an early death around stage P28. Combined activation of DROSHA-E1147K and SIX1-Q177R under Six2-cre resulted in proteinuria, glomerulosclerosis and lesions inside the kidney. These mice also suffered from juvenile death. Both mouse models could confirm the predicted synergistic effect. While these results underscore the importance of a viable self-renewing progenitor pool for kidney development, there was no evidence of tumor formation. This suggests that either additional alterations in mitogenic or antiapoptotic pathways are needed for malignant transformation, or premature loss of a susceptible target cell population and early lethality prevent WT formation.}, subject = {Nephroblastom}, language = {en} } @phdthesis{Pahlavan2019, author = {Pahlavan, Pirasteh}, title = {Integrated Systems Biology Analysis; Exemplified on Potyvirus and Geminivirus interaction with \(Nicotiana\) \(benthamiana\)}, doi = {10.25972/OPUS-15341}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-153412}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {Viral infections induce a significant impact on various functional categories of biological processes in the host. The understanding of this complex modification of the infected host immune system requires a global and detailed overview on the infection process. Therefore it is essential to apply a powerful approach which identifies the involved components conferring the capacity to recognize and respond to specific pathogens, which in general are defeated in so-called compatible virus-plant infections. Comparative and integrated systems biology of plant-virus interaction progression may open a novel framework for a systemic picture on the modulation of plant immunity during different infections and understanding pathogenesis mechanisms. In this thesis these approaches were applied to study plant-virus infections during two main viral pathogens of cassava: Cassava brown streak virus and African cassava mosaic virus. Here, the infection process was reconstructed by a combination of omics data-based analyses and metabolic network modelling, to understand the major metabolic pathways and elements underlying viral infection responses in different time series, as well as the flux activity distribution to gain more insights into the metabolic flow and mechanism of regulation; this resulted in simultaneous investigations on a broad spectrum of changes in several levels including the gene expression, primary metabolites, and enzymatic flux associated with the characteristic disease development process induced in Nicotiana benthamiana plants due to infection with CBSV or ACMV. Firstly, the transcriptome dynamics of the infected plant was analysed by using mRNA-sequencing, in order to investigate the differential expression profile according the symptom developmental stage. The spreading pattern and different levels of biological functions of these genes were analysed associated with the infection stage and virus entity. A next step was the Real-Time expression modification of selected key pathway genes followed by their linear regression model. Subsequently, the functional loss of regulatory genes which trigger R-mediated resistance was observed. Substantial differences were observed between infected mutants/transgenic lines and wild-types and characterized in detail. In addition, we detected a massive localized accumulation of ROS and quantified the scavenging genes expression in the infected wild-type plants relative to mock infected controls. Moreover, we found coordinated regulated metabolites in response to viral infection measured by using LC-MS/MS and HPLC-UV-MS. This includes the profile of the phytohormones, carbohydrates, amino acids, and phenolics at different time points of infection with the RNA and DNA viruses. This was influenced by differentially regulated enzymatic activities along the salicylate, jasmonate, and chorismate biosynthesis, glycolysis, tricarboxylic acid cycle, and pentose phosphate pathways, as well as photosynthesis, photorespiration, transporting, amino acid and fatty acid biosynthesis. We calculated the flux redistribution considering a gradient of modulation for enzymes along different infection stages, ranging from pre-symptoms towards infection stability. Collectively, our reverse-engineering study consisting of the generation of experimental data and modelling supports the general insight with comparative and integrated systems biology into a model plant-virus interaction system. We refine the cross talk between transcriptome modification, metabolites modulation and enzymatic flux redistribution during compatible infection progression. The results highlight the global alteration in a susceptible host, correlation between symptoms severity and the alteration level. In addition we identify the detailed corresponding general and specific responses to RNA and DNA viruses at different stages of infection. To sum up, all the findings in this study strengthen the necessity of considering the timing of treatment, which greatly affects plant defence against viral infection, and might result in more efficient or combined targeting of a wider range of plant pathogens.}, language = {en} } @phdthesis{Simon2019, author = {Simon, Katja}, title = {Identifying the role of Myb-MuvB in gene expression and proliferation of lung cancer cells}, doi = {10.25972/OPUS-16181}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-161814}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {The evolutionary conserved Myb-MuvB (MMB) multiprotein complex is a transcriptional master regulator of mitotic gene expression. The MMB subunits B-MYB, FOXM1 as well as target genes of MMB are often overexpressed in different cancer types. Elevated expression of these genes correlates with an advanced tumor state and a poor prognosis for patients. Furthermore, it has been reported that pathways, which are involved in regulating the mitotic machinery are attractive for a potential treatment of cancers harbouring Ras mutations (Luo et al., 2009). This suggest that the MMB complex could be required for tumorigenesis by mediating overactivity of mitotic genes and that the MMB could be a useful target for lung cancer treatment. However, although MMB has been characterized biochemically, the contribution of MMB to tumorigenesis is largely unknown in particular in vivo. In this thesis, it was demonstrated that the MMB complex is required for lung tumorigenesis in vivo in a mouse model of non small cell lung cancer. Elevated levels of B-MYB, NUSAP1 or CENPF in advanced tumors as opposed to low levels of these proteins levels in grade 1 or 2 tumors support the possible contribution of MMB to lung tumorigenesis and the oncogenic potential of B-MYB.The tumor growth promoting function of B-MYB was illustrated by a lower fraction of KI-67 positive cells in vivo and a significantly high impairment in proliferation after loss of B-Myb in vitro. Defects in cytokinesis and an abnormal cell cycle profile after loss of B-Myb underscore the impact of B-MYB on proliferation of lung cancer cell lines. The incomplete recombination of B-Myb in murine lung tumors and in the tumor derived primary cell lines illustrates the selection pressure against the complete loss of B-Myb and further demonstrats that B-Myb is a tumor-essential gene. In the last part of this thesis, the contribution of MMB to the proliferation of human lung cancer cells was demonstrated by the RNAi-mediated depletion of B-Myb. Detection of elevated B-MYB levels in human adenocarcinoma and a reduced proliferation, cytokinesis defects and abnormal cell cycle profile after loss of B-MYB in human lung cancer cell lines underlines the potential of B-MYB to serve as a clinical marker.}, subject = {Lungenkrebs}, language = {en} } @phdthesis{Awad2019, author = {Awad, Eman Da'as}, title = {Modulation of insulin-induced genotoxicity in vitro and genomic damage in gestational diabetes}, doi = {10.25972/OPUS-16186}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-161866}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {Diabetes mellitus is a global health problem, where the risk of diabetes increases rapidly due to the lifestyle changes. Patients with type II diabetes have many complications with increased risk of morbidity and mortality. High levels of insulin may lead to DNA oxidation and damage. Several studies proposed that hyperinsulinemia may be an important risk factor for various types of cancer. To investigate insulin signaling pathway inducing oxidative stress and genomic damage, pharmaceutical and natural compounds which can interfere with the insulin pathway including PI3K inhibitors, resveratrol, lovastatin, and RAD-001 were selected due to their beneficial effects against metabolic disorder. Thus, the anti-genotoxic potential of these compounds regarding insulin-mediated oxidative stress were investigated in normal rat kidney cells in vitro. Our compounds showed protective effect against genotoxic damage and significantly decreased reactive oxygen specious after treatment of cells with insulin with different mechanisms of protection between the compounds. Thus, these compounds may be attractive candidates for future support of diabetes mellitus therapy. Next, we explored the link between gestational diabetes mellitus and genomic damage in cells derived from human blood. Moreover, we investigated the influence of estradiol, progesterone, adrenaline and triiodothyronine on insulin-induced genomic damage in vitro. First, we studied the effect of these hormones in human promyelocytic leukemia cells and next ex vivo with non-stimulated and stimulated peripheral blood mononuclear cells. In parallel, we also measured the basal genomic damage using three conditions (whole blood, non-stimulated and stimulated peripheral blood mononuclear cells) in a small patient study including non-pregnant controls with/without hormonal contraceptives, with a subgroup of obese women, pregnant women, and gestational diabetes affected women. A second-time point after delivery was also applied for analysis of the blood samples. Our results showed that GDM subjects and obese individuals exhibited higher basal DNA damage compared to lower weight nonpregnant or healthy pregnant women in stimulated peripheral blood mononuclear cells in both comet and micronucleus assays. On the other hand, the DNA damage in GDM women had decreased at two months after birth. Moreover, the applied hormones also showed an influence in vitro in the enhancement of the genomic damage in cells of the control and pregnant groups but this damage did not exceed the damage which existed in obese and gestational diabetes mellitus patients with high level of genomic damage. In conclusion, insulin can induce genomic damage in cultured cells, which can be modulated by pharmaceutical and naturals substances. This may be for future use in the protection of diabetic patients, who suffer from hyperinsulinemia during certain disease stages. A particular form of diabetes, GDM, was shown to lead to elevated DNA damage in affected women, which is reduced again after delivery. Cells of affected women do not show an enhanced, but rather a reduced sensitivity for further DNA damage induction by hormonal treatment in vitro. A potential reason may be an existence of a maximally inducible damage by hormonal influences.}, subject = {Gestationsdiabetes}, language = {en} } @phdthesis{Wermser2019, author = {Wermser, Charlotte}, title = {Morphology, regulation and interstrain interactions in a new macrocolony biofilm model of the human pathogen \(Staphylococcus\) \(aureus\)}, doi = {10.25972/OPUS-16593}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-165931}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {The role of multicellularity as the predominant microbial lifestyle has been affirmed by studies on the genetic regulation of biofilms and the conditions driving their formation. Biofilms are of prime importance for the pathology of chronic infections of the opportunistic human pathogen Staphylococcus aureus. The recent development of a macrocolony biofilm model in S. aureus opened new opportunities to study evolution and physiological specialization in biofilm communities in this organism. In the macrocolony biofilm model, bacteria form complex aggregates with a sophisticated spatial organization on the micro- and macroscale. The central positive and negative regulators of this organization in S. aureus are the alternative sigma factor σB and the quorum sensing system Agr, respectively. Nevertheless, nothing is known on additional factors controlling the macrocolony morphogenesis. In this work, the genome of S. aureus was screened for novel factors that are required for the development of the macrocolony architecture. A central role for basic metabolic pathways was demonstrated in this context as the macrocolony architecture was strongly altered by the disruption of nucleotide and carbohydrate synthesis. Environmental signals further modulate macrocolony morphogenesis as illustrated by the role of an oxygen-sensitive gene regulator, which is required for the formation of complex surface structures. A further application of the macrocolony biofilm model was demonstrated in the study of interstrain interactions. The integrity of macrocolony communities was macroscopically visibly disturbed by competitive interactions between clinical isolates of S. aureus. The results of this work contribute to the characterization of the macrocolony biofilm model and improve our understanding of developmental processes relevant in staphylococcal infections. The identification of anti-biofilm effects exercised through competitive interactions could lead to the design of novel antimicrobial strategies targeting multicellular bacterial communities.}, subject = {Staphylococcus aureus}, language = {en} } @phdthesis{Uri2019, author = {Uri, Anna}, title = {Differential requirement for CD28 co-stimulation on donor T cell subsets in mouse models of acute graft versus host disease and graft versus tumour effect}, doi = {10.25972/OPUS-16586}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-165863}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {Hematopoietic stem cell transplantation is a curative therapy for malignant diseases of the haematopoietic system. The patients first undergo chemotherapy or irradiation therapy which depletes the majority of tumour cells before they receive the transplant, consisting of haematopoietic stem cells and mature T cells from a healthy donor. The donor T cells kill malignant cells that have not been eliminated by the conditioning therapy (graft versus leukaemia effect, GvL), and, therefore, are crucially required to prevent relapse of the tumour. However, the donor T cells may also severely damage the patient's organs causing acute graft versus host disease (aGvHD). In mice, aGvHD can be prevented by interfering with the co-stimulatory CD28 signal on donor T cells. However, experimental models using conventional CD28 knockout mice as T cell donors or αCD28 antibodies have some disadvantages, i.e. impaired T cell development in the thymus of CD28 knockout mice and systemic CD28 blockade with αCD28 antibodies. Thus, it remains unclear how CD28 co-stimulation on different donor T cell subsets contributes to the GvL effect and aGvHD, respectively. We developed mouse models of aGvHD and the GvL effect that allowed to selectively delete CD28 on certain donor T cell populations or on all donor T cells. CD4+ conventional T cells (Tconv cells), regulatory T cells (Treg cells) or CD8+ T cells were isolated from either Tamoxifen-inducible CD28 knockout (iCD28KO) mice or their wild type (wt) littermates. Allogeneic recipient mice were then transplanted with T cell depleted bone marrow cells and different combinations of iCD28KO and wt T cell subsets. Tamoxifen treatment of the recipients caused irreversible CD28 deletion on the iCD28KO donor T cell population. In order to study the GvL response, BCL-1 tumour cells were injected into the mice shortly before transfer of the T cells. CD4+ Tconv mediated aGvHD was efficiently inhibited when wt Treg cells were co-transplanted. In contrast, after selective CD28 deletion on donor Treg cells, the mice developed a late and lethal flare of aGvHD, i.e. late-onset aGvHD. This was associated with a decline in iCD28KO Treg cell numbers around day 20 after transplantation. CD28 ablation on either donor CD4+ Tconv cells or CD8+ T cells reduced but did not abrogate aGvHD. Moreover, iCD28KO and wt CD8+ T cells were equally capable of killing allogeneic target cells in vivo and in vitro. Due to this sufficient anti-tumour activity of iCD28KO CD8+ T cells, they had a therapeutic effect in our GvL model and 25\% of the mice survived until the end of the experiment (day 120) without any sign of the malignant disease. Similarly, CD28 deletion on all donor T cells induced long-term survival. This was not the case when all donor T cells were isolated from wt donor mice. In contrast to the beneficial outcome after CD28 deletion on all donor T cells or only CD8+ T cells, selective CD28 deletion on donor CD4+ Tconv cells completely abrogated the GvL effect due to insufficient CD4+ T cell help from iCD28KO CD4+ Tconv cells. This study demonstrates that therapeutic inhibition of the co-stimulatory CD28 signal in either all donor T cells or only in CD8+ T cells might protect patients from aGvHD without increasing the risk of relapse of the underlying disease. Moreover, deletion of CD28 on donor Treg cells constitutes a mouse model of late-onset aGvHD which can be a useful tool in aGvHD research.}, subject = {Antigen CD28}, language = {en} } @phdthesis{Gerner2019, author = {Gerner, Frank}, title = {Functional analysis of polarization and podosome formation of murine and human megakaryocytes}, doi = {10.25972/OPUS-16050}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-160508}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {In mammals, blood platelets are produced by large bone marrow (BM) precursor cells, megakaryocytes (MK) that extend polarized cell protrusions (proplateles) into BM sinusoids. Proplatelet formation (PPF) requires substantial cytoskeletal rearrangements that have been shown to involve the formation of podosomes, filamentous actin (F-actin) and integrin-rich structures. However, the exact molecular mechanisms regulating MK podosome formation, polarization and migration within the BM are poorly defined. According to current knowledge obtained from studies with other cell types, these processes are regulated by Rho GTPase proteins like RhoA and Cdc42. In this thesis, polarization and podosome formation were investigated in MKs from genetically modified mice, as well as the cell lines K562 and Meg01 by pharmacological modulation of signaling pathways. The first part of this thesis describes establishment of the basic assays for investigation of MK polarization. Initial data on polarization of the MK-like erythroleukemia cell line K562 revealed first insights into actin and tubulin dynamics of wild type (WT) and RhoA knock-out (RhoA-/-) K562 cells. Phorbol 12-myristate 13-acetate (PMA)-induction of K562 cells led to the expected MK-receptor upregulation but also RhoA depletion and altered polarization patterns. The second part of this thesis focuses on podosome formation of MKs. RhoA is shown to be dispensable for podosome formation. Cdc42 is revealed as an important, but not essential regulator of MK spreading and podosome formation. Studies of signaling pathways of podosome formation reveal the importance of the tyrosine kinases Src, Syk, as well as glycoprotein (GP)VI in MK spreading and podosome formation. This thesis provides novel insights into the mechanisms underlying polarization and podosome formation of MKs and reveals new, important information about cytoskeletal dynamics of MKs and potentially also platelets.}, subject = {Megakaryozyt}, language = {en} } @phdthesis{Potabattula2019, author = {Potabattula, Ramya Sri Krishna}, title = {Male aging and obesity effects on sperm methylome and consequences for the next generation}, doi = {10.25972/OPUS-16548}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-165481}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {Besides a growing tendency for delayed parenthood, sedentary lifestyle coupled with overnutrition has dramatically increased worldwide over the last few decades. Epigenetic mechanisms can help us understand the epidemics and heritability of complex traits like obesity to a significant extent. Majority of the research till now has focused on determining the impact of maternal factors on health and disease risk in the offspring(s). This doctoral thesis is focused on deciphering the potential effects of male aging and obesity on sperm methylome, and consequences/transmission via germline to the next generation. In humans, this was assessed in a unique cohort of ~300 sperm samples, collected after in vitro fertilization/intracytoplasmic sperm injection, as well as in conceived fetal cord blood samples of the children. Furthermore, aging effect on sperm samples derived from a bovine cohort was analyzed. The study identified that human male aging significantly increased the DNA methylation levels of the promoter, the upstream core element, the 18S, and the 28S regions of ribosomal DNA (rDNA) in sperm. Prediction models were developed to anticipate an individual's age based on the methylation status of rDNA regions in his sperm. Hypermethylation of alpha satellite and LINE1 repeats in human sperm was also observed with aging. Epimutations, which are aberrantly methylated CpG sites, were significantly higher in sperm of older males compared to the younger ones. These effects on the male germline had a negative impact on embryo quality of the next generation. Consistent with these results, DNA methylation of rDNA regions, bovine alpha satellite, and testis satellite repeats displayed a significant positive correlation with aging sperm samples within the same individual and across different age-grouped bulls. A positive association between human male obesity/body mass index (BMI) and DNA methylation of the imprinted MEG3 gene and the obesity-related HIF3A gene was detected in sperm. These BMI-induced sperm DNA methylation signatures were transmitted to next generation fetal cord blood (FCB) samples in a gender-specific manner. Males, but not female offsprings exhibited a significant positive correlation between father's BMI and FCB DNA methylation in the two above-mentioned amplicons. Additionally, hypomethylation of IGF2 with increased paternal BMI was observed in female FCB samples. Parental allele-specific in-depth methylation analysis of imprinted genes using next generation sequencing technology also revealed significant correlations between paternal factors like age and BMI, and the corresponding father's allele DNA methylation in FCB samples. Deep bisulphite sequencing of imprinted genes in diploid somatic cord blood cells of offspring detected that the levels of DNA methylation signatures largely depended on the underlying genetic variant, i.e. sequence haplotypes. Allele-specific epimutations were observed in PEG1, PEG5, MEG3, H19, and IGF2 amplicons. For the former three genes, the non-imprinted unmethylated allele displayed more epimutations than the imprinted methylated allele. On the other hand, for the latter two genes, the imprinted allele exhibited higher epimutation rate than that of the non-imprinted allele. In summary, the present study proved that male aging and obesity impacts the DNA methylome of repetitive elements and imprinted genes respectively in sperm, and also has considerable consequences on the next generation. Nevertheless, longitudinal follow-up studies are highly encouraged to elucidate if these effects can influence the risk of developing abnormal phenotype in the offspring during adulthood.}, language = {en} } @phdthesis{Schaper2019, author = {Schaper, Philipp}, title = {Errors in Prospective Memory}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-175217}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {Prospektives Ged{\"a}chtnis beschreibt die F{\"a}higkeit Intentionen zu einem sp{\"a}teren Zeitpunkt als Reaktion auf einen Hinweisreiz auszuf{\"u}hren. Derartige Aufgaben finden sich zahlreich in Alltags- wie auch Arbeitskontexten, waren aber im Gegensatz zum retrospektiven Ged{\"a}chtnis lange Zeit nicht im Fokus der Forschung. Erst die Arbeit von Harris (1984) und insbesondere der Artikel von Einstein and McDaniel (1990) wurden Ausgangspunkte eines sich stetig vergr{\"o}ßernden Forschungsfeldes. Aufbauend auf dieser Forschung werden im Rahmen dieser Dissertationsschrift f{\"u}nf Journal-Artikel pr{\"a}sentiert und verkn{\"u}pft, die das Verst{\"a}ndnis zum prospektiven Ged{\"a}chtnis durch die Betrachtung von m{\"o}glichen Fehlern erweitern. Die erste Studie besch{\"a}ftigt sich mit der Frage ob zus{\"a}tzliche kognitiven Ressourcen ben{\"o}tigt werden um eine Intention zwischen dem Hinweisreiz und ihrer Ausf{\"u}hrung aufrecht zu erhalten. Die Folgerungen von Einstein, McDaniel, Williford, Pagan, and Dismukes (2003), die eine derartige Aufrechterhaltung vorschlugen konnten nicht repliziert werden. In der zweiten Studie konnte gezeigt werden, dass Unterbrechungen zwischen Hinweisreiz und Ausf{\"u}hrung der Intention insbesondere dann negative Folgen zeigen, wenn sie mit einem Kontextwechsel verbunden sind. In den Studien drei bis f{\"u}nf stand das irrt{\"u}mliche Ausf{\"u}hren von beendeten prospektiven Ged{\"a}chtnisaufgaben im Zentrum der Untersuchung. Hier konnte nicht nur gezeigt werden, dass die bisherige Theorie zur Vorhersage derartiger Fehler, die vor allem auf Unterdr{\"u}ckung der Reaktion beruht (Bugg, Scullin, \& Rauvola, 2016), mit den Ergebnissen speziell zu deren Pr{\"u}fung entworfener Experimente nicht zu vereinbaren ist. Dar{\"u}ber hinaus wurde im Rahmen der Untersuchungen eine Modifikation der Theorie ausgearbeitet, die besser geeignet erscheint sowohl bisherige Ergebnisse als auch die hinzugekommenen Experimente vorherzusagen. {\"U}ber alle f{\"u}nf Artikel wird zus{\"a}tzlich verdeutlicht, dass der Moment in dem der Hinweisreiz pr{\"a}sentiert wird eine noch gr{\"o}ßere Rolle zu spielen scheint, als durch bisherige Forschung deutlich geworden ist.}, subject = {Ged{\"a}chtnis}, language = {en} } @unpublished{WernerBundschuhBundschuhetal.2019, author = {Werner, Rudolf A. and Bundschuh, Ralph A. and Bundschuh, Lena and Fanti, Stefano and Javadi, Mehrbod S. and Higuchi, Takahiro and Weich, A. and Pienta, Kenneth J. and Buck, Andreas K. and Pomper, Martin G. and Gorin, Michael A. and Herrmann, Ken and Lapa, Constantin and Rowe, Steven P.}, title = {Novel Structured Reporting Systems for Theranostic Radiotracers}, series = {Journal of Nuclear Medicine}, journal = {Journal of Nuclear Medicine}, issn = {0161-5505}, doi = {10.2967/jnumed.118.223537}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-174629}, year = {2019}, abstract = {Standardized reporting is more and more routinely implemented in clinical practice and such structured reports have a major impact on a large variety of medical fields, e.g. laboratory medicine, pathology, and, recently, radiology. Notably, the field of nuclear medicine is constantly evolving, as novel radiotracers for numerous clinical applications are developed. Thus, framework systems for standardized reporting in this field may a) increase clinical acceptance of new radiotracers, b) allow for inter- and intra-center comparisons for quality assurance, and c) may be used in (global) multi-center studies to ensure comparable results and enable efficient data abstraction. In the last two years, several standardized framework systems for positron emission tomography (PET) radiotracers with potential theranostic applications have been proposed. These include systems for prostate-specific membrane antigen (PSMA)-targeted PET agents for the diagnosis and treatment of prostate cancer (PCa) and somatostatin receptor (SSTR)-targeted PET agents for the diagnosis and treatment of neuroendocrine neoplasias. In the present review, those standardized framework systems for PSMA- and SSTR-targeted PET will be briefly introduced followed by an overview of their advantages and limitations. In addition, potential applications will be defined, approaches to validate such concepts will be proposed, and future perspectives will be discussed.}, subject = {Positronen-Emissions-Tomografie}, language = {en} } @phdthesis{Wahl2019, author = {Wahl, Joachim}, title = {The Use of Ionic Liquids in Capillary Electrophoresis Enantioseparation}, doi = {10.25972/OPUS-17639}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-176397}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {Two chiral chemical molecules being mirror images of each other, also referred to as enantiomers, may have different pharmacokinetic, pharmacodynamic, and toxicological effects. Thus, pharmaceutical manufacturers and authorities are increasingly interested in the approval of enantiopure drugs. However, the isomeric purity and the limits for isomeric impurities have to be specified applying enantioselective analytical methods, such as capillary electrophoresis. The separation of enantiomers in capillary electrophoresis may be improved by the addition of ionic liquids to the background electrolyte. The aim of this work was to investigate the influence of different separation conditions on the enantioseparation of phenethylamines in background electrolytes containing ionic liquids based on tetrabutylammonium cations. Best chiral separations were achieved at acidic pH values using phosphate buffers containing 125 mmol/L tetrabutylammonium based salts. Different reasons explaining enhanced enantioseparations in buffers containing ionic liquids were found. First, due to an improvement of the cyclodextrin solubility, the addition of ionic liquids to the background electrolyte enables the use of higher concentrations of these chiral selector. Furthermore, the adsorption of tetrabutylammonium cations to the negatively charged capillary surface results in a reduction of the electroosmotic flow. Hence, the resulting prolongation of migration times leads to a longer period of time for the separation of temporarily formed diastereomeric analyte cyclodextrin complexes, which yields improved enantioseparation. Additionally, due to a decrease of the adsorption of positively charged phenethylamine analyte molecules to capillary surface silanol groups, the adsorption of ionic liquid cations inhibits peak broadening. A further reason explaining an enhanced enantioseparation by the addition of ionic liquids to the background electrolyte is a competition between tetrabutylammonium cations and analyte enantiomers for the inclusion into cyclodextrin cavities. Furthermore, the influence of different chiral counterions, combined with tetrabutylammonium cations, on the enantioseparation of phenethylamines was investigated. Solely anions based on the basic proteinogenic amino acids L lysine and L arginine yielded chiral separation results superior to those achieved using achiral tetrabutylammonium chloride as background electrolyte additive. Especially the application of tetrabutylammonium L argininate gave very good enantioseparations of all investigated ephedrine derivatives, which might be explained by the ability of L arginine to affect the formation of complexes between analytes and cyclodextrins. Besides the investigation of the influence of ionic liquids on the enantioseparation, complexes between phenethylamine enantiomers and β cyclodextrin derivatives were characterized by affinity capillary electrophoresis. The binding constants between analyte enantiomers and cyclodextrins and the electrophoretic mobilities of the temporarily formed complexes were determined and compared to the observed chiral resolution values. While neither the calculated binding constants nor their differences correlated with the quality of the enantioseparation, a strong correlation between the differences of the electrophoretic mobilities of the complexes and the chiral resolution values was found.}, subject = {Kapillarelektrophorese}, language = {en} } @phdthesis{Berninger2019, author = {Berninger, Michael}, title = {Development of Novel Quinolone Amides Against the African Sleeping Sickness - A Fluorine Walk}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-176428}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {In recent years the transmission of the Human African Trypanosomiasis could be significantly reduced. The reported cases in 2016 reached a historic low level of 2184 cases and these achievements can be ascribed to intense control and surveillance programmes.118 However, most of the reported cases (>1000 in 2015) occurred in the Democratic Republic of the Congo and thus, need to be treated adequately. In particular, when the parasites have traversed the blood-brain barrier (BBB), treatment proved to be even more difficult. In addition, the number of cases always came in waves due to many reasons, e.g., development of resistances. Thus, it can be expected from experiences of the past that the number of cases will increase again. Hence, novel chemical entities are desperately needed in order to overcome the drawbacks which are associated with the current treatment options. Our drug discovery approach included an initial drug repurposing strategy combined with a phenotypic screening. S. Niedermeier found novel active compounds derived from commercial fluoroquinolones. The most promising hit compound was further developed by G. Hiltensperger resulting in the lead quinolone amide GHQ168 (IC50 = 0.047 µM). This doctoral thesis is about new insights into the SAR of the quinolone amides and the enhancement of the lead compound. Special consideration was given to the fluorine atom in the quinolone amides and how certain fluorine substitution patterns influence the antitrypanosomal activity, physicochemical properties and pharmacokinetics (i.e. 'fluorine walk'). Moreover, the ability of the compound class crossing the BBB should be investigated. This feature is inevitable necessary in order to potentially treat African sleeping sickness stage II. The Gould-Jacobs protocol was predominantly used for the synthesis of the quinolone core. Since former SAR studies mainly concentrated on the variation in positions 1, 3 and 7, quinolone scaffolds (2a-i) with diverse substitution patterns regarding positions 5, 6, 7 and 8 were synthesised in this thesis. The resulting quinolone amides were evaluated for their antitrypanosomal activity. Voluminous residues in position C-5 resulted in diminished activities (compounds 13, 16 and 18) and solely small-sized moieties were tolerated. In particular the fluorine atom in position 5 revealed beneficial trypanocidal effects as shown for compounds 6 (IC50 = 0.05 µM), 8 (IC50 = 0.04 µM), and 24 (IC50 = 0.02 µM). Furthermore, having fluorine only in position 5 of the quinolone core could considerably reduce the cytotoxic effects (CC50 >100 µM, SI = >2000 for 6). Hence, the 5-fluoro-substituted quinolone amides were considered superior to GHQ168. Regarding the C-6 position all other moieties (e.g., H in 9, OCH3 in 10, CF3 in 12) except of a fluorine atom decreased the activity against Trypanosoma brucei brucei. A double fluorination in C-6 and C-8 was not beneficial (IC50 = 0.06 µM for 7) and a single fluorine atom in C-8 even showed a negative effect (IC50 = 0.79 µM for 5). The logP value is considered a surrogate parameter for lipophlicity and thus, affecting permeability and solubility processes. In particular the fluorine atom influences the lipophilicity due to versatile effects: Lipophilicity is increased by additional fluorine atoms on aromatic rings (7, 23) and reduced by fluorine atoms at an alkyl chain (49), respectively. Additionally, the 5-fluoro-substituted quinolone amides (6, 8, and 24) could prove the contrary effect of decreasing lipophilicity when the aromatic fluorine substituent is in vicinity to a carbonyl group. For the most promising drug candidates 6, 23, and 24 the respective metabolites and the metabolic turnover were investigated by C. Erk. In comparison to GHQ168 the hydroxylation of the benzylamide was prevented by the para-fluorine atom. Hence, half-life was extended for compound 23 (t1/2 = 6.4 h) and N-desalkylation was the predominant pathway. Moreover, the respective fluorine substitution pattern of the quinolone core affected the metabolism of compound 6. The 5-fluoro-substituted quinolone amide was less prone for biotransformation (t1/2 = 7.2 h) and half-life could even be further prolonged for compound 24 (t1/2 = 7.7 h). Due to the most appropriate safety profile of compound 6, this particular drug candidate was considered for in vivo study. Its poor solubility made a direct intraperitoneal administration unfeasible. Thus, an amorphous solid dispersion of 6 was generated using the spray-drying method according to the previous protocol. Unfortunately, the required solubility for the predicted in vivo study was not achieved. Furthermore, the compound class of the quinolone amide was evaluated for its ability for brain penetration. The methanesulfonyl precursor 48 was synthesised and subsequently radiofluorinated in the group of Prof. Dr. Samnick (Department of Nuclear Medicine, University Hospital of W{\"u}rzburg). The labelled compound [18F]49 was administered to mice, and its distribution throughout the body was analysed using positron emission tomography and autoradiography, respectively. The autoradiography of the murine brains revealed medium to high concentrations of [18F]49. Therefore, the quinolone amides are generally suitable for treating Human African Trypanosomiasis stage II. A scaffold hopping approach was performed starting from the quinolone amides and concluding with the compound class of pyrazoloquinolin-3-ones. The intramolecular hydrogen bond between the sec. amide and the C-4 carbonyl moiety was replaced by a covalent bond. The two compound classes were comparable regarding the antitrypanosomal activity to some degree (IC50 = 7.9 µM (EK02) vs. 6.37 µM (53a)). However, a final evaluation of 59 was not possible due to poor solubility.}, subject = {Trypanosomiase}, language = {en} } @phdthesis{Hell2019, author = {Hell, Dennis}, title = {Development of self-adjusting cytokine neutralizer cells as a closed-loop delivery system of anti-inflammatory biologicals}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-175381}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {The current treatment strategies for diseases are assessed on the basis of diagnosed phenotypic changes due to an accumulation of asymptomatic events in physiological processes. Since a diagnosis can only be established at advanced stages of the disease, mainly due to insufficient early detection possibilities of physiological disorders, doctors are forced to treat diseases rather than prevent them. Therefore, it is desirable to link future therapeutic interventions to the early detection of physiological changes. So-called sensor-effector systems are designed to recognise disease-specific biomarkers and coordinate the production and delivery of therapeutic factors in an autonomous and automated manner. Such approaches and their development are being researched and promoted by the discipline of synthetic biology, among others. Against this background, this paper focuses on the in vitro design of cytokine-neutralizing sensor-effector cells designed for the potential treatment of recurrent autoimmune diseases, especially rheumatoid arthritis. The precise control of inducible gene expression was successfully generated in human cells. At first, a NF-κB-dependent promoter was developed, based on HIV-1 derived DNA-binding motives. The activation of this triggerable promoter was investigated using several inducers including the physiologically important NF-κB inducers tumor necrosis factor alpha (TNFα) and interleukin 1 beta (IL-1β). The activation strength of the NF-κB-triggered promoter was doubled by integrating a non-coding RNA. The latter combined expressed RNA structures, which mimic DNA by double stranded RNAs and have been demonstrated to bind to p50 or p65 by previous publications. The sensitivity was investigated for TNFα and IL-1β. The detection limit and the EC50 values were in in the lower picomolar range. Besides the sensitivity, the reversibility and dynamic of the inducible system were characterized. Hereby a close correlation between pulse times and expression profile was shown. The optimized NF-κB-dependent promoter was then coupled to established TNFα- and IL-1-blocking biologicals to develop sensor-effector systems with anti-inflammatory activity, and thus potential use against autoimmune diseases such as rheumatoid arthritis. The biologicals were differentiated between ligand-blocking and receptor-blocking biologicals and different variants were selected: Adalimumab, etanercept and anakinra. The non-coding RNA improved again the activation strength of NF-κB-dependent expressed biologicals, indicating its universal benefit. Furthermore, it was shown that the TNFα-induced expression of NF-κB-regulated TNFα-blocking biologics led to an extracellular negative feedback loop. Interestingly, the integration of the non-coding RNA and this negative feedback loop has increased the dynamics and reversibility of the NF-κB-regulated gene expression. The controllability of drug release can also be extended by the use of inhibitors of classical NF-κB signalling such as TPCA-1. The efficacy of the expressed biologicals was detected through neutralization of the cytokines using different experiments. For future in vivo trials, first alginate encapsulations of the cells were performed. Furthermore, the activation of NF-κB-dependent promoter was demonstrated using co-cultures with human plasma samples or using synovial liquids. With this generated sensor-effector system we have developed self-adjusting cytokine neutralizer cells as a closed-loop delivery system for anit-inflammatory biologics.}, subject = {Biologika}, language = {en} } @phdthesis{Horn2019, author = {Horn, Jessica}, title = {Molecular and functional characterization of the long non-coding RNA SSR42 in \(Staphylococcus\) \(aureus\)}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-175778}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {Staphylococcus aureus asymptomatically colonizes the skin and anterior nares of 20-30\% of the healthy human population. As an opportunistic human pathogen it elicits a variety of infections ranging from skin and soft tissue infections to highly severe manifestations such as pneumonia, endocarditis and osteomyelitis. Due to the emergence of multi resistant strains, treatment of staphylococcal infections becomes more and more challenging and the WHO therefore classified S. aureus as a "superbug". The variety of diseases triggered by S. aureus is the result of a versatile expression of a large set of virulence factors. The most prominent virulence factor is the cytotoxic and haemolytic pore-forming α-toxin whose expression is mediated by a complex regulatory network involving two-component systems such as the agr quorum-sensing system, accessory transcriptional regulators and alternative sigma-factors. However, the intricate regulatory network is not yet understood in its entirety. Recently, a transposon mutation screen identified the AraC-family transcriptional regulator 'Repressor of surface proteins' (Rsp) to regulate haemolysis, cytotoxicity and the expression of various virulence associated factors. Deletion of rsp was accompanied by a complete loss of transcription of a 1232 nt long non-coding RNA, SSR42. This doctoral thesis focuses on the molecular and functional characterization of SSR42. By analysing the transcriptome and proteome of mutants in either SSR42 or both SSR42 and rsp, as well as by complementation of SSR42 in trans, the ncRNA was identified as the main effector of Rsp-mediated virulence. Mutants in SSR42 exhibited strong effects on transcriptional and translational level when compared to wild-type bacteria. These changes resulted in phenotypic alterations such as strongly reduced haemolytic activity and cytotoxicity towards epithelial cells as well as reduced virulence in a murine infection model. Deletion of SSR42 further promoted the formation of small colony variants (SCV) during long term infection of endothelial cells and demonstrated the importance of this molecule for intracellular bacteria. The impact of this ncRNA on staphylococcal haemolysis was revealed to be executed by modulation of sae mRNA stability and by applying mutational studies functional domains within SSR42 were identified. Moreover, various stressors modulated the transcription of SSR42 and antibiotic challenge resulted in SSR42-dependently increased haemolysis and cytotoxicity. Transcription of SSR42 itself was found under control of various important global regulators including AgrA, SaeS, CodY and σB, thereby illustrating a central position in S. aureus virulence gene regulation. The present study thus demonstrates SSR42 as a global virulence regulatory RNA which is important for haemolysis, disease progression and adaption of S. aureus to intracellular conditions via formation of SCVs.}, subject = {Staphylococcus aureus}, language = {en} } @phdthesis{Mayer2019, author = {Mayer, Rafaela}, title = {OxPAPC as an endogenous agonist of TRPA1 channels on nociceptors}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-175890}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {Non-steroidal antiinflammatory drugs are most commonly used for inflammatory and postoperative pain. But they lack effectiveness and specificity, leading to severe side effects, like gastric ulcers, asthma and severe bleeding. Oxidized 1-palmitoyl-2-arachinidonoyl-sn-glycero-3-phosphocholine (OxPAPC) plays an important role in inflammatory pain. PAPC is a common phosphatidylcholine of membranes, which can be oxidized by reactive oxygen species. In preliminary experiments, our group found that local injection of OxPAPC in rat paws induces hyperalgesia. In this study we examined the effect of OxPAPC on transient receptor potential A1 (TRPA1), an ion channel expressed in C-fiber neurons. Furthermore, we investigated if intracellular cysteine residues of TRPA1 were necessary for agonist-channel-interactions and if a subsequent TRPA1 activation could be prevented by OxPAPC scavengers. To answer these questions, we performed calcium imaging using HEK-293 cells stably expressing hTRPA1, or transiently expressing the triple mutant channel hTRPA1-3C and na{\"i}ve DRG neurons. Cells were incubated with the ratiometric, fluorescent dye Fura-2/AM and stimulated with OxPAPC. The change of light emission after excitation with 340 and 380 nm wavelengths allowed conclusions regarding changes of intracellular calcium concentrations after TRPA1 activation. In our investigation we proved evidence that OxPAPC activates TRPA1, which caused a flow of calcium ions into the cytoplasm. The TRPA1-specific channel blocker HC-030031 eliminated this agonist-induced response. TRPA1-3C was not completely sensitive to OxPAPC. The peptide D-4F and the monoclonal antibody E06 neutralized OxPAPC-induced TRPA1 activation. In this work, the importance of OxPAPC as a key mediator of inflammatory pain and as a promising target for drug design is highlighted. Our results indicate that TRPA1 activation by OxPAPC involves cysteine-dependent mechanisms, but there are other, cysteine-independent activation mechanisms as well. Potential pharmaceuticals for the treatment of inflammatory pain are D-4F and E06, whose efficiency has recently been confirmed in the animal model by our research group.}, subject = {Schmerzforschung}, language = {en} } @article{Schlenkrich2019, author = {Schlenkrich, Oliver}, title = {Identifying Profiles of Democracies: A Cluster Analysis Based on the Democracy Matrix Dataset from 1900 to 2017}, series = {Politics and Governance}, volume = {7}, journal = {Politics and Governance}, number = {4}, issn = {2183-2463}, doi = {10.17645/pag.v7i4.2244}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-150882}, pages = {315-330}, year = {2019}, abstract = {This study examines types of democracies that result from trade-offs within the democratic quality. Recently, the existence and relevance of trade-offs has been widely discussed. The idea is that the functions associated with the quality of democracy cannot all be maximized simultaneously. Thus, trade-offs are expressed in distinct profiles of democracy. Different profiles of democracy favour certain democracy dimensions over others due to their institutional design. Conceptually, we differentiate between four different democracy profiles: a libertarian-majoritarian (high political freedom, lower political equality, and lower political and legal control values), an egalitarian-majoritarian (high equality combined with lower freedom and control values), as well as two control-focused democracy profiles (high control values either with high degrees of freedom or high degrees of equality). We apply a cluster analysis with a focus on cluster validation on the Democracy Matrix dataset—a customized version of the Varieties-of-Democracy dataset. To increase the robustness of the cluster results, this study uses several different cluster algorithms, multiple fit indices as well as data resampling techniques. Based on all democracies between 1900 and 2017, we find strong empirical evidence for these democracy profiles. Finally, we discuss the temporal development and spatial distribution of the democracy profiles globally across the three waves of democracy, as well as for individual countries.}, language = {en} } @phdthesis{Zilker2019, author = {Zilker, Markus}, title = {The stability of finished pharmaceutical products and drug substances beyond their labeled expiry dates}, doi = {10.25972/OPUS-18069}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-180695}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {Upon approval of a drug, the stability of the API and the FPP has to be studied intensively because it determines the shelf-life. If a drug is found to be stable, the expiry date is arbitrary set to five years at the maximum, if a drug tends to undergo degradation, the expiry date is set shorter. The drug product must comply with predefined specifications in accordance with the ICH guidelines Q6A and Q6B during its entire market life. The content of the active substance is required to be within a specification of 95-105\% of its labeled claim until expiry corresponding to the ICH guideline Q1A(R2). However, there is little or scattered literature information addressing the stability of drug products beyond their expiry dates. The objective of this thesis was to study and assess the long-term stability of a collection involving numerous pure drug substances and ampoules manufactured in the 20th century. The content and the impurity profile were examined by means of appropriate analytical methods, mainly using liquid chromatography. The results were compared to data being available in the literature. Assessing the stability regarding the dosage form and the affiliation of the drug class was conducted. The experimental studies comprise the examination of 50 drug substances manufactured 20-30 years ago and 14 long expired ampoules which were older than 40 years in the time of analysis, exceeding many times the maximum shelf life of five years. For investigation of the solid drug substances, pharmacopoeial methods were applied as far as possible. Indeed, results of the study showed that 44 tested substances still complied with the specification of the Ph. Eur. with regard to the content and impurity profile, even after more than two decades of storage. For analysis of the injection solutions, HPLC-UV and HPLC-ESI/MS techniques were applied, commonly based on liquid chromatography methods of the Ph. Eur. for determination of related substances. Each method was further validated for its application to ensure accurate API quantification corresponding to ICH Q2(R1). Quite a few ampoules were identified to show surprisingly high stability. In spite of their age of 53-72 years, APIs such as caffeine, etilefrine, synephrine, metamizole sodium, furosemide, and sodium salicylate complied with the specified content that is valid nowadays, respectively. Nevertheless, typical degradation reaction, e.g. hydrolysis, oxidation, or isomerization, was observed in all remaining ampoules. Various degrees of hydrolysis were revealed for scopolamine, procaine, and adenosine triphosphate, the contents were decreased to 71\%, 70\%, and 15\% of the declared concentrations, respectively. In the epinephrine and dipyridamole ampoules, oxidative degradation has been occurred, finding respective API contents of more or less 70\%. For dihydroergotamine, excessive decomposition by epimerization was observed, resulting in an API content of 21\% and degradation by isomerization was found in lobeline, still containing 64\% of the labeled claim. In conclusion, supported by the data of the present studies and the literature, defining and authorizing a longer shelf-life may be applicable to numerous pharmaceuticals which should be considered by pharmaceutical manufacturers and regulatory authorities, if justified based on stability studies. A general extension of the shelf-lives of drug products and the abolishment or extension of the maximum shelf-life limit of five years would prevent disposing of still potent medications and save a lot of money to the entire health care system.}, subject = {Stabilit{\"a}t}, language = {en} } @unpublished{BreitenbachBorzi2019, author = {Breitenbach, Tim and Borz{\`i}, Alfio}, title = {On the SQH scheme to solve non-smooth PDE optimal control problems}, series = {Numerical Functional Analysis and Optimization}, journal = {Numerical Functional Analysis and Optimization}, doi = {10.1080/01630563.2019.1599911}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-180936}, year = {2019}, abstract = {A sequential quadratic Hamiltonian (SQH) scheme for solving different classes of non-smooth and non-convex PDE optimal control problems is investigated considering seven different benchmark problems with increasing difficulty. These problems include linear and nonlinear PDEs with linear and bilinear control mechanisms, non-convex and discontinuous costs of the controls, L\(^1\) tracking terms, and the case of state constraints. The SQH method is based on the characterisation of optimality of PDE optimal control problems by the Pontryagin's maximum principle (PMP). For each problem, a theoretical discussion of the PMP optimality condition is given and results of numerical experiments are presented that demonstrate the large range of applicability of the SQH scheme.}, language = {en} } @phdthesis{Endres2019, author = {Endres, Ralph Julian}, title = {Networks of fear: Functional connectivity of the amygdala, the insula and the anterior cingulate cortex in two subtypes of specific phobia}, doi = {10.25972/OPUS-18095}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-180950}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {Neuroimaging research has highlighted the relevance of well-balanced functional brain interactions as an essential basis for efficient emotion regulation. In contrast, abnormal coupling of fear-processing regions such as the amygdala, the anterior cingulate cortex (ACC) and the insula could be an important feature of anxiety disorders. Although activity alterations of these regions have been frequently reported in specific phobia, little is known about their functional interactions during phobogenic stimulus processing. To explore these interrelationships in two subtypes of specific phobia - i.e., the blood-injection-injury subtype and the animal subtype - functional connectivity (FC) was analyzed in three fMRI studies. Two studies examined fear processing in a dental phobia group (DP), a snake phobia group (SP) and a healthy control group (HC) during visual phobogenic stimuli presentation while a third study investigated differences between auditory and visual stimuli presentation in DP and HC. Due to a priori hypotheses of impaired interactions between the amygdala, the ACC and the insula, a first analysis was conducted to explore the FC within these three regions of interest. Based on emerging evidence of functionally diverse subregions, the ACC was further divided into a subgenual, pregenual and dorsal ACC and the insula was divided into a ventral-anterior, dorsal-anterior and posterior region. Additionally, an exploratory seed-to-voxel analysis using the amygdala, ACC and insula as seeds was conducted to scan for connectivity patterns across the whole brain. The analyses revealed a negative connectivity of the ACC and the amygdala during phobogenic stimulus processing in controls. This connectivity was predominantly driven by the affective ACC subdivision. By contrast, SP was characterized by an increased mean FC between the examined regions. Interestingly, this phenomenon was specific for auditory, but not visual symptom provocation in DP. During visual stimulus presentation, however, DP exhibited further FC alterations of the ACC and the insula with pre- and orbitofrontal regions. These findings mark the importance of balanced interactions between fear-processing regions in specific phobia, particularly of the inhibitory connectivity between the ACC and the amygdala. Theoretically, this is assumed to reflect top-down inhibition by the ACC during emotion regulation. The findings support the suggestion that SP particularly is characterized by excitatory, or missing inhibitory, (para-) limbic connectivity, reflecting an overshooting fear response based on evolutionary conserved autonomic bottom-up pathways. Some of these characteristics applied to DP as well but only under the auditory stimulation, pointing to stimulus dependency. DP was further marked by altered pre- and orbitofrontal coupling with the ACC and the insula which might represent disturbances of superordinate cognitive control on basal emotion processes. These observations strengthen the assumption that DP is predominantly based on evaluation-based fear responses. In conclusion, the connectivity patterns found may depict an intermediate phenotype that possibly confers risks for inappropriate phobic fear responses. The findings presented could also be of clinical interest. Particularly the ACC - amygdala circuit may be used as a predictive biomarker for treatment response or as a promising target for neuroscience-focused augmentation strategies as neurofeedback or repetitive transcranial magnetic stimulation.}, subject = {Kernspintomografie}, language = {en} } @article{RamlerPoaterHirschetal.2019, author = {Ramler, Jacqueline and Poater, Jordi and Hirsch, Florian and Ritschel, Benedikt and Fischer, Ingo and Bickelhaupt, F. Matthias and Lichtenberg, Crispin}, title = {Carbon monoxide insertion at a heavy p-block element: unprecedented formation of a cationic bismuth carbamoyl}, series = {Chemical Science}, volume = {10}, journal = {Chemical Science}, doi = {10.1039/C9SC00278B}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-181627}, pages = {4169 - 4176}, year = {2019}, abstract = {Major advances in the chemistry of 5th and 6th row heavy p-block element compounds have recently uncovered intriguing reactivity patterns towards small molecules such as H\(_2\), CO\(_2\), and ethylene. However, well-defined, homogeneous insertion reactions with carbon monoxide, one of the benchmark substrates in this field, have not been reported to date. We demonstrate here, that a cationic bismuth amide undergoes facile insertion of CO into the Bi-N bond under mild conditions. This approach grants direct access to the first cationic bismuth carbamoyl species. Its characterization by NMR, IR, and UV/vis spectroscopy, elemental analysis, single-crystal X-ray analysis, cyclic voltammetry, and DFT calculations revealed intriguing properties, such as a reversible electron transfer at the bismuth center and an absorption feature at 353 nm ascribed to a transition involving σ- and π-type orbitals of the bismuth-carbamoyl functionality. A combined experimental and theoretical approach provided insight into the mechanism of CO insertion. The substrate scope could be extended to isonitriles.}, language = {en} } @phdthesis{Grimm2019, author = {Grimm, Johannes}, title = {Autocrine and paracrine effects of BRAF inhibitor induced senescence in melanoma}, doi = {10.25972/OPUS-18116}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-181161}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {The FDA approval of targeted therapy with BRAFV600E inhibitors like vemurafenib and dabrafenib in 2011 has been the first major breakthrough in the treatment of metastatic melanoma since almost three decades. Despite increased progression free survival and elevated overall survival rates, complete responses are scarce due to resistance development approximately six months after the initial drug treatment. It was previously shown in our group that melanoma cells under vemurafenib pressure in vitro and in vivo exhibit features of drug-induced senescence. It is known that some cell types, which undergo this cell cycle arrest, develop a so-called senescence associated secretome and it has been reported that melanoma cell lines also upregulate the expression of different factors after senescence induction. This work describes the effect of the vemurafenib-induced secretome on cells. Conditioned supernatants of vemurafenib-treated cells increased the viability of naive fibroblast and melanoma cell lines. RNA analysis of donor melanoma cells revealed elevated transcriptional levels of FGF1, MMP2 and CCL2 in the majority of tested cell lines under vemurafenib pressure, and I could confirm the secretion of functional proteins. Similar observations were also done after MEK inhibition as well as in a combined BRAF and MEK inhibitor treatment situation. Interestingly, the transcription of other FGF ligands (FGF7, FGF17) was also elevated after MEK/ERK1/2 inhibition. As FGF receptors are therapeutically relevant, I focused on the analysis of FGFR-dependent processes in response to BRAF inhibition. Recombinant FGF1 increased the survival rate of melanoma cells under vemurafenib pressure, while inhibition of the FGFR pathway diminished the viability of melanoma cells in combination with vemurafenib and blocked the stimulatory effect of vemurafenib conditioned medium. The BRAF inhibitor induced secretome is regulated by active PI3K/AKT signaling, and the joint inhibition of mTor and BRAFV600E led to decreased senescence induction and to a diminished induction of the secretome-associated genes. In parallel, combined inhibition of MEK and PI3K also drastically decreased mRNA levels of the relevant secretome components back to basal levels. In summary, I could demonstrate that BRAF inhibitor treated melanoma cell lines acquire a specific PI3K/AKT dependent secretome, which is characterized by FGF1, CCL2 and MMP2. This secretome is able to stimulate other cells such as naive melanoma cells and fibroblasts and contributes to a better survival under drug pressure. These data are therapeutically highly relevant, as they imply the usage of novel drug combinations, especially specific FGFR inhibitors, with BRAF inhibitors in the clinic.}, subject = {Inhibitor}, language = {en} } @unpublished{HuberPresWittmannetal.2019, author = {Huber, Bernhard and Pres, Sebastian and Wittmann, Emanuel and Dietrich, Lysanne and L{\"u}ttig, Julian and Fersch, Daniel and Krauss, Enno and Friedrich, Daniel and Kern, Johannes and Lisinetskii, Victor and Hensen, Matthias and Hecht, Bert and Bratschitsch, Rudolf and Riedle, Eberhard and Brixner, Tobias}, title = {Space- and time-resolved UV-to-NIR surface spectroscopy and 2D nanoscopy at 1 MHz repetition rate}, issn = {0034-6748}, doi = {10.1063/1.5115322}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-191906}, year = {2019}, abstract = {We describe a setup for time-resolved photoemission electron microscopy (TRPEEM) with aberration correction enabling 3 nm spatial resolution and sub-20 fs temporal resolution. The latter is realized by our development of a widely tunable (215-970 nm) noncollinear optical parametric amplifier (NOPA) at 1 MHz repetition rate. We discuss several exemplary applications. Efficient photoemission from plasmonic Au nanoresonators is investigated with phase-coherent pulse pairs from an actively stabilized interferometer. More complex excitation fields are created with a liquid-crystal-based pulse shaper enabling amplitude and phase shaping of NOPA pulses with spectral components from 600 to 800 nm. With this system we demonstrate spectroscopy within a single plasmonic nanoslit resonator by spectral amplitude shaping and investigate the local field dynamics with coherent two-dimensional (2D) spectroscopy at the nanometer length scale ("2D nanoscopy"). We show that the local response varies across a distance as small as 33 nm in our sample. Further, we report two-color pump-probe experiments using two independent NOPA beamlines. We extract local variations of the excited-state dynamics of a monolayered 2D material (WSe2) that we correlate with low-energy electron microscopy (LEEM) and reflectivity (LEER) measurements. Finally, we demonstrate the in-situ sample preparation capabilities for organic thin films and their characterization via spatially resolved electron diffraction and dark-field LEEM.}, language = {en} } @phdthesis{Kraehnke2019, author = {Kr{\"a}hnke, Martin}, title = {Chondrogenic differentiation of bone marrow-derived stromal cells in pellet culture and silk scaffolds for cartilage engineering - Effects of different growth factors and hypoxic conditions}, doi = {10.25972/OPUS-19299}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-192999}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {Articular cartilage lesions that occur upon intensive sport, trauma or degenerative disease represent a severe therapeutic problem. At present, osteoarthritis is the most common joint disease worldwide, affecting around 10\% of men and 18\% of women over 60 years of age (302). The poor self-regeneration capacity of cartilage and the lack of efficient therapeutic treatment options to regenerate durable articular cartilage tissue, provide the rationale for the development of new treatment options based on cartilage tissue engineering approaches (281). The integrated use of cells, biomaterials and growth factors to guide tissue development has the potential to provide functional substitutes of lost or damaged tissues (2,3). For the regeneration of cartilage, the availability of mesenchymal stromal cells (MSCs) or their recruitment into the defect site is fundamental (281). Due to their high proliferation capacity, the possibility to differentiate into chondrocytes and their potential to attract other progenitor cells into the defect site, bone marrow-derived mesenchymal stromal cells (BMSCs) are still regarded as an attractive cell source for cartilage tissue engineering (80). However, in order to successfully engineer cartilage tissue, a better understanding of basic principles of developmental processes and microenvironmental cues that guide chondrogenesis is required.}, subject = {Hypoxie}, language = {en} } @phdthesis{Buschmann2019, author = {Buschmann, Rachel Abigail}, title = {Synthesis of annulated pi-systems based on a tribenzotriquinacene core}, doi = {10.25972/OPUS-19349}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-193491}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {The aim of this work was the selective functionalisation of tribenzotriquinacene (TBTQ) in order to extend the aromatic system and tune the electronic properties. The synthesised molecules could be starting materials for a model system of a defective graphene fragment. The "triple cyclisation pathway" by Hopf et al. was adapted and fluorinated tribenzotriquinacenes were synthesised for the first time. Phenanthrene groups were also introduced in other model systems and the crystal structures of phenanthrene functionalised TBTQs were compared with the parent molecules. In addition, the arrangement of TBTQ and centro methyl functionalised TBTQ was investigated on a Ag(111) surface for the first time using scanning transmission microscopy (STM). Different arrangements were observed, depending on the coverage of the surface. The insights gained about the interaction between TBTQs as well as their synthesis provide a foundation for further work and potential applications as components in organic electronic devices.}, subject = {Triquinacenderivate}, language = {en} } @phdthesis{Northe2019, author = {Northe, Christian}, title = {Interfaces and Information in Gauge/Gravity Duality}, doi = {10.25972/OPUS-19159}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-191594}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {This dissertation employs gauge/gravity duality to investigate features of ( 2 + 1 ) -dimensional quantum gravity in Anti-de Sitter space (AdS) and its relation to conformal field theory (CFT) in 1 + 1 dimensions. Concretely, we contribute to research on the frontier of gauge/gravity with condensed matter as well as the frontier with quantum informa- tion. The first research topic of this thesis is motivated by the Kondo model, which describes the screening of magnetic impurities in metals by conduction electrons at low temperatures. This process has a de- scription in the language of string theory via fluctuating surfaces in spacetime, called branes. At high temperatures the unscreened Kondo impurity is modelled by a stack of pointlike branes. At low tempera- tures this stack condenses into a single spherical, two-dimensional brane which embodies the screened impurity. This thesis demonstrates how this condensation process is naturally reinvoked in the holographic D1/D5 system. We find brane configu- rations mimicking the Kondo impurities at high and low energies and establish the corresponding brane condensation, where the brane grows two additional dimensions. We construct supergravity solutions, which fully take into account the effect of the brane on its surrounding space- time before and after the condensation takes place. This enables us to compute the full impurity entropies through which we confirm the validity of the g-theorem. The second research topic is rooted in the connection of geometry with quantum information. The motivation stems from the "complexity equals volume" proposal, which relates the volume of wormholes to the cicruit complexity of a thermal quantum state. We approach this proposal from a pragmatic point of view by studying the properties of certain volumes in gravity and their description in the CFT. We study subregion complexities, which are the volumes of the re- gions subtended by Ryu-Takayanagi (RT) geodesics. On the gravity side we reveal their topological properties in the vacuum and in ther- mal states, where they turn out to be temperature independent. On the field theory side we develop and proof a formula using kinematic space which computes subregion complexities without referencing the bulk. We apply our formula to global AdS 3 , the conical defect and a black hole. While entanglement, i.e. minimal boundary anchored geodesics, suffices to produce vacuum geometries, for the conical defect we also need geodesics windings non-trivially around the singularity. The black hole geometry requires additional thermal contributions.}, subject = {Information}, language = {en} } @phdthesis{Lindner2019, author = {Lindner, Joachim Oliver}, title = {Multistate Metadynamics with Electronic Collective Variables}, doi = {10.25972/OPUS-19163}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-191638}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {The aim of this thesis was to develop new automatic enhanced sampling methods by extending the idea of Parrinello's metadynamics to multistate problems and by introducing new quantum-mechanical electronic collective variables. These methods open up a rich perspective for applications to the photophysical processes in complex molecular systems, which play a major role in many natural processes such as vision and photosynthesis, but also in the development of new materials for organic electronics, whose function depends on specific electronic properties such as biradicalicity.}, subject = {Theoretische Chemie}, language = {en} } @phdthesis{Wiesbeck2019, author = {Wiesbeck, Christina}, title = {Fabrication and characterization of NCO-sP(EO-stat-PO)- crosslinked and functionalized electrospun gelatin scaffolds for tissue engineering applications}, doi = {10.25972/OPUS-19098}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-190988}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {In Tissue Engineering, scaffolds composed of natural polymers often show a distinct lack in stability. The natural polymer gelatin is highly fragile under physiological conditions, nevertheless displaying a broad variety of favorable properties. The aim of this study was to fabricate electrospun gelatin nanofibers, in situ functionalized and stabilized during the spinning process with highly reactive star polymer NCO-sP(EO-stat-PO) ("sPEG"). A spinning protocol for homogenous, non-beaded, 500 to 1000 nm thick nanofibers from different ratios of gelatin and sPEG was successfully established. Fibers were subsequently characterized and tested with SEM imaging, tensile tests, water incubation, FTIR, EDX, and cell culture. It was shown that adding sPEG during the spinning process leads to an increase in visible fiber crosslinking, mechanical stability, and stability in water. The nanofibers were further shown to be biocompatible in cell culture with RAW 264.7 macrophages.}, subject = {Tissue Engineering}, language = {en} } @phdthesis{Kremer2019, author = {Kremer, Antje}, title = {Tissue Engineering of a Vascularized Meniscus Implant}, doi = {10.25972/OPUS-18432}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-184326}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {The knee joint is a complex composite joint containing the C-shaped wedge-like menisci composed of fibrocartilage. Due to their complex composition and structure, they provide mechanical resilience to the knee joint protecting the articular cartilage. Because of the limited repair potential, meniscal injuries do not only affect the meniscus itself but also lead to altered joint homeostasis and inevitably to secondary osteoarthritis. The meniscus was characterized focusing on its anatomy, structure and meniscal markers such as aggrecan, collagen type I (Col I) and Col II. The components relevant for meniscus tissue engineering, namely cells, Col I scaffolds, biochemical and biomechanical stimuli were studied. Meniscal cells (MCs) were isolated from meniscus, mesenchymal stem cells (MSCs) from bone marrow and dermal microvascular endothelial cells (d-mvECs) from foreskin biopsies. For the human (h) meniscus model, wedge-shape compression of a hMSC-laden Col I gel was successfully established. During three weeks of static culture, the biochemical stimulus transforming growth factor beta-3 (TGF beta-3) led to a compact collagen structure. On day 21, this meniscus model showed high metabolic activity and matrix remodeling as confirmed by matrix metalloproteinases detection. The fibrochondrogenic properties were illustrated by immunohistochemical detection of meniscal markers, significant GAG/DNA increase and increased compressive properties. For further improvement, biomechanical stimulation systems by compression and hydrostatic pressure were designed. As one vascularization approach, direct stimulation with ciclopirox olamine (CPX) significantly increased sprouting of hd-mvEC spheroids even in absence of auxiliary cells such as MSCs. Second, a cell sheet composed of hMSCs and hd-mvECs was fabricated by temperature triggered cell sheet engineering and transferred onto the wedge-shaped meniscus model. Third, a biological vascularized scaffold (BioVaSc-TERM) was re-endothelialized with hd-mvECs providing a viable vascularized network. The vascularized BioVaSc-TERM was suggested as wrapping scaffold of the meniscus model by using two suture techniques, the all-inside-repair (AIR) for the posterior horn, and the outside-in-refixation (OIR) for the anterior horn and the middle part. This meniscus model for replacing torn menisci is a promising approach to be further optimized regarding vascularization, biochemical and biomechanical stimuli.}, subject = {Meniskus}, language = {en} } @phdthesis{Loeffler2019, author = {L{\"o}ffler, Mona Christina}, title = {Protein kinase D1 deletion in adipocytes enhances energy dissipation and protects against adiposity}, doi = {10.25972/OPUS-18859}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-188593}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {Adaptation to alterations in nutrient availability ensures the survival of organisms. In vertebrates, adipocytes play a decisive role in this process due to their ability to store large amounts of excess nutrients and release them in times of food deprivation. In todays western world, a rather unlimited excess of nutrients leads to high-caloric food consumption in humans. Nutrient overload together with a decreased energy dissipation result in obesity as well as associated diseases such as insulin resistance, diabetes, and liver steatosis. Obesity causes a hormonal imbalance, which in combination with altered nutrient levels can aberrantly activate G-protein coupled receptors utilizing diacylglycerol (DAG) as secondary messenger. Protein kinase D (PKD) 1 is a DAG effector integrating multiple hormonal and nutritional inputs. Nevertheless, its physiological role in adipocytes has not been investigated so far. In this thesis, evidence is provided that the deletion of PKD1 in adipocytes suppresses lipogenesis as well as the accumulation of triglycerides. Furthermore, PKD1 depletion results in increased mitochondrial biogenesis as well as decoupling activity. Moreover, PKD1 deletion promotes the expression of the β3-adrenergic receptor (ADRB3) in a CCAAT/enhancer-binding protein (C/EBP)-α and δ-dependent manner. This results in elevated expression levels of beige markers in adipocytes in the presence of a β-agonist. Contrarily, adipocytes expressing a constitutive active form of PKD1 present a reversed phenotype. Additionally, PKD1 regulates adipocyte metabolism in an AMP-activated protein kinase (AMPK)-dependent manner by suppressing its activity through phosphorylation of AMPK α1/α2 subunits. Thus, PKD1 deletion results in an enhanced activity of the AMPK complex. Consistent with the in vitro findings, mice lacking PKD1 in adipocytes demonstrate a resistance to high-fat diet-induced obesity due to an elevated energy expenditure caused by trans-differentiation of white into beige adipocytes. Moreover, deletion of PKD1 in murine adipocytes improves systemic insulin sensitivity and ameliorates liver steatosis. Finally, PKD1 levels positively correlate with HOMA-IR as well as insulin levels in human subjects. Furthermore, inhibition of PKD1 in human adipocytes leads to metabolic alterations, which are comparable to the alterations seen in their murine counterparts. Taken together, these data demonstrate that PKD1 suppresses energy dissipation, drives lipogenesis, and adiposity. Therefore, increased energy dissipation induced by several complementary mechanisms upon PKD1 deletion might represent an attractive strategy to treat obesity and its related complications.}, subject = {Proteinkinase D}, language = {en} } @phdthesis{Huestegge2019, author = {Huestegge, Sujata Maya}, title = {Cognitive mechanisms of voice processing}, doi = {10.25972/OPUS-18608}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-186086}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {The present thesis addresses cognitive processing of voice information. Based on general theoretical concepts regarding mental processes it will differentiate between modular, abstract information processing approaches to cognition and interactive, embodied ideas of mental processing. These general concepts will then be transferred to the context of processing voice-related information in the context of parallel face-related processing streams. One central issue here is whether and to what extent cognitive voice processing can occur independently, that is, encapsulated from the simultaneous processing of visual person-related information (and vice versa). In Study 1 (Huestegge \& Raettig, in press), participants are presented with audio-visual stimuli displaying faces uttering digits. Audiovisual gender congruency was manipulated: There were male and female faces, each uttering digits with either a male or female voice (all stimuli were AV- synchronized). Participants were asked to categorize the gender of either the face or the voice by pressing one of two keys in each trial. A central result was that audio-visual gender congruency affected performance: Incongruent stimuli were categorized slower and more error-prone, suggesting a strong cross-modal interaction of the underlying visual and auditory processing routes. Additionally, the effect of incongruent visual information on auditory classification was stronger than the effect of incongruent auditory information on visual categorization, suggesting visual dominance over auditory processing in the context of gender classification. A gender congruency effect was also present under high cognitive load. Study 2 (Huestegge, Raettig, \& Huestegge, in press) utilized the same (gender-congruent and -incongruent) stimuli, but different tasks for the participants, namely categorizing the spoken digits (into odd/even or smaller/larger than 5). This should effectively direct attention away from gender information, which was no longer task-relevant. Nevertheless, congruency effects were still observed in this study. This suggests a relatively automatic processing of cross-modal gender information, which eventually affects basic speech-based information processing. Study 3 (Huestegge, subm.) focused on the ability of participants to match unfamiliar voices to (either static or dynamic) faces. One result was that participants were indeed able to match voices to faces. Moreover, there was no evidence for any performance increase when dynamic (vs. mere static) faces had to be matched to concurrent voices. The results support the idea that common person-related source information affects both vocal and facial features, and implicit corresponding knowledge appears to be used by participants to successfully complete face-voice matching. Taken together, the three studies (Huestegge, subm.; Huestegge \& Raettig, in press; Huestegge et al., in press) provided information to further develop current theories of voice processing (in the context of face processing). On a general level, the results of all three studies are not in line with an abstract, modular view of cognition, but rather lend further support to interactive, embodied accounts of mental processing.}, subject = {Stimme}, language = {en} } @phdthesis{Eckstein2019, author = {Eckstein, Klaus}, title = {Linear and Nonlinear Spectroscopy of Doped Carbon Nanotubes}, doi = {10.25972/OPUS-18897}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-188975}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {Doping plays a decisive role for the functionality of semiconductor-based (opto-)electronic devices. Hence, the technological utilization of semiconductors necessitates control and a fundamental understanding of the doping process. However, for low-dimensional systems like carbon nanotubes, neither concentration nor distribution of charge carriers is currently well known. The research presented in this thesis investigated the doping of semiconducting carbon nanotubes by spectroscopic methods. Samples of highly purified, intrinsic (6,5) single-wall carbon nanotubes were fabricated using polymer stabilization. Chapter 4 showed that both electro- and redox chemical \$p\$-doping lead to identical bleaching, blueshift, broadening and asymmetry of the S\$_1\$ exciton absorption band. The similar spectral changes induced by both doping schemes suggest that optical spectra can not be used to infer what process was used for doping. Perhaps more importantly, it also indicates that the distribution of charges and the character of the charge transfer states does not depend on the method by which doping was achieved. The detailed analysis of the doping-induced spectral changes in chapter 5 suggests that surplus charges are distributed inhomogeneously. The hypothesis of carrier localization is consistent with the high sensitivity of the S\$_1\$ exciton photoluminescence to additional charge carriers and with the stretched-exponential decay of the exciton population following ultrafast excitation. Both aspects are in good agreement with diffusion-limited contact quenching of excitons at localized charges. Moreover, localized charges act - similar to structural defects - as perturbations to the bandstructure as evidenced by a doping-induced increase of the D-band antiresonance in the mid-infrared spectrum. Quantum mechanical model calculations also suggest that counterions play a crucial role in carrier localization. Counterion adsorption at the nanotube surface is thus believed to induce charge traps of more than 100 meV depth with a carrier localization length on the order of 3 - 4 nm. The doping-induced bleach of interband absorption is accompanied by an absorption increase in the IR region below 600 meV. The observed shift of the IR peak position indicates a continuous transition from localized to rather delocalized charge carriers. This transition is caused by the increase of the overlap of charge carrier wavefunctions at higher charge densities and was modeled by classical Monte-Carlo simulations of intraband absorption. Chapter 6 discussed the spectroscopy of heavily (degenerately) doped nanotubes, which are characterized by a Drude-response of free-carrier intraband absorption in the optical conductivity spectrum. In the NIR spectral region, the S\$_1\$ exciton and X\$+^_1\$ trion absorption is replaced by a nearly 1 eV broad and constant absorption signal, the so-called H-band. The linear and transient absorption spectra of heavily doped nanotubes suggest that the H-band can be attributed to free-carrier interband transitions. Chapter 7 dealt with the quantification of charge carrier densities by linear absorption spectroscopy. A particularly good measure of the carrier density is the S\$_1\$ exciton bleach. For a bleach below about 50 \%, the carrier density is proportional to the bleach. At higher doping levels, deviations from the linear behavior were observed. For doping levels exceeding a fully bleached S\$_1\$ band, the determination of the normalized oscillator strength f\$\text{1st}\$ over the whole first subband region (trion, exciton, free e-h pairs) is recommended for quantification of carrier densities. Based on the nanotube density of states, the carrier density \$n\$ can be estimated using \$n = 0.74\,\text{nm}^{-1} \cdot (1 - f_\text{1st})\$. In the last part of this thesis (chapter 8), the time-resolved spectroelectrochemistry was extended to systems beyond photostable carbon nanotube films. The integration of a flowelectrolysis cell into the transient absorption spectrometer allows the investigation of in-situ electrochemically generated but photounstable molecules due to a continuous exchange of sample volume. First time-resolved experiments were successfully performed using the dye methylene blue and its electrochemically reduced form leucomethylene blue.}, subject = {Dotierung}, language = {en} } @phdthesis{Zapf2019, author = {Zapf, Michael}, title = {Oxidische Perovskite mit Hoher Massenzahl Z: D{\"u}nnfilmdeposition und Spektroskopische Untersuchungen}, doi = {10.25972/OPUS-18537}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-185370}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {Perovskite oxides are a very versatile material class with a large variety of outstanding physical properties. A subgroup of these compounds particularly tempting to investigate are oxides involving high-\(Z\) elements, where spin-orbit coupling is expected to give rise to new intriguing phases and potential application-relevant functionalities. This thesis deals with the preparation and characterization of two representatives of high-\(Z\) oxide sample systems based on KTaO\(_3\) and BaBiO\(_3\). KTaO\(_3\) is a band insulator with an electronic valence configuration of Ta 5\(d\)\(^0\) . It is shown that by pulsed laser deposition of a disordered LaAlO\(_3\) film on the KTaO\(_3\)(001) surface, through the creation of oxygen vacancies, a Ta 5\(d\)\(^{0+\(\delta\)}\) state is obtained in the upmost crystal layers of the substrate. In consequence a quasi two dimensional electron system (q2DES) with large spin-orbit coupling emerges at the heterointerface. Measurements of the Hall effect establish sheet carrier densities in the range of 0.1-1.2 10\(^{14}\) cm\(^2\), which can be controlled by the applied oxygen background pressure during deposition and the LaAlO\(_3\) film thickness. When compared to the prototypical oxide q2DESs based on SrTiO\(_3\) crystals, the investigated system exhibits exceptionally large carrier mobilities of up to 30 cm\(^2\)/Vs (7000 cm\(^2\)/Vs) at room temperature (below 10 K). Through a depth profiling by photoemission spectra of the Ta 4\(f\) core level it is shown that the majority of the Ta 5\(d\)\(^0\) charge carriers, consisting of mobile and localized electrons, is situated within 4 nm from the interface at low temperatures. Furthermore, the momentum-resolved electronic structure of the q2DES \(buried\) underneath the LaAlO\(_3\) film is probed by means of hard X-ray angle-resolved photoelectron spectroscopy. It is inferred that, due to a strong confinement potential of the electrons, the band structure of the system is altered compared to \(n\)-doped bulk KTO. Despite the constraint of the electron movement along one direction, the Fermi surface exhibits a clear three dimensional momentum dependence, which is related to a depth extension of the conduction channels of at least 1 nm. The second material, BaBiO\(_3\), is a charge-ordered insulator, which has recently been predicted to emerge as a large-gap topological insulator upon \(n\)-doping. This study reports on the thin film growth of pristine BaBiO\(_3\) on Nb:SrTiO\(_3\)(001) substrates by means of pulsed laser deposition. The mechanism is identified that facilitates the development of epitaxial order in the heterostructure despite the presence of an extraordinary large lattice mismatch of 12 \%. At the heterointerface, a structurally modified layer of about 1.7 nm thickness is formed that gradually relieves the in-plane strain and serves as the foundation of a relaxed BBO film. The thereupon formed lattice orders laterally in registry with the substrate with the orientation BaBiO\(_3\)(001)||SrTiO\(_3\)(001) by so-called domain matching, where 8 to 9 BaBiO\(_3\) unit cells align with 9 to 10 unit cells of the substrate. Through the optimization of the deposition conditions in regard to the cation stoichiometry and the structural lattice quality, BaBiO\(_3\) thin films with bulk-like electronic properties are obtained, as is inferred from a comparison of valence band spectra with density functional theory calculations. Finally, a spectroscopic survey of BaBiO\(_3\) samples of various thicknesses resolves that a recently discovered film thickness-controlled phase transition in BaBiO\(_3\) thin films can be traced back to the structural and concurrent stoichiometric modifications occuring in the initially formed lattice on top of the SrTiO\(_3\) substrate rather than being purely driven by the smaller spatial extent of the BBO lattice.}, subject = {Perowskit}, language = {en} } @phdthesis{Lyutova2019, author = {Lyutova, Radostina}, title = {Functional dissection of recurrent feedback signaling within the mushroom body network of the Drosophila larva}, doi = {10.25972/OPUS-18728}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-187281}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {Behavioral adaptation to environmental changes is crucial for animals' survival. The prediction of the outcome of one owns action, like finding reward or avoiding punishment, requires recollection of past experiences and comparison with current situation, and adjustment of behavioral responses. The process of memory acquisition is called learning, and the Drosophila larva came up to be an excellent model organism for studying the neural mechanisms of memory formation. In Drosophila, associative memories are formed, stored and expressed in the mushroom bodies. In the last years, great progress has been made in uncovering the anatomical architecture of these brain structures, however there is still a lack of knowledge about the functional connectivity. Dopamine plays essential roles in learning processes, as dopaminergic neurons mediate information about the presence of rewarding and punishing stimuli to the mushroom bodies. In the following work, the function of a newly identified anatomical connection from the mushroom bodies to rewarding dopaminergic neurons was dissected. A recurrent feedback signaling within the neuronal network was analyzed by simultaneous genetic manipulation of the mushroom body Kenyon cells and dopaminergic neurons from the primary protocerebral anterior (pPAM) cluster, and learning assays were performed in order to unravel the impact of the Kenyon cells-to-pPAM neurons feedback loop on larval memory formation. In a substitution learning assay, simultaneous odor exposure paired with optogenetic activation of Kenyon cells in fruit fly larvae in absence of a rewarding stimulus resulted in formation of an appetitive memory, whereas no learning behavior was observed when pPAM neurons were ablated in addition to the KC activation. I argue that the activation of Kenyon cells may induce an internal signal that mimics reward exposure by feedback activation of the rewarding dopaminergic neurons. My data further suggests that the Kenyon cells-to-pPAM communication relies on peptidergic signaling via short neuropeptide F and underlies memory stabilization.}, subject = {Lernen}, language = {en} } @phdthesis{Weber2019, author = {Weber, Manuel}, title = {Action-based quantum Monte Carlo approach to fermion-boson models}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-157643}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {This work deals with the development and application of novel quantum Monte Carlo methods to simulate fermion-boson models. Our developments are based on the path-integral formalism, where the bosonic degrees of freedom are integrated out exactly to obtain a retarded fermionic interaction. We give an overview of three methods that can be used to simulate retarded interactions. In particular, we develop a novel quantum Monte Carlo method with global directed-loop updates that solves the autocorrelation problem of previous approaches and scales linearly with system size. We demonstrate its efficiency for the Peierls transition in the Holstein model and discuss extensions to other fermion-boson models as well as spin-boson models. Furthermore, we show how with the help of generating functionals bosonic observables can be recovered directly from the Monte Carlo configurations. This includes estimators for the boson propagator, the fidelity susceptibility, and the specific heat of the Holstein model. The algorithmic developments of this work allow us to study the specific heat of the spinless Holstein model covering its entire parameter range. Its key features are explained from the single-particle spectral functions of electrons and phonons. In the adiabatic limit, the spectral properties are calculated exactly as a function of temperature using a classical Monte Carlo method and compared to results for the Su-Schrieffer-Heeger model.}, subject = {Monte-Carlo-Simulation}, language = {en} } @phdthesis{Mekala2019, author = {Mekala, SubbaRao}, title = {Generation of cardiomyocytes from vessel wall-resident stem cells}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-146046}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {Myocardial infarction (MI) is a major cause of health problems and is among the leading deadly ending diseases. Accordingly, regenerating functional myocardial tissue and/or cardiac repair by stem cells is one of the most desired aims worldwide. Indeed, the human heart serves as an ideal target for regenerative intervention, because the capacity of the adult myocardium to restore itself after injury or infarct is limited. Thus, identifying new sources of tissue resident adult stem or progenitor cells with cardiovascular potential would help to establish more sophisticated therapies in order to either prevent cardiac failure or to achieve a functional repair. Ongoing research worldwide in this field is focusing on a) induced pluripotent stem (iPS) cells, b) embryonic stem (ES) cells and c) adult stem cells (e. g. mesenchymal stem cells) as well as cardiac fibroblasts or myofibroblasts. However, thus far, these efforts did not result in therapeutic strategies that were transferable into the clinical management of MI and heart failure. Hence, identifying endogenous and more cardiac-related sources of stem cells capable of differentiating into mature cardiomyocytes would open promising new therapeutic opportunities. The working hypothesis of this thesis is that the vascular wall serves as a niche for cardiogenic stem cells. In recent years, various groups have identified different types of progenitors or mesenchymal stem cell-like cells in the adventitia and sub-endothelial zone of the adult vessel wall, the so called vessel wall-resident stem cells (VW-SCs). Considering the fact that heart muscle tissue contains blood vessels in very high density, the physiological relevance of VW-SCs for the myocardium can as yet only be assumed. The aim of the present work is to study whether a subset of VW-SCs might have the capacity to differentiate into cardiomyocyte-like cells. This assumption was challenged using adult mouse aorta-derived cells cultivated in different media and treated with selected factors. The presented results reveal the generation of spontaneously beating cardiomyocyte-like cells using specific media conditions without any genetic manipulation. The cells reproducibly started beating at culture days 8-10. Further analyses revealed that in contrast to several publications reporting the Sca-1+ cells as cardiac progenitors the Sca-1- fraction of aortic wall-derived VW-SCs reproducibly delivered beating cells in culture. Similar to mature cardiomyocytes the beating cells developed sarcomeric structures indicated by the typical cross striated staining pattern upon immunofluorescence analysis detecting α-sarcomeric actinin (α-SRA) and electron microscopic analysis. These analyses also showed the formation of sarcoplasmic reticulum which serves as calcium store. Correspondingly, the aortic wall-derived beating cardiomyocyte-like cells (Ao-bCMs) exhibited calcium oscillations. This differentiation seems to be dependent on an inflammatory microenvironment since depletion of VW-SC-derived macrophages by treatment with clodronate liposomes in vitro stopped the generation of Ao bCMs. These locally generated F4/80+ macrophages exhibit high levels of VEGF (vascular endothelial growth factor). To a great majority, VW-SCs were found to be positive for VEGFR-2 and blocking this receptor also stopped the generation VW-SC-derived beating cells in vitro. Furthermore, the treatment of aortic wall-derived cells with the ß-receptor agonist isoproterenol or the antagonist propranolol resulted in a significant increase or decrease of beating frequency. Finally, fluorescently labeled aortic wall-derived cells were implanted into the developing chick embryo heart field where they became positive for α-SRA two days after implantation. The current data strongly suggest that VW-SCs resident in the vascular adventitia deliver both progenitors for an inflammatory microenvironment and beating cells. The present study identifies that the Sca-1- rather than Sca-1+ fraction of mouse aortic wall-derived cells harbors VW-SCs differentiating into cardiomyocyte-like cells and reveals an essential role of VW-SCs-derived inflammatory macrophages and VEGF-signaling in this process. Furthermore, this study demonstrates the cardiogenic capacity of aortic VW-SCs in vivo using a chimeric chick embryonic model.}, subject = {Herzmuskelzelle}, language = {en} } @article{SuessWehnerDostaletal.2019, author = {S{\"u}ß, Jasmin and Wehner, Johannes G. and Dost{\´a}l, Jakub and Engel, Volker and Brixner, Tobias}, title = {Mapping of exciton-exciton annihilation in a molecular dimer via fifth-order femtosecond two-dimensional spectroscopy}, series = {Journal of Physical Chemistry Letters}, volume = {150}, journal = {Journal of Physical Chemistry Letters}, number = {10}, doi = {10.1063/1.5086151}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-178420}, pages = {104304}, year = {2019}, abstract = {We present a theoretical study on exciton-exciton annihilation (EEA) in a molecular dimer. This process is monitored using a fifth-order coherent two-dimensional (2D) spectroscopy as was recently proposed by Dost{\´a}l et al. [Nat. Commun. 9, 2466 (2018)]. Using an electronic three-level system for each monomer, we analyze the different paths which contribute to the 2D spectrum. The spectrum is determined by two entangled relaxation processes, namely, the EEA and the direct relaxation of higher lying excited states. It is shown that the change of the spectrum as a function of a pulse delay can be linked directly to the presence of the EEA process.}, subject = {Exziton}, language = {en} } @unpublished{SuessWehnerDostaletal.2019, author = {S{\"u}ß, Jasmin and Wehner, Johannes G. and Dost{\´a}l, Jakub and Engel, Volker and Brixner, Tobias}, title = {Mapping of exciton-exciton annihilation in a molecular dimer via fifth-order femtosecond two-dimensional spectroscopy}, series = {Journal of Physical Chemistry Letters}, journal = {Journal of Physical Chemistry Letters}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-178482}, year = {2019}, abstract = {We present a theoretical study on exciton-exciton annihilation (EEA) in a molecular dimer. This process is monitored using a fifth-order coherent two-dimensional (2D) spectroscopy as was recently proposed by Dost{\´a}l et al. [Nat. Commun. 9, 2466 (2018)]. Using an electronic three-level system for each monomer, we analyze the different paths which contribute to the 2D spectrum. The spectrum is determined by two entangled relaxation processes, namely, the EEA and the direct relaxation of higher lying excited states. It is shown that the change of the spectrum as a function of a pulse delay can be linked directly to the presence of the EEA process.}, subject = {Exziton}, language = {en} } @phdthesis{Schmithausen2019, author = {Schmithausen, Patrick Alexander Gerhard}, title = {Three-dimensional fluorescence image analysis of megakaryocytes and vascular structures in intact bone}, doi = {10.25972/OPUS-17854}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-178541}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {The thesis provides insights in reconstruction and analysis pipelines for processing of three-dimensional cell and vessel images of megakaryopoiesis in intact murine bone. The images were captured in a Light Sheet Fluorescence Microscope. The work presented here is part of Collaborative Research Centre (CRC) 688 (project B07) of the University of W{\"u}rzburg, performed at the Rudolf-Virchow Center. Despite ongoing research within the field of megakaryopoiesis, its spatio-temporal pattern of megakaryopoiesis is largely unknown. Deeper insight to this field is highly desirable to promote development of new therapeutic strategies for conditions related to thrombocytopathy as well as thrombocytopenia. The current concept of megakaryopoiesis is largely based on data from cryosectioning or in vitro studies indicating the existence of spatial niches within the bone marrow where specific stages of megakaryopoiesis take place. Since classic imaging of bone sections is typically limited to selective two-dimensional views and prone to cutting artefacts, imaging of intact murine bone is highly desired. However, this has its own challenges to meet, particularly in image reconstruction. Here, I worked on processing pipelines to account for irregular specimen staining or attenuation as well as the extreme heterogeneity of megakaryocyte morphology. Specific challenges for imaging and image reconstruction are tackled and solution strategies as well as remaining limitations are presented and discussed. Fortunately, modern image processing and segmentation strongly benefits from continuous advances in hardware as well as software-development. This thesis exemplifies how a combined effort in biomedicine, computer vision, data processing and image technology leads to deeper understanding of megakaryopoiesis. Tailored imaging pipelines significantly helped elucidating that the large megakaryocytes are broadly distributed throughout the bone marrow facing a surprisingly dense vessel network. No evidence was found for spatial niches in the bone marrow, eventually resulting in a revised model of megakaryopoiesis.}, subject = {Megakaryozytopoese}, language = {en} } @phdthesis{Wistlich2019, author = {Wistlich, Laura}, title = {NCO-sP(EO-stat-PO) as functional additive for biomaterials' development}, doi = {10.25972/OPUS-17836}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-178365}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {The aim of this thesis was the application of the functional prepolymer NCO-sP(EO-stat-PO) for the development of new biomaterials. First, the influence of the star-shaped polymers on the mechanical properties of biocements and bone adhesives was investigated. 3-armed star-shaped macromers were used as an additive for a mineral bone cement, and the influence on the mechanical properties was studied. Additionally, a previously developed bone adhesive was examined regarding cytocompatibility. The second topic was the examination of novel functionalization steps which were performed on the surface of electrospun fibers modified with NCO-sP(EO-stat-PO). This established method of functionalizing electrospun meshes was advanced regarding the modification with proteins which was then demonstrated in a biological application. Two different kinds of antibodies were immobilized on the fiber surface in a consecutive manner and the influence of these proteins on the cell behavior was investigated. The final topic involved the quantification of surface-bound peptide sequences. By functionalization of the peptides with the UV-reactive molecule 2-mercaptopyridine it was possible to quantify this compound via UV measurements by cleavage of disulfide bridges and indirectly draw conclusions about the number of immobilized peptides. In the field of mineral biocements and bone adhesives, NCO-sP(EO-stat-PO) was able to influence the setting behavior and mechanical performance of mineral bone cements based on calcium phosphate chemistry. The addition of NCO-sP(EO-stat-PO) resulted in a pseudo-ductile fracture behavior due to the formation of a hydrogel network in the cement, which was then mineralized by nanosized hydroxyapatite crystals following cement setting. Accordingly, a commercially available aluminum silicate cement from civil engineering could be modified. In addition, it could be shown that the use of NCO-sP(EO-stat-PO) is beneficial for adjusting specific material properties of bone adhesives. Here, the crosslinking behavior of the prepolymer in an aqueous medium was exploited to form an interpenetrating network (IPN) together with a photochemically curing poly(ethylene glycol) dimethacrylate (PEGDMA) matrix. This could be used for the development of a bone adhesive with an improved adhesion to bone in a wet environment. The developed bone adhesive was further investigated in terms of possible influences of the initiator systems. In addition, the material system was tested for cytocompatibility by using different cell lines. Moreover, the preparation of electrospun fiber meshes via solution electrospinning consisting of poly(lactide-co-glycolide) (PLGA) as a backbone polymer and NCO-sP(EO-stat-PO) as functional additive is an established method for the application of the meshes as a replacement of the native extracellular matrix (ECM). In general, these fibers reveal diameters in the nanometer range, are protein and cell repellent due to the hydrophilic properties of the prepolymer and show a specific biofunctionalization by immobilization of peptide sequences. Here, the isocyanate groups presented on the fiber surface after electrospinning were used to carry out various functionalization steps, while retaining the properties of protein and cell repellency. The modification of the electrospun fibers involved the immobilization of analogs or antagonists of tumor necrosis factor (TNF) and the indirect detection of these by interaction with a light-producing enzyme. Here, a multimodal modification of the fiber surface with RGD to mediate cell adhesion and two different antibodies could be achieved. After culturing the cell line HT1080, the pro- or anti-inflammatory response of cells could be detected by IL-8 specific ELISA measurements. Furthermore, the quantification of molecules on the surface of electrospun fibers was investigated. It was tested whether the detection by means of super-resolution microscopy would be possible. Therefore, experiments were performed with short amino acid sequences such as RGD for quantification by fluorescence microscopy. Based on earlier results, in which a UV-spectrometrically active molecule was used to detect the quantification of RGD, it was shown that short peptides can also be quantified in a small scale on flat functional substrates (2D) such as NCO-sP(EO-stat-PO) hydrogel coatings, and modified electrospun fibers produced from PLGA and NCO-sP(EO-stat-PO) (3D). In addition, a collagen sequence was used to prove that a successful quantification can be carried out as well for longer peptide chains. These studies have revealed that NCO-sP(EO-stat-PO) can serve as a functional additive for many applications and should be considered for further studies on the development of novel biomaterials. The rapid crosslinking reaction, the resulting hydrogel formation and the biocompatibility are to be mentioned as positive properties, which makes the prepolymer interesting for future applications.}, subject = {Sternpolymere}, language = {en} } @phdthesis{Kress2019, author = {Kreß, Sebastian}, title = {Development and proof of concept of a biological vascularized cell-based drug delivery system}, doi = {10.25972/OPUS-17865}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-178650}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {A major therapeutic challenge is the increasing incidence of chronic disorders. The persistent impairment or loss of tissue function requires constitutive on-demand drug availability optimally achieved by a drug delivery system ideally directly connected to the blood circulation of the patient. However, despite the efforts and achievements in cell-based therapies and the generation of complex and customized cell-specific microenvironments, the generation of functional tissue is still unaccomplished. This study demonstrates the capability to generate a vascularized platform technology to potentially overcome the supply restraints for graft development and clinical application with immediate anastomosis to the blood circulation. The ability to decellularize segments of the rat intestine while preserving the ECM for subsequent reendothelialization was proven. The reestablishment of a functional arteriovenous perfusion circuit enabled the supply of co-cultured cells capable to replace the function of damaged tissue or to serve as a drug delivery system. During in vitro studies, the applicability of the developed miniaturized biological vascularized scaffold (mBioVaSc-TERM®) was demonstrated. While indicating promising results in short term in vivo studies, long term implantations revealed current limitations for the translation into clinical application. The gained insights will impact further improvements of quality and performance of this promising platform technology for future regenerative therapies.}, subject = {Vaskularisation}, language = {en} } @phdthesis{Ruecker2019, author = {R{\"u}cker, Christoph}, title = {Development of a prevascularized bone implant}, doi = {10.25972/OPUS-17886}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-178869}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {The skeletal system forms the mechanical structure of the body and consists of bone, which is hard connective tissue. The tasks the skeleton and bones take over are of mechanical, metabolic and synthetic nature. Lastly, bones enable the production of blood cells by housing the bone marrow. Bone has a scarless self-healing capacity to a certain degree. Injuries exceeding this capacity caused by trauma, surgical removal of infected or tumoral bone or as a result from treatment-related osteonecrosis, will not heal. Critical size bone defects that will not heal by themselves are still object of comprehensive clinical investigation. The conventional treatments often result in therapies including burdening methods as for example the harvesting of autologous bone material. The aim of this thesis was the creation of a prevascularized bone implant employing minimally invasive methods in order to minimize inconvenience for patients and surgical site morbidity. The basis for the implant was a decellularized, naturally derived vascular scaffold (BioVaSc-TERM®) providing functional vessel structures after reseeding with autologous endothelial cells. The bone compartment was built by the combination of the aforementioned scaffold with synthetic β-tricalcium phosphate. In vitro culture for tissue maturation was performed using bioreactor technology before the testing of the regenerative potential of the implant in large animal experiments in sheep. A tibia defect was treated without the anastomosis of the implant's innate vasculature to the host's circulatory system and in a second study, with anastomosis of the vessel system in a mandibular defect. While the non-anastomosed implant revealed a mostly osteoconductive effect, the implants that were anastomosed achieved formation of bony islands evenly distributed over the defect. In order to prepare preconditions for a rapid approval of an implant making use of this vascularization strategy, the manufacturing of the BioVaSc-TERM® as vascularizing scaffold was adjusted to GMP requirements.}, subject = {Tissue Engineering}, language = {en} } @phdthesis{Kirilmaz2019, author = {Kirilmaz, Ozan Seyitali}, title = {Thin Film Growth and Characterization of the Transition Metal Oxides Magnetite and Layered Perovskite Iridates}, doi = {10.25972/OPUS-17891}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-178917}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {This thesis describes the growth and characterization of both the all-oxide heterostructure Fe3O4/ZnO and the spin-orbit coupling driven layered perovskite iridates. As for Fe3O4/ZnO, the 100\% spin-polarized Fe3O4 is a promising spin electrode candidate for spintronic devices. However, the single crystalline ZnO substrates exhibit different polar surface termination which, together with substrate preparation method, can drastically affect the physical properties of Fe3O4/ZnO heterostructures. In this thesis two different methods of substrate preparation were investigated: a previously used in situ method involving sputtering and annealing treatments and a recent ex situ method containing only the annealing procedure. For the latter, the annealing treatment was performed in dry and humid O2 gas flow for the O- and Zn-terminated substrates, respectively, to produce atomically at surfaces as verified by atomic force microscopy(AFM). With these methods, four different ZnO substrates were fabricated and used further for Fe3O4 film growth. Fe3O4 films of 20 nm thickness were successfully grown by reactive molecular beam epitaxy. AFM measurements reveal a higher film surface roughness for the samples with in situ prepared substrates. Moreover, X-ray photoelectron spectroscopy (XPS) measurements indicate significant Zn substitution within the Fe3O4 film for these samples, whereas the samples with ex situ prepared substrates show stoichiometric Fe3O4 films. X-ray diffraction measurements confirm the observations from XPS, revealing additional peaks due to Zn substitution in Fe3O4 films grown on in situ prepared ZnO substrates. Conductivity, as well as magnetometry, measurements show the presence of Zn-doped ferrites in films grown on in situ prepared substrates. Such unintentionally intercalated Zn-doped ferrites dramatically change the electrical and magnetic properties of the films and, therefore, are not preferred in a high-quality heterostructure. X-ray reflectivity (XRR) measurements show for the film grown on ex situ prepared Zn-terminated substrate a variation of film density close to the interface which is also confirmed by transmission electron microscopy (TEM). Using polarized neutron reflectometry, magnetic depth profiles of the films grown on ex situ prepared substrates clearly indicate Fe3O4 layers with reduced magnetization at the interfaces. This result is consistent with earlier observations made by resonant magnetic X-ray reflectometry (RMXR), but in contrast to the findings from XRR and TEM of this thesis. A detailed TEM study of all four samples shows that the sample with ex situ prepared O-terminated substrate has the sharpest interface, whereas those with ex situ prepared Zn-terminated as well as in situ prepared substrates indicate rougher interfaces. STEM-EELS composition profiles of the samples reveal the Zn substitution in the films with in situ prepared substrates and therefore confirm the presence of Zn-doped ferrites. Moreover, a change of the Fe oxidation state of the first Fe layer at the interface which was observed in previous studies done by RMXR, was not verified for the samples with in situ prepared substrates thus leaving the question of a possible presence of the magnetically dead layer open. Furthermore, density functional theory calculations were performed to determine the termination dependent layer sequences which are ...-Zn-O-(interface)-[Fe(octa)-O-Fe(tetra)-Fe(octa)-Fe(tetra)-O]-[...]-... and ...-O-Zn-(interface)-[O-Fe(octa)-O-Fe(tetra)-Fe(octa)-Fe(tetra)]-[...]-... for the samples with O- and Zn-terminated substrates, respectively. Spin density calculations show that in case of O-termination the topmost substrate layers imitate the spin polarization of film layers close to the interface. Here, the first O layer is affected much stronger than the first Zn layer. Due to the strong decrease of this effect toward deeper substrate layers, the substrate surface is supposed to be sensitive to the contiguous spin polarization of the film. Thus, the topmost O layer of the O-terminated substrate could play the most essential role for effective spin injection into ZnO. The 5d transition metal oxides Ba2IrO4 (BIO) and Sr2IrO4 (SIO) are associated with the Ruddlesden-Popper iridate series with phase type "214" (RP{214), and due to the strong spin-orbit coupling belong to the class of Mott insulators. Moreover, they show many similarities of the isostructural high Tc-cuprate superconductors, e.g. crystal structure, magnetism and electronic band structure. Therefore, it is of great interest to activate a potential superconducting phase in (RP{214) iridates. However, only a small number of publications on PLD grown (RP{214) iridates in the literature exists. Furthermore, published data of soft X-ray angle resolved photoemission spectroscopy (SX-ARPES) experiments mainly originate from measurements which were performed on single crystals or MBE grown films of SIO and BIO. In this thesis La-doped SIO films (La0:2Sr1:8IrO4, further referred as LSIO) were used to pursue a potential superconducting phase. A set of characterization methods was used to analyze the quality of the PLD grown BIO, SIO and LSIO films. AFM measurements demonstrate that thick PLD grown(RP{214) iridate films have rougher surfaces, indicating a transition from a 2D layer-bylayer growth (which is demonstrated by RHEED oscillations) to a 3D island-like growth mode. In addition, chemical depth profiling XPS measurements indicate an increase of the O and Ir relative concentrations in the topmost film layers. Constant energy k-space maps and energy distribution curves (EDCs) measured by SX-ARPES show for every grown film only weak energy band dispersions, which are in strong contrast to the results obtained on the MBE grown films and single crystals from the literature. In this thesis, a subsequent TEM study reveals missing SrO layers within the grown films which occur mainly in the topmost layers, confirming the results and suggestions from XPS and SX-ARPES data: the PLD grown films have defects and, therefore, incoherently scatter photoelectrons. Nevertheless, the LSIO film shows small additional spectral weight between the highsymmetry M points close to the Fermi level which can be attributed to quasiparticle states which, in turn, indicates the formation of a Fermi-arc. However, neither conductivity measurements nor valence band analysis via XPS confirm an activation of a superconducting phase or presence of spectral weight of quasiparticle states at the Fermi level in this LSIO film. It is possible that these discovered difficulties in growth are responsible for the low number of SX-ARPES publications on PLD grown (RP{214) iridate films. For further investigations of (RP{214) iridate films by SX-ARPES, their PLD growth recipes have to be improved to create high quality single crystalline films without imperfections.}, subject = {Magnetit}, language = {en} } @phdthesis{Weinhard2019, author = {Weinhard, Alexander}, title = {Managing RFID Implementations - Implications for Managerial Decision Making}, doi = {10.25972/OPUS-17816}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-178161}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {The present dissertation investigates the management of RFID implementations in retail trade. Our work contributes to this by investigating important aspects that have so far received little attention in scientific literature. We therefore perform three studies about three important aspects of managing RFID implementations. We evaluate in our first study customer acceptance of pervasive retail systems using privacy calculus theory. The results of our study reveal the most important aspects a retailer has to consider when implementing pervasive retail systems. In our second study we analyze RFID-enabled robotic inventory taking with the help of a simulation model. The results show that retailers should implement robotic inventory taking if the accuracy rates of the robots are as high as the robots' manufacturers claim. In our third and last study we evaluate the potentials of RFID data for supporting managerial decision making. We propose three novel methods in order to extract useful information from RFID data and propose a generic information extraction process. Our work is geared towards practitioners who want to improve their RFID-enabled processes and towards scientists conducting RFID-based research.}, subject = {RFID}, language = {en} } @phdthesis{Heilos2019, author = {Heilos, Anna}, title = {Mechanistic Insights into the Inhibition of Cathepsin B and Rhodesain with Low-Molecular Inhibitors}, doi = {10.25972/OPUS-17822}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-178228}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {Cysteine proteases play a crucial role in medical chemistry concerning various fields reaching from more common ailments like cancer and hepatitis to less noted tropical diseases, namely the so-called African Sleeping Sickness (Human Arfican Trypanosomiasis). Detailed knowledge about the catalytic function of these systems is highly desirable for drug research in the respective areas. In this work, the inhibition mechanisms of the two cysteine proteases cathepsin B and rhodesain with respectively one low-molecular inhibitor class were investigated in detail, using computational methods. In order to sufficiently describe macromolecular systems, molecular mechanics based methods (MM) and quantum mechanical based method (QM), as well as hybrid methods (QM/MM) combining those two approaches, were applied. For Cathespin B, carbamate-based molecules were investigated as potential inhibitors for the cysteine protease. The results indicate, that water-bridged proton-transfer reactions play a crucial role for the inhibition. The energetically most favoured pathway (according to the calculations) includes an elimination reaction following an E1cB mechanism with a subsequent carbamylation of the active site amino acid cysteine. Nitroalkene derivatives were investigated as inhibitors for rhodesain. The investigation of structurally similar inhibitors showed, that even small steric differences can crucially influence the inhibition potential of the components. Furthermore, the impact of a fluorination of the nitroalkene inhibitors on the inhibition mechanism was investigated. According to experimental data measured from the working group of professor Schirmeister in Mainz, fluorinated nitroalkenes show - in contrast to the unfluorinated compounds - a time dependent inhibition efficiency. The calculations of the systems indicate, that the fluorination impacts the non-covalent interactions of the inhibitors with the enzymatic environment of the enzyme which results in a different inhibition behaviour.}, subject = {Cysteinproteasen}, language = {en} } @phdthesis{Rieger2019, author = {Rieger, Max}, title = {Preconcentration with Metal-Organic Frameworks as adsorbents for airborne Explosives and Hazardous Materials - A study using inverse gas chromatography}, doi = {10.25972/OPUS-17775}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-177750}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {Sensitivity and selectivity remain the central technical requirement for analytical devices, detectors and sensors. Especially in the gas phase, concentrations of threat substances can be very low (e.g. explosives) or have severe effects on health even at low concentrations (e.g. benzene) while it contains many potential interferents. Preconcentration, facilitated by active or passive sampling of air by an adsorbent, followed by thermal desorption, results in these substances being released in a smaller volume, effectively increasing their concentration. Traditionally, a wide range of adsorbents, such as active carbons or porous polymers, are used for preconcentration. However, many adsorbents either show chemical reactions due to active surfaces, serious water retention or high background emission due to thermal instability. Metal-organic frameworks (MOFs) are a hybrid substance class, composed inorganic and organic building blocks, being a special case of coordination polymers containing pores. They can be tailored for specific applications such as gas storage, separation, catalysis, sensors or drug delivery. This thesis is focused on investigating MOFs for their use in thermal preconcentration for airborne detection systems. A pre-screening method for MOF-adsorbate interactions was developed and applied, namely inverse gas chromatography (iGC). Using this pulse chromatographic method, the interaction of MOFs and molecules from the class of explosives and volatile organic compounds was studied at different temperatures and compared to thermal desorption results. In the first part, it is shown that archetype MOFs (HKUST-1, MIL-53 and Fe-BTC) outperformed the state-of-the-art polymeric adsorbent Tenax® TA in nitromethane preconcentration for a 1000 (later 1) ppm nitromethane source. For HKUST-1, a factor of more than 2000 per g of adsorbent was achieved, about 100 times higher than for Tenax. Thereby, a nitromethane concentration of 1 ppb could be increased to 2 ppm. High enrichment is addressed to the specific interaction of the nitro group as by iGC, which was determined by comparing nitromethane's free enthalpy of adsorption with the respective saturated alkane. Also, HKUST-1 shows a similar mode of sorption (enthalpy-entropy compensation) for nitro and saturated alkanes. In the second part, benzene of 1 ppm of concentration was enriched with a similar setup, using 2nd generation MOFs, primarily UiO-66 and UiO-67, under dry and humid (50 \%rH) conditions using constant sampling times. Not any MOF within the study did surpass the polymeric Tenax in benzene preconcentration. This is most certainly due to low sampling times - while Tenax may be highly saturated after 600 s, MOFs are not. For regular UiO-66, four differently synthesized samples showed a strongly varying behavior for dry and humid enrichment which cannot be completely explained. iGC investigations with regular alkanes and BTEX compounds revealed that confinement factors and dispersive surface energy were different for all UiO-66 samples. Using physicochemical parameters from iGC, no unified hypothesis explaining all variances could be developed. Altogether, it was shown that MOFs can replace or add to state-of-the-art adsorbents for the enrichment of specific analytes with preconcentration being a universal sensitivity-boosting concept for detectors and sensors. Especially with iGC as a powerful screening tool, most suitable MOFs for the respective target analyte can be evaluated. iGC can be used for determining "single point" retention volumes, which translate into partition coefficients for a specific MOF × analyte × temperature combination.}, subject = {Metallorganisches Netzwerk}, language = {en} } @phdthesis{Kreter2019, author = {Kreter, Michael}, title = {Targeting the mystery of extragalactic neutrino sources - A Multi-Messenger Window to the Extreme Universe -}, doi = {10.25972/OPUS-17984}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-179845}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {Active Galactic Nuclei (AGNs) are among the most powerful and most intensively studied objects in the Universe. AGNs harbor a mass accreting supermassive black hole (SMBH) in their center and emit radiation throughout the entire electromagnetic spectrum. About 10\% show relativistic particle outflows, perpendicular to the so-called accretion disk, which are known as jets. Blazars, a subclass of AGN with jet orientations close to the line-of-sight of the observer, are highly variable sources from radio to TeV energies and dominate the γ- ray sky. The overall observed broadband emission of blazars is characterized by two distinct emission humps. While the low-energy hump is well described by synchrotron radiation of relativistic electrons, both leptonic processes such as inverse Compton scattering and hadronic processes such as pion-photoproduction can explain the radiation measured in the high-energy hump. Neutrinos, neutral, nearly massless particles, which only couple to the weak force 1 are exclusively produced in hadronic interactions of protons accelerated to relativistic energies. The detection of a high-energy neutrino from an AGN would provide an irrefutable proof of hadronic processes happening in jets. Recently, the IceCube neutrino observatory, located at the South Pole with a total instrumented volume of about one km 3 , provided evidence for a diffuse high-energy neutrino flux. Since the atmospheric neutrino spectrum falls steeply with energy, individual events with the clearest signature of coming from an extraterrestrial origin are those at the highest energies. These events are uniformly distributed over the entire sky and are therefore most likely of extragalactic nature. While the neutrino event (known as "BigBird") with a reconstructed energy of ∼ 2 PeV has already been detected in temporal and spatial agreement with a single blazar in an active phase, still, the chance coincidence for such an association is only on the order of ∼ 5\%. The neutrino flux at these high energies is low, so that even the brightest blazars only yield a Poisson probability clearly below unity. Such a small probability is in agreement with the observed all-sky neutrino flux otherwise, the sky would already be populated with numerous confirmed neutrino point sources. In neutrino detectors, events are typically detected in two different signatures 2 . So-called shower-like electron neutrino events produce a large particle cascade, which leads to a pre- cise energy measurement, but causes a large angular uncertainty. Track-like muon neutrino events, however, only produce a single trace in the detector, leading to a precise localization but poor energy reconstruction. The "BigBird" event was a shower-like neutrino event, tem- porally coincident with an activity phase of the blazar PKS 1424-418, lasting several months. Shower-like neutrino events typically lead to an angular resolution of ∼ 10 ◦ , while track-like events show a localization uncertainty of only ∼ 1 ◦ . Considering the potential detection of a track-like neutrino event in agreement with an activity phase of a single blazar lasting only days would significantly decrease the chance coincidence of such an association. In this thesis, a sample of bright blazars, continuously monitored by Fermi/LAT in the MeV to GeV regime, is considered as potential neutrino candidates. I studied the maximum possible neutrino ex- pectation of short-term blazar flares with durations of days to weeks, based on a calorimetric argumentation. I found that the calorimetric neutrino output of most short-term blazar flares is too small to lead to a substantial neutrino detection. However, for the most extreme flares, Poisson probabilities of up to ∼ 2\% are reached, so that the possibility of associated neutrino detections in future data unblindings of IceCube and KM3NeT seems reasonable. On 22 September 2017, IceCube detected the first track-like neutrino event (named IceCube- 170922A) coincident with a single blazar in an active phase. From that time on, the BL Lac object TXS 0506+056 was subject of an enormous multiwavelength campaign, revealing an en- hanced flux state at the time of the neutrino arrival throughout several different wavelengths. In this thesis, I first studied the long-term flaring behavior of TXS 0506+056, using more than nine years of Fermi/LAT data. I found that the activity phase in the MeV to GeV regime already started in early 2017, months before the arrival of IceCube-170922A. I performed a calorimetric analysis on a 3-day period around the neutrino arrival time and found no sub- stantial neutrino expectation from such a short time range. By computing the calorimetric neutrino prediction for the entire activity phase of TXS 0506+056 since early 2017, a possible association seems much more likely. However, the post-trial corrected chance coincidence for a long-term association between IceCube-170922A and the blazar TXS 0506+056 is on the level of ∼ 3.5 σ, establishing TXS 0506+056 as the most promising neutrino point source candidate in the scientific community. Another way to explain a high-energy neutrino signal without an observed astronomical counterpart, would be the consideration of blazars at large cosmological distances. These high-redshift blazars are capable of generating the observed high-energy neutrino flux, while their γ-ray emission would be efficiently downscattered by Extragalactic Background Light (EBL), making them almost undetectable to Fermi/LAT. High-redshift blazars are impor- tant targets, as they serve as cosmological probes and represent one of the most powerful classes of γ-ray sources in the Universe. Unfortunately, only a small number of such objects could be detected with Fermi/LAT so far. In this thesis, I perform a systematic search for flaring events in high-redshift γ-ray blazars, which long-term flux is just below the sensitiv- ity limit of Fermi/LAT. By considering a sample of 176 radio detected high-redshift blazars, undetected at γ-ray energies, I was able to increase the number of previously unknown γ-ray blazars by a total of seven sources. Especially the blazar 5BZQ J2219-2719, at a distance of z = 3.63 was found to be the most distant new γ-ray source identified within this thesis. In the final part of this thesis, I studied the flaring behavior of bright blazars, previously considered as potential neutrino candidates. While the occurrence of flaring intervals in blazars is of purely statistical nature, I found potential differences in the observed flaring behavior of different blazar types. Blazars can be subdivided into BL Lac (BLL) objects, Flat-Spectrum Radio Quasar (FSRQ) and Blazars Candidates of Uncertain type (BCU). FSRQs are typ- ically brighter than BL Lac or BCU type blazars, thus longer flares and more complicated substructures can be resolved. Although BL Lacs and BCUs are capable of generating signifi- cant flaring episodes, they are often identified close to the detection threshold of Fermi/LAT. Long-term outburst periods are exclusively observed in FSRQs, while BCUs can still con- tribute with flare durations of up to ten days. BL Lacs, however, are only detected in flaring states of less than four days. FSRQs are bright enough to be detected multiple times with time gaps between two subsequent flaring intervals ranging between days and months. While BL Lacs can show time gaps of more than 100 days, BCUs are only observed with gaps up to 20 days, indicating that these objects are detected only once in the considered time range of six years. The newly introduced parameter "Boxyness" describes the averaged flux in an identified flaring state and does highly depend on the shape of the considered flare. While perfectly box-like flares (flares which show a constant flux level over the entire time range) correspond to an averaged flux which is equal the maximum flare amplitude, irregular shaped flares generate a smaller averaged flux. While all blazar types show perfectly box-shaped daily flares, BL Lacs and BCUs are typically not bright enough to be resolved for multiple days. The work presented in this thesis illustrates the challenging state of multimessenger neu- trino astronomy and the demanding hunt for the first extragalactic neutrino point sources. In this context, this work discusses the multiwavelength emission behavior of blazars as a promising class of neutrino point sources and allows for predictions of current and future source associations}, language = {en} } @phdthesis{Heck2019, author = {Heck, Johannes}, title = {Role of cyclase-associated protein 2 in platelet function and description of an inherited macrothrombocytopenia}, doi = {10.25972/OPUS-17996}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-179968}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {Cyclase-associated protein (CAP)2 is an evolutionarily highly conserved actin-binding protein implicated in striated muscle development, carcinogenesis, and wound healing in mammals. To date, the presence as well as the putative role(s) of CAP2 in platelets, however, remain unknown. Therefore, mice constitutively lacking CAP2 (Cap2gt/gt mice) were examined for platelet function. These studies confirmed the presence of both mammalian CAP isoforms, CAP1 and CAP2, in platelets. CAP2-deficient platelets were slightly larger than WT controls and displayed increased GPIIbIIIa activation and P-selectin recruitment in response to the (hem)ITAM-specific agonists collagen-related peptide and rhodocytin. However, spreading of CAP2-deficient platelets on a fibrinogen matrix was unaltered. In conclusion, the functionally redundant CAP1 isoform may compensate for the lack of CAP2 in murine platelets. Moreover, the studies presented in this thesis unveiled a severe macrothrombocytopenia that occurred independently of the targeted Cap2 allele and which was preliminarily termed orphan (orph). Crossing of the respective mice to C57BL/6J wild-type animals revealed an autosomal recessive inheritance. Orph mice were anemic and developed splenomegaly as well as BM fibrosis, suggesting a general hematopoietic defect. Strikingly, BM MKs of orph mice demonstrated an aberrant morphology and appeared to release platelets ectopically into the BM cavity, thus pointing to defective thrombopoiesis as cause for the low platelet counts. Orph platelets exhibited marked activation defects and spread poorly on fibrinogen. The unaltered protein content strongly suggested a defective alpha-granule release to account for the observed hyporesponsiveness. In addition, the cytoskeleton of orph platelets was characterized by disorganized microtubules and accumulations of filamentous actin. However, further experiments are required to elucidate the activation defects and cytoskeletal abnormalities in orph platelets. Above all, the gene mutation responsible for the phenotype of orph mice needs to be determined by next-generation sequencing in order to shed light on the underlying genetic and mechanistic cause.}, subject = {Thrombozyt}, language = {en} } @phdthesis{Elsaesser2019, author = {Els{\"a}sser, Sebastian}, title = {Lattice dynamics and spin-phonon coupling in the multiferroic oxides Eu(1-x)Ho(x)MnO3 and ACrO2}, doi = {10.25972/OPUS-17971}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-179719}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {The focus of this thesis is the investigation of the lattice dynamics and the coupling of magnetism and phonons in two different multiferroic model systems. The first system, which constitutes the main part in this work is the system of multiferroic manganites RMnO\$_{3}\$, in particular Eu\$_{1-x}\$Ho\$_{x}\$MnO\$_{3}\$ with \$0 \le x \le 0.5\$. Its cycloidal spin arrangement leads to the emergence of the ferroelectric polarization via the inverse Dzyaloshinskii-Moriya interaction. This system is special among RMnO\$_{3}\$ as with increasing Ho content \$x\$, Eu\$_{1-x}\$Ho\$_{x}\$MnO\$_{3}\$ does not only become multiferroic, but due to the exchange interaction with the magnetic Ho-ion, the spin cycloid (and with it the electric polarization) is also flipped for higher Ho contents. This makes it one of the first compounds, where the cycloidal reorientation happens spontaneously, rather than with the application of external fields. On the other hand, there is the delafossite ACrO\$_{2}\$ system. Here, due to symmetry reasons, the spin-spiral pattern can not induce the polarization according to the inverse Dzyaloshinskii-Moriya interaction mechanism. Instead, it is thought that another way of magnetoelectric coupling is involved, which affects the charge distribution in the \$d-p\$ hybridized orbitals of the bonds. The lattice vibrations as well as the quasi-particle of the multiferroic phase, the electromagnon, are studied by Raman spectroscopy. Lattice vibrations like the B\$_{3g}\$(1) mode, which involves vibrations of the Mn-O-Mn bonds modulate the exchange interaction and serve as a powerful tool for the investigation of magnetic correlations effects with high frequency accuracy. Raman spectroscopy acts as a local probe as even local magnetic correlations directly affect the phonon vibration frequency, revealing coupling effects onto the lattice dynamics even in the absence of global magnetic order. By varying the temperature, the coupling is investigated and unveils a renormalization of the phonon frequency as the magnetic order develops. For Eu\$_{1-x}\$Ho\$_{x}\$MnO\$_{3}\$, the analysis of this spin-induced phonon frequency renormalization enables the quantitative determination of the in-plane spin-phonon coupling strengths. This formalism, introduced by Granado et al., is extended here to evaluate the out-of-plane coupling strengths, which is enabled by the identification of a previously elusive feature as a vibrational mode. The complete picture is obtained by studying the lattice- and electromagnon dynamics in the magnetic field. Further emphasis is put towards the development of the cycloidal spin structure and correlations with temperature. A new model of describing the temperature-dependent behavior of said spin correlations is proposed and can consistently explain ordering phenomena which were until now unaddressed. The results are underscored with Monte Carlo based simulations of the spin dynamics with varying temperature. Furthermore, a novel effect of a tentative violation of the Raman selection rules in Eu\$_{1-x}\$Ho\$_{x}\$MnO\$_{3}\$ was discovered. While the phonon modes can be separated and identified by their symmetry by choosing appropriate polarization configurations, in a very narrow temperature range, Eu\$_{1-x}\$Ho\$_{x}\$MnO\$_{3}\$ shows an increase of phonon intensities in polarization configurations where they should be forbidden. This is interpreted as a sign of local disorder, caused by 90° domain walls and could be explained within the model framework. This course of action is followed with the material system of delafossites ACrO\$_{2}\$. Being a relatively new class of multiferroic materials, the investigations on ACrO\$_{2}\$ are also of characterizing nature. For this, shell model calculations are performed as a reference to compare the vibrational frequencies obtained by the Raman experiments to. A renormalization of the vibrational frequencies is observed in this system as well and systematically analyzed across the sample series of \textit{A}=Cu, Pd and Ag. Eventually, the effect of applying an external magnetic field is studied. A particularly interesting feature specific for CuCrO\$_{2}\$ is a satellite peak which appears at lower temperatures. It is presumably related to a deformation of the lattice and therefore going to be discussed in further detail.}, subject = {Festk{\"o}rperphysik}, language = {en} } @incollection{Schoenbeck2019, author = {Sch{\"o}nbeck, Sebastian}, title = {Return to the Fable: Rethinking a Genre Neglected in Animal Studies and Ecocriticism}, series = {Texts, Animals, Environments: Zoopoetics and Ecopoetics}, booktitle = {Texts, Animals, Environments: Zoopoetics and Ecopoetics}, publisher = {Rombach Druck- und Verlagshaus}, address = {Freiburg i. Br.}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-177966}, publisher = {Universit{\"a}t W{\"u}rzburg}, pages = {111-125}, year = {2019}, abstract = {No abstract available.}, language = {en} } @phdthesis{Krebs2019, author = {Krebs, Oliver}, title = {Essays on International Trade, Regional Change and Structural Growth}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-174954}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {Diese Dissertationsschrift befasst sich mit der {\"o}konomischen Bedeutung von Regionen innerhalb Deutschlands. Regionen sind dabei aus zweierlei Sicht ein wichtiges Untersuchungsobjekt. Dies gilt zum Einen, da makro{\"o}konomische Schocks {\"u}ber Regionen Hinweg zu substantiell unterschiedlichen Effekten f{\"u}hren. Dringliche Themen wie die Robotisierung und die Verwendung k{\"u}nstlicher Intelligenz, der Brexit, oder US-amerikanische Z{\"o}lle werden W{\"u}rzburg anders Beeinflussen als Berlin und implizieren somit unterschiedliche Interessen bei der jeweiligen Bev{\"o}lkerung, den jeweiligen Firmen und Politikern. Zum Anderen k{\"o}nnen regionale {\"o}konomische Schocks wie Erfindungen, Insolvenzen, oder die Ansiedlung eines bedeutenden Betriebs durch Handel und „input-output" Verbindungen zu Schocks von makro{\"o}konomischer Bedeutung anwachsen. Allerdings sind regionale Heterogenit{\"a}ten innerhalb Deutschlands und die komplizierten Netzwerke verschiedenster Art zwischen Regionen weder gut dokumentiert noch ausreichenden verstanden. Dies gilt insbesondere auch f{\"u}r lokale Arbeitsm{\"a}rkte welche ein Kerninteressen der Regionalpolitik darstellen und ebenfalls von bedeutenden Heterogenit{\"a}ten gepr{\"a}gt sind. Die vorliegende Arbeit analysiert und quantifiziert das regionale Produktions- und Handelsnetzwerk innerhalb Deutschlands und untersucht welche Aspekte f{\"u}r die beobachteten breiten Unterschiede bei der Anpassung lokaler Arbeitsm{\"a}rkte an {\"o}konomische Schocks verantwortlich sind. Der erste Aufsatz, „How deep is your love? A quantitative spatial analysis of the transatlantic trade partnership", setzt sich dabei mit der Prognose von Effekten eines konkreten Schocks in Form des vorgeschlagenen transatlantischen Freihandelsabkommens (TTIP) auseinander. Die Arbeit findet einerseits nur m{\"a}ßige Wohlfahrtseffekte, sowohl f{\"u}r die Vereinigten Staaten als auch f{\"u}r die Europ{\"a}ische Union und Drittstaaten, andererseits zeigt sie, dass alle Landkreise in Deutschland Wohlfahrtsgewinne erzielen und es somit zumindest regional keine Verlierer des Abkommens geben w{\"u}rde. Der zweite Aufsatz, „RIOTs in Germany - Constructing an interregional input-output table for Germany", nutzt einen einzigartigen Datensatz von G{\"u}tersendungen per LKW, Zug oder Schiff zwischen allen 402 deutschen Landkreisen im Jahr 2010 um, mit Hilfe weiterer Daten, eine interregionale input-output Tabelle f{\"u}r Deutschland zu erstellen und die Verflechtungen lokaler M{\"a}rkte zu untersuchen. Der dritte Aufsatz, „On the Road (Again): Commuting and Local Employment Elasticities in Germany", analysiert die Bedeutung des Pendelns f{\"u}r lokale Arbeitsm{\"a}rkte. Es zeigt sich dabei, dass Pendelstr{\"o}me eine zentrale Marge bei der Anpassung an lokale Schocks darstellen und dass deutsche Arbeitsm{\"a}rkte wesentlich flexibler und anpassungsf{\"a}higer sind als weitl{\"a}ufig angenommen. Der vierte Aufsatz, „Shocking Germany - A spatial analysis of German regional labor markets", integriert Arbeitslosigkeit in die zur Prognose lokaler Schocks verwendeten quantitativen Modelle. Dadurch kann er den Effekte von durch Schocks ausgel{\"o}ster Migration innerhalb Deutschland auf lokale Arbeitsm{\"a}rkte quantifizieren. Es zeigt sich, dass die {\"A}nderung lokaler Arbeitslosigkeitsraten als Antwort auf lokale Produktivit{\"a}tsschocks durch Migration im Durchschnitt um 70 Prozent ged{\"a}mpft wird. Strukturelle Anpassung f{\"u}hren langfristig zu einer im Vergleich wesentliche geringeren {\"A}nderung dieser Raten.}, subject = {Außenhandel}, language = {en} } @phdthesis{Gutmann2019, author = {Gutmann, Marcus}, title = {Functionalization of cells, extracellular matrix components and proteins for therapeutic application}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-170602}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {Glycosylation is a biochemical process leading to the formation of glycoconjugates by linking glycans (carbohydrates) to proteins, lipids and various small molecules. The glycans are formed by one or more monosaccharides that are covalently attached, thus offering a broad variety depending on their composition, site of glycan linkage, length and ramification. This special nature provides an exceptional and fine tunable possibility in fields of information transfer, recognition, stability and pharmacokinetic. Due to their intra- and extracellular omnipresence, glycans fulfill an essential role in the regulation of different endogenous processes (e.g. hormone action, immune surveillance, inflammatory response) and act as a key element for maintenance of homeostasis. The strategy of metabolic glycoengineering enables the integration of structural similar but chemically modified monosaccharide building blocks into the natural given glycosylation pathways, thereby anchoring them in the carbohydrate architecture of de novo synthesized glycoconjugates. The available unnatural sugar molecules which are similar to endogenous sugar molecules show minimal perturbation in cell function and - based on their multitude functional groups - offer the potential of side directed coupling with a target substance/structure as well as the development of new biological properties. The chemical-enzymatic strategy of glycoengineering provides a valuable complement to genetic approaches. This thesis primarily focuses on potential fields of application for glycoengineering and its further use in clinic and research. The last section of this work outlines a genetic approach, using special Escherichia coli systems, to integrate chemically tunable amino acids into the biosynthetic pathway of proteins, enabling specific and site-directed coupling with target substances. With the genetic information of the methanogen archaea, Methanosarcina barkeri, the E. coli. system is able to insert a further amino acid, the pyrrolysine, at the ribosomal site during translation of the protein. The natural stop-codon UAG (amber codon) is used for this newly obtained proteinogenic amino acid. Chapter I describes two systems for the integration of chemically tunable monosaccharides and presents methods for characterizing these systems. Moreover, it gives a general overview of the structure as well as intended use of glycans and illustrates different glycosylation pathways. Furthermore, the strategy of metabolic glycoengineering is demonstrated. In this context, the structure of basic building blocks and the epimerization of monosaccharides during their metabolic fate are discussed. Chapter II translates the concept of metabolic glycoengineering to the extracellular network produced by fibroblasts. The incorporation of chemically modified sugar components in the matrix provides an innovative, elegant and biocompatible method for site-directed coupling of target substances. Resident cells, which are involved in the de novo synthesis of matrices, as well as isolated matrices were characterized and compared to unmodified resident cells and matrices. The natural capacity of the matrix can be extended by metabolic glycoengineering and enables the selective immobilization of a variety of therapeutic substances by combining enzymatic and bioorthogonal reaction strategies. This approach expands the natural ability of extracellular matrix (ECM), like the storage of specific growth factors and the recruitment of surface receptors along with synergistic effects of bound substances. By the selection of the cell type, the production of a wide range of different matrices is possible. Chapter III focuses on the target-oriented modification of cell surface membranes of living fibroblast and human embryonic kidney cells. Chemically modified monosaccharides are inserted by means of metabolic glycoengineering and are then presented on the cell surface. These monosaccharides can later be covalently coupled, by "strain promoted azide-alkyne cycloaddition" (SPAAC) and/or "copper(I)-catalyzed azide-alkyne cycloaddition" (CuAAC), to the target substance. Due to the toxicity of the copper catalysator in the CuAAC, cytotoxicity analyses were conducted to determine the in vivo tolerable range for the use of CuAAC on living cell systems. Finally, the efficacy of both bioorthogonal reactions was compared. Chapter IV outlines two versatile carrier - spacer - payload delivery systems based on an enzymatic cleavable linker, triggered by disease associated protease. In the selection of carrier systems (i) polyethylene glycol (PEG), a well-studied, Food and Drug Administration approved substance and very common tool to increase the pharmacokinetic properties of therapeutic agents, was chosen as a carrier for non-targeting systems and (ii) Revacept, a human glycoprotein VI antibody, was chosen as a carrier for targeting systems. The protease sensitive cleavable linker was genetically inserted into the N-terminal region of fibroblast growth factor 2 (FGF-2) without jeopardizing protein activity. By exchanging the protease sensitive sequence or the therapeutic payload, both systems represent a promising and adaptable approach for establishing therapeutic systems with bioresponsive release, tailored to pre-existing conditions. In summary, by site-specific functionalization of various delivery platforms, this thesis establishes an essential cornerstone for promising strategies advancing clinical application. The outlined platforms ensure high flexibility due to exchanging single or multiple elements of the system, individually tailoring them to the respective disease or target site.}, subject = {Glykosylierung}, language = {en} } @phdthesis{Aboagye2019, author = {Aboagye, Benjamin}, title = {Behavioral and physiologic consequences of inducible inactivation of the \(Tryptophan\) \(hydroxylase\) 2 gene in interaction with early-life adversity}, doi = {10.25972/OPUS-17358}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-173581}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {Disruptions in brain serotonin (5-hydroxytryptamine, 5-HT) signaling pathways have been associated with etiology and pathogenesis of various neuropsychiatric disorders, but specific neural mechanisms of 5-HT function are yet to be fully elucidated. Tryptophan hydroxylase 2 (TPH2) is the rate-limiting enzyme for brain 5-HT synthesis. Therefore, in this study a tamoxifen (Tam)-inducible cre-mediated conditional gene (Tph2) knockout in adult mouse brain (Tph2icKO) has been established to decipher the specific role of brain 5-HT in the regulation of behavior in adulthood. Immunohistochemistry and high-performance liquid chromatography (HPLC) were used first to test the efficacy of Tam-inducible inactivation of Tph2 and consequential reduction of 5-HT in adult mouse brain. Tam treatment resulted in ≥90\% reduction in the number of 5-HT immuno-reactive cells in the anterior raphe nuclei. HPLC revealed a significant reduction in concentration of 5-HT and its metabolite 5-hydroxyindole acetic acid (5-HIAA) in selected brain regions of Tph2icKO, indicating the effectiveness of the protocol used. Second, standard behavioral tests were used to assess whether reduced brain 5-HT concentrations could alter anxiety-, fear- and depressive-like behavior in mice. No altered anxiety- and depressive-like behaviors were observed in Tph2icKO compared to control mice (Tph2CON) in all indices measured, but Tph2icKO mice exhibited intense and sustained freezing during context-dependent fear memory retrieval. Tph2icKO mice also exhibited locomotor hyperactivity in the aversive environments, such as the open field, and consumed more food and fluid than Tph2CON mice. Lastly, the combined effect of maternal separation (MS) stress and adult brain 5-HT depletion on behavior was assessed in male and female mice. Here, MS stress, 5-HT depletion and their interaction elicited anxiety-like behavior in a sex-dependent manner. MS reduced exploratory behavior in both male and female mice. Reduced 5-HT enhanced anxiety in female, but not in male mice. Furthermore, expression of genes related to the 5-HT system and emotionality (Tph2, Htr1a, Htr2a, Maoa and Avpr1a) was assessed by performing a quantitative real-time PCR. In Tph2icKO mice there was a reduction in expression of Tph2 in the raphe nuclei of both male and female mice. Interaction between MS stress and 5-HT deficiency was detected showing increased Htr2a and Maoa expression in raphe and hippocampus respectively of female mice. In male mice, MS stress and 5-HT depletion interaction effects reduced Avpr1a expression in raphe, while the expression of Htr1a, Htr2a and Maoa was differentially altered by 5-HT depletion and MS in various brain regions.}, subject = {Anxiety}, language = {en} } @phdthesis{SchaefergebStichler2019, author = {Sch{\"a}fer [geb. Stichler], Simone}, title = {Thiol-ene Cross-linked Poly(glycidol) / Hyaluronic Acid Based Hydrogels for 3D Bioprinting}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-174713}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {The aim of the work was the development of thiol-ene cross-linked hydrogels based on functionalized poly(glycidol)s (PG) and hyaluronic acid (HA) for extrusion based 3D bioprinting. Additionally, the functionalization of the synthesized PG with peptides and the suitability of these polymers for physically cross-linked gels were investigated, in a proof of principle study in order to demonstrate the versatile use of PG polymers in hydrogel development. First, the precursor polymers of the different hydrogel systems were synthesized. For thiol-ene cross-linked hydogels, linear allyl-functionalized PG (P(AGE-co-G)) and three different thiol-(SH-)functionalized polymers, ester-containing PG-SH (PG SHec), ester-free PG-SH (PG-SHef) and HA-SH were synthesized and analysed, The degree of functionalization of these polymers was adjustable. For physically cross-linked hydrogels, peptide-functionalized PG (P(peptide-co-G)), was synthesized through polymer analogue thiol-ene modification of P(AGE-co-G). Subsequently, thiol-ene cross-linked hydrogels were prepared with the synthesized thiol- and allyl-functionalized polymers. Depending on the origin of the used polymers, two different systems were obtained: on the one hand synthetic hydrogels consisting of PG-SHec/ef and P(AGE-co-G) and on the other hand hybrid gels, consisting of HA-SH and P(AGE-co-G). In synthetic gels, the degradability of the gels was determined by the applied PG-SH. The use of PG-SHec resulted in hydrolytically degradable hydrogels, whereas the cross-linking with PG-SHef resulted in non-degradable gels. The physical properties of these different hydrogel systems were determined by swelling, mechanical and diffusion studies and subsequently compared among each other. In swelling studies the differences of degradable and non-degradable synthetic hydrogels as well as the differences of synthetic compared to hybrid hydrogels were demonstrated. Next, the stiffness and the swelling ratios (SR) of the established hydrogel systems were examined in dependency of different parameters, such as incubation time, polymer concentration and UV irradiation. In general, these measurements revealed the same trends for synthetic and hybrid hydrogels: an increased polymer concentration as well as prolonged UV irradiation led to an increased network density. Moreover, it was demonstrated that the incorporation of additional non-bound HMW HA hampered the hydrogel cross-linking resulting in gels with decreased stiffness and increased SR. This effect was strongly dependent on the amount of additional HMW HA. The diffusion of different molecular weight fluorescein isothiocyanate-dextran (FITC-dextran) through hybrid hydrogels (with/without HMW HA) gave information about the mesh size of these gels. The smallest FITC-dextran (4 kDa) completely diffused through both hydrogel systems within the first week, whereas only 55 \% of 40 kDa and 5-10 \% HMW FITC-dextrans (500 kDa and 2 MDa) could diffuse through the networks. The applicability of synthetic and hybrid hydrogels for cartilage regeneration purpose was investigated through by biological examinations. It was proven that both gels support the survival of embedded human mesenchymal stromal cells (hMSCs) (21/28 d in vitro culture), however, the chondrogenic differentiation was significantly improved in hybrid hydrogels compared to synthetic gels. The addition of non-bound HMW HA resulted in a slightly less distinct chondrogenesis. Lastly the printability of the established hydrogel systems was examined. Therefore, the viscoelastic properties of the hydrogel solutions were adjusted by incorporation of non-bound HMW HA. Both systems could be successfully printed with high resolution and high shape fidelity. The introduction of the double printing approach with reinforcing PCL allowed printing of hydrogel solutions with lower viscosities. As a consequence, the amount of additional HMW HA necessary for printing could be reduced allowing successful printing of hybrid hydrogel solutions with embedded cells. It was demonstrated that the integrated cells survived the printing process with high viability measured after 21 d. Moreover, by this reinforcing technique, robust hydrogel-containing constructs were fabricated. In addition to thiol-ene cross-linked hydrogels, hydrogel cross-linking via ionic interactions was investigated with a hybrid hydrogel based on HMW HA and peptide-functionalized PG. Rheological measurements revealed an increase in the viscosity of a 2 wt.\% HMW HA solution by the addition of peptide-functionalized PG. The increase in viscosity could be attributed to the ionic interactions between the positively charge PG and the negatively charge HMW HA. In conclusion, throughout this thesis thiol-ene chemistry and PG were introduced as promising cross-linking reaction and polymer precursor for the field of biofabrication. Furthermore, the differences of hybrid and synthetic hydrogels as well as chemically and physically cross-linked hydrogels were demonstrated. Moreover, the double printing approach was demonstrated to be a promising tool for the fabrication of robust hydrogel-containing constructs. It opens the possibility of printing hydrogels that were not printable yet, due to too low viscosities.}, subject = {Hyalurons{\"a}ure}, language = {en} } @phdthesis{Njovu2019, author = {Njovu, Henry Kenneth}, title = {Patterns and drivers of herbivore diversity and invertebrate herbivory along elevational and land use gradients at Mt. Kilimanjaro, Tanzania}, doi = {10.25972/OPUS-17254}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-172544}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {This thesis elucidates patterns and drivers of invertebrate herbivory, herbivore diversity, and community-level biomass along elevational and land use gradients at Mt. Kilimanjaro, Tanzania. Chapter I provides background information on the response and predictor variables, study system, and the study design. First, I give an overview of the elevational patterns of species diversity/richness and herbivory published in the literature. The overview illuminates existing debates on elevational patterns of species diversity/richness and herbivory. In connection to these patterns, I also introduce several hypotheses and mechanisms put forward to explain macroecological patterns of species richness. Furthermore, I explain the main variables used to test hypotheses. Finally, I describe the study system and the study design used. Chapter II explores the patterns of invertebrate herbivory and their underlying drivers along extensive elevational and land use gradients on the southern slopes of Mt. Kilimanjaro. I recorded standing leaf herbivory from leaf chewers, leaf miners and gall-inducing insects on 55 study sites located in natural and anthropogenic habitats distributed from 866 to 3060 meters above sea level (m asl) on Mt. Kilimanjaro. Standing leaf herbivory was related to climatic variables [mean annual temperature - (MAT) and mean annual precipitation - (MAP)], net primary productivity (NPP) and plant functional traits (leaf traits) [specific leaf area (SLA), carbon to nitrogen ratio (CN), and nitrogen to phosphorous ratio (NP)]. Results revealed an unimodal pattern of total leaf herbivory along the elevation gradient in natural habitats. Findings also revealed differences in the levels and patterns of herbivory among feeding guilds and between anthropogenic and natural habitats. Changes in NP and CN ratios which were closely linked to NPP were the strongest predictors of leaf herbivory. Our study uncovers the role of leaf nutrient stoichiometry and its linkages to climate in explaining the variation in leaf herbivory along climatic gradients. Chapter III presents patterns and unravels direct and indirect effects of resource (food) abundance (NPP), resource (food) diversity [Functional Dispersion (FDis)], resource quality (SLA, NP, and CN rations), and climate variables (MAT and MAP) on species diversity of phytophagous beetles. Data were collected from 65 study sites located in natural and anthropogenic habitats distributed from 866 to 4550 m asl on the southern slopes of Mt. Kilimanjaro. Sweep net and beating methods were used to collect a total of 3,186 phytophagous beetles representing 21 families and 304 morphospecies. Two groups, weevils (Curculionidae) and leaf beetles (Chrysomelidae) were the largest and most diverse families represented with 898 and 1566 individuals, respectively. Results revealed complex (bimodal) and dissimilar patterns of Chao1-estimated species richness (hereafter referred to as species diversity) along elevation and land use gradients. Results from path analysis showed that temperature and climate-mediated changes in NPP had a significant positive direct and indirect effect on species diversity of phytophagous beetles, respectively. The results also revealed that the effect of NPP (via beetles abundance and diversity of food resources) on species diversity is stronger than that of temperature. Since we found that factors affecting species diversity were intimately linked to climate, I concluded that predicted climatic changes over the coming decades will likely alter the species diversity patterns which we observe today. Chapter IV presents patterns and unravels the direct and indirect effects of climate, NPP and anthropogenic disturbances on species richness and community-level biomass of wild large mammals which represent endothermic organisms and the most important group of vertebrate herbivores. Data were collected from 66 study sites located in natural and anthropogenic habitats distributed from 870 to 4550 m asl on the southern slopes of Mt. Kilimanjaro. Mammals were collected using camera traps and used path analysis to disentangle the direct and indirect effects of climatic variables, NPP, land use, land area, levels of habitat protection and occurrence of domesticated mammals on the patterns of richness and community-level biomass of wild mammals, respectively. Results showed unimodal patterns for species richness and community-level biomass of wild mammals along elevation gradients and that the patterns differed depending on the type of feeding guild. Findings from path analysis showed that net primary productivity and levels of habitat protection had a strong direct effect on species richness and community-level biomass of wild mammals whereas temperature had an insignificant direct effect. Findings show the importance of climate-mediated food resources in determining patterns of species richness of large mammals. While temperature is among key predictors of species richness in several ectotherms, its direct influence in determining species richness of wild mammals was insignificant. Findings show the sensitivity of wild mammals to anthropogenic influences and underscore the importance of protected areas in conserving biodiversity. In conclusion, despite a multitude of data sets on species diversity and ecosystem functions along broad climatic gradients, there is little mechanistic understanding of the underlying causes. Findings obtained in the three studies illustrate their contribution to the scientific debates on the mechanisms underlying patterns of herbivory and diversity along elevation gradients. Results present strong evidence that plant functional traits play a key role in determining invertebrate herbivory and species diversity along elevation gradients and that, their strong interdependence with climate and anthropogenic activities will shape these patterns in future. Additionally, findings from path analysis demonstrated that herbivore diversity, community-level biomass, and herbivory are strongly influenced by climate (either directly or indirectly). Therefore, the predicted climatic changes are expected to dictate ecological patterns, biotic interactions, and energy and nutrient fluxes in terrestrial ecosystems in the coming decades with stronger impacts probably occurring in natural ecosystems. Furthermore, findings demonstrated the significance of land use effects in shaping ecological patterns. As anthropogenic pressure is advancing towards more pristine higher elevations, I advocate conservation measures which are responsive to and incorporate human dimensions to curb the situation. Although our findings emanate from observational studies which have to take several confounding factors into account, we have managed to demonstrate global change responses in real ecosystems and fully established organisms with a wide range of interactions which are unlikely to be captured in artificial experiments. Nonetheless, I recommend additional experimental studies addressing the effect of top-down control by natural enemies on herbivore diversity and invertebrate herbivory in order to deepen our understanding of the mechanisms driving macroecological patterns along elevation gradients.  }, subject = {Species richness}, language = {en} } @phdthesis{Juengst2019, author = {J{\"u}ngst, Tomasz}, title = {Establishing and Improving Methods for Biofabrication}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-173444}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {Die Biofabrikation ist ein junges und sehr dynamisches Forschungsgebiet mit viel Potential. Dieses Potential spiegelt sich unter anderem in den ambitionierten Zielen wieder, die man sich hier gesetzt hat. Wissenschaftler in diesem Gebiet wollen eines Tages beispielsweise funktionale menschliche Gewebe nachbilden, die aus patienteneigenen Zellen bestehen. Diese Gewebe sollen entweder f{\"u}r die Testung neuer Arzneimittel und Therapien oder sogar als Implantate einsetzt werden. Der Schl{\"u}ssel zum Erfolg soll hier die Verwendung automatisierter Prozesse in Verbindung mit innovativen Materialien sein, die es erm{\"o}glichen, die Hierarchie und Funktion des zu ersetzenden nat{\"u}rlichen Gewebes nachbilden. Obwohl in den letzten Jahren große Fortschritte gemacht worden sind, gibt es immer noch H{\"u}rden, die {\"u}berwunden werden m{\"u}ssen. Ziel dieser Arbeit war es deshalb, die derzeit eingeschr{\"a}nkte Auswahl kompatibler Materialien f{\"u}r die Biofabrikation zu erweitern und bereits etablierte Verfahren wie den extrusionsbasierten Biodruck noch besser verstehen zu lernen. Auch neue Verfahren, wie etwa das Melt Electrospinning Writing (MEW) sollten etabliert werden. In Kapitel 3 dieser Arbeit wurde das MEW dazu verwendet, tubul{\"a}re Strukturen zu fertigen, die sich aus Polymerfasern mit einem durchschnittlichen Durchmesser von nur etwa 12 μm zusammensetzen. Die mit Hilfe von Druckluft in Verbindung mit einer hohen elektrischen Spannung aus einer Nadelspitze austretende Polymerschmelze wurde hierbei auf zylinderf{\"o}rmigen Kollektoren mit Durchmessern zwischen 0.5 und 4.8mm gesammelt. Auf diese Weise wurden r{\"o}hrenf{\"o}rmige Faserkonstrukte generiert. Das Hauptaugenmerk lag auf dem Einfluss des Durchmessers, der Rotations- und Translationsbewegung des Kollektors auf die Morphologie der Faserkonstrukte. Hierzu wurden die Fasern erst auf unbewegten Kollektoren mit unterschiedlichen Durchmessern gesammelt und die entstehenden Muster analysiert. Es zeigte sich, dass das Fasermuster mit zunehmendem Durchmesser des Kollektors mehr den symmetrischen Konstrukten mit runder Grundfl{\"a}che glich, die auch von flachen Kollektoren bekannt sind. Je kleiner der Kollektordurchmesser wurde, desto ovaler wurde die Grundfl{\"a}che der Muster, was den Einfluss der Kr{\"u}mmung deutlich machte. In weiteren Experimenten wurden die zylindrischen Kollektoren mit Geschwindigkeiten von 4,2 bis 42 Umdrehungen pro Minute um ihre L{\"a}ngsachse gedreht. Die von flachen Kollektoren bekannten {\"U}berg{\"a}nge der Fasermorphologie konnten auch f{\"u}r runde Kollektoren best{\"a}tigt werden. So {\"a}nderte sich die Morphologie mit zunehmender Geschwindigkeit der Oberfl{\"a}che von einer achterf{\"o}rmigen Gestalt {\"u}ber eine sinusf{\"o}rmige Ausrichtung der Fasern hin zu einer geraden Linie. Der Einfluss des Kollektordurchmessers wurde auch hier deutlich, da sich etwa die Amplitude der bei Rotationsgeschwindigkeiten im Bereich sinusf{\"o}rmiger Ausrichtung abgelegten Fasern mit abnehmendem Radius erh{\"o}hte. Im n{\"a}chsten Schritt wurde neben der Rotation der Kollektoren auch eine Translation induziert. Durch geeignete Kombination von Rotation und Translation konnten Konstrukte mit definiertem Wickelwinkel hergestellt werden. Es zeigte sich, dass die Wiedergabe des vorher kalkulierten Winkels unter Verwendung von Oberfl{\"a}chengeschwindigkeiten, die nahe am {\"U}bergang zur geraden Faserausrichtung waren, am besten war. Im Rahmen dieser Arbeit konnten Winkel zwischen 5 und 60° mit hoher Pr{\"a}zision wiedergegeben werden. Im Falle von sich wiederholenden Mustern konnte auch in Bezug auf die Stapelbarkeit der Fasern aufeinander eine hohe Pr{\"a}zision erreicht werden. Kapitel 4 dieser Arbeit befasste sich mit dem extrusionsbasierten 3D-Druck. Das etabliere Verfahren wurde auf eine bisher wenig untersuchte Materialzusammensetzung von Nanopartikeln-beladenen Hydrogeltinten ausgeweitet. Die Tinte bestand aus einer Kombination von funktionalisierten Polyglyzidolen und einer unmodifizierten langkettingen Hyalurons{\"a}ure. Dieser wurden mesopor{\"o}se Silika-Nanopartikel mit unterschiedlicher Ladung zugesetzt und deren Freisetzung aus gedruckten Konstrukten mit einstellbarer Geometrien untersucht. Da die Hyalurons{\"a}ure selbst negativ geladen ist, wurde erwartet und auch gezeigt, dass aminofunktionalisierte Partikel mit positiver Ladung langsamer freigesetzt werden als carboxylfunktionalisierte Partikel mit negativer Ladung. Interessanterweise {\"a}nderten die Partikel nicht die rheologischen Eigenschaften der Tinte und es konnten Hydrogele, die mit positiv geladenen Partikeln beladen waren, bei den gleichen Druckparametern verdruckt werden, wie Hydrogele, die mit negativ geladenen Partikeln beladen waren. Die guten Druckeigenschaften der Tinten erm{\"o}glichten die pr{\"a}zise Fertigung von Konstrukten mit einer Gr{\"o}ße von 12x12x3mm^3, also von Konstrukten mit bis zu 16 aufeinanderfolgenden Lagen. Die Strangdurchmesser betrugen hierbei 627±31μm und die Verteilung der Partikel innerhalb der Str{\"a}nge war sehr homogen. Zudem konnten auch Strukturen gedruckt werden, bei denen beide Tintenarten, mit positiven und mit negativen Partikeln beladene Hydrogele, in einem Konstrukt kombiniert wurden. Hierbei zeigte sich, dass die Freisetzung der Partikel, die {\"u}ber 6 Wochen hinweg untersucht wurde, auch stark von der Geometrie der zwei-Komponenten-Konstrukte abhing. Insbesondere die Auswirkung des direkten Kontakts zwischen den Komponenten innerhalb eines Konstruktes war hier sehr deutlich. Wurden die Str{\"a}nge {\"u}ber Kreuz aufeinander abgelegt und hatten direkten Kontakt an den Kreuzungspunkten, konnte beobachtet werden, dass die positiv geladenen Partikel aus ihrem System in das mit den negativ geladenen Partikeln wanderten. Wurden die Str{\"a}nge ohne direkten Kontakt parallel nebeneinander abgelegt, wurden die positiv geladenen Partikel in umgebendes Medium freigesetzt, konnten aber selbst nach 6 Wochen nicht in den Str{\"a}ngen mit den negativ geladenen Partikeln nachgewiesen werden. Dies verdeutlicht, dass Geometrie und Ladung der Partikel einen Einfluss auf die Freisetzung der Partikel hatten und sich die Freisetzung der Partikel durch eine geschickte Kombination beider Parameter steuern l{\"a}sst. In Kapitel 5 dieser Arbeit wurde eine neue Materialklasse als Biotinte f{\"u}r den extrusionsbasierten Biodruck untersucht. Bei dem Material handelte es sich um Hydrogele auf Basis rekombinanter Spinnenseidenproteine. Diese konnten ab einer Proteinkonzentration von 3 \%Gew./Vol. ohne die Verwendung von Verdickungsmittel oder anderen Additiven und auch ohne eine nachtr{\"a}gliche Vernetzung verdruckt werden. Sowohl Hydrogele auf Basis des rekombinanten Proteins eADF4(C16) als auch eine mit einer RGD-Sequenz versehene Modifikation (eADF4(C16)-RGD) konnten mit einer hohen Formtreue verdruckt werden. Die RGD-Sequenz zeigte einen positiven Effekt auf das Anhaften von humanen Fibroblasten, die auf gedruckte Konstrukte ausges{\"a}t wurden. Zudem konnten mit Hilfe der Hydrogele auch zellbeladene Konstrukte gefertigt werden. Hierzu wurden die Hydrogele mit einer Zellsuspension so vermengt, dass eine finale Konzentration von 1,2 Millionen Zellen/ml erreicht wurde. Die beladenen Gele wurden verdruckt und es konnte eine {\"U}berlebensrate von 70,1±7,6\% nachgewiesen werden. Das in diesem Kapitel etablierte Materialsystem erm{\"o}glichte zum ersten Mal das Verdrucken lebender Zellen in einer neuen Klasse von Tinten, die weder die Beimengung von Verdickungsmittel noch einen zus{\"a}tzlichen Nachh{\"a}rtungsschritt f{\"u}r die Herstellung zellbeladener stabiler Konstrukte ben{\"o}tigt.}, subject = {3D-Druck}, language = {en} } @article{MagyarWagnerThomasetal.2019, author = {Magyar, Attila and Wagner, Martin and Thomas, Phillip and Malsch, Carolin and Schneider, Reinhard and St{\"o}rk, Stefan and Heuschmann, Peter U and Leyh, Rainer G and Oezkur, Mehmet}, title = {HO-1 concentrations 24 hours after cardiac surgery are associated with the incidence of acute kidney injury: a prospective cohort study}, series = {International Journal of Nephrology and Renovascular Disease}, volume = {12}, journal = {International Journal of Nephrology and Renovascular Disease}, doi = {10.2147/IJNRD.S165308}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-177250}, pages = {9-18}, year = {2019}, abstract = {Background: Acute kidney injury (AKI) is a serious complication after cardiac surgery that is associated with increased mortality and morbidity. Heme oxygenase-1 (HO-1) is an enzyme synthesized in renal tubular cells as one of the most intense responses to oxidant stress linked with protective, anti-inflammatory properties. Yet, it is unknown if serum HO-1 induction following cardiac surgical procedure involving cardiopulmonary bypass (CPB) is associated with incidence and severity of AKI. Patients and methods: In the present study, we used data from a prospective cohort study of 150 adult cardiac surgical patients. HO-1 measurements were performed before, immediately after and 24 hours post-CPB. In univariate and multivariate analyses, the association between HO-1 and AKI was investigated. Results: AKI with an incidence of 23.3\% (35 patients) was not associated with an early elevation of HO-1 after CPB in all patients (P=0.88), whereas patients suffering from AKI developed a second burst of HO-1 24 hours after CBP. In patients without AKI, the HO-1 concentrations dropped to baseline values (P=0.031). Furthermore, early HO-1 induction was associated with CPB time (P=0.046), while the ones 24 hours later lost this association (P=0.219). Conclusion: The association of the second HO-1 burst 24 hours after CBP might help to distinguish between the causality of AKI in patients undergoing CBP, thus helping to adapt patient stratification and management.}, language = {en} } @phdthesis{Kiser2019, author = {Kiser, Dominik Pascal}, title = {Gene x Environment Interactions in Cdh13-deficient Mice: CDH13 as a Factor for Adaptation to the Environment}, doi = {10.25972/OPUS-17959}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-179591}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {Neurodevelopmental disorders, including attention-deficit/hyperactivity disorder (ADHD) and autism spectrum disorder (ASD) are disorders of mostly unknown etiopathogenesis, for which both genetic and environmental influences are expected to contribute to the phenotype observed in patients. Changes at all levels of brain function, from network connectivity between brain areas, over neuronal survival, synaptic connectivity and axonal growth, down to molecular changes and epigenetic modifications are suspected to play a key roles in these diseases, resulting in life-long behavioural changes. Genome-wide association as well as copy-number variation studies have linked cadherin-13 (CDH13) as a novel genetic risk factor to neuropsychiatric and neurodevelopmental disorders. CDH13 is highly expressed during embryonic brain development, as well as in the adult brain, where it is present in regions including the hippocampus, striatum and thalamus (among others) and is upregulated in response to chronic stress exposure. It is however unclear how CDH13 interacts with environmentally relevant cues, including stressful triggers, in the formation of long-lasting behavioural and molecular changes. It is currently unknown how the environment influences CDH13 and which long term changes in behaviour and gene expression are caused by their interaction. This work therefore investigates the interaction between CDH13 deficiency and neonatal maternal separation (MS) in mice with the aim to elucidate the function of CDH13 and its role in the response to early-life stress (ELS). For this purpose, mixed litters of wild-type (Cdh13+/+), heterozygous (Cdh13+/-) and homozygous knockout (Cdh13-/-) mice were maternally separated from postnatal day 1 (PN1) to postnatal day 14 (PN14) for 3 hours each day (180MS; PN1-PN14). In a first series of experiments, these mice were subjected to a battery of behavioural tests starting at 8 weeks of age in order to assess motor activity, memory functions as well as measures of anxiety. Subsequently, expression of RNA in various brain regions was measured using quantitativ real-time polymerase chain reaction (qRT-PCR). A second cohort of mice was exposed to the same MS procedure, but was not behaviourally tested, to assess molecular changes in hippocampus using RNA sequencing. Behavioural analysis revealed that MS had an overall anxiolytic-like effect, with mice after MS spending more time in the open arms of the elevated-plus-maze (EPM) and the light compartment in the light-dark box (LDB). As a notable exception, Cdh13-/- mice did not show an increase of time spent in the light compartment after MS compared to Cdh13+/+ and Cdh13+/- MS mice. During the Barnes-maze learning task, mice of most groups showed a similar ability in learning the location of the escape hole, both in terms of primary latency and primary errors. Cdh13-/- control (CTRL) mice however committed more primary errors than Cdh13-/- MS mice. In the contextual fear conditioning (cFC) test, Cdh13-/- mice showed more freezing responses during the extinction recall, indicating a reduced extinction of fear memory. In the step-down test, an impulsivity task, Cdh13-/- mice had a tendency to wait longer before stepping down from the platform, indicative of more hesitant behaviour. In the same animals, qRT-PCR of several brain areas revealed changes in the GABAergic and glutamatergic systems, while also highlighting changes in the gatekeeper enzyme Glykogensynthase-Kinase 3 (Gsk3a), both in relation to Cdh13 deficiency and MS. Results from the RNA sequencing study and subsequent gene-set enrichment analysis revealed changes in adhesion and developmental genes due to Cdh13 deficiency, while also highlighting a strong link between CDH13 and endoplasmatic reticulum function. In addition, some results suggest that MS increased pro-survival pathways, while a gene x environment analysis showed alterations in apoptotic pathways and migration, as well as immune factors and membrane metabolism. An analysis of the overlap between gene and environment, as well as their interaction, highlighted an effect on cell adhesion factors, underscoring their importance for adaptation to the environment. Overall, the stress model resulted in increased stress resilience in Cdh13+/+ and Cdh13+/- mice, a change absent in Cdh13-/- mice, suggesting a role of CDH13 during programming and adaptation to early-life experiences, that can results in long-lasting consequences on brain functions and associated behaviours. These changes were also visible in the RNA sequencing, where key pathways for cell-cell adhesion, neuronal survival and cell-stress adaptation were altered. In conclusion, these findings further highlight the role of CDH13 during brain development, while also shedding light on its function in the adaptation and response during (early life) environmental challenges.}, subject = {Cadherine}, language = {en} } @phdthesis{Letschert2019, author = {Letschert, Sebastian}, title = {Quantitative Analysis of Membrane Components using Super-Resolution Microscopy}, doi = {10.25972/OPUS-16213}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-162139}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {The plasma membrane is one of the most thoroughly studied and at the same time most complex, diverse, and least understood cellular structures. Its function is determined by the molecular composition as well as the spatial arrangement of its components. Even after decades of extensive membrane research and the proposal of dozens of models and theories, the structural organization of plasma membranes remains largely unknown. Modern imaging tools such as super-resolution fluorescence microscopy are one of the most efficient techniques in life sciences and are widely used to study the spatial arrangement and quantitative behavior of biomolecules in fixed and living cells. In this work, direct stochastic optical reconstruction microscopy (dSTORM) was used to investigate the structural distribution of mem-brane components with virtually molecular resolution. Key issues are different preparation and staining strategies for membrane imaging as well as localization-based quantitative analyses of membrane molecules. An essential precondition for the spatial and quantitative analysis of membrane components is the prevention of photoswitching artifacts in reconstructed localization microscopy images. Therefore, the impact of irradiation intensity, label density and photoswitching behavior on the distribution of plasma membrane and mitochondrial membrane proteins in dSTORM images was investigated. It is demonstrated that the combination of densely labeled plasma membranes and inappropriate photoswitching rates induces artificial membrane clusters. Moreover, inhomogeneous localization distributions induced by projections of three-dimensional membrane structures such as microvilli and vesicles are prone to generate artifacts in images of biological membranes. Alternative imaging techniques and ways to prevent artifacts in single-molecule localization microscopy are presented and extensively discussed. Another central topic addresses the spatial organization of glycosylated components covering the cell membrane. It is shown that a bioorthogonal chemical reporter system consisting of modified monosaccharide precursors and organic fluorophores can be used for specific labeling of membrane-associated glycoproteins and -lipids. The distribution of glycans was visualized by dSTORM showing a homogeneous molecule distribution on different mammalian cell lines without the presence of clusters. An absolute number of around five million glycans per cell was estimated and the results show that the combination of metabolic labeling, click chemistry, and single-molecule localization microscopy can be efficiently used to study cell surface glycoconjugates. In a third project, dSTORM was performed to investigate low-expressing receptors on cancer cells which can act as targets in personalized immunotherapy. Primary multiple myeloma cells derived from the bone marrow of several patients were analyzed for CD19 expression as potential target for chimeric antigen receptor (CAR)-modified T cells. Depending on the patient, 60-1,600 CD19 molecules per cell were quantified and functional in vitro tests demonstrate that the threshold for CD19 CAR T recognition is below 100 CD19 molecules per target cell. Results are compared with flow cytometry data, and the important roles of efficient labeling and appropriate control experiments are discussed.}, subject = {Fluoreszenzmikroskopie}, language = {en} } @phdthesis{Bertlein2019, author = {Bertlein, Sarah}, title = {Hydrogels as Biofunctional Coatings and Thiol-Ene Clickable Bioinks for Biofabrication}, doi = {10.25972/OPUS-17422}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-174225}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {Ziel dieser Arbeit war die Entwicklung von funktionalisierbaren Hydrogel Beschichtungen f{\"u}r Schmelz-elektrogeschriebene PCL Ger{\"u}ste und von Bio-druckbaren Hydrogelen f{\"u}r die Biofabrikation. Hydrogel Beschichtungen von Schmelz-elektrogeschriebenen Konstrukten erm{\"o}glichten die Kontrolle der Oberfl{\"a}chen-Hydrophilie und damit Zell-Material Interaktionsstudien in minimal Protein-adh{\"a}siven Umgebungen. Zu diesem Zweck wurde ein hydrophiles sternf{\"o}rmiges vernetzbares Polymer verwendet und eine Optimierung der Beschichtungsbedingungen durchgef{\"u}hrt. Außerdem boten neu entwickelte photosensitive Konstrukte eine Zeit- und pH-unabh{\"a}ngige Biofunktionalisierung. Bio-druckbare Hydrogele f{\"u}r die Biofabrikation basierten auf der Allyl-Funktionalisierung von Gelatine (GelAGE) und modifizierten Hyalurons{\"a}ure-Produkten, die das Hydrogel-Vernetzen mittels Thiol-En Click Chemie erm{\"o}glichen. Die Optimierung der GelAGE Hydrogel-Eigenschaften wurde durch eine detaillierte Analyse der Syntheseparameter, variierender En:SH Verh{\"a}ltnisse, unterschiedlicher Vernetzungsmolek{\"u}le und Photoinitiatoren erreicht. Die Homogenit{\"a}t der Thiol-En Netzwerke wurde mit denen der freien radikalischen Polymerisation verglichen und die Verwendbarkeit von GelAGE als Bio-Tinte f{\"u}r den Extrusions-basierten Bio-Druck wurde untersucht. Es wurde angenommen, dass reine Hyalurons{\"a}ure-basierte Bio-Tinten eine Beibehaltung der mechanischen und rheologischen Eigenschaften, der Zellviabilit{\"a}t und der Prozessierbarkeit erm{\"o}glichen trotz geringerem Polymer- und Thiol-Anteil der Hydrogele. Hydrogel-Beschichtungen: Hoch definierte PCL Ger{\"u}ste wurden mittels MEW hergestellt und anschließend mit sechs armigen sternf{\"o}rmigen vernetzbaren Polymeren (sP(EO-stat-PO)) beschichtet. Die Vernetzung wird durch die w{\"a}ssrig-induzierte Hydrolyse reaktiver Isocyanatgruppen (NCO) von sP(EO-stat-PO) bedingt. Diese Beschichtung erh{\"o}hte die Oberfl{\"a}chen-Hydrophilie und stellte eine Plattform f{\"u}r weitere Biofunktionalisierungen, in minimal Protein-adh{\"a}siven Umgebungen, dar. Nicht nur das Beschichtungsprotokoll wurde hinsichtlich der sP(EO-stat-PO) Konzentrationen und der Beschichtungsdauern optimiert, sondern auch Vorbehandlungen der Ger{\"u}ste wurden entwickelt. Diese waren essentiell um die finale Hydrophilie von sP(EO-stat-PO) beschichteten Ger{\"u}ste so zu erh{\"o}hen, dass unspezifische Protein-Adh{\"a}sionen vollst{\"a}ndig unterbunden wurden. Die sP(EO-stat-PO) Schichtdicke, von ungef{\"a}hr 100 nm, erm{\"o}glicht generell in vitro Studien nicht nur in Abh{\"a}ngigkeit der Ger{\"u}st-Biofunktionalisierung, sondern auch in Abh{\"a}ngigkeit der Ger{\"u}st-Architektur durchzuf{\"u}hren. Das Ausmaß der Hydrogel-Beschichtung wurde mittels einer indirekten Quantifizierung der NCO-Hydrolyse-Produkte ermittelt. Kenntnis {\"u}ber die NCO-Hydrolyse-Kinetik erm{\"o}glichte ein Gleichgewicht zwischen ausreichend beschichteten Ger{\"u}sten und der Pr{\"a}senz der NCO-Gruppen herzustellen, welche f{\"u}r die anschließenden Biofunktionalisierungen genutzt wurden. Diese Zeit- und pH-abh{\"a}ngige Biofunktionalisierung war jedoch nur f{\"u}r kleine Biomolek{\"u}le m{\"o}glich. Um diese Beschr{\"a}nkung zu umgehen und auch hochmolekulare Biomolek{\"u}le kovalent anzubinden, wurde ein anderer Reaktionsweg entwickelt. Dieser basierte auf der Photolyse von Diazirin-Gruppen und erm{\"o}glichte eine Zeit- und pH-unabh{\"a}ngige Biofunktionalisierung der Ger{\"u}ste mit Streptavidin und Kollagen Typ I. Die Fibrillen bildende Eigenschaft von Kollagen wurde genutzt um auf den Ger{\"u}sten verschiedene Kollagen-Konformationen zu erhalten und eine erste in vitro Studie best{\"a}tigte die Anwendbarkeit f{\"u}r Zell-Material Interaktionsstudien. Die hier entwickelten Ger{\"u}ste k{\"o}nnten verwendet werden um tiefere Einblicke in die Grundlagen der zellul{\"a}ren Wahrnehmung zu erhalten. Insbesondere die Komplexit{\"a}t mit der Zellen z.B. Kollagen wahrnehmen bleibt weiterhin kl{\"a}rungsbed{\"u}rftig. Hierf{\"u}r k{\"o}nnten diverse Hierarchien von Kollagen-{\"a}hnlichen Konformationen an die Ger{\"u}ste gebunden werden, z.B. Gelatine oder Kollagen-abgeleitete Peptidsequenzen. Dann k{\"o}nnte die Aktivierung der DDR-Rezeptoren in Abh{\"a}ngigkeit der Komplexit{\"a}t der angebundenen Substanzen bestimmt werden. Aufgrund der starken Streptavidin-Biotin Bindung k{\"o}nnten Streptavidin funktionalisierte Ger{\"u}ste eine vielseitige Plattform f{\"u}r die Immobilisierung von jeglichen biotinylierten Molek{\"u}len darstellen. Gelatine-basierte Bio-Tinten: Zuerst wurden die GelAGE-Produkte hinsichtlich der Molekulargewichts-Verteilung und der Integrit{\"a}t der Aminos{\"a}uren-Zusammensetzung synthetisiert. Eine detailliert Studie, mit variierenden molaren Edukt-Verh{\"a}ltnissen und Synthese-Zeitspannen, wurde durchgef{\"u}hrt und implizierte, dass der Gelatine Abbau am deutlichsten f{\"u}r stark alkalische Synthesebedingungen mit langen Reaktionszeiten war. Gelatine beinhaltet mehrere funktionalisierbare Gruppen und anhand diverser Model-Substanzen und Analysen wurde die vorrangige Amingruppen-Funktionalisierung ermittelt. Die Homogenit{\"a}t des GelAGE-Polymernetzwerkes, im Vergleich zu frei radikalisch polymerisierten GelMA-Hydrogelen, wurde best{\"a}tigt. Eine ausf{\"u}hrliche Analyse der Hydrogel-Zusammensetzungen mit variierenden funktionellen Gruppen Verh{\"a}ltnissen und UV- oder Vis-Licht induzierbaren Photoinitiatoren wurde durchgef{\"u}hrt. Die UV-Initiator Konzentration ist aufgrund der Zell-Toxizit{\"a}t und der potenziellen zellul{\"a}ren DNA-Besch{\"a}digung durch UV-Bestrahlung eingeschr{\"a}nkt. Das Zell-kompatiblere Vis-Initiator System hingegen erm{\"o}glichte, durch die kontrollierte Photoinitiator-Konzentration bei konstanten En:SH Verh{\"a}ltnissen und Polymeranteilen, die Einstellung der mechanischen Eigenschaften {\"u}ber eine große Spanne hinweg. Die Flexibilit{\"a}t der GelAGE Bio-Tinte f{\"u}r unterschiedliche additive Fertigungstechniken konnte, durch Ausnutzung des temperaturabh{\"a}ngigen Gelierungsverhaltens unterschiedlich stark degradierter GelAGE Produkte, f{\"u}r Stereolithographie und Extrusions-basiertem Druck bewiesen werden. Außerdem wurde die Viabilit{\"a}t zellbeladener GelAGE Konstrukte bewiesen, die mittels Extrusions-basiertem Bio-Druck erhalten wurden. Die Verwendung diverser multifunktioneller und makromolekularer Thiol-Vernetzungsmolek{\"u}le erm{\"o}glichte eine Verbesserung der mechanischen und rheologischen Eigenschaften und ebenso der Prozessierbarkeit. Verglichen mit dem kleinen bis-Thiol-funktionellen Vernetzungsmolek{\"u}l waren geringere Thiol-Vernetzer-Konzentrationen notwendig um bessere mechanische Festigkeiten und physikochemische Eigenschaften der Hydrogele zu erhalten. Der Extrusions-basierte Bio-Druck unterschiedlicher eingekapselter Zellen verdeutlichte die Notwendigkeit der individuellen Optimierung von Zell-beladenen Hydrogel-Formulierungen. Nicht nur die Zellviabilit{\"a}t von eingekapselten Zellen in Extrusions-basierten biogedruckten Konstrukten sollte bewertet werden, sondern auch andere Parameter wie die Zellmorphologie oder die Kollagen- oder Glykosaminoglykan-Produktion, da diese einige der essentiellen Voraussetzungen f{\"u}r die Verwendung in Knorpel Tissue Engineering Konzepten darstellen. Außerdem sollten diese Studien auf die stereolithographischen Ans{\"a}tze erweitert werden und letztlich w{\"a}re die Flexibilit{\"a}t und Zellkompatibilit{\"a}t der Formulierungen mit makromolekularen Vernetzern von Interesse. Makromolekulare Vernetzer erm{\"o}glichten die Reduktion des Polymeranteils und des Thiol-Gehalts und k{\"o}nnen, insbesondere in Kombination mit dem Zell-kompatibleren Vis-Initiator-System, voraussichtlich zu einer gesteigerten Zellkompatibilit{\"a}t beitragen, was zu kl{\"a}ren bleibt. Hyalurons{\"a}ure-basierte Bio-Tinten: Unterschiedliche Hyalurons{\"a}ure-Produkte (HA) wurden synthetisiert, sodass diese En- (HAPA) oder Thiol-Funktionalit{\"a}ten (LHASH) beinhalteten, um reine HA Thiol-En vernetzte Hydrogele zu erhalten. In Abh{\"a}ngigkeit des Molekulargewichts der HA-Produkte, der Polymeranteile und des En:SH Verh{\"a}ltnisses, konnte eine große Spanne an mechanischen Festigkeiten abgedeckt werden. Aufgrund der hohen Viskosit{\"a}t war allerdings im Falle von hochmolekularen HA (HHAPA) Produkt-L{\"o}sungen (HHAPA + LHASH) die Handhabbarkeit auf 5.0 wt.-\% beschr{\"a}nkt. Die Verwendung der gleichen HA Thiol-Komponenten (LHASH) erm{\"o}glichte Hybrid-Hydrogele, mit HA und GelAGE, mit reinen HA-Hydrogelen zu vergleichen. Obwohl der Polymeranteil von HHAPA + LHASH Hydrogelen signifikant geringer war, als im Vergleich zu Hybrid-Hydrogelen (GelAGE + LHASH), wurden f{\"u}r gleiche En:SH Verh{\"a}ltnisse {\"a}hnliche mechanische und physikochemische Eigenschaften reiner HA-Hydrogele bestimmt. Aufgrund der geringen Viskosit{\"a}t niedermolekularer HA L{\"o}sungen (LHAPA + LHASH) konnten diese nicht f{\"u}r den Extrusions-basierten Druck verwendet werden. Das nicht temperaturabh{\"a}ngige HHAPA + LHASH System hingegen konnte mit nur einem Viertel des Polymeranteils der Hybrid Formulierungen gedruckt werden. Im Vergleich zu der Hybrid Bio-Tinte wurde angenommen, dass das hoch viskose Verhalten von HHAPA + LHASH L{\"o}sungen, der geringere Polymeranteil, der geringere Druck f{\"u}r das Drucken und eine demzufolge geringere Scherspannung, maßgeblich zu der hohen Zellviabilit{\"a}t in Extrusions-basiert-biogedruckten Konstrukten beisteuerten. Die niedrigmolekulare HA Formulierung (LHAPA + LHASH) konnte zwar nicht f{\"u}r den Extrusions-basierten Druck verwendet werden, allerdings besitzt dieses System Potential f{\"u}r andere additive Fertigungstechniken wie z.B. der Stereolithographie. Um dieses System weiterzuentwickeln w{\"a}re, analog zu dem GelAGE System, eine detailliertere Studie zu den Funktionen eingekapselter Zellen hilfreich. Außerdem sollte die Initiierung dieses Systems mit dem Vis-Initiator untersucht werden.}, subject = {Biomaterial}, language = {en} } @phdthesis{Schnells2019, author = {Schnells, Vera}, title = {Fractional Insulators and their Parent Hamiltonians}, doi = {10.25972/OPUS-18561}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-185616}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {In the past few years, two-dimensional quantum liquids with fractional excitations have been a topic of high interest due to their possible application in the emerging field of quantum computation and cryptography. This thesis is devoted to a deeper understanding of known and new fractional quantum Hall states and their stabilization in local models. We pursue two different paths, namely chiral spin liquids and fractionally quantized, topological phases. The chiral spin liquid is one of the few examples of spin liquids with fractional statistics. Despite its numerous promising properties, the microscopic models for this state proposed so far are all based on non-local interactions, making the experimental realization challenging. In the first part of this thesis, we present the first local parent Hamiltonians, for which the Abelian and non-Abelian chiral spin liquids are the exact and, modulo a topological degeneracy, unique ground states. We have developed a systematic approach to find an annihilation operator of the chiral spin liquid and construct from it a many-body interaction which establishes locality. For various system sizes and lattice geometries, we numerically find largely gapped eigenspectra and confirm to an accuracy of machine precision the uniqueness of the chiral spin liquid as ground state of the respective system. Our results provide an exact spin model in which fractional quantization can be studied. Topological insulators are one of the most actively studied topics in current condensed matter physics research. With the discovery of the topological insulator, one question emerged: Is there an interaction-driven set of fractionalized phases with time reversal symmetry? One intuitive approach to the theoretical construction of such a fractional topological insulator is to take the direct product of a fractional quantum Hall state and its time reversal conjugate. However, such states are well studied conceptually and do not lead to new physics, as the idea of taking a state and its mirror image together without any entanglement between the states has been well understood in the context of topological insulators. Therefore, the community has been looking for ways to implement some topological interlocking between different spin species. Yet, for all practical purposes so far, time reversal symmetry has appeared to limit the set of possible fractional states to those with no interlocking between the two spin species. In the second part of this thesis, we propose a new universality class of fractionally quantized, topologically ordered insulators, which we name "fractional insulator". Inspired by the fractional quantum Hall effect, spin liquids, and fractional Chern insulators, we develop a wave function approach to a new class of topological order in a two-dimensional crystal of spin-orbit coupled electrons. The idea is simply to allow the topological order to violate time reversal symmetry, while all locally observable quantities remain time reversal invariant. We refer to this situation as "topological time reversal symmetry breaking". Our state is based on the Halperin double layer states and can be viewed as a two-layer system of an ↑-spin and a ↓-spin sphere. The construction starts off with Laughlin states for the ↑-spin and ↓-spin electrons and an interflavor term, which creates correlations between the two layers. With a careful parameter choice, we obtain a state preserving time reversal symmetry locally, and label it the "311-state". For systems of up to six ↑-spin and six ↓-spin electrons, we manage to construct an approximate parent Hamiltonian with a physically realistic, local interaction.}, subject = {Spinfl{\"u}ssigkeit}, language = {en} } @phdthesis{Trabel2019, author = {Trabel, Mirko}, title = {Growth and Characterization of Epitaxial Manganese Silicide Thin Films}, doi = {10.25972/OPUS-18472}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-184720}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {This thesis describes the growth and characterization of epitaxial MnSi thin films on Si substrates. The interest in this material system stems from the rich magnetic phase diagram resulting from the noncentrosymmetric B20 crystal structure. Here neighboring spins prefer a tilted relative arrangement in contrast to ferro- and antiferromagnets, which leads to a helical ground state where crystal and spin helix chirality are linked [IEM+85]. This link makes the characterization and control of the crystal chirality the main goal of this thesis. After a brief description of the material properties and applied methods, the thesis itself is divided into four main parts. In the first part the advancement of the MBE growth process of MnSi on Si\((111)\) substrate as well as the fundamental structural characterization are described. Here the improvement of the substrate interface by an adjusted substrate preparation process is demonstrated, which is the basis for well ordered flat MnSi layers. On this foundation the influence of Mn/Si flux ratio and substrate temperature on the MnSi layer growth is investigated via XRD and clear boundaries to identify the optimal growth conditions are determined. The nonstoichiometric phases outside of this optimal growth window are identified as HMS and Mn\(_5\)Si\(_3\). Additionally, a regime at high substrate temperatures and low Mn flux is discovered, where MnSi islands are growing incorporated in a Si layer, which could be interesting for further investigations as a size confinement can change the magnetic phase diagram [DBS+18]. XRD measurements demonstrate the homogeneity of the grown MnSi layers over most of the 3 inch wafer diameter and a small \(\omega\)-FWHM of about 0.02° demonstrates the high quality of the layers. XRD and TEM measurements also show that relaxation of the layers happens via misfit dislocations at the interface to the substrate. The second part of the thesis is concerned with the crystal chirality. Here azimuthal \(\phi\)-scans of asymmetric XRD reflections reveal twin domains with a \(\pm\)30° rotation to the substrate. These twin domains seem to consist of left and right-handed MnSi, which are connected by a mirror operation at the \((\bar{1}10)\) plane. For some of the asymmetric XRD reflections this results in different intensities for the different twin domains, which reveals that one of the domains is rotated +30° and the other is rotated -30°. From XRD and TEM measurements an equal volume fraction of both domains is deduced. Different mechanisms to suppress these twin domains are investigated and successfully achieved with the growth on chiral Si surfaces, namely Si\((321)\) and Si\((531)\). Azimuthal \(\phi\)-scans of asymmetric XRD reflections demonstrate a suppression of up to 92\%. The successful twin suppression is an important step in the use of MnSi for the proposed spintronics applications with skyrmions as information carriers, as discussed in the introduction. Because of this achievement, the third part of the thesis on the magnetic properties of the MnSi thin films is not only concerned with the principal behavior, but also with the difference between twinned and twin suppressed layers. Magnetometry measurements are used to demonstrate, that the MnSi layers behave principally as expected from the literature. The analysis of saturation and residual magnetization hints to the twin suppression on Si\((321)\) and Si\((531)\) substrates and further investigations with more samples can complete this picture. For comparable layers on Si\((111)\), Si\((321)\) and Si\((531)\) the Curie-Weiss temperature is identical within 1 K and the critical field within 0.1 T. Temperature dependent magnetoresistivity measurements also demonstrate the expected \(T^2\) behavior not only on Si\((111)\) but also on Si\((321)\) substrates. This demonstrates the successful growth of MnSi on Si\((321)\) and Si\((531)\) substrates. The latter measurements also reveal a residual resistivity of less then half for MnSi on Si\((321)\) in comparison to Si\((111)\). This can be explained with the reduced number of domain boundaries demonstrating the successful suppression of one of the twin domains. The homogeneity of the residual resistivity as well as the charge carrier density over a wide area of the Si\((111)\) wafer is also demonstrated with these measurements as well as Hall effect measurements. The fourth part shows the AMR and PHE of MnSi depending on the angle between in plane current and magnetic field direction with respect to the crystal direction. This was proposed as a tool to identify skyrmions [YKT+15]. The influence of the higher C\(_{3\mathrm{v}}\) symmetry of the twinned system instead of the C\(_3\) symmetry of a B20 single crystal is demonstrated. The difference could serve as a useful additional tool to prove the twin suppression on the chiral substrates. But this is only possible for rotations with specific symmetry surfaces and not for the studied unsymmetrical Si\((321)\) surface. Measurements for MnSi layers on Si\((111)\) above the critical magnetic field demonstrate the attenuation of AMR and PHE parameters for increasing resistivity, as expected from literature [WC67]. Even if a direct comparison to the parameters on Si\((321)\) is not possible, the higher values of the parameters on Si\((321)\) can be explained considering the reduced charge carrier scattering from domain boundaries. Below the critical magnetic field, which would be the region where a skyrmion lattice could be expected, magnetic hysteresis complicates the analysis. Only one phase transition at the critical magnetic field can be clearly observed, which leaves the existence of a skyrmion lattice in thin epitaxial MnSi layers open. The best method to solve this question seems to be a more direct approach in the form of Lorentz-TEM, which was also successfully used to visualize the skyrmion lattice for thin plates of bulk MnSi [TYY+12]. For the detection of in plane skyrmions, lamellas would have to be prepared for a side view, which seems in principle possible. The demonstrated successful twin suppression for MnSi on Si\((321)\) and Si\((531)\) substrates may also be applied to other material systems. Suppressing the twinning in FeGe on Si\((111)\) would lead to a single chirality skyrmion lattice near room temperature [HC12]. This could bring the application of skyrmions as information carriers in spintronics within reach. Glossary: MBE Molecular Beam Epitaxy XRD X-Ray Diffraction HMS Higher Manganese Silicide FWHM Full Width Half Maximum TEM Tunneling Electron Microscopy AMR Anisotropic MagnetoResistance PHE Planar Hall Effect Bibliography: [IEM+85] M. Ishida, Y. Endoh, S. Mitsuda, Y. Ishikawa, and M. Tanaka. Crystal Chirality and Helicity of the Helical Spin Density Wave in MnSi. II. Polarized Neutron Diffraction. Journal of the Physical Society of Japan, 54(8):2975, 1985. [DBS+18] B. Das, B. Balasubramanian, R. Skomski, P. Mukherjee, S. R. Valloppilly, G. C. Hadjipanayis, and D. J. Sellmyer. Effect of size confinement on skyrmionic properties of MnSi nanomagnets. Nanoscale, 10(20):9504, 2018. [YKT+15] T. Yokouchi, N. Kanazawa, A. Tsukazaki, Y. Kozuka, A. Kikkawa, Y. Taguchi, M. Kawasaki, M. Ichikawa, F. Kagawa, and Y. Tokura. Formation of In-plane Skyrmions in Epitaxial MnSi Thin Films as Revealed by Planar Hall Effect. Journal of the Physical Society of Japan, 84(10):104708, 2015. [WC67] R. H. Walden and R. F. Cotellessa. Magnetoresistance of Nickel-Copper Single-Crystal Thin Films. Journal of Applied Physics, 38(3):1335, 1967. [TYY+12] A. Tonomura, X. Yu, K. Yanagisawa, T. Matsuda, Y. Onose, N. Kanazawa, H. S. Park, and Y. Tokura. Real-Space Observation of Skyrmion Lattice in Helimagnet MnSi Thin Samples. Nano Letters, 12(3):1673, 2012. [HC12] S. X. Huang and C. L. Chien. Extended Skyrmion Phase in Epitaxial FeGe(111) Thin Films. Physical Review Letters, 108(26):267201, 2012.}, subject = {Molekularstrahlepitaxie}, language = {en} } @phdthesis{Schwedhelm2019, author = {Schwedhelm, Ivo Peter}, title = {A non-invasive microscopy platform for the online monitoring of hiPSC aggregation in suspension cultures in small-scale stirred tank bioreactors}, doi = {10.25972/OPUS-19298}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-192989}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {The culture of human induced pluripotent stem cells (hiPSCs) at large-scale becomes feasible with the aid of scalable suspension setups in continuously stirred tank reactors (CSTRs). Suspension cul- tures of hiPSCs are characterized by the self-aggregation of single cells into macroscopic cell aggre- gates that increase in size over time. The development of these free-floating aggregates is dependent on the culture vessel and thus represents a novel process parameter that is of particular interest for hiPSC suspension culture scaling. Further, aggregates surpassing a critical size are prone to spon- taneous differentiation or cell viability loss. In this regard, and, for the first time, a hiPSC-specific suspension culture unit was developed that utilizes in situ microscope imaging to monitor and to characterize hiPSC aggregation in one specific CSTR setup to a statistically significant degree while omitting the need for error-prone and time-intensive sampling. For this purpose, a small-scale CSTR system was designed and fabricated by fused deposition modeling (FDM) using an in-house 3D- printer. To provide a suitable cell culture environment for the CSTR system and in situ microscope, a custom-built incubator was constructed to accommodate all culture vessels and process control devices. Prior to manufacture, the CSTR design was characterized in silico for standard engineering parameters such as the specific power input, mixing time, and shear stress using computational fluid dynamics (CFD) simulations. The established computational model was successfully validated by comparing CFD-derived mixing time data to manual measurements. Proof for system functionality was provided in the context of long-term expansion (4 passages) of hiPSCs. Thereby, hiPSC aggregate size development was successfully tracked by in situ imaging of CSTR suspensions and subsequent automated image processing. Further, the suitability of the developed hiPSC culture unit was proven by demonstrating the preservation of CSTR-cultured hiPSC pluripotency on RNA level by qRT-PCR and PluriTest, and on protein level by flow cytometry.}, subject = {Induzierte pluripotente Stammzelle}, language = {en} } @phdthesis{Reinhard2019, author = {Reinhard, Julia}, title = {Developmental Aspects of Fear Learning and Fear Generalization}, doi = {10.25972/OPUS-16437}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-164372}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {In situations of real threat, showing a fear reaction makes sense, thus, increasing the chance to survive. The question is, how could anybody differentiate between a real and an apparent threat? Here, the slogan counts "better safe than sorry", meaning that it is better to shy away once too often from nothing than once too little from a real threat. Furthermore, in a complex environment it is adaptive to generalize from one threatening situation or stimulus to another similar situation/stimulus. But, the danger hereby is to generalize in a maladaptive manner involving as it is to strong and/or fear too often "harmless" (safety) situations/stimuli, as it is known to be a criterion of anxiety disorders (AD). Fear conditioning and fear generalization paradigms are well suited to investigate fear learning processes. It is remarkable that despite increasing interest in this topic there is only little research on fear generalization. Especially, most research on human fear conditioning and its generalization has focused on adults, whereas only little is known about these processes in children, even though AD is typically developing during childhood. To address this knowledge gap, four experiments were conducted, in which a discriminative fear conditioning and generalization paradigm was used. In the first two experiments, developmental aspects of fear learning and generalization were of special interest. Therefore, in the first experiment 267 children and 285 adults were compared in the differential fear conditioning paradigm and generalization test. Skin conductance responses (SCRs) and ratings of valence and arousal were obtained to indicate fear learning. Both groups displayed robust and similar differential conditioning on subjective and physiological levels. However, children showed heightened fear generalization compared to adults as indexed by higher arousal ratings and SCRs to the generalization stimuli. Results indicate overgeneralization of conditioned fear as a developmental correlate of fear learning. The developmental change from a shallow to a steeper generalization gradient is likely related to the maturation of brain structures that modulate efficient discrimination between threatening and (ambiguous) safety cues. The question hereby is, at which developmental stage fear generalization gradients of children adapt to the gradients of adults. Following up on this question, in a second experiment, developmental changes in fear conditioning and fear generalization between children and adolescents were investigated. According to experiment 1 and previous studies in children, which showed changes in fear learning with increasing age, it was assumed that older children were better at discriminating threat and safety stimuli. Therefore, 396 healthy participants (aged 8 to 12 years) were examined with the fear conditioning and generalization paradigm. Again, ratings of valence, arousal, and SCRs were obtained. SCRs indicated differences in fear generalization with best fear discrimination in 12-year-old children suggesting that the age of 12 years seems to play an important role, since generalization gradients were similar to that of adults. These age differences were seen in boys and girls, but best discrimination was found in 12-year-old boys, indicating different development of generalization gradients according to sex. This result fits nicely with the fact that the prevalence of AD is higher in women than in men. In a third study, it was supposed that the developmental trajectory from increased trait anxiety in childhood to manifest AD could be mediated by abnormal fear conditioning and generalization processes. To this end, 394 children aged 8 to 12 years with different scores in trait anxiety were compared with each other. Results provided evidence that children with high trait anxiety showed stronger responses to threat cues and impaired safety signal learning contingent on awareness as indicated by arousal at acquisition. Furthermore, analyses revealed that children with high trait anxiety showed overall higher arousal ratings at generalization. Contrary to what was expected, high trait anxious children did not show significantly more fear generalization than children with low trait anxiety. However, high-trait-anxious (HA) participants showed a trend for a more linear gradient, whereas moderate-trait-anxious (MA) and low-trait-anxious (LA) participants showed more quadratic gradients according to arousal. Additionally, after controlling for age, sex and negative life experience, SCR to the safety stimulus predicted the trait anxiety level of children suggesting that impaired safety signal learning may be a risk factor for the development of AD. Results provide hints that frontal maturation could develop differently according to trait anxiety resulting in different stimuli discrimination. Thus, in a fourth experiment, 40 typically developing volunteers aged 10 to 18 years were screened for trait anxiety and investigated with the differential fear conditioning and generalization paradigm in the scanner. Functional magnetic resonance imaging (fMRI) were used to identify the neural mechanisms of fear learning and fear generalization investigating differences in this neural mechanism according to trait anxiety, developmental aspects and sex. At acquisition, HA participants showed reduced activation in frontal brain regions, but at generalization, HA participants showed an increase in these frontal regions with stronger linear increase in activation with similarity to CS+ in HA when compared to LA participants. This indicates that there is a hyper-regulation in adolescents to compensate the higher difficulties at generalization in form of a compensatory mechanism, which decompensates with adulthood and/or may be collapsed in manifest AD. Additionally, significant developmental effects were found: the older the subjects the stronger the hippocampus and frontal activation with resemblance to CS+, which could explain the overgeneralization of younger children. Furthermore, there were differences according to sex: males showed stronger activation with resemblance to CS+ in the hippocampus and frontal regions when compared to females fitting again nicely with the observation that prevalence rates for AD are higher for females than males. In sum, the studies suggest that investigating developmental aspects of (maladaptive) overgeneralization may lead to better understanding of the mechanisms of manifest anxiety disorders, which could result in development and provision of prevention strategies. Although, there is need for further investigations, the present work gives some first hints for such approaches.}, subject = {Furcht}, language = {en} } @phdthesis{Rubo2019, author = {Rubo, Marius}, title = {Social Attention in the Laboratory, in Real Life and in Virtual Reality}, doi = {10.25972/OPUS-18845}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-188452}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {Social attention is a ubiquitous, but also enigmatic and sometimes elusive phenomenon. We direct our gaze at other human beings to see what they are doing and to guess their intentions, but we may also absorb social events en passant as they unfold in the corner of the eye. We use our gaze as a discrete communication channel, sometimes conveying pieces of information which would be difficult to explicate, but we may also find ourselves avoiding eye-contact with others in moments when self-disclosure is fear-laden. We experience our gaze as the most genuine expression of our will, but research also suggests considerable levels of predictability and automaticity in our gaze behavior. The phenomenon's complexity has hindered researchers from developing a unified framework which can conclusively accommodate all of its aspects, or from even agreeing on the most promising research methodologies. The present work follows a multi-methods approach, taking on several aspects of the phenomenon from various directions. Participants in study 1 viewed dynamic social scenes on a computer screen. Here, low-level physical saliency (i.e. color, contrast, or motion) and human heads both attracted gaze to a similar extent, providing a comparison of two vastly different classes of gaze predictors in direct juxtaposition. In study 2, participants with varying degrees of social anxiety walked in a public train station while their eye movements were tracked. With increasing levels of social anxiety, participants showed a relative avoidance of gaze at near compared to distant people. When replicating the experiment in a laboratory situation with a matched participant group, social anxiety did not modulate gaze behavior, fueling the debate around appropriate experimental designs in the field. Study 3 employed virtual reality (VR) to investigate social gaze in a complex and immersive, but still highly controlled situation. In this situation, participants exhibited a gaze behavior which may be more typical for real-life compared to laboratory situations as they avoided gaze contact with a virtual conspecific unless she gazed at them. This study provided important insights into gaze behavior in virtual social situations, helping to better estimate the possible benefits of this new research approach. Throughout all three experiments, participants showed consistent inter-individual differences in their gaze behavior. However, the present work could not resolve if these differences are linked to psychologically meaningful traits or if they instead have an epiphenomenal character.}, subject = {Aufmerksamkeit}, language = {en} } @phdthesis{WeinstockgebPattschull2019, author = {Weinstock [geb. Pattschull], Grit}, title = {Crosstalk between the MMB complex and YAP in transcriptional regulation of cell cycle genes}, doi = {10.25972/OPUS-17086}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-170866}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {The Myb-MuvB (MMB) multiprotein complex is a master regulator of cell cycle-dependent gene expression. Target genes of MMB are expressed at elevated levels in several different cancer types and are included in the chromosomal instability (CIN) signature of lung, brain, and breast tumors. This doctoral thesis showed that the complete loss of the MMB core subunit LIN9 leads to strong proliferation defects and nuclear abnormalities in primary lung adenocarcinoma cells. Transcriptome profiling and genome-wide DNA-binding analyses of MMB in lung adenocarcinoma cells revealed that MMB drives the expression of genes linked to cell cycle progression, mitosis, and chromosome segregation by direct binding to promoters of these genes. Unexpectedly, a previously unknown overlap between MMB-dependent genes and several signatures of YAP-regulated genes was identified. YAP is a transcriptional co-activator acting downstream of the Hippo signaling pathway, which is deregulated in many tumor types. Here, MMB and YAP were found to physically interact and co-regulate a set of mitotic and cytokinetic target genes, which are important in cancer. Furthermore, the activation of mitotic genes and the induction of entry into mitosis by YAP were strongly dependent on MMB. By ChIP-seq and 4C-seq, the genome-wide binding of MMB upon YAP overexpression was analyzed and long-range chromatin interaction sites of selected MMB target gene promoters were identified. Strikingly, YAP strongly promoted chromatin-association of B-MYB through binding to distal enhancer elements that interact with MMB-regulated promoters through chromatin looping. Together, the findings of this thesis provide a so far unknown molecular mechanism by which YAP and MMB cooperate to regulate mitotic gene expression and suggest a link between two cancer-relevant signaling pathways.}, subject = {Krebs }, language = {en} } @phdthesis{Schiele2019, author = {Schiele, Miriam}, title = {Interaction of 5-HTT/NPSR1 variants with distal and acute stress on dimensional and neuroendocrine anxiety endophenotypes - A multi-dimensional model of anxiety risk}, doi = {10.25972/OPUS-14860}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-148600}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {The etiology of anxiety disorders is multifactorial with contributions from both genetic and environmental factors. Several susceptibility genes of anxiety disorders or anxiety-related intermediate phenotypes have been identified, including the serotonin transporter gene (5-HTT) and the neuropeptide S receptor gene (NPSR1), which have been shown to modulate responses to distal and acute stress experiences. For instance, gene-environment interaction (GxE) studies have provided evidence that both 5-HTT and NPSR1 interact with environmental stress, particularly traumatic experiences during childhood, in the moderation of anxiety traits, and both 5-HTT and NPSR1 have been implicated in hypothalamic-pituitary-adrenal (HPA) axis reactivity - an intermediate phenotype of mental disorders - in response to acute stress exposure. The first part of this thesis aimed to address the interplay of variations in both 5-HTT and NPSR1 genes and distal stress experiences, i.e. childhood trauma, in the moderation of anxiety-related traits, extended by investigation of the potentially protective effect of positive influences, i.e. elements of successful coping such as general self-efficacy (GSE), on a GxE risk constellation by introducing GSE as an indicator of coping ability ("C") as an additional dimension in a GxExC approach conferring - or buffering - vulnerability to anxiety. Increased anxiety was observed in 5-HTTLPR/rs25531 LALA genotype and NSPR1 rs324981 AA genotype carriers, respectively, with a history of childhood maltreatment but only in the absence of a person's ability to cope with adversity, whereas a dose-dependent effect on anxiety traits as a function of maltreatment experiences irrespective of coping characteristics was observed in the presence of at least one 5-HTT S/LG or NSPR1 T allele, respectively. The second part of this thesis addressed the respective impact of 5-HTT and NPSR1 variants on the neuroendocrine, i.e. salivary cortisol response to acute psychosocial stress by applying the Maastricht Acute Stress Test (MAST). A direct effect of NPSR1 - but not 5-HTT - on the modulation of acute stress reactivity could be discerned, with carriers of the more active NPSR1 T allele Summary III displaying significantly higher overall salivary cortisol levels in response to the MAST compared to AA genotype carriers. In summary, study 1 observed a moderating effect of GSE in interaction with childhood maltreatment and 5-HTT and NPSR1, respectively, in an extended GxExC model of anxiety risk, which may serve to inform targeted preventive interventions mitigating GxE risk constellations and to improve therapeutic interventions by strengthening coping ability as a protective mechanism to promote resilient functioning. In study 2, a modulation of HPA axis function, considered to be an endophenotype of stress-related mental disorders, by NPSR1 gene variation could be discerned, suggesting neuroendocrine stress reactivity as an important potential intermediate phenotype of anxiety given findings linking NPSR1 to dimensional and categorical anxiety. Results from both studies may converge within the framework of a multi-level model of anxiety risk, integrating neurobiological, neuroendocrine, environmental, and psychological factors that act together in a highly complex manner towards increasing or decreasing anxiety risk.}, subject = {Angst}, language = {en} } @phdthesis{RamirezPasos2019, author = {Ramirez Pasos, Uri Eduardo}, title = {Subthalamic Nucleus Neural Synchronization and Connectivity during Limbic Processing of Emotional Pictures: Evidence from Invasive Recordings in Patients with Parkinson's Disease}, doi = {10.25972/OPUS-16985}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-169850}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {In addition to bradykinesia and tremor, patients with Parkinson's disease (PD) are known to exhibit non-motor symptoms such as apathy and hypomimia but also impulsivity in response to dopaminergic replacement therapy. Moreover, a plethora of studies observe differences in electrocortical and autonomic responses to both visual and acoustic affective stimuli in PD subjects compared to healthy controls. This suggests that the basal ganglia (BG), as well as the hyperdirect pathway and BG thalamocortical circuits, are involved in affective processing. Recent studies have shown valence and dopamine-dependent changes in synchronization in the subthalamic nucleus (STN) in PD patients during affective tasks. This thesis investigates the role of dopamine, valence, and laterality in STN electrophysiology by analyzing event-related potentials (ERP), synchronization, and inter-hemispheric STN connectivity. STN recordings were obtained from PD patients with chronically implanted electrodes for deep brain stimulation during a passive affective picture presentation task. The STN exhibited valence-dependent ERP latencies and lateralized 'high beta' (28-40 Hz) event-related desynchronization. This thesis also examines the role of dopamine, valence, and laterality on STN functional connectivity with the anterior cingulate cortex (ACC) and the amygdala. The activity of these limbic structures was reconstructed using simultaneously recorded electroencephalographic signals. While the STN was found to establish early coupling with both structures, STN-ACC coupling in the 'alpha' range (7-11 Hz) and uncoupling in the 'low beta' range (14-21 Hz) were lateralized. Lateralization was also observed at the level of synchrony in both reconstructed sources and for ACC ERP amplitude, whereas dopamine modulated ERP latency in the amygdala. These results may deepen our current understanding of the STN as a limbic node within larger emotional-motor networks in the brain.
}, subject = {Nucleus subthalamicus}, language = {en} } @phdthesis{Griffoni2019, author = {Griffoni, Chiara}, title = {Towards advanced immunocompetent skin wound models for in vitro drug evaluation}, doi = {10.25972/OPUS-19212}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-192125}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {Current preclinical models used to evaluate novel therapies for improved healing include both in vitro and in vivo methods. However, ethical concerns related to the use of animals as well as the poor physiological translation between animal and human skin wound healing designate in vitro models as a highly relevant and promising platforms for healing investigation. While current in vitro 3D skin models recapitulate a mature tissue with healing properties, they still represent a simplification of the in vivo conditions, where for example the inflammatory response originating after wound formation involves the contribution of immune cells. Macrophages are among the main contributors to the inflammatory response and regulate its course thanks to their plasticity. Therefore, their implementation into in vitro skin could greatly increase the physiological relevance of the models. As no full-thickness immunocompetent skin model containing macrophages has been reported so far, the parameters necessary for a successful triple co-culture of fibroblasts, keratinocytes and macrophages were here investigated. At first, cell source and culture timed but also an implementation strategy for macrophages were deter-mined. The implementation of macrophages into the skin model focused on the minimization of the culture time to preserve immune cell viability and phenotype, as the environment has a major influence on cell polarization and cytokine production. To this end, incorporation of macrophages in 3D gels prior to the combination with skin models was selected to better mimic the in vivo environment. Em-bedded in collagen hydrogels, macrophages displayed a homogeneous cell distribution within the gel, preserving cell viability, their ability to respond to stimuli and their capability to migrate through the matrix, which are all needed during the involvement of macrophages in the inflammatory response. Once established how to introduce macrophages into skin models, different culture media were evaluated for their effects on primary fibroblasts, keratinocytes and macrophages, to identify a suitable medium composition for the culture of immunocompetent skin. The present work confirmed that each cell type requires a different supplement combination for maintaining functional features and showed for the first time that media that promote and maintain a mature skin structure have negative effects on primary macrophages. Skin differentiation media negatively affected macrophages in terms of viability, morphology, ability to respond to pro- and anti-inflammatory stimuli and to migrate through a collagen gel. The combination of wounded skin equivalents and macrophage-containing gels con-firmed that culture medium inhibits macrophage participation in the inflammatory response that oc-curs after wounding. The described macrophage inclusion method for immunocompetent skin creation is a promising approach for generating more relevant skin models. Further optimization of the co-cul-ture medium will potentially allow mimicking a physiological inflammatory response, enabling to eval-uate the effects novel drugs designed for improved healing on improved in vitro models.}, subject = {Haut}, language = {en} } @phdthesis{Baur2019, author = {Baur, Florentin Philipp}, title = {Establishment of a 3D tumour model and targeted therapy of BRAF-mutant colorectal cancer}, doi = {10.25972/OPUS-17412}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-174129}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {Cancer remains after cardiovascular diseases the leading cause of death worldwide and an estimated 8.2 million people died of it in 2012. By 2030, 13 million cancer deaths are expected due to the growth and ageing of the population. Hereof, colorectal cancer (CRC) is the third most common cancer in men and the second in women with a wide geographical variation across the world. Usually, CRC begins as a non-cancerous growth leading to an adenomatous polyp, or adenoma, arising from glandular cells. Since research has brought about better understanding of the mechanisms of cancer development, novel treatments such as targeted therapy have emerged in the past decades. Despite that, up to 95\% of anticancer drugs tested in clinical phase I trials do not attain a market authorisation and hence these high attrition rates remain a key challenge for the pharmaceutical industry, making drug development processes enormously costly and inefficient. Therefore, new preclinical in vitro models which can predict drug responses in vivo more precisely are urgently needed. Tissue engineering not only provides the possibility of creating artificial three-dimensional (3D) in vitro tissues, such as functional organs, but also enables the investigation of drug responses in pathological tissue models, that is, in 3D cancer models which are superior to conventional two-dimensional (2D) cell cultures on petri dishes and can overcome the limitations of animal models, thereby reducing the need for preclinical in vivo models. In this thesis, novel 3D CRC models on the basis of a decellularised intestinal matrix were established. In the first part, it could be shown that the cell line SW480 exhibited different characteristics when grown in a 3D environment from those in conventional 2D culture. While the cells showed a mesenchymal phenotype in 2D culture, they displayed a more pronounced epithelial character in the 3D model. By adding stromal cells (fibroblasts), the cancer cells changed their growth pattern and built tumour-like structures together with the fibroblasts, thereby remodelling the natural mucosal structures of the scaffold. Additionally, the established 3D tumour model was used as a test system for treatment with standard chemotherapeutic 5-fluorouracil (5-FU). The second part of the thesis focused on the establishment of a 3D in vitro test system for targeted therapy. The US Food and Drug Administration has already approved of a number of drugs for targeted therapy of specific types of cancer. For instance, the small molecule vemurafenib (PLX4032, Zelboraf™) which demonstrated impressive response rates of 50-80\% in melanoma patients with a mutation of the rapidly accelerated fibrosarcoma oncogene type B (BRAF) kinase which belongs to the mitogen active protein kinase (MAPK) signalling pathway. However, only 5\% of CRC patients harbouring the same BRAF mutation respond to treatment with vemurafenib. An explanation for this unresponsiveness could be a feedback activation of the upstream EGFR, reactivating the MAPK pathway which sustains a proliferative signalling. To test this hypothesis, the two early passage cell lines HROC24 and HROC87, both presenting the mutation BRAF V600E but differing in other mutations, were used and their drug response to vemurafenib and/or gefitinib was assessed in conventional 2D cell culture and compared to the more advanced 3D model. Under 3D culture conditions, both cell lines showed a reduction of the proliferation rate only in the combination therapy approach. Furthermore, no significant differences between the various treatment approaches and the untreated control regarding apoptosis rate and viability for both cell lines could be found in the 3D tumour model which conferred an enhanced chemoresistance to the cancer cells. Because of the observed unresponsiveness to BRAF inhibition by vemurafenib as can be seen in the clinic for patients with BRAF mutations in CRC, the cell line HROC87 was used for further xenografting experiments and analysis of activation changes in the MAPK signalling pathway. It could be shown that the cells presented a reactivation of Akt in the 3D model when treated with both inhibitors, suggesting an escape mechanism for apoptosis which was not present in cells cultured under conventional 2D conditions. Moreover, the cells exhibited an activation of the hepatocyte growth factor receptor (HGFR, c-Met) in 2D and 3D culture, but this was not detectable in the xenograft model. This shows the limitations of in vivo models. The results suggest another feedback activation loop than that to the EGFR which might not primarily be involved in the resistance mechanism. This reflects the before mentioned high attrition rates in the preclinical drug testing.}, subject = {Dickdarmtumor}, language = {en} }