@phdthesis{Purea2008,
  author    = {Purea, Edmund Armin},
  title     = {New Methods and Applications in Nuclear Magnetic Resonance Microscopy using small RF Coils},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-31066},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2008},
  abstract  = {Nuclear magnetic resonance (NMR) imaging is a well-established imaging technique. If the achieved spatial resolution is below 100 um, it is usually denoted as magnetic resonance microscopy (MRM). The spatial resolution limit is on the order of a few um. As a downside, high resolution imaging is usually time-consuming and technological requirements are very sumptuous. Furthermore, miniaturization of the radiofrequency (RF) coil leading to a so-called microcoil is necessary; it also brings along detrimental effects. Therefore, there is a high potential for optimizing present MRM methods. Hence it is the aim of this work to improve and further develop present methods in MRM with focus on the RF coil and to apply those methods on new biological applications. All experiments were conducted on a Bruker 17.6 T system with a maximum gradient strength of 1 T/m and four RF receiver channels. Minimizing the RF coil dimensions, leads to increased artefacts due to differences in magnetic susceptibility of the coil wire and surrounding air. Susceptibility matching by immersing the coil in FC-43 is the most common approach that fulfills the requirements of most applications. However, hardly any alternatives are known for cases where usage of FC-43 is not feasible due to its specific disadvantages. Two alternative substances (bromotricholoromethane and Fomblin Y25) were presented and their usability was checked by susceptibility determination and demonstration experiments after shimming under practical conditions. In a typical MRM microcoil experiment, the sample volume is significantly smaller than the maximum volume usable for imaging. This mismatch has been optimized in order to increase the experiment efficiency by increasing the number of probe coils and samples used. A four-channel probehead consisting of four individual solenoid coils suited for cellular imaging of Xenopus laevis oocytes was designed, allowing simultaneous acquisition from four samples. All coils were well isolated and allowed quantitative image acquisition with the same spatial resolution as in single coil operation. This method has also been applied in other studies for increased efficiency: using X. laevis oocytes as a single cell model, the effect of chemical fixation on intracellular NMR relaxation times T1 and T2 and on diffusion was studied for the first time. Significant reduction of relaxation times was found in all cell compartments; after reimmersion in buffer, values return close to the initial values, but there were small but statistically significant differences due to residual formaldehyde. Embryos of the same species have been studied morphologically in different developmental stages. Wild type embryos were compared to embryos that had experienced variations in protein levels of chromosomal proteins HMGN and H1A. Significant differences were found between wild type and HMGN-modified embryos, while no difference was observed between wild type and H1-modified embryos. These results were concordant with results obtained from light microscopy and histology. The technique of molecular imaging was also performed on X. laevis embryos. Commercially available antibodies coupled to ultrasmall superparamagnetic iron oxide (USPIO) dextrane coated particles (MACS) served as a specific probe detectable by MRM, the aim being the detection of tissue specific contrast variations. Initially, the relaxivity of MACS was studied and compared to Resovist and VSOP particles. The iron concentration was determined quantitatively by using a general theoretical approach and results were compared to values obtained from mass spectroscopy. After incubation with MACS antibodies, intraembryonal relaxation times were determined in different regions of the embryo. These values allowed determination of local iron oxide particle concentrations, and specific binding could be distinguished from unspecific binding. Although applications in this work were focused on X. laevis oocytes and embryos, 3D-imaging on a beewolf head was also carried out in order to visualize the postpharyngeal gland. Additionally, an isolated beewolf antenna was imaged with a spatial resolution of (8 um)^3 for depiction of the antennal glands by using a microcoil that was specially designed for this sample. The experiments carried out in this work show that commercially available MRM systems can be significantly optimized by using small sample-adapted RF coils and by parallel operation of multiple coils, by which the sample throughput and thus time-efficiency is increased. With this optimized setup, practical use was demonstrated in a number of new biological applications.},
  subject      = {Magnetische Resonanz},
  language  = {en}
}
@article{SessiSilkinNechaevetal.2015,
  author    = {Sessi, Paolo and Silkin, Vyacheslav M. and Nechaev, Ilya A. and Bathon, Thomas and El-Kareh, Lydia and Chulkov, Evgueni V. and Echenique, Pedro M. and Bode, Matthias},
  title     = {Direct observation of many-body charge density oscillations in a two-dimensional electron gas},
  series = {Nature Communications},
  volume    = {6},
  journal   = {Nature Communications},
  number    = {8691},
  doi       = {10.1038/ncomms9691},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-145246},
  year      = {2015},
  abstract  = {Quantum interference is a striking manifestation of one of the basic concepts of quantum mechanics: the particle-wave duality. A spectacular visualization of this effect is the standing wave pattern produced by elastic scattering of surface electrons around defects, which corresponds to a modulation of the electronic local density of states and can be imaged using a scanning tunnelling microscope. To date, quantum-interference measurements were mainly interpreted in terms of interfering electrons or holes of the underlying band-structure description. Here, by imaging energy-dependent standing-wave patterns at noble metal surfaces, we reveal, in addition to the conventional surface-state band, the existence of an 'anomalous' energy band with a well-defined dispersion. Its origin is explained by the presence of a satellite in the structure of the many-body spectral function, which is related to the acoustic surface plasmon. Visualizing the corresponding charge oscillations provides thus direct access to many-body interactions at the atomic scale.},
  language  = {en}
}
@article{WinterAndelovicKampfetal.2021,
  author    = {Winter, Patrick M. and Andelovic, Kristina and Kampf, Thomas and Hansmann, Jan and Jakob, Peter Michael and Bauer, Wolfgang Rudolf and Zernecke, Alma and Herold, Volker},
  title     = {Simultaneous measurements of 3D wall shear stress and pulse wave velocity in the murine aortic arch},
  series = {Journal of Cardiovascular Magnetic Resonance},
  volume    = {23},
  journal   = {Journal of Cardiovascular Magnetic Resonance},
  number    = {1},
  doi       = {10.1186/s12968-021-00725-4},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-259152},
  pages     = {34},
  year      = {2021},
  abstract  = {Purpose Wall shear stress (WSS) and pulse wave velocity (PWV) are important parameters to characterize blood flow in the vessel wall. Their quantification with flow-sensitive phase-contrast (PC) cardiovascular magnetic resonance (CMR), however, is time-consuming. Furthermore, the measurement of WSS requires high spatial resolution, whereas high temporal resolution is necessary for PWV measurements. For these reasons, PWV and WSS are challenging to measure in one CMR session, making it difficult to directly compare these parameters. By using a retrospective approach with a flexible reconstruction framework, we here aimed to simultaneously assess both PWV and WSS in the murine aortic arch from the same 4D flow measurement. Methods Flow was measured in the aortic arch of 18-week-old wildtype (n = 5) and ApoE\(^{-/-}\) mice (n = 5) with a self-navigated radial 4D-PC-CMR sequence. Retrospective data analysis was used to reconstruct the same dataset either at low spatial and high temporal resolution (PWV analysis) or high spatial and low temporal resolution (WSS analysis). To assess WSS, the aortic lumen was labeled by semi-automatically segmenting the reconstruction with high spatial resolution. WSS was determined from the spatial velocity gradients at the lumen surface. For calculation of the PWV, segmentation data was interpolated along the temporal dimension. Subsequently, PWV was quantified from the through-plane flow data using the multiple-points transit-time method. Reconstructions with varying frame rates and spatial resolutions were performed to investigate the influence of spatiotemporal resolution on the PWV and WSS quantification. Results 4D flow measurements were conducted in an acquisition time of only 35 min. Increased peak flow and peak WSS values and lower errors in PWV estimation were observed in the reconstructions with high temporal resolution. Aortic PWV was significantly increased in ApoE\(^{-/-}\) mice compared to the control group (1.7 ± 0.2 versus 2.6 ± 0.2 m/s, p < 0.001). Mean WSS magnitude values averaged over the aortic arch were (1.17 ± 0.07) N/m\(^2\) in wildtype mice and (1.27 ± 0.10) N/m\(^2\) in ApoE\(^{-/-}\) mice. Conclusion The post processing algorithm using the flexible reconstruction framework developed in this study permitted quantification of global PWV and 3D-WSS in a single acquisition. The possibility to assess both parameters in only 35 min will markedly improve the analyses and information content of in vivo measurements.},
  language  = {en}
}