@phdthesis{Mahlmeister2023,
  author    = {Mahlmeister, Bernhard},
  title     = {Twisted Rylene Bisimides for Organic Solar Cells and Strong Chiroptical Response in the Near Infrared},
  doi       = {10.25972/OPUS-34610},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-346106},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2023},
  abstract  = {The chirality of the interlocked bay-arylated perylene motif is investigated upon its material prospect and the enhancement of its chiroptical response to the NIR spectral region. A considerable molecular library of inherently chiral perylene bisimides (PBIs) was utilized as acceptors in organic solar cells to provide decent device performances and insights into the structure-property relationship of PBI materials within a polymer blend. For the first time in the family of core-twisted PBIs, the effects of enantiopurity on the device performance was thoroughly investigated. The extraordinary structural sensitivity of CD spectroscopy served as crucial analytical tool to bridge the highly challenging gap between molecular properties and device analytics by proving the excitonic chirality of a helical PBI dimer. The chirality of this perylene motif could be further enhanced on a molecular level by both the expansion and the enhanced twisting of the π-scaffold to achieve a desirable strong chiroptical NIR response introducing a new family of twisted QBI-based nanoribbons. These achievements could be substantially further developed by expanding this molecular concept to a supramolecular level. The geometrically demanding supramolecular arrangement necessary for the efficient excitonic coupling was carefully encoded into the molecular design. Accordingly, the QBIs could form the first J-type aggregate constituting a fourfold-stranded superhelix of a rylene bisimide with strong excitonic chirality. Therefore, this thesis has highlighted the mutual corroboration of experimental and theoretical data from the molecular to the supramolecular level. It has demonstrated that for rylene bisimide dyes, the excitonic contribution to the overall chiroptical response can be designed and rationalized. This can help to pave the way for new organic functional materials to be used for chiral sensing or chiral organic light-emitting devices.},
  subject      = {Molek{\"u}l},
  language  = {en}
}
@article{MahlShoyamaKrauseetal.2020,
  author    = {Mahl, Magnus and Shoyama, Kazutaka and Krause, Ana-Maria and Schmidt, David and W{\"u}rthner, Frank},
  title     = {Base-Assisted Imidization: A Synthetic Method for the Introduction of Bulky Imide Substituents to Control Packing and Optical Properties of Naphthalene and Perylene Imides},
  series = {Angewandte Chemie International Edition},
  volume    = {59},
  journal   = {Angewandte Chemie International Edition},
  number    = {32},
  doi       = {10.1002/anie.202004965},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-218246},
  pages     = {13401 -- 13405},
  year      = {2020},
  abstract  = {We report the direct imidization of naphthalene and perylene dicarboxylic anhydrides/esters with bulky ortho,ortho-diaryl- and ortho,ortho-dialkynylaniline derivatives. This imidization method uses n-butyllithium as a strong base to increase the reactivity of bulky amine derivatives, proceeds under mild reaction conditions, requires only stoichiometric amounts of reactants and gives straightforward access to new sterically crowded rylene dicarboximides. Mechanistic investigations suggest an isoimide as intermediary product, which was converted to the corresponding imide upon addition of an aqueous base. Single-crystal X-ray diffraction analyses reveal dimeric packing motifs for monoimides, while two-side shielded bisimides crystallize in isolated molecules without close π-π-interactions. Spectroscopic investigations disclose the influence of the bulky substituents on the optical properties in the solid state.},
  language  = {en}
}
@phdthesis{Mahl2023,
  author    = {Mahl, Magnus},
  title     = {Polycyclic Aromatic Dicarboximides as NIR Chromophores, Solid-State Emitters and Supramolecular Host Platforms},
  doi       = {10.25972/OPUS-23462},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-234623},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2023},
  abstract  = {The present thesis introduce different synthetic strategies towards a variety of polycyclic aromatic dicarboximides (PADIs) with highly interesting and diverse properties. This included tetrachlorinated, tetraaryloxy- and tetraaryl-substituted dicarboximides, fused acceptor‒donor(‒acceptor) structures as well as sterically shielded rylene and nanographene dicarboximides. The properties and thus the disclosure of structure‒property relationships of the resulting dyes were investigated in detail among others with UV‒vis absorption spectroscopy, fluorescence spectroscopy, cyclic voltammetry and single crystal X-ray analysis. For instance, some of the fused and substituted PADIs offer strong absorption of visible and near infrared (NIR) light, NIR emission and low-lying LUMO levels. On the contrary, intriguing optical features in the solid-state characterize the rylene dicarboximides with their bulky N-substituents, while the devised sterically enwrapped nanographene host offered remarkable complexation capabilities in solution.},
  subject      = {Organische Chemie},
  language  = {en}
}
@unpublished{MaghamiScheitlHoebartner2019,
  author    = {Maghami, Mohammad Ghaem and Scheitl, Carolin P. M. and H{\"o}bartner, Claudia},
  title     = {Direct in vitro selection of trans-acting ribozymes for posttranscriptional, site-specific, and covalent fluorescent labeling of RNA},
  series = {Journal of the American Chemical Society},
  journal   = {Journal of the American Chemical Society},
  doi       = {10.1021/jacs.9b10531},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-192333},
  year      = {2019},
  abstract  = {General and efficient tools for site-specific fluorescent or bioorthogonal labeling of RNA are in high demand. Here, we report direct in vitro selection, characterization, and application of versatile trans-acting 2'-5' adenylyl transferase ribozymes for covalent and site-specific RNA labeling. The design of our partially structured RNA pool allowed for in vitro evolution of ribozymes that modify a predetermined nucleotide in cis (i.e. intramolecular reaction), and were then easily engineered for applications in trans (i.e. in an intermolecular setup). The resulting ribozymes are readily designed for specific target sites in small and large RNAs and accept a wide variety of N6-modified ATP analogues as small molecule substrates. The most efficient new ribozyme (FH14) shows excellent specificity towards its target sequence also in the context of total cellular RNA.},
  language  = {en}
}
@article{MaghamiDeyLenzetal.2020,
  author    = {Maghami, Mohammad Ghaem and Dey, Surjendu and Lenz, Ann-Kathrin and H{\"o}bartner, Claudia},
  title     = {Repurpsing Antiviral Drugs for Orthogonal RNA-Catalyzed Labeling},
  series = {Angewandte Chemie, International Edition},
  volume    = {59},
  journal   = {Angewandte Chemie, International Edition},
  doi       = {10.1002/anie.202001300},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-205552},
  pages     = {9335-9339},
  year      = {2020},
  abstract  = {In vitro selected ribozymes are promising tools for site-specific labeling of RNA. Previously known nucleic acid catalysts attached fluorescently labeled adenosine or guanosine derivatives through 2',5'-branched phosphodiester bonds to the RNA of interest. Herein, we report new ribozymes that use orthogonal substrates, derived from the antiviral drug tenofovir, and attach bioorthogonal functional groups, as well as affinity handles and fluorescent reporter units through a hydrolytically more stable phosphonate ester linkage. The tenofovir transferase ribozymes were identified by in vitro selection and are orthogonal to nucleotide transferase ribozymes. As genetically encodable functional RNAs, these ribozymes may be developed for potential cellular applications. The orthogonal ribozymes addressed desired target sites in large RNAs in vitro, as shown by fluorescent labeling of E. coli 16S and 23S RNAs in total cellular RNA.},
  language  = {en}
}
@article{LuebtowMarciniakSchmiedeletal.2019,
  author    = {L{\"u}btow, Michael M. and Marciniak, Henning and Schmiedel, Alexander and Roos, Markus and Lambert, Christoph and Luxenhofer, Robert},
  title     = {Ultra-high to ultra-low drug loaded micelles: Probing host-guest interactions by fluorescence spectroscopy},
  series = {Chemistry - A European Journal},
  volume    = {25},
  journal   = {Chemistry - A European Journal},
  number    = {54},
  doi       = {10.1002/chem.201902619},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-206128},
  pages     = {12601-12610},
  year      = {2019},
  abstract  = {Polymer micelles are an attractive means to solubilize water insoluble compounds such as drugs. Drug loading, formulations stability and control over drug release are crucial factors for drug-loaded polymer micelles. The interactions between the polymeric host and the guest molecules are considered critical to control these factors but typically barely understood. Here, we compare two isomeric polymer micelles, one of which enables ultra-high curcumin loading exceeding 50 wt.\%, while the other allows a drug loading of only 25 wt.\%. In the low capacity micelles, steady-state fluorescence revealed a very unusual feature of curcumin fluorescence, a high energy emission at 510 nm. Time-resolved fluorescence upconversion showed that the fluorescence life time of the corresponding species is too short in the high-capacity micelles, preventing an observable emission in steady-state. Therefore, contrary to common perception, stronger interactions between host and guest can be detrimental to the drug loading in polymer micelles.},
  subject      = {Polymer-drug interaction},
  language  = {en}
}
@phdthesis{Lohr2008,
  author    = {Lohr, Andreas},
  title     = {Self-Assembly of Merocyanines : Thermodynamic and Kinetic Insights into the Formation of Well-Defined Dye Aggregates},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-28964},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2008},
  abstract  = {The present thesis demonstrates the potential of dipolar aggregation of merocyanine dyes as novel directional and specific supramolecular binding motif for the creation of more elaborate supramolecular architectures beyond simple dimers. Furthermore, the self-assembly studies into bis(merocyanine) nanorods gave new insights into the kinetics of morphogenesis in supramolecular aggregates.},
  subject      = {Supramolekulare Chemie},
  language  = {en}
}
@article{LiuVonhausenSchulzetal.2022,
  author    = {Liu, Bin and Vonhausen, Yvonne and Schulz, Alexander and H{\"o}bartner, Claudia and W{\"u}rthner, Frank},
  title     = {Peptide Backbone Directed Self-Assembly of Merocyanine Oligomers into Duplex Structures},
  series = {Angewandte Chemie International Edition},
  volume    = {61},
  journal   = {Angewandte Chemie International Edition},
  number    = {21},
  doi       = {10.1002/anie.202200120},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-318797},
  year      = {2022},
  abstract  = {The pseudopeptide backbone provided by N-(2-aminoethyl)-glycine oligomers with attached nucleobases has been widely utilized in peptide nucleic acids (PNAs) as DNA mimics. Here we demonstrate the suitability of this backbone for the formation of structurally defined dye stacks. Toward this goal a series of peptide merocyanine (PMC) dye oligomers connected to a N-(2-aminoethyl)-glycine backbone were prepared through peptide synthesis. Our concentration-, temperature- and solvent-dependent UV/Vis absorption studies show that under the control of dipole-dipole interactions, smaller-sized oligomers consisting of one, two or three dyes self-assemble into defined duplex structures containing two up to six chromophores. In contrast, upon further extension of the oligomer, the chosen peptide backbone cannot direct the formation of a defined duplex architecture anymore due to intramolecular aggregation between the dyes. For all aggregate species a moderate aggregation-induced emission enhancement is observed.},
  language  = {en}
}
@phdthesis{Liess2017,
  author    = {Liess, Andreas},
  title     = {Structure-Property Relationships of Merocyanine Dyes in the Solid State: Charge Transport and Exciton Coupling},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-152900},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2017},
  abstract  = {The present thesis demonstrates the importance of the solid state packing of dipolar merocyanine dyes with regard to charge transport and exciton coupling. Due to the charge transport theory for disordered materials, it is expected that high ground state dipole moments in amorphous thin films lead to low mobility values due to a broadening of the density of states. However, due to their inherent dipolarity, merocyanine dyes usually align in antiparallel dimers in an ordered fashion. The examination of twenty different molecules with ground state dipole moments up to 15.0 D shows that by a high dipolarity and well-defined sterics, the molecules pack in a highly regular two-dimensional brickwork-type structure, which is beneficial for hole transport. Utilization of these molecules for organic thin-film transistors (OTFTs) leads to hole mobility values up to 0.21 cm²/Vs. By fabrication of single crystal field-effect transistors (SCFETs) for the derivative showing the highest mobility values in OTFTs, even hole mobilities up to 2.34 cm²/Vs are achieved. Hence, merocyanine based transistors show hole mobility values comparable to those of conventional p-type organic semiconductors and therefore high ground state dipole moments are not necessarily disadvantageous regarding high mobility applications. By examination of a different series of ten merocyanine dyes with the same chromophore backbone but different donor substituents, it is demonstrated that the size of the donor has a significant influence on the optical properties of thin films. For small and rigid donor substituents, a hypsochromic shift of the absorption compared to the monomer absorption in solution is observed due to the card stack like packing of the molecules in the solid state. By utilization of sterical demanding or flexible donor substituents, a zig-zag type packing is observed, leading to a bathochromical shift of the absorption. These packing motifs and spectral shifts with an offset of 0.93 eV of the H- and J-bands comply with the archetype examples of H- and J-aggregates from Kasha's exciton theory.},
  subject      = {Exziton},
  language  = {en}
}
@phdthesis{LiebschergebBloehbaum2020,
  author    = {Liebscher [geb. Bl{\"o}hbaum], Julia},
  title     = {Side chain functional poly(2-oxazoline)s for biomedical applications},
  doi       = {10.25972/OPUS-20396},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-203960},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2020},
  abstract  = {The aim of the thesis was to develop water soluble poly(2-oxazoline) (POx) copolymers with new side group functionalities, which can be used for the formation of hydrogels in biomedical applications and for the development of peptide-polymer conjugates. First, random copolymers of the monomer MeOx or EtOx with ButEnOx and EtOx with DecEnOx were synthesized and characterized. The vinyl functionality brought into the copolymer by the monomers ButEnOx and DecEnOx would later serve for post-polymerization functionalization. The synthesized copolymers were further functionalized with thiols via post-polymerization functionalization using a newly developed synthesis protocol or with a protected catechol molecule for hydrogel formation. For the formation of peptide-polymer conjugates, a cyclic thioester, namely thiolactone acrylamide and an azlactone precursor, whose synthesis was newly developed, were attached to the side chain of P(EtOx-co-ButEnOx) copolymers. The application of the functionalized thiol copolymers as hydrogels using thiol-ene chemistry for cross-linking was demonstrated. The swelling behavior and mechanical properties were characterized. The hydrophilicity of the network as well as the cross-linking density strongly influenced the swelling behavior and the mechanical strength of the hydrogels. All hydrogels showed good cell viability results. The hydrogel networks based on MeOx and EtOx were loaded with two dyes, fluorescein and methylene blue. It was observed that the uptake of the more hydrophilic dye fluorescein depended more on the ability of the hydrogel to swell. In contrast, the uptake of the more hydrophobic dye methylene blue was less dependent on the swelling degree, but much more on the hydrophilicity of the network. For the potential application as cartilage glue, (biohybrid) hydrogels were synthesized based on the catechol-functionalized copolymers, with and without additional fibrinogen, using sodium periodate as the oxidizing agent. The system allowed for degradation due to the incorporated ester linkages at the cross-linking points. The swelling behavior as well as the mechanical properties were characterized. As expected, hydrogels with higher degrees of cross-linking showed less swelling and higher elastic modulus. The addition of fibrinogen however increased the elasticity of the network, which can be favorable for the intended application as a cartilage glue. Biological evaluation clearly demonstrated the advantage of degradable ester links in the hydrogel network, where chondrocytes were able to bridge the artificial gap in contrast to hydrogels without any ester motifs. Lastly, different ways to form peptide-polymer conjugates were presented. Peptides were attached with the thiol of the terminal cysteine group to the vinyl side chain of P(EtOx-co-ButEnOx) copolymers by radical thiol-ene chemistry. Another approach was to use a cyclic thioester, thiolactone, or an azlactone functionality to bind a model peptide via native chemical ligation. The two latter named strategies to bind peptides to POx side chains are especially interesting as one and in the case of thiolactone two free thiols are still present at the binding site after the reaction, which can, for example, be used for further thiol-ene cross-linking to form POx hydrogels. In summary, side functional poly(oxazoline) copolymers show great potential for numerous biomedical applications. The various side chain functionalities can be introduced by an appropriate monomer or by post-polymerization functionalization, as demonstrated. By their multi-functionality, hydrogel characteristics, such as cross-linking degree and mechanical strength, can be fine-tuned and adjusted depending on the application in the human body. In addition, the presented chemoselective and orthogonal reaction strategies can be used in the future to synthesize polymer conjugates, which can, for example, be used in drug delivery or in tissue regeneration.},
  subject      = {Polymere},
  language  = {en}
}
@article{LiaqatStillerMicheletal.2020,
  author    = {Liaqat, Anam and Stiller, Carina and Michel, Manuela and Sednev, Maksim V. and H{\"o}bartner, Claudia},
  title     = {N\(^6\)-Isopentenyladenosine in RNA Determines the Cleavage Site of Endonuclease Deoxyribozymes},
  series = {Angewandte Chemie International Edition},
  journal   = {Angewandte Chemie International Edition},
  edition   = {Early View},
  doi       = {10.1002/ange.202006218},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-212121},
  year      = {2020},
  abstract  = {RNA-cleaving deoxyribozymes can serve as selective sensors and catalysts to examine the modification state of RNA. However, site-specific endonuclease deoxyribozymes that selectively cleave posttranscriptionally modified RNA are extremely rare and their specificity over unmodified RNA is low. In this study, we report that the native tRNA modification N\(^6\)-isopentenyladenosine (i\(^6\)A) strongly enhances the specificity and has the power to reconfigure the active site of an RNA-cleaving deoxyribozyme. Using in vitro selection, we identified a DNA enzyme that cleaves i\(^6\)A-modified RNA at least 2500-fold faster than unmodified RNA. Another deoxyribozyme shows unique and unprecedented behaviour by shifting its cleavage site in the presence of the i\(^6\)A RNA modification. Together with deoxyribozymes that are strongly inhibited by i\(^6\)A, these results highlight intricate ways of modulating the catalytic activity of DNA by posttranscriptional RNA modifications.},
  language  = {en}
}
@article{LiaqatSednevStilleretal.2021,
  author    = {Liaqat, Anam and Sednev, Maksim V. and Stiller, Carina and H{\"o}bartner, Claudia},
  title     = {RNA-cleaving deoxyribozymes differentiate methylated cytidine isomers in RNA},
  series = {Angewandte Chemie International Edition},
  volume    = {60},
  journal   = {Angewandte Chemie International Edition},
  doi       = {10.1002/anie.202106517},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-256519},
  pages     = {19058-19062},
  year      = {2021},
  abstract  = {Deoxyribozymes are emerging as modification-specific endonucleases for the analysis of epigenetic RNA modifications. Here, we report RNA-cleaving deoxyribozymes that differentially respond to the presence of natural methylated cytidines, 3-methylcytidine (m\(^3\)C), N\(^4\)-methylcytidine (m\(^4\)C), and 5-methylcytidine (m\(^5\)C), respectively. Using in vitro selection, we found several DNA catalysts, which are selectively activated by only one of the three cytidine isomers, and display 10- to 30-fold accelerated cleavage of their target m\(^3\)C-, m\(^4\)C- or m\(^5\)C-modified RNA. An additional deoxyribozyme is strongly inhibited by any of the three methylcytidines, but effectively cleaves unmodified RNA. The mXC-detecting deoxyribozymes are programmable for the interrogation of natural RNAs of interest, as demonstrated for human mitochondrial tRNAs containing known m\(^3\)C and m\(^5\)C sites. The results underline the potential of synthetic functional DNA to shape highly selective active sites.},
  language  = {en}
}
@article{LiaqatSednevStilleretal.2021,
  author    = {Liaqat, Anam and Sednev, Maksim V. and Stiller, Carina and H{\"o}bartner, Claudia},
  title     = {RNA-Cleaving Deoxyribozymes Differentiate Methylated Cytidine Isomers in RNA},
  series = {Angewandte Chemie International Edition},
  volume    = {60},
  journal   = {Angewandte Chemie International Edition},
  number    = {35},
  doi       = {10.1002/anie.202106517},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-254544},
  pages     = {19058-19062},
  year      = {2021},
  abstract  = {Deoxyribozymes are emerging as modification-specific endonucleases for the analysis of epigenetic RNA modifications. Here, we report RNA-cleaving deoxyribozymes that differentially respond to the presence of natural methylated cytidines, 3-methylcytidine (m\(^3\)C), N\(^4\)-methylcytidine (m\(^4\)C), and 5-methylcytidine (m\(^5\)C), respectively. Using in vitro selection, we found several DNA catalysts, which are selectively activated by only one of the three cytidine isomers, and display 10- to 30-fold accelerated cleavage of their target m\(^3\)C-, m\(^4\)C- or m\(^5\)C-modified RNA. An additional deoxyribozyme is strongly inhibited by any of the three methylcytidines, but effectively cleaves unmodified RNA. The m\(^X\)C-detecting deoxyribozymes are programmable for the interrogation of natural RNAs of interest, as demonstrated for human mitochondrial tRNAs containing known m\(^3\)C and m\(^5\)C sites. The results underline the potential of synthetic functional DNA to shape highly selective active sites.},
  language  = {en}
}
@incollection{LiaqatSednevHoebartner2022,
  author    = {Liaqat, Anam and Sednev, Maksim V. and H{\"o}bartner, Claudia},
  title     = {In Vitro Selection of Deoxyribozymes for the Detection of RNA Modifications},
  series = {Ribosome Biogenesis: Methods and Protocols},
  booktitle = {Ribosome Biogenesis: Methods and Protocols},
  publisher = {Humana Press},
  isbn      = {978-1-0716-2501-9},
  doi       = {10.1007/978-1-0716-2501-9_10},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-279208},
  publisher      = {Universit{\"a}t W{\"u}rzburg},
  pages     = {167-179},
  year      = {2022},
  abstract  = {Deoxyribozymes are artificially evolved DNA molecules with catalytic abilities. RNA-cleaving deoxyribozymes have been recognized as an efficient tool for detection of modifications in target RNAs and provide an alternative to traditional and modern methods for detection of ribose or nucleobase methylation. However, there are only few examples of DNA enzymes that specifically reveal the presence of a certain type of modification, including N6-methyladenosine, and the knowledge about how DNA enzymes recognize modified RNAs is still extremely limited. Therefore, DNA enzymes cannot be easily engineered for the analysis of desired RNA modifications, but are instead identified by in vitro selection from random DNA libraries using synthetic modified RNA substrates. This protocol describes a general in vitro selection stagtegy to evolve new RNA-cleaving DNA enzymes that can efficiently differentiate modified RNA substrates from their unmodified counterpart.},
  language  = {en}
}
@phdthesis{Liaqat2022,
  author    = {Liaqat, Anam},
  title     = {Artificial Evolution of Nucleic Acid Catalysts and their Use for Studying RNA},
  doi       = {10.25972/OPUS-28311},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-283111},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2022},
  abstract  = {RNA molecules play diverse roles in biological systems. Post-transcriptional RNA modifications and dynamic structures enhance the functional diversity of RNA. A prerequisite for studying their biological significance is the availability of reliable methods for the detection of RNA modifications and structures. Several promising approaches have been developed in the last few decades; however, efficient, and versatile tools are still required to study the dynamic features of RNA. This thesis focuses on the development of nucleic acid catalysts as a tool to address the current needs in studying RNA. The major part of this thesis aimed at the development of deoxyribozymes as a tool for the detection of RNA modifications. Using in vitro selection from a random DNA library, we found deoxyribozymes that are sensitive to N 6 -isopentenyladenosine (i6A), a native tRNA modification and structural analogue of m6A. The in vitro evolution identified three classes of DNA enzymes: AA, AB08, and AC17 DNAzymes that showed distinct response to i6A modification and showed strong discrimination between structural analogues, i.e., m6A and i6A. In the continuation of the project, we attempted to develop RNA-cleaving deoxyribozymes that differentially respond to monomethylated cytidine isomers, 3-methylcytidine (m3C), N4 - methylcytidine (m4C), and 5-methylcytidine (m5C). Several deoxyribozymes were identified from in vitro selection, which are selective for a specific methylated cytidine isomer. The characterization of AL112, AM101, AN05, and AK104 catalysts confirmed the successful evolution of modification-specific and general deoxyribozymes that showed a broad substrate scope. In order to accelerate the DNAzymes discovery, a high throughput sequencing method (DZ-seq) was established that directly quantifies the RNA cleavage activity and cleavage site from deep sequencing data. The libraries contained information about cleavage status, cleavage site and sequence of deoxyribozymes and RNA substrate. The fraction cleaved (FC) data obtained from Dz-seq was validated for a subset of deoxyribozmes using conventional gel based kinetic assay and showed a good linear correlation (R2 = 0.91). Dz-seq possesses a great potential for the discovery of novel deoxyribozymes for the analysis of various RNA modifications in the future. The second objective of the current study was the development of structure-specific RNA labeling ribozymes. Here, we attempted to develop ribozymes that targets RNA of interest by structure-specific interaction rather than base-pairing and focused on a specific RNA G-quadruplex as the target. Two subsequent selection experiments led to the identification of the adenylyltransferase ribozymes AO10.2 and AR9. The partial characterization of these catalysts showed that A010.2 was unable to recognize intact BCL2 structure, but it turned out as the first reported trans-active ribozyme that efficiently labeled uridine in a defined substrate RNA hybridized to the ribozyme. The other ribozyme AR9 was shown to serve as a trans-active, self-labeling ribozyme that catalyzed adenylyl transferase reaction in the presence of the intact BCL2 sequence. Based on these preliminary findings, we envision that AR9 could potentially serve as a reporter RNA by self-labeling in the presence of an RNA G-quadruplex. However, both AO10.2 and AR9 still require more detailed characterization for their potential applications.},
  language  = {en}
}
@phdthesis{Li2009,
  author    = {Li, Xueqing},
  title     = {Hydrogen Bond-directed Self-assembly of Perylene Bisimide Organogelators},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-43727},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2009},
  abstract  = {Perylene bisimide (PBI) dyes are a widely used class of industrial pigments, and currently have gained significant importance for organic-based electronic and optical devices. Structural modification at the PBI core results in changes of the optical and electronic properties, which enable tailored functions. Moreover, the aggregation behavior of PBIs is alterable and controllable to achieve new materials, among which organogels are of particular interest because of their potential for applications as supramolecular soft materials. In this work, new PBI-based organic gelators were designed, synthesized, and characterized, and the aggregation behaviors under different conditions were intensively studied by various spectroscopic and microscopic methods. In chapter 2, a brief overview is given on the structural and functional features of organogel systems. The definition, formation and reversibility of organogels are introduced. Some examples on dye based organogel are selected, among which PBI-based organogelators reported so far are especially emphasized. Some basic knowledges of supramolecular chirality are also overviewed such as characterization, amplification, and symmetry breaking of the chiral aggregates. According to our former experiences, PBIs tend to form aggregates because the planer aromatic cores interact with one another by pi-pi interaction. In chapter 3, a new PBI molecule is introduced which possesses amide groups between the conjugated core and periphery alkyl chains. It is found that well oriented aggregates are formed by hydrogen bonding and the pi-pi interaction of the cores. These interactions enable the aggregates to grow in one-dimension forming very long fibers, and these fibers further intercross to 3D network structures, e.g., organogels. In comparison to the very few PBI-based gelators reported before, one advantage of this gelator is that, it is more versatile and can gelate a wide range of organic solvents. Moreover, the well-organized fibers that are composed of extended \&\#960;-stacks provide efficient pathways for n-type charge carriers. Interestingly, AFM studies reveal that the PBI molecules form well-defined helical fibers in toluene. Both left-handed (M) and right-handed (P) helicities can be observed without any preference for one handedness because the building block is intrinsically achiral. In chapter 4, we tried to influence the M/P enantiomeric ratio by applying external forces. For example, we utilized chiral solvents to generate chiral aggregates with a preferential handedness. AFM analysis of the helices showed that a enantiomeric ratio of about 60: 40 can be achieved by aggregation in chiral solvents R- or S-limonene. Moreover, the long aggregated fibres can align at macroscopic level in vortex flows upon rotary stirring In chapter 5, bulky tetra-phenoxy groups are introduced in the bay area of the PBI gelator. The conjugated core of the new molecule is now distorted because of the steric hindrance. UV/Vis studies reveal a J-type aggregation in apolar solvents like MCH due to intermolecular pi-pi-stacking and hydrogen-bonding interactions. Microscopic studies reveal formation of columnar aggregates in apolar solvent MCH, thus this molecule lacks the ability to form gels in this solvent, but form highly fluorescent lyotropic mesophases at higher concentration. On the other hand, in polar solvents like acetone and dioxane, participation of the solvent molecules in hydrogen bonding significantly reduced the aggregation propensity but enforced the gel formation. The outstanding fluorescence properties of the dye in both J-aggregated viscous lyotropic mesophases and bulk gel phases suggest very promising applications in photonics, photovoltaics, security printing, or as fluorescent sensors. In chapter 6, we did some studies on combining PBI molecules with inorganic gold nanorods. Gold nanorods were synthesized photochemically. By virtue of the thioacetate functionalized PBIs, the rods were connected end to end to form gold nanochains, which were characterized by absorption spectra and TEM measurement. Such chromophore-nanorod hybrids might be applied to guide electromagnetic radiation based on optical antenna technology.},
  subject      = {Perylenderivate},
  language  = {en}
}
@article{LeiningerLanzendoerferChristl1983,
  author    = {Leininger, H. and Lanzend{\"o}rfer, F. and Christl, Manfred},
  title     = {{\"U}ber die Reduktion des Benzvalenozonids zum cis-1,3-Cyclobutandimethanol mit LiAlH\(_4\)},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-58130},
  year      = {1983},
  abstract  = {No abstract available},
  subject      = {Organische Chemie},
  language  = {en}
}
@article{LehmannDechantWehetal.2020,
  author    = {Lehmann, Matthias and Dechant, Moritz and Weh, Dominik and Freytag, Emely},
  title     = {Metal Phthalocyanine-Fullerene Dyads: Promising Lamellar Columnar Donor-Acceptor Liquid Crystal Phases},
  series = {ChemPlusChem},
  volume    = {85},
  journal   = {ChemPlusChem},
  number    = {8},
  doi       = {10.1002/cplu.202000540},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-218531},
  pages     = {1934 -- 1938},
  year      = {2020},
  abstract  = {Liquid crystal (LC) shape-amphiphiles with a disc tethered to a fullerene have been intensely studied for the application in photovoltaics, and helical nanosegregation of C\(_{60}\) has been claimed around the π-stacking disks based on X-ray results. The most promising materials reported to date have been resynthesized and studied comprehensively by XRS, density measurements, modelling, and electron density reconstruction. In contrast to previous reports, the results indicate that metal phthalocyanine-fullerene mesogens pack in lamellar columnar phases with p2gm symmetry. Fullerenes assemble in layers and are flanked by phthalocyanine columns, thus explaining the balanced charge carrier mobility of electrons and holes. Such variable donor-acceptor structures are promising for organic electronic applications.},
  language  = {en}
}
@article{LehmannBaumannLambovetal.2021,
  author    = {Lehmann, Matthias and Baumann, Maximilian and Lambov, Martin and Eremin, Alexey},
  title     = {Parallel polar dimers in the columnar self-assembly of umbrella-shaped subphthalocyanine mesogens},
  series = {Advanced Functional Materials},
  volume    = {31},
  journal   = {Advanced Functional Materials},
  number    = {38},
  doi       = {10.1002/adfm.202104217},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-256343},
  year      = {2021},
  abstract  = {The self-assembly of umbrella-shaped mesogens is explored with subphthalocyanine cores and oligo(thienyl) arms with different lengths in the light of their application as light-harvesting and photoconducting materials. While the shortest arm derivatives self-assemble in a conventional columnar phase with a single mesogen as a repeating unit, the more extended derivatives generate dimers that pile up into liquid crystalline columns. In contrast to the antiparallel arrangement known from single crystals, the present mesogens align as parallel dimers in polar columnar phases as confirmed by X-ray scattering, experimental densities, dielectric spectroscopy, second harmonic generation, alignment, and conductivity studies. UV-vis and fluorescence spectroscopies reveal a broad absorption in the visible range and only weak emission of the Q-band. Thus, these light-collecting molecules forming strongly polar columnar mesophases are attractive for application in the area of photoconductive materials.},
  language  = {en}
}
@article{LanzendoerferChristl1983,
  author    = {Lanzend{\"o}rfer, Franz and Christl, Manfred},
  title     = {3,4-Bismethylentricyclo[3.1.0.0<sup>2,6</sup>]hexan - Synthese und Diels-Alder-Addition an Tetracyanethylen},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-30263},
  year      = {1983},
  abstract  = {No abstract available},
  language  = {en}
}
@article{LambovHensiekPoeppleretal.2020,
  author    = {Lambov, Martin and Hensiek, Nicola and P{\"o}ppler, Ann-Christin and Lehmann, Matthias},
  title     = {Columnar Liquid Crystals from Star-Shaped Conjugated Mesogens as Nano-Reservoirs for Small Acceptors},
  series = {ChemPlusChem},
  volume    = {85},
  journal   = {ChemPlusChem},
  number    = {10},
  doi       = {10.1002/cplu.202000341},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-218014},
  pages     = {2219 -- 2229},
  year      = {2020},
  abstract  = {Shape-persistent conjugated mesogens with oligothiophene arms of different lengths have been synthesized. Such mesogens possess free intrinsic space between their conjugated arms. They form columnar liquid-crystalline phases, in which the void is filled by dense helical packing in the neat phase similar to an oligo(phenylene vinylene) derivative of equal size. The void can also be compensated by the inclusion of the small acceptor molecule 2,4,7-trinitrofluorenone. In solution, the acceptor interacts with the core as the largest π-surface, while in the solid material, it is incorporated between the arms and sandwiched by the star-shaped neighbours along the columnar assemblies. The TNF acceptors are not nanosegregated from the star-shaped donors, thus the liquid crystal structure converts to a nano-reservoir for TNF (endo-receptor). These host-guest arrangements are confirmed by comprehensive X-ray scattering experiments and solid-state NMR spectroscopy. This results in ordered columnar hexagonal phases at high temperatures, which change to helical columnar mesophases or to columnar soft crystals at room temperature.},
  language  = {en}
}
@unpublished{LambertVoelkerKochetal.2015,
  author    = {Lambert, Christoph and V{\"o}lker, Sebastian F. and Koch, Federico and Schmiedel, Alexander and Holzapfel, Marco and Humeniuk, Alexander and R{\"o}hr, Merle I. S. and Mitric, Roland and Brixner, Tobias},
  title     = {Energy Transfer Between Squaraine Polymer Sections: From helix to zig-zag and All the Way Back},
  series = {Journal of the American Chemical Society},
  journal   = {Journal of the American Chemical Society},
  doi       = {10.1021/jacs.5b03644},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-159607},
  year      = {2015},
  abstract  = {Joint experimental and theoretical study of the absorption spectra of squaraine polymers in solution provide evidence that two different conformations are present in solution: a helix and a zig-zag structure. This unique situation allows investigating ultrafast energy transfer processes between different structural segments within a single polymer chain in solution. The understanding of the underlying dynamics is of fundamental importance for the development of novel materials for light-harvesting and optoelectronic applications. We combine here femtosecond transient absorption spectroscopy with time-resolved 2D electronic spectroscopy showing that ultrafast energy transfer within the squaraine polymer chains proceeds from initially excited helix segments to zig-zag segments or vice versa, depending on the solvent as well as on the excitation wavenumber. These observations contrast other conjugated polymers such as MEH-PPV where much slower intrachain energy transfer was reported. The reason for the very fast energy transfer in squaraine polymers is most likely a close matching of the density of states between donor and acceptor polymer segments because of very small reorganization energy in these cyanine-like chromophores.},
  language  = {en}
}
@phdthesis{Kunz2018,
  author    = {Kunz, Valentin},
  title     = {Supramolecular Approaches for Water Oxidation Catalysis with Ruthenium Complexes},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-154820},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2018},
  abstract  = {The catalytic splitting of water into its elements is an important reaction to establish hydrogen as a solar fuel. The bottle-neck of this process is considered to be the oxidative half reaction generating oxygen, and good catalysts are required to handle the complicated redox chemistry involved. As can be learned from nature, the incorporation of the catalytically active species into an appropriate matrix can help to improve the overall performance. Thus, the aim of the present thesis was to establish novel supramolecular approaches to improve water oxidation catalysis using the catalytically active {Ru(bda)} fragment as key motive (bda = 2,2'-bipyridine-6,6'-dicarboxylate). First, the synthesis of ruthenium catalysts gathering three {Ru(bda)} water oxidation subunits in a macrocyclic fashion is described. By using bridging bipyridine ligands of different lengths, metallosupramolecular macrocycles with distinct sizes have been obtained. Interestingly, an intermediate ring size has been proven to be optimal for the catalytic water oxidation. Detailed kinetic, spectroscopic, and theoretical studies helped to identify the reaction mechanism and to rationalize the different catalytic activities. Furthermore, solubilizing side chains have been introduced for the most active derivative to achieve full water solubility. Secondly, the {Ru(bda)} fragment was embedded into supramolecular aggregates to generate more stable catalytic systems compared to a homogeneous reference complex. Therefore, the catalyst fragment was equipped with axial perylene bisimide (PBI) ligands, which facilitate self-assembly. Moreover, the influence of the different accessible aggregate morphologies on the catalytic performance has been investigated.},
  subject      = {Ruthenium Komplexe},
  language  = {en}
}
@article{KunzLabesWieseetal.2014,
  author    = {Kunz, Anna Lena and Labes, Antje and Wiese, Jutta and Bruhn, Torsten and Bringmann, Gerhard and Imhoff, Johannes F.},
  title     = {Nature's Lab for Derivatization: New and Revised Structures of a Variety of Streptophenazines Produced by a Sponge-Derived Streptomyces Strain},
  series = {Marine Drugs},
  volume    = {12},
  journal   = {Marine Drugs},
  number    = {4},
  issn      = {1660-3397},
  doi       = {10.3390/md12041699},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-116816},
  pages     = {1699-1714},
  year      = {2014},
  abstract  = {Eight streptophenazines (A-H) have been identified so far as products of Streptomyces strain HB202, which was isolated from the sponge Halichondria panicea from the Baltic Sea. The variation of bioactivities based on small structural changes initiated further studies on new derivatives. Three new streptophenazines (I-K) were identified after fermentation in the present study. In addition, revised molecular structures of streptophenazines C, D, F and H are proposed. Streptophenazines G and K exhibited moderate antibacterial activity against the facultative pathogenic bacterium Staphylococcus epidermidis and against Bacillus subtilis. All tested compounds (streptophenazines G, I-K) also showed moderate activities against PDE 4B.},
  language  = {en}
}
@phdthesis{Kriegisch2005,
  author    = {Kriegisch, Volker},
  title     = {Electron transfer processes between organic redox centres and electrodes via active bridges in self-assembled monolayers},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-15892},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2005},
  abstract  = {Cyclovoltammetrische Messungen der Ferrocenalkylthiole 1 - 3 belegen, dass homogene, gemischte Monolagen aus redoxaktiven Verbindungen und redoxinaktiven Alkylthiolen gebildet werden. Die von Creager et al. bestimmten ET Raten der Ferrocenalkylthiole 1 - 3 konnten hierbei verifiziert werden. Wie erwartet erfolgt eine Abnahme der ET Geschwindigkeit bei einer Kettenverl{\"a}ngerung des Alkylspacers von 2 nach 3. Eine unterschiedliche Konnektivit{\"a}t zwischen Redoxzentrum und Alkylspacer, z. B. die Einf{\"u}hrung einer Carbonyl-Funktion im Falle von 1, unter Beibehaltung der Kettenl{\"a}nge zeigt keinen bemerkbaren Einfluß auf den ET. Trotzt vergleichbaren Abstands der aromatischen Ferrocenthiole 4 und 5 zu der C8-Alkyl-Verbindung 2 zwischen Redoxzentrum und Elektrode, weisen diese aufgrund ihrer starken Konjugation sehr hohe ET Geschwindigkeiten auf. Die elektronischen Kopplungsfaktoren selbst deuten auf einen nichtadiabtischen ET zwischen Redoxzentrum und Elektrode hin. Wie erwartet kommt es zu einem Anwachsen der Kopplungsfaktoren bei sich verk{\"u}rzender Kettenl{\"a}nge oder bei Einf{\"u}hrung konjugierter Spacersysteme. Zusammenfassend kann gesagt werden, dass Erfahrungen hinsichtlich der Pr{\"a}paration der Monolagen gesammelt, die gemessenen ET Raten f{\"u}r der literaturbekannten Verbindungen 1 - 3 best{\"a}tigt und diese Informationen auf die konjugierten Verbindungen 4 und 5 angewandt werden konnten. Im zweiten Teil wurden die Triarylamin- (29, 32) und Phenothiazinalkylthiole (35) bez{\"u}glich ihres ET Verhaltens in gemischten Monolagen untersucht. Mittels Cyclovoltammetrie konnte gezeigt werden, daß einheitlich geformte, verd{\"u}nnte Monolagen vorliegen. Die ET Raten der Triarylamin- (29, 32) und Phenithiazinalkylthiole (35) sind jedoch um den Faktor 10 bis 100 h{\"o}her als vergleichbare Ferrocenalkylthiole gleicher Kettenl{\"a}nge [1, 2], wohingegen f{\"u}r Monolagen, welche [Ru(bpy)2(pp)]+-Alkythiole enthalten, {\"a}quivalente Werte gefunden wurden [3]. Die ET Geschwindigkeit wird von zwei Parametern beeinflusst: dem elektronischen Kopplungsmatrixelement und der Regorganisationsenergie \&\#61548;\&\#61472; [4]. Die ET Geschwindigkeit in Donor-substituierten Alkylthiolen wird haupts{\"a}chlich durch \&\#61548; beeinflusst und sogar kleine {\"A}nderungen dieser zeigen eine große Auswirkung auf die zu untersuchenden Prozesse. Aus diesem Grund wird eine Zunahme der ET Geschwindigkeit von Ferrocen (hohe Reorganisationsenergie) {\"u}ber die Phenothiazinverbindung 35 und [Ru(bpy)2(pp)]+ zu den Triarylaminchromophoren 29 und 32 (niedrige Reorganisationsenergie) beobachtet. Weiterhin spielt, im Gegensatz zu Beobachtung von Creager et al. an {\"a}quivalenten Ferrocenverbingungen, die Anbindung des Redoxzentrums an den Alkylspacer eine bedeutende Rolle. Im Falle der elektronenreichen Ether-verbr{\"u}ckten Verbindung 29 wird der ET nicht alleine durch \&\#61548;, sondern ebenso durch mesomere Effekte bestimmt. Bei 29 kommt es durch Lokalisation der positiven Ladung nahe der Ether Funktion formal zu einer Kettenverk{\"u}rzung um eine „Methyleneinheit", welche schließlich in h{\"o}heren ET Geschwindigkeiten resultiert. Im dritten Teil dieser Dissertation wurde ein Serie „molekularer Dr{\"a}hte" bestehend aus Methoxy- oder Chlorid-substituierten Triarylamin- und Phenothiazinverbindungen mit unterschiedlichen Br{\"u}ckeneinheiten und Br{\"u}ckenl{\"a}ngen zwischen Redoxzentrum und Ankerfunktion dargestellt und im Hinblick auf ihr ET Verhalten untersucht. Durch cyclovoltammetrische und UV/Vis-spektroskopische Untersuchungen konnte gezeigt werden, dass sowohl die Oxidationspotentiale als auch die energetischen Zust{\"a}nde der Chromophore recht gut durch Einf{\"u}hrung unterschiedlicher Redoxzentren und Br{\"u}ckeneinheiten beeinflusst werden k{\"o}nnen. Trotz erfolgreicher Kontrolle der Dichte der Chromophoreinheiten in den gemischten Monolagen konnte nur f{\"u}r die Verbindungen 49, 52 und 87 mit Nitril-substituierten Br{\"u}ckeneinheiten verl{\"a}ssliche ET Geschwindigkeiten erhalten werden. Bei diesen Chromphoren ist ein Absinken der ET Geschwindigkeit bei zunehmender Dichte der redoxaktiven Molek{\"u}le in den gemischten Monolagen zu beobachten, welche auf eine {\"A}nderung der Adsorptionsgeometrie hindeutet. Bei zunehmender Packungsdichte der Chromophore f{\"u}hrt dies zu einer aufrechteren Stellung der redoxaktiven Spezies. F{\"u}r alle anderen Verbindungen konnten keine Werte aufgrund der zu schnellen ET Geschwindigkeiten ermittelt werden. Konformelle, wie auch die sehr geringe Abstandsabh{\"a}ngigkeit des ET, resultieren in hohen ET Geschwindigkeiten oder auch ung{\"u}nstige HOMO-LUMO Energien bez{\"u}glich des Donors, der Br{\"u}cke und der Elektrode sind Gr{\"u}nde f{\"u}r dieses Verhalten. Die Tatsache, dass Verbindung 49 und 52 beinahe die gleichen Geschwindigkeitskonstanten des ETs unabh{\"a}ngig von der Anzahl der Br{\"u}ckeneinheiten (n = 2, n = 3) besitzen, deutet darauf hin, dass ein Hopping-Prozess stattfindet, bei welchem eine geringere L{\"a}ngenabh{\"a}ngigkeit des ETs als bei eine Superexchange-Mechanismus zu erwarten ist.},
  subject      = {Monoschicht},
  language  = {en}
}
@article{KrausGrimmSeibel2018,
  author    = {Kraus, Michael and Grimm, Clemens and Seibel, J{\"u}rgen},
  title     = {Reversibility of a Point Mutation Induced Domain Shift: Expanding the Conformational Space of a Sucrose Phosphorylase},
  series = {Scientific Reports},
  volume    = {8},
  journal   = {Scientific Reports},
  doi       = {10.1038/s41598-018-28802-2},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-224845},
  year      = {2018},
  abstract  = {Despite their popularity as enzyme engineering targets structural information about Sucrose Phosphorylases remains scarce. We recently clarified that the Q345F variant of Bifidobacterium adolescentis Sucrose Phosphorylase is able to accept large polyphenolic substrates like resveratrol via a domain shift. Here we present a crystal structure of this variant in a conformation suitable for the accommodation of the donor substrate sucrose in excellent agreement with the wild type structure. Remarkably, this conformation does not feature the previously observed domain shift which is therefore reversible and part of a dynamic process rather than a static phenomenon. This crystallographic snapshot completes our understanding of the catalytic cycle of this useful variant and will allow for a more rational design of further generations of Sucrose Phosphorylase variants.},
  language  = {en}
}
@phdthesis{Kraus2020,
  author    = {Kraus, Michael},
  title     = {The Conversion of Bifidobacterium adolescentis Sucrose Phosphorylase into a Polyphenol Transglucosidase via Structure-based Enzyme Engineering},
  doi       = {10.25972/OPUS-19247},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-192477},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2020},
  abstract  = {The initial goal was the conversion of Bifidobacterium adolescentis Sucrose Phosphorylase (BaSP) into a polyphenol glucosidase by structure based enzyme engineering. BaSP was chosen because of its ability to utilize sucrose, an economically viable and sustainable donor substrate, and transfer the glucosyl moiety to various acceptor substrates. The introduction of aromatic residues into the active site was considered a viable way to render it more suitable for aromatic acceptor compounds by reducing its polarity and potentially introducing π-π-interactions with the polyphenols. An investigation of the active site revealed Gln345 as a suitable mutagenesis target. As a proof of concept BaSP Q345F was employed in the glycosylation of (+)-catechin, (-)-epicatechin and resveratrol. The variant was selective for the aromatic acceptor substrates and the glucose disaccharide side reaction was only observed after almost quantitative conversion of the aromatic substrates. A crystal structure of BaSP Q345F in complex with glucose was obtained and it displayed an unexpected shift of an entire domain by 3.3 {\AA}. A crystal structure of BaSP D192N-Q345F, an inactive variant in complex with resveratrol-3-α-D-glucosid, the glucosylation product of resveratrol, synthesized by BaSP Q345F was solved. It proved that the domain shift is in fact responsible for the ability of the variant to glycosylate aromatic compounds. Simultaneously a ligand free crystal structure of BaSP Q345F disproved an induced fit effect as the cause of the domain shift. The missing link, a crystal structure of BaSP Q345F in the F-conformation is obtained. This does not feature the domain shift, but is in outstanding agreement with the wildtype structure. The domain shift is therefore not static but rather a step in a dynamic process. It is further conceivable that the domain shifted conformation of BaSP Q345F resembles the open conformation of the wild type and that an adjustment of a conformational equilibrium as a result of the Q345F point mutation is observed. An investigation into the background reaction, the formation of glucose-glucose disaccharides of BaSP Q345F and three further variants that addressed the same region (L341C, D316C-L341C and D316C-N340C) revealed the formation of nigerose by BaSP Q345F.},
  subject      = {Phosphorylase},
  language  = {en}
}
@article{KraftStanglKrauseetal.2017,
  author    = {Kraft, Andreas and Stangl, Johannes and Krause, Ana-Maria and M{\"u}ller-Buschbaum, Klaus and Beuerle, Florian},
  title     = {Supramolecular frameworks based on [60]fullerene hexakisadducts},
  series = {Beilstein Journal of Organic Chemistry},
  volume    = {13},
  journal   = {Beilstein Journal of Organic Chemistry},
  doi       = {10.3762/bjoc.13.1},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-171996},
  pages     = {1-9},
  year      = {2017},
  abstract  = {[60]Fullerene hexakisadducts possessing 12 carboxylic acid side chains form crystalline hydrogen-bonding frameworks in the solid state. Depending on the length of the linker between the reactive sites and the malonate units, the distance of the [60]fullerene nodes and thereby the spacing of the frameworks can be controlled and for the most elongated derivative, continuous channels are obtained within the structure. Stability, structural integrity and porosity of the material were investigated by powder X-ray diffraction, thermogravimetry and sorption measurements.},
  language  = {en}
}
@article{KorthMuellerSustmannetal.1987,
  author    = {Korth, H.-G. and M{\"u}ller, W. and Sustmann, R. and Christl, Manfred},
  title     = {Rearrangement of Free Radicals, XII. ESR Spectroscopic Study of the Ring Opening of the Homobenzvalenyl Radical},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-58376},
  year      = {1987},
  abstract  = {Abstraction of an allylic hydrogen atom in homobenzvalene (4) either in solurion by photolyticaßy generated tert-butoxyl radicals or in an adamantane matrix by X-rays produces the homobcnzvalenyl radical (5). which tbennally rearranps · to tbe tropylium ndical (1). In solution tbe activation cnergy for the rate determined step of the reaction sequence was detennined· to be 13.4 ± O.S kcal/mol.},
  subject      = {Organische Chemie},
  language  = {en}
}
@article{KoleKošćakAmaretal.2022,
  author    = {Kole, Goutam Kumar and Košćak, Marta and Amar, Anissa and Majhen, Dragomira and Božinović, Ksenija and Brkljaca, Zlatko and Ferger, Matthias and Michail, Evripidis and Lorenzen, Sabine and Friedrich, Alexandra and Krummenacher, Ivo and Moos, Michael and Braunschweig, Holger and Boucekkine, Abdou and Lambert, Christoph and Halet, Jean-Fran{\c{c}}ois and Piantanida, Ivo and M{\"u}ller-Buschbaum, Klaus and Marder, Todd B.},
  title     = {Methyl Viologens of Bis-(4'-Pyridylethynyl)Arenes - Structures, Photophysical and Electrochemical Studies, and their Potential Application in Biology},
  series = {Chemistry - A European Journal},
  volume    = {28},
  journal   = {Chemistry - A European Journal},
  number    = {40},
  doi       = {10.1002/chem.202200753},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-287126},
  year      = {2022},
  abstract  = {A series of bis-(4'-pyridylethynyl)arenes (arene=benzene, tetrafluorobenzene, and anthracene) were synthesized and their bis-N-methylpyridinium compounds were investigated as a class of π-extended methyl viologens. Their structures were determined by single crystal X-ray diffraction, and their photophysical and electrochemical properties (cyclic voltammetry), as well as their interactions with DNA/RNA were investigated. The dications showed bathochromic shifts in emission compared to the neutral compounds. The neutral compounds showed very small Stokes shifts, which are a little larger for the dications. All of the compounds showed very short fluorescence lifetimes (<4 ns). The neutral compound with an anthracene core has a quantum yield of almost unity. With stronger acceptors, the analogous bis-N-methylpyridinium compound showed a larger two-photon absorption cross-section than its neutral precursor. All of the dicationic compounds interact with DNA/RNA; while the compounds with benzene and tetrafluorobenzene cores bind in the grooves, the one with an anthracene core intercalates as a consequence of its large, condensed aromatic linker moiety, and it aggregates within the polynucleotide when in excess over DNA/RNA. Moreover, all cationic compounds showed highly specific CD spectra upon binding to ds-DNA/RNA, attributed to the rare case of forcing the planar, achiral molecule into a chiral rotamer, and negligible toxicity toward human cell lines at ≤10 μM concentrations. The anthracene-analogue exhibited intracellular accumulation within lysosomes, preventing its interaction with cellular DNA/RNA. However, cytotoxicity was evident at 1 μM concentration upon exposure to light, due to singlet oxygen generation within cells. These multi-faceted features, in combination with its two-photon absorption properties, suggest it to be a promising lead compound for development of novel light-activated theranostic agents.},
  language  = {en}
}
@article{KokicHillenTegunovetal.2021,
  author    = {Kokic, Goran and Hillen, Hauke S. and Tegunov, Dimitry and Dienermann, Christian and Seitz, Florian and Schmitzova, Jana and Farnung, Lucas and Siewert, Aaron and H{\"o}bartner, Claudia and Cramer, Patrick},
  title     = {Mechanism of SARS-CoV-2 polymerase stalling by remdesivir},
  series = {Nature Communications},
  volume    = {12},
  journal   = {Nature Communications},
  doi       = {10.1038/s41467-020-20542-0},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-220979},
  year      = {2021},
  abstract  = {Remdesivir is the only FDA-approved drug for the treatment of COVID-19 patients. The active form of remdesivir acts as a nucleoside analog and inhibits the RNA-dependent RNA polymerase (RdRp) of coronaviruses including SARS-CoV-2. Remdesivir is incorporated by the RdRp into the growing RNA product and allows for addition of three more nucleotides before RNA synthesis stalls. Here we use synthetic RNA chemistry, biochemistry and cryoelectron microscopy to establish the molecular mechanism of remdesivir-induced RdRp stalling. We show that addition of the fourth nucleotide following remdesivir incorporation into the RNA product is impaired by a barrier to further RNA translocation. This translocation barrier causes retention of the RNA 3ʹ-nucleotide in the substrate-binding site of the RdRp and interferes with entry of the next nucleoside triphosphate, thereby stalling RdRp. In the structure of the remdesivir-stalled state, the 3ʹ-nucleotide of the RNA product is matched and located with the template base in the active center, and this may impair proofreading by the viral 3ʹ-exonuclease. These mechanistic insights should facilitate the quest for improved antivirals that target coronavirus replication.},
  language  = {en}
}
@phdthesis{Klein2015,
  author    = {Klein, Johannes Hubert},
  title     = {Electron Transfer and Spin Chemistry in Iridium-Dipyrrin Dyads and Triads},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-118726},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2015},
  abstract  = {The successful synthesis of a family of donor-iridium complex-acceptor triads (T1-T6, pMV1 and mMV1) and their electrochemical and photophysical properties were presented in this work. Triarylamines (TAA) were used as donors and naphthalene diimide (NDI) as acceptor. A bis-cyclometalated phenylpyrazole iridium dipyrrin complex acts as a photosensitiser. In addition, a molecular structure of T1 was obtained by single crystal X-ray diffraction. Transient absorption spectroscopy experiments of these triads resembled that upon excitation a photoinduced electron transfer efficiently generates long-lived, charge-separated (CS) states. Thereby, the electron-transfer mechanism depends on the excitation energy. The presence of singlet and triplet CS states was clarified by magnetic-field dependent transient-absorption spectroscopy in the nanosecond time regime. It was demonstrated that the magnetic field effect of charge-recombination kinetics showed for the first time a transition from the coherent to the incoherent spin-flip regime. The lifetime of the CS states could be drastically prolonged by varying the spacer between the iridium complex and the NDI unit by using a biphenyl instead of a phenylene unit in T4. A mixed-valence (MV) state of two TAA donors linked to an iridium metal centre were generated upon photoexcitation of triad pMV1 and mMV1. The mixed-valence character in these triads was proven by the analysis of an intervalence charge-transfer (IV-CT) band in the (near-infrared) NIR spectral region by femtosecond pump-probe experiments. These findings were supported by TD-DFT calculations. The synthesis of dyads (D1-D4) was performed. Thereby the dipyrrin ligand was substituted with electron withdrawing groups. The electrochemical and photophysical characterisation revealed that in one case (D4) it was possible to generate a CS state upon photoexcitation.},
  subject      = {Elektronentransfer},
  language  = {en}
}
@article{KleiberLemusDiazStilleretal.2022,
  author    = {Kleiber, Nicole and Lemus-Diaz, Nicolas and Stiller, Carina and Heinrichs, Marleen and Mong-Quyen Mai, Mandy and Hackert, Philipp and Richter-Dennerlein, Ricarda and H{\"o}bartner, Claudia and Bohnsack, Katherine E. and Bohnsack, Markus T.},
  title     = {The RNA methyltransferase METTL8 installs m\(^3\)C\(_{32}\) in mitochondrial tRNAs\(^{Thr/Ser(UCN)}\) to optimise tRNA structure and mitochondrial translation},
  series = {Nature Communication},
  volume    = {13},
  journal   = {Nature Communication},
  doi       = {10.1038/s41467-021-27905-1},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-254592},
  year      = {2022},
  abstract  = {Modified nucleotides in tRNAs are important determinants of folding, structure and function. Here we identify METTL8 as a mitochondrial matrix protein and active RNA methyltransferase responsible for installing m\(^3\)C\(_{32}\) in the human mitochondrial (mt-)tRNA\(^{Thr}\) and mt-tRNA\(^{Ser(UCN)}\). METTL8 crosslinks to the anticodon stem loop (ASL) of many mt-tRNAs in cells, raising the question of how methylation target specificity is achieved. Dissection of mttRNA recognition elements revealed U\(_{34}\)G\(_{35}\) and t\(^6\)A\(_{37}\)/(ms\(^2\))i\(^6\)A\(_{37}\), present concomitantly only in the ASLs of the two substrate mt-tRNAs, as key determinants for METTL8-mediated methylation of C\(_{32}\). Several lines of evidence demonstrate the influence of U\(_{34}\), G\(_{35}\), and the m\(^3\)C\(_{32}\) and t\(^6\)A\(_{37}\)/(ms\(^2\))i\(^6\)A\(_{37}\) modifications in mt-tRNA\(^{Thr/Ser(UCN)}\) on the structure of these mt-tRNAs. Although mt-tRNA\(^{Thr/Ser(UCN)}\) lacking METTL8-mediated m\(^3\)C\(_{32}\) are efficiently aminoacylated and associate with mitochondrial ribosomes, mitochondrial translation is mildly impaired by lack of METTL8. Together these results define the cellular targets of METTL8 and shed new light on the role of m\(^3\)C\(_{32}\) within mt-tRNAs.},
  language  = {en}
}
@article{KirchnerSchrammIvanovaetal.2024,
  author    = {Kirchner, Philipp H. and Schramm, Louis and Ivanova, Svetlana and Shoyama, Kazutaka and W{\"u}rthner, Frank and Beuerle, Florian},
  title     = {A water-stable boronate ester cage},
  series = {Journal of the American Chemical Society},
  volume    = {146},
  journal   = {Journal of the American Chemical Society},
  number    = {8},
  issn      = {0002-7863},
  doi       = {10.1021/jacs.3c12002},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-361245},
  pages     = {5305-5315},
  year      = {2024},
  abstract  = {The reversible condensation of catechols and boronic acids to boronate esters is a paradigm reaction in dynamic covalent chemistry. However, facile backward hydrolysis is detrimental for stability and has so far prevented applications for boronate-based materials. Here, we introduce cubic boronate ester cages 6 derived from hexahydroxy tribenzotriquinacenes and phenylene diboronic acids with ortho-t-butyl substituents. Due to steric shielding, dynamic exchange at the Lewis acidic boron sites is feasible only under acid or base catalysis but fully prevented at neutral conditions. For the first time, boronate ester cages 6 tolerate substantial amounts of water or alcohols both in solution and solid state. The unprecedented applicability of these materials under ambient and aqueous conditions is showcased by efficient encapsulation and on-demand release of β-carotene dyes and heterogeneous water oxidation catalysis after the encapsulation of ruthenium catalysts.},
  language  = {en}
}
@phdthesis{Kirchner2019,
  author    = {Kirchner, Eva},
  title     = {Discrete Supramolecular Stacks by Self-Assembly and Folding of Bis(merocyanine) Dyes},
  doi       = {10.25972/OPUS-15941},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-159419},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2019},
  abstract  = {The present thesis describes the development of a strategy to create discrete finite-sized supramolecular stacks of merocyanine dyes. Thus, bichromophoric stacks of two identical or different chromophores could be realized by folding of bis(merocyanine) dyes and their optical properties were discussed in terms of exciton theory. Quantum chemical calculations revealed strong exciton coupling between the chromophores within the homo- and hetero-π-stacks and the increase of the J-band of the hetero-dimers with increasing energy difference between the excited states of the chromophores could be attributed not only to the different magnitudes of transition dipole moments of the chromophores but also to the increased localization of the excitation in the respective exciton state. Furthermore, careful selection of the length of the spacer unit that defines the interplanar distance between the tethered chromophores directed the self-assembly of the respective bis(merocyanines) into dimers, trimers and tetramers comprising large, structurally precise π-stacks of four, six or eight merocyanine chromophores. It could be demonstrated that the structure of such large supramolecular architectures can be adequately elucidated by commonly accessible analysis tools, in particular NMR techniques in combination with UV/vis measurements and mass spectrometry. Supported by TDDFT calculations, the absorption spectra of the herein investigated aggregates could be explained and a relationship between the absorption properties and the number of stacking chromophores could be established based on exciton theory.},
  subject      = {Merocyanine},
  language  = {en}
}
@phdthesis{KimbadiLombe2021,
  author    = {Kimbadi Lombe, Blaise},
  title     = {Novel-Type Dimeric Naphthylisoquinoline Alkaloids from Congolese Ancistrocladus Lianas: Isolation, Structural Elucidation, and Antiprotozoal and Anti-Tumoral Activities},
  doi       = {10.25972/OPUS-19178},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-191789},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2021},
  abstract  = {Herein described is the discovery of three novel types of dimeric naphthylisoquinoline alkaloids, named mbandakamines, cyclombandakamines, and spirombandakamines. They were found in the leaves of a botanically as yet unidentified, potentially new Ancistrocladus species, collected in the rainforest of the Democratic Republic of the Congo (DRC). Mbandakamines showed an exceptional 6′,1′′-coupling, in the peri-position neighboring one of the outer axes, leading to an extremely high steric hindrance at the central axis, and to U-turn-like molecular shape, which - different from all other dimeric NIQs, whose basic structures are all quite linear - brings three of the four bicyclic ring systems in close proximity to each other. This created an unprecedented follow-up chemistry, involving ring closure reactions, leading to two further, structurally even more intriguing subclasses, the cyclo- and the spirombandakamines, displaying eight stereogenic elements (the highest total number ever found in naphthylisoquinoline alkaloids). The metabolites exhibited pronounced antiplasmodial and antitrypanosomal activities. Likewise reported in this doctoral thesis are the isolation and structural elucidation of naphthylisoquinoline alkaloids from two further potentially new Ancistrocladus species from DRC. Some of these metabolites have shown pronounced antiausterity activities against human pancreatic cancer PANC-1 cells.},
  subject      = {Naphthylisochinolinalkaloide},
  language  = {en}
}
@article{KimSchembriBialasetal.2022,
  author    = {Kim, Jin Hong and Schembri, Tim and Bialas, David and Stolte, Matthias and W{\"u}rthner, Frank},
  title     = {Slip-Stacked J-Aggregate Materials for Organic Solar Cells and Photodetectors},
  series = {Advanced Materials},
  volume    = {34},
  journal   = {Advanced Materials},
  number    = {22},
  doi       = {10.1002/adma.202104678},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-276537},
  year      = {2022},
  abstract  = {Dye-dye interactions affect the optical and electronic properties in organic semiconductor films of light harvesting and detecting optoelectronic applications. This review elaborates how to tailor these properties of organic semiconductors for organic solar cells (OSCs) and organic photodiodes (OPDs). While these devices rely on similar materials, the demands for their optical properties are rather different, the former requiring a broad absorption spectrum spanning from the UV over visible up to the near-infrared region and the latter an ultra-narrow absorption spectrum at a specific, targeted wavelength. In order to design organic semiconductors satisfying these demands, fundamental insights on the relationship of optical properties are provided depending on molecular packing arrangement and the resultant electronic coupling thereof. Based on recent advancements in the theoretical understanding of intermolecular interactions between slip-stacked dyes, distinguishing classical J-aggregates with predominant long-range Coulomb coupling from charge transfer (CT)-mediated or -coupled J-aggregates, whose red-shifts are primarily governed by short-range orbital interactions, is suggested. Within this framework, the relationship between aggregate structure and functional properties of representative classes of dye aggregates is analyzed for the most advanced OSCs and wavelength-selective OPDs, providing important insights into the rational design of thin-film optoelectronic materials.},
  language  = {en}
}
@article{KimLiessStolteetal.2021,
  author    = {Kim, Jin Hong and Liess, Andreas and Stolte, Matthias and Krause, Ana-Maria and Stepanenko, Vladimir and Zhong, Chuwei and Bialas, David and Spano, Frank and W{\"u}rthner, Frank},
  title     = {An Efficient Narrowband Near-Infrared at 1040 nm Organic Photodetector Realized by Intermolecular Charge Transfer Mediated Coupling Based on a Squaraine Dye},
  series = {Advanced Materials},
  volume    = {33},
  journal   = {Advanced Materials},
  number    = {26},
  doi       = {10.1002/adma.202100582},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-256374},
  year      = {2021},
  abstract  = {A highly sensitive short-wave infrared (SWIR, λ > 1000 nm) organic photodiode (OPD) is described based on a well-organized nanocrystalline bulk-heterojunction (BHJ) active layer composed of a dicyanovinyl-functionalized squaraine dye (SQ-H) donor material in combination with PC\(_{61}\)BM. Through thermal annealing, dipolar SQ-H chromophores self-assemble in a nanoscale structure with intermolecular charge transfer mediated coupling, resulting in a redshifted and narrow absorption band at 1040 nm as well as enhanced charge carrier mobility. The optimized OPD exhibits an external quantum efficiency (EQE) of 12.3\% and a full-width at half-maximum of only 85 nm (815 cm\(^{-1}\)) at 1050 nm under 0 V, which is the first efficient SWIR OPD based on J-type aggregates. Photoplethysmography application for heart-rate monitoring is successfully demonstrated on flexible substrates without applying reverse bias, indicating the potential of OPDs based on short-range coupled dye aggregates for low-power operating wearable applications.},
  language  = {en}
}
@article{KimChristlKochl1990,
  author    = {Kim, E. and Christl, Manfred and Kochl, J. K.},
  title     = {Charge-Transfer Cycloaddition of Homobenzvalene with Tetracyanoethylene},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-58537},
  year      = {1990},
  abstract  = {The transient yellow color observed in the cycloaddition of homobenzvalene (HB) with tetracyanoethylene (TCNE) is associated with the charge-transfer complex [HB, TCNE). The deliberate photoexcitation of [HB,TCNE) affords a mixture of charge-transfer cycloadducts (1, 2, and 3) that differs from that obtained in thermal cycloaddition. The relationship of {HB t TCNE•) radical-ion pair (as the critical reactive intermediate in charge-transfer cycloaddition) to the activation process for thermal cycloaddition is discussed.},
  subject      = {Organische Chemie},
  language  = {en}
}
@phdthesis{Kiendl2020,
  author    = {Kiendl, Benjamin},
  title     = {Application of diamond nanomaterials in catalysis},
  doi       = {10.25972/OPUS-17941},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-179415},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2020},
  abstract  = {In this work the catalytic activity of nanodiamond particles with different dopants and surface terminations and of diamond nanomaterials funtionalized with ruthenium-based photocatalysts was investigated, illustrating materials application in photoredox chemistry and the photo(electro)catalytic reduction of CO2. Regarding the application of diamond nanomaterials in photocatalysis, methods to fabricate and characterize several (un)doped nanoparticles with different surface termination were successfully developed. Various photocatalysts, attached to nanodiamond particles via linker systems, were tested in photoredox catalysis and the photo(electro)catalytic reduction of CO2.},
  subject      = {Fotokatalyse},
  language  = {en}
}
@article{KauppSchleyer1992,
  author    = {Kaupp, Martin and Schleyer, Paul von Rague},
  title     = {Do Low-Coordinated Group 1-3 cations M\(^n\) \(^+\)L\(_m\) (Mn\(^+\) = K\(^+\), Rb\(^+\), Cs\(^+\), Ca\(^{2+}\), Sr\(^{2+}\), Ba\(^{2+}\), Sc\(^{3+}\), Y\(^{3+}\), La\(^{3+}\); L = NH\(_3\), H\(_2\)0, HF; m = 1-3) with a Formal Noble-Gas Electron Configuration Favor Regular or "Abnormal" Shapes?},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-60111},
  year      = {1992},
  abstract  = {No abstract available},
  subject      = {Anorganische Chemie},
  language  = {en}
}
@phdthesis{Kaufmann2019,
  author    = {Kaufmann, Christina},
  title     = {Discrete Supramolecular Architectures of Bay-linked Perylene Bisimide Dimers by Self-Assembly and Folding},
  doi       = {10.25972/OPUS-17300},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-173005},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2019},
  abstract  = {Supramolecular self-assembly of perylene bisimide (PBI) dyes via non-covalent forces gives rise to a high number of different PBI architectures with unique optical and functional properties. As these properties can be drastically influenced by only slightly structural changes of the formed supramolecular ensembles (Chapter 2.1) the controlled self-assembly of PBI dyes became a central point of current research to design innovative materials with a high potential for different applications as for example in the fields of organic electronics or photovoltaics. As PBI dyes show a strong tendency to form infinite aggregated structures (Chapter 2.2) the aim of this thesis was to precisely control their self-assembly to create small, structurally well-defined PBI assemblies in solution. Chapter 2.3 provides an overview on literature known strategies that were established to realize this aim. It could be demonstrated that especially backbone-directed intra- and intermolecular self-assembly of covalently linked Bis-PBI dyes evolved as one of the most used strategies to define the number of stacked PBI chromophores by using careful designed spacer units with regard to their length and flexibility. By using conventional spectroscopic methods like UV/Vis and fluorescence experiments in combination with NMR measurements an in-depth comparison of the molecular and optical properties in solution both in the non-stacked and aggregated state of the target compounds could be elucidated to reveal structure-property relationships of different PBI architectures. Thus, it could be demonstrated, that spacer units that pre-organize two PBI chromophores with an inter-planar distance of r < 7 {\AA} lead to an intramolecular folding, whereas linker moieties with a length between 7 to 11 {\AA} result in an intermolecular self-assembly of the respective Bis-PBIs dyes via dimerization to form well-defined quadruple PBI pi-stacks. Hence, if the used spacer units ensure an inter-planar distance r > 14 {\AA} larger oligomeric PBI pi-stacks are generated. In Chapter 4 a detailed analysis of the exciton coupling in a highly defined H-aggregate quadruple PBI pi-stack is presented. Therefore, bay-tethered PBI dye Bis-PBI 1 was investigated by concentration-dependent UV/Vis spectroscopy in THF and toluene as well as by 2D-DOSY-NMR spectroscopy, ESI mass spectrometry and AFM measurements confirming that Bis-PBI 1 self-assembles exclusively into dimers with four closely pi-stacked PBI chromophores. Furthermore, with the aid of broadband fluorescence upconversion spectroscopy (FLUPS) ensuring broadband detection range and ultrafast time resolution at once, ultrafast Frenkel exciton relaxation and excimer formation dynamics in the PBI quadruple pi-stack within 1 ps was successfully investigated in cooperation with the group of Dongho Kim. Thus, it was possible to gain for the first time insights into the exciton dynamics within a highly defined synthetic dye aggregate beyond dimers. By analysing the vibronic line shape in the early-time transient fluorescence spectra in detail, it could be demonstrated that the Frenkel exciton is entirely delocalized along the quadruple stack after photoexcitation and immediately loses its coherence followed by the formation of the excimer state. In Chapter 5 four well-defined Bis-PBI folda-dimers Bis-PBIs 2-4 were introduced, where linker units of different length (r < 7 {\AA}) and steric demand were used to gain distinct PBI dye assemblies in the folded state. Structural elucidation based on in-depth UV/Vis, CD and fluorescence experiments in combination with 1D and 2D NMR studies reveals a stacking of the two PBI chromophores upon folding, where geometry-optimized structures obtained from DFT calculations suggest only slightly different arrangements of the PBI units enforced by the distinct spacer moieties. With the resulting optical signatures of Bis-PBIs 2-4 ranging from conventional Hj-type to monomer like absorption features, the first experimental proof of a PBI-based "null-aggregate" could be presented, in which long- and short-range exciton coupling fully compensate each other. Hence, the insights of this chapter pinpoint the importance of charge-transfer mediated short-range exciton coupling that can significantly influence the properties of pi-stacked PBI chromophores In the last part of this thesis (Chapter 6), spacer-controlled self-assembly of four bay-linked Bis-PBI dyes Bis-PBIs 5-8 into well-defined supramolecular architectures was investigated, where the final aggregate structures are substantially defined by the nature of the used spacer units. By systematically extending the backbone length from 7 to 15 {\AA} defining the inter-planar distance between the tethered chromophores, different assemblies from defined quadruple PBI pi-stacks to larger oligomeric pi-stacks could be gained upon aggregation. In conclusion, the synthesis of nine covalently linked PBI dyes in combination with a detailed investigation of their spacer-mediated self-assembly behaviour in solution concerning structure-properties-relationships was presented within this thesis. The results confirm a strong exciton coupling in different types of Bis-PBI architectures e.g. folda-dimers or highly defined quadruple pi-stacks, which significantly influences their optical properties upon self-assembly.},
  subject      = {Supramolekulare Chemie},
  language  = {en}
}
@article{KarnaGreinEngelsetal.1990,
  author    = {Karna, S.P. and Grein, F. and Engels, Bernd and Peyerimhoff, S.D.},
  title     = {Ab initio configuration-interaction studies of the ground state potential energy and hyperfine coupling constants of \(^{35}\)Cl\(_2^-\)},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-58869},
  year      = {1990},
  abstract  = {Potential energy and spectroscopic constants for the X\(^2 \sum^+ _\mu\) ground state of a;, were calculated by configuration-interaction (Cl) methods, using large basis sets with polarization and diffuse functions. From these CI wavefunctions, the isotropic (a\(_{iso}\)) and dipolar (A\(_{dip}\)) components of the hyperfine coupling constant were obtained. The effects of various s, p basis sets, polarization and diffuse functions, as well as the influence of reference configurations and configuration selection thresholds were investigated. The best values obtained are 35·31 G for a\(_{iso}\) and 29·440 for A\(_{dip}\)• tobe compared with experimental values of 37 ± 1 G and 32 ± 1 G, respectively. It is shown that the contributions to a1so of the K and L shells are opposite in sign, differing by about 4 G. Upon vibrational averaging, both a\(_{iso}\) and A\(_{dip}\) move towards smaller values as v increases. An adiabatic electron affinity of 2·46eV was obtained for CL\(_2\) , and a vertical electron detachment energy of 3·71 eV for Cl;.},
  subject      = {Organische Chemie},
  language  = {en}
}
@article{KarnaGreinEngelsetal.1989,
  author    = {Karna, S. and Grein, F. and Engels, Bernd and Peyerimhoff, S.D.},
  title     = {The hyperfine coupling constants of \(^{19}\)F\(_2\)},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-58817},
  year      = {1989},
  abstract  = {The isotropic (a\(_{iso}\)) and dipolar (A\(_{dip}\)) hyperfine coupling constants of 19F2 were obtained from MRD-CI wave functions using a variety of basis sets. In series I, increasing numbers of d functions were added to a 5s4p contracted Huzinaga!Dunning basis. In series II, the 5s3p basis set was uncontracted in several steps until 9s5p was reached, to which were added from one to three d-polarization functions. Cl parameters (selectioo threshoids and the number of reference coofiguratioos) were also varied. A study of the R dependence of aiso and Adip was perfonned. The best values obtained at R\(_e\) are 260 G for a\(_{iso}\) and 308 G for A\(_{dip}\)• compared with experimental values of about 280 G for a;10 and 320 G for A\(_{dip}\)·},
  subject      = {Organische Chemie},
  language  = {en}
}
@article{KarakStepanenkoAddicoatetal.2022,
  author    = {Karak, Suvendu and Stepanenko, Vladimir and Addicoat, Matthew A. and Keßler, Philipp and Moser, Simon and Beuerle, Florian and W{\"u}rthner, Frank},
  title     = {A Covalent Organic Framework for Cooperative Water Oxidation},
  series = {Journal of the American Chemical Society},
  volume    = {144},
  journal   = {Journal of the American Chemical Society},
  number    = {38},
  issn      = {0002-7863},
  doi       = {10.1021/jacs.2c07282},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-287591},
  pages     = {17661-17670},
  year      = {2022},
  abstract  = {The future of water-derived hydrogen as the "sustainable energy source" straightaway bets on the success of the sluggish oxygen-generating half-reaction. The endeavor to emulate the natural photosystem II for efficient water oxidation has been extended across the spectrum of organic and inorganic combinations. However, the achievement has so far been restricted to homogeneous catalysts rather than their pristine heterogeneous forms. The poor structural understanding and control over the mechanistic pathway often impede the overall development. Herein, we have synthesized a highly crystalline covalent organic framework (COF) for chemical and photochemical water oxidation. The interpenetrated structure assures the catalyst stability, as the catalyst's performance remains unaltered after several cycles. This COF exhibits the highest ever accomplished catalytic activity for such an organometallic crystalline solid-state material where the rate of oxygen evolution is as high as ∼26,000 μmol L\(^{-1}\) s\(^{-1}\) (second-order rate constant k ≈ 1650 μmol L s\(^{-1}\) g\(^{-2}\)). The catalyst also proves its exceptional activity (k ≈ 1600 μmol L s\(^{-1}\) g\(^{-2}\)) during light-driven water oxidation under very dilute conditions. The cooperative interaction between metal centers in the crystalline network offers 20-30-fold superior activity during chemical as well as photocatalytic water oxidation as compared to its amorphous polymeric counterpart.},
  language  = {en}
}
@article{KarGehrigAllampallyetal.2016,
  author    = {Kar, Haridas and Gehrig, Dominik W. and Allampally, Naveen Kumar and Fern{\´a}ndez, Gustavo and Laquai, Fr{\´e}d{\´e}ric and Ghosh, Suhrit},
  title     = {Cooperative supramolecular polymerization of an amine-substituted naphthalene-diimide and its impact on excited state photophysical properties},
  series = {Chemical Science},
  volume    = {7},
  journal   = {Chemical Science},
  number    = {2},
  doi       = {10.1039/c5sc03462k},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-191459},
  pages     = {1115-1120},
  year      = {2016},
  abstract  = {A donor-acceptor-donor (D-A-D) type naphthalene-diimide (NDI-H) chromophore exhibits highly cooperative J-aggregation leading to nanotubular self-assembly and gelation in n-decane, as demonstrated by UV/Vis, FT-IR, photoluminescence and microscopy studies. Analysis of temperature-dependent UV/Vis spectra using the nucleation-elongation model and FT-IR data reveals the molecular origin of the cooperative nature of the self-assembly. The supramolecular polymerization is initiated by H-bonding up to a degree of polymerization similar to 20-25, which in a subsequent elongation step promotes J-aggregation in orthogonal direction leading to possibly a sheet-like structure that eventually produces nanotubes. Time-resolved fluorescence and absorption measurements demonstrate that such a tubular assembly enables very effective delocalization of excited states resulting in a remarkably prolonged excited state lifetime.},
  language  = {en}
}
@phdthesis{Kaiser2009,
  author    = {Kaiser, Theo E.},
  title     = {J-Aggregates of Tetraphenoxy-Substituted Perylene Bisimide Dyes},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-43544},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2009},
  abstract  = {In dieser Doktorarbeit wurde gezeigt, dass die sehr begehrte J-Aggregation funktionaler Perylenbisimid-Chromophore durch geeignetes Design der monomeren Bausteine erreicht werden kann. Hierzu war einerseits die Selbstanordnung durch ein Zusammenwirken von Wasserstoffbr{\"u}cken und Pi-Pi-Wechselwirkungen zu beg{\"u}nstigen, und andererseits eine Anordnung in kolumnaren Stapeln zu verhindern, was durch Kern-Verdrillung mittels sterisch anspruchsvollen Substituenten gelang. Desweiteren gaben Selbstanordnungsstudien neue Einblicke in den dynamischen Aggregationsprozess niedrigdimensionaler langgestreckter Aggregate mit stark exzitonisch gekoppelten Chromophoren. Die Beziehung zwischen bekannten Cyaninfarbstoffen, wie der von THIATS mit dem vorliegenden PBI 1a wurde durch Absorptions- und Fluoreszenzspektroskopie bei Tieftemperaturen von 5 K bis Raumtemperatur untersucht. Die vormals beispiellosen funktionalen Eigenschaften der PBI-Aggregate, welche aus der J-artigen exzitonischen Kopplung herr{\"u}hren, sind vielversprechend f{\"u}r die Anwendung in optoelektronischen Bauteilen und f{\"u}r die Photovoltaik.},
  subject      = {Perylenbisdicarboximide <Perylen-3},
  language  = {en}
}
@article{KabingerStillerSchmitzovaetal.2021,
  author    = {Kabinger, Florian and Stiller, Carina and Schmitzov{\´a}, Jana and Dienemann, Christian and Kokic, Goran and Hillen, Hauke S. and H{\"o}bartner, Claudia and Cramer, Patrick},
  title     = {Mechanism of molnupiravir-induced SARS-CoV-2 mutagenesis},
  series = {Nature Structural \& Molecular Biology},
  volume    = {28},
  journal   = {Nature Structural \& Molecular Biology},
  doi       = {10.1038/s41594-021-00651-0},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-254603},
  pages     = {740-746},
  year      = {2021},
  abstract  = {Molnupiravir is an orally available antiviral drug candidate currently in phase III trials for the treatment of patients with COVID-19. Molnupiravir increases the frequency of viral RNA mutations and impairs SARS-CoV-2 replication in animal models and in humans. Here, we establish the molecular mechanisms underlying molnupiravir-induced RNA mutagenesis by the viral RNA-dependent RNA polymerase (RdRp). Biochemical assays show that the RdRp uses the active form of molnupiravir, β-d-\(N^4\)-hydroxycytidine (NHC) triphosphate, as a substrate instead of cytidine triphosphate or uridine triphosphate. When the RdRp uses the resulting RNA as a template, NHC directs incorporation of either G or A, leading to mutated RNA products. Structural analysis of RdRp-RNA complexes that contain mutagenesis products shows that NHC can form stable base pairs with either G or A in the RdRp active center, explaining how the polymerase escapes proofreading and synthesizes mutated RNA. This two-step mutagenesis mechanism probably applies to various viral polymerases and can explain the broad-spectrum antiviral activity of molnupiravir.},
  language  = {en}
}
@article{JansenOhlendorfErhardetal.2013,
  author    = {Jansen, Nils and Ohlendorf, Birgit and Erhard, Arlette and Bruhn, Torsten and Bringmann, Gerhard and Imhoff, Johannes F.},
  title     = {Helicusin E, Isochromophilone X and Isochromophilone XI: New Chloroazaphilones Produced by the Fungus Bartalinia robillardoides Strain LF550},
  series = {Marine Drugs},
  volume    = {11},
  journal   = {Marine Drugs},
  number    = {3},
  doi       = {10.3390/md11030800},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-129649},
  pages     = {800-816},
  year      = {2013},
  abstract  = {Microbial studies of the Mediterranean sponge Tethya aurantium led to the isolation of the fungus Bartalinia robillardoides strain LF550. The strain produced a number of secondary metabolites belonging to the chloroazaphilones. This is the first report on the isolation of chloroazaphilones of a fungal strain belonging to the genus Bartalinia. Besides some known compounds (helicusin A (1) and deacetylsclerotiorin (2)), three new chloroazaphilones (helicusin E (3); isochromophilone X (4) and isochromophilone XI (5)) and one new pentaketide (bartanolide (6)) were isolated. The structure elucidations were based on spectroscopic analyses. All isolated compounds revealed different biological activity spectra against a test panel of four bacteria: three fungi; two tumor cell lines and two enzymes.},
  language  = {en}
}
@article{IvanovaKoesterHolsteinetal.2021,
  author    = {Ivanova, Svetlana and K{\"o}ster, Eva and Holstein, Julian J. and Keller, Niklas and Clever, Guido H. and Bein, Thomas and Beuerle, Florian},
  title     = {Isoreticular crystallization of highly porous cubic covalent organic cage compounds},
  series = {Angewandte Chemie International Edition},
  volume    = {60},
  journal   = {Angewandte Chemie International Edition},
  number    = {32},
  doi       = {10.1002/anie.202102982},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-256462},
  pages     = {17455-17463},
  year      = {2021},
  abstract  = {Modular frameworks featuring well-defined pore structures in microscale domains establish tailor-made porous materials. For open molecular solids however, maintaining long-range order after desolvation is inherently challenging, since packing is usually governed by only a few supramolecular interactions. Here we report on two series of nanocubes obtained by co-condensation of two different hexahydroxy tribenzotriquinacenes (TBTQs) and benzene-1,4-diboronic acids (BDBAs) with varying linear alkyl chains in 2,5-position. n-Butyl groups at the apical position of the TBTQ vertices yielded soluble model compounds, which were analyzed by mass spectrometry and NMR spectroscopy. In contrast, methyl-substituted cages spontaneously crystallized as isostructural and highly porous solids with BET surface areas and pore volumes of up to 3426 m\(^2\) g\(^{-1}\) and 1.84 cm\(^3\) g\(^{-1}\). Single crystal X-ray diffraction and sorption measurements revealed an intricate cubic arrangement of alternating micro- and mesopores in the range of 0.97-2.2 nm that are fine-tuned by the alkyl substituents at the BDBA linker.},
  language  = {en}
}
@article{IrngartingerReimannLangetal.1990,
  author    = {Irngartinger, H. and Reimann, W. and Lang, R. and Christl, Manfred},
  title     = {Electron Density Distribution in a Bicyclo[l.l.0]butane},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-31576},
  year      = {1990},
  abstract  = {No abstract available},
  language  = {en}
}
@phdthesis{Huegel2018,
  author    = {H{\"u}gel, Markus},
  title     = {The control of nanomorphology in star-shaped mesogens},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-165321},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2018},
  abstract  = {Stilbene-based star-shaped mesogens have been synthesized with and without fullerene guests. Thermotropic properties and the mechanism of space-filling in the mesophases of these systems have been examined.},
  subject      = {Fl{\"u}ssigkristall},
  language  = {en}
}
@unpublished{HoebartnerSteinmetzgerPalanisamyetal.2018,
  author    = {H{\"o}bartner, Claudia and Steinmetzger, Christian and Palanisamy, Navaneethan and Gore, Kiran R.},
  title     = {A multicolor large Stokes shift fluorogen-activating RNA aptamer with cationic chromophores},
  series = {Chemistry - A European Journal},
  journal   = {Chemistry - A European Journal},
  doi       = {https://doi.org/10.1002/chem.201805882},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-174197},
  year      = {2018},
  abstract  = {Large Stokes shift (LSS) fluorescent proteins (FPs) exploit excited state proton transfer pathways to enable fluorescence emission from the phenolate intermediate of their internal 4 hydroxybenzylidene imidazolone (HBI) chromophore. An RNA aptamer named Chili mimics LSS FPs by inducing highly Stokes-shifted emission from several new green and red HBI analogs that are non-fluorescent when free in solution. The ligands are bound by the RNA in their protonated phenol form and feature a cationic aromatic side chain for increased RNA affinity and reduced magnesium dependence. In combination with oxidative functional-ization at the C2 position of the imidazolone, this strategy yielded DMHBO\(^+\), which binds to the Chili aptamer with a low-nanomolar K\(_D\). Because of its highly red-shifted fluorescence emission at 592 nm, the Chili-DMHBO\(^+\) complex is an ideal fluorescence donor for F{\"o}rster resonance energy transfer (FRET) to the rhodamine dye Atto 590 and will therefore find applications in FRET-based analytical RNA systems.},
  language  = {en}
}
@phdthesis{Hupp2003,
  author    = {Hupp, Thomas},
  title     = {Ab Initio Treatment of Complex Systems Kohn-Sham Orbitals for Multi Reference Methods and the Base Pairing Properties of Xanthine},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-8244},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2003},
  abstract  = {Die vorliegende Arbeit besteht aus zwei Teilen. Der erste untersucht die Eignung von LHF-Orbitalen f{\"u}r Multireferenzverfahren. Das Ziel dieses Teils ist eine effizientere Berechnung angeregter Zust{\"a}nde, was zur spektroskopischen Charakterisierung vieler organischer und bioorganischer Molek{\"u}le wichtig ist. Der zweite Teil befasst sich mit bioorganischen Fragestellungen und untersucht die Paarungseigenschaften der Purinbase Xanthin. Es wird unter anderem die unerwartet hohe Stabilit{\"a}t der Xanthin Selbstpaarung in Alanyl-PNA erkl{\"a}rt und es wird untersucht, auf welche Weise Xanthin in der DNA mutagene Fehlpaarungen mit Thymin eingehen kann. Teil1: Im Unterschied zu HF- und Standard-DFT-Methoden f{\"u}hrt der LHF-Ansatz zu einem vollst{\"a}ndig gebundenen Orbitalspektrum, da Coulomb-Selbstwechselwirkungen im LHF-Ansatz exakt korrigiert werden. Durch die Korrektur der Coulomb-Selbstwechselwirkungen sind im LHF-Ansatz auch die Energien der besetzten Orbitale nicht wie in Standard-DFT-Methoden zu h{\"o}heren Werten verschoben, so dass das Koopmans' Theorem g{\"u}ltig bleibt und die besetzten LHF-Orbitale etwas kompakter als Standard-DFT-Orbitale sind. Die vorliegende Arbeit zeigt, dass beide Eigenschaften deutliche Vorteile f{\"u}r MR-Verfahren darstellen. Die virtuellen LHF-Orbitale sind gut optimiert und erlauben eine effizienteBeschreibung sowohl angeregter Zust{\"a}nde als auch statischer Korrelationseffekte in MRCI und MRPT2-Ans{\"a}tzen. Weiterhin f{\"u}hrt die kompaktere Struktur der besetzten LHF-Orbitale zu einer besseren Beschreibung des kationischen Rumpfes von Rydbergzust{\"a}nden. Andererseits wurden zu beiden genannten Vorteilen auch jeweils ein Beispielmolek{\"u}l gefunden, in dem die Vorteile nicht zum Tragen kommen, und zu deren Beschreibung Orbitale aus HF- oder Standard-DFT-Methoden besser geeignet sind. Diese Beispiele zeigen, dass jeder Einzelfall f{\"u}r sich getestet werden muss, auch wenn die angeregten Zust{\"a}nde der meisten Molek{\"u}le sehr gut mit LHF-Orbitalen beschrieben werden k{\"o}nnen. Teil 2: Im zweiten Teil der vorliegenden Arbeit wurden die Paarungseigenschaften von Xanthin und Xanthinderivaten untersucht. Ziel dieses Teils war es, eine Erkl{\"a}rung f{\"u}r die unerwartet hohe Stabilit{\"a}t des Xanthin Alanyl-PNA Selbstpaarung zu finden. Weiterhin wurde untersucht, weshalb Xanthin, das in der DNA u.a. unter chemischem Stress gebildet wird, mutagene Fehlpaarungen mit der Pyrimidinbase Thymin eingehen kann. Stabilit{\"a}t der Xanthin Alanyl PNA: Zun{\"a}chst wurde durch den Vergleich experimenteller und berechneter 13C-NMR-Spektra das Regiosomer von Xanthin bestimmt, welches zu der ungew{\"o}hnlich hohen Stabilit{\"a}t der Xanthin-Xanthin-Selbstpaarung in Alanyl-PNA verantwortlich ist. Zur Untersuchung der Stabilit{\"a}t der Xanthin-Selbstpaarung wurde ein stark vereinfachendes Modell aufgestellt,in dem die Stabilit� at der PNA-Duplexe nur {\"u}ber die Energiebeitr{\"a}ge aus den Wasserstoffbr{\"u}cken (EDim) und der Basenstapelung (EStap) bestimmt wird. Die Dimerisierungs- und Stapelungsenergien unterschiedlicher Paarungen wurden mit DFT- und MP2-Methoden bestimmt. Solvenseffekte wurden {\"u}ber ein Kontinuummodell erfasst und der Einfluss des peptidischen R{\"u}ckgrats auf die Stapelungsgeometrie wurde durch Kraftfeldmethoden ber{\"u}cksichtigt. W{\"a}hrend die einzelnen Energiekomponenten aus den H-Br� ucken und der Basenstapelung keinen eindeutigen Zusammenhang zu den Schmelztemperaturen erkennen lassen, korreliert die Summe aus beiden linear mit den experimentell ermittelten Tm-Werten. Dies bedeutet, dass die Beitr{\"a}ge aus der Entropie, der molekularen Wasserumgebung und der R{\"u}ckgratspannung sich entweder aufheben oder f� ur alle behandelten Systeme sehr {\"a}hnlich sind. Die Stabilit{\"a}t der Xanthin-Xanthin- und die der 2,6-Diaminopurin-Xanthin-Paarung, ergibt sich durch einen erh{\"o}hten Stapelungsbeitrag der Purinpaarungen, w{\"a}hrend die Wasserstoffbr{\"u}cken der Xanthin Selbstpaarung nur wenig zur Stabilisierung des Xanthin-Xanthin und des Xanthin-Diaminopurin-Alanyl-PNA-Doppelstrangs beitragen. Paarungseigenschaften von N9-Xanthin: Zur Untersuchung der Paarungseigenschaften von N9-Xanthin wurden zun� achst H-verbr{\"u}ckte Homodimere von Xanthin untersucht. Hierbei wurden extreme Variationen in den Bindungsst{\"a}rken der einzelnen H-Br{\"u}cken gefunden, die sich zwischen -4 bis -11 kcal/mol in der Gasphase und -2.5 bis -5 kcal/mol im Solvens betragen. Durch Vergleich mit Modellsystemen konnte die starke Varianz der H-Br{\"u}ckenst{\"a}rke auf anziehende bzw. abstoßende sekund{\"a}re elektrostatische Wechselwirkungen zur{\"u}ckgef{\"u}hrt werden. Weiterhin wurde das Homodimer von Hypoxanthin untersucht, bei dem die H-Br{\"u}cken durch eine Erh{\"o}hung der Aromatizit{\"a}t im Pyrimidinring zus{\"a}tzlich verst{\"a}rkt werden, was zu einer deutlichen Stabilisierung des Dimers f{\"u}hrt. Elektronische Effekte m{\"u}ssen vor allem deshalb ber{\"u}cksichtigt werden, da sie im Unterschied zu rein elektrostatischen Effekten deutlich weniger von der Solvensumgebung beein usst werden. Mutagenit{\"a}t von Hypoxanthin und Xanthin: Zur Erkl{\"a}rung der Mutagenit{\"a}t von Hypoxanthin und Xanthin wurden verschiedene neutrale und anionische Watson-Crick Basenpaarungen von Hypoxanthin und Xanthin mit Pyrimidinbasen berechnet. Hierbei wurden u. a. auch tautomere und anionische Formen von Xanthin ber{\"u}cksichtigt. Zur Bewertung der erhaltenen Dimerisierungsenergien wurden die Paarungen danach klassifiziert, ob ihre Geometrien mit denen der kanonischen Basenpaarungen deckungsgleich sind, oder ob sie in einer verzerrten Watson-Crick Geometrie vorliegen, was die Einbaurate in die DNA aufgrund des r{\"a}umlichen Anspruchs der DNA-Polymerase vermindert. Die Rechnungen zeigen, dass Xanthin nur mit Cytosin Watson-Crick-Paarungen eingehen kann, welche jedoch nur sehr schwach gebunden sind. In der neutralen Form scheint eine dreiz{\"a}hnige Basenpaarung unter Beteiligung einer tautomeren Form des Xanthins etwas stabiler zu sein als die zweiz{\"a}hnige Paarung von Diketoxanthin mit Cytosin. Da die Dimerisierungsenergie sowohl der neutralen als auch der anionischen Basenpaarung nur wenig unter 0 kcal/mol liegt, ist der Einbau der Xanthin-Cytosin-Paarung in die DNA zwar aufgrund der g{\"u}nstigen Geometrie m{\"o}glich, wird aber nicht durch einen Energiebeitrag aus den H-Br{\"u}cken verst{\"a}rkt. Die im Vergleich zur Guanin-Cytosin Paarung deutlich geringere Aromatizit{\"a}t von Xanthin zu Cytosin ist im Einklang mit dem experimentellen Befund, dass die Cytosin-Xanthin Paarung deulich langsamer als die Guanin-Cytosin Paarungen in die DNA eingebaut werden. W{\"a}hrend die Rechnungen nur eine geringe Aromatizit{\"a}t von Xanthin zu Cytosin vorhersagen, scheint das Anion von Xanthin in der Lage zu sein, eine sehr stabile Basenpaarung mit Thymin einzugehen. Allerdings muss die Dimerisierungsenergie die schlechtere Anpassung in die Bindungstasche der DNA-Polymerase ausgleichen, da die Paarung in einer etwas verzerrten Watson-Crick Geometrie vorliegt. Insgesamt wird die Paarung daher nicht schneller in die DNA eingebaut, wie erwartet aufgrund der H-Br{\"u}ckenst{\"a}rken, stattdessen besitzt sie eine {\"a}hnliche Einbaurate wie die geometrisch g{\"u}nstigere aber weniger stabile Xanthin-Cytosin Paarung.},
  language  = {en}
}
@article{HuangSuterEngels1994,
  author    = {Huang, M.-B. and Suter, H. U. and Engels, Bernd},
  title     = {Theoretical Study of the Dimethylamino Radical (CH\(_3\))\(_2\)N and its protonated cation (CH\(_3\))\(_2\)NH\(^+\)},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-59047},
  year      = {1994},
  abstract  = {In the present work the dimethylamino radical ( ( CH\(_3\)) \(_2\)N) and its protonated cation ( ( CH\(_3\))\(_2\)NH\(^+\)) are investigated by means of ab initio methods. The geometries of various conformations of both compounds are obtained with UMP2/6·31 G** calculations, while the hyperfine structure and its dependence on the geometry is studied using the MRD-Cl/B\(_K\) method. The two molecules are compared to study the inftuence of the protonation on geometry and hyperfine structure. The effects of the rotational barriers on the hyperfine structures of (CH\(_3\))\(_2\)N, (CH\(_3\)CH\(_2\))\(_2\)N and ( (CH\(_3\))\(_2\)CH)\(_2\)N will be discussed.},
  subject      = {Organische Chemie},
  language  = {en}
}
@article{HongKimKimetal.2022,
  author    = {Hong, Yongseok and Kim, Woojae and Kim, Taeyeon and Kaufmann, Christina and Kim, Hyungjun and W{\"u}rthner, Frank and Kim, Dongho},
  title     = {Real-time Observation of Structural Dynamics Triggering Excimer Formation in a Perylene Bisimide Folda-dimer by Ultrafast Time-Domain Raman Spectroscopy},
  series = {Angewandte Chemie International Edition},
  volume    = {61},
  journal   = {Angewandte Chemie International Edition},
  number    = {13},
  doi       = {10.1002/anie.202114474},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-318788},
  year      = {2022},
  abstract  = {In π-conjugated organic photovoltaic materials, an excimer state has been generally regarded as a trap state which hinders efficient excitation energy transport. But despite wide investigations of the excimer for overcoming the undesirable energy loss, the understanding of the relationship between the structure of the excimer in stacked organic compounds and its properties remains elusive. Here, we present the landscape of structural dynamics from the excimer formation to its relaxation in a co-facially stacked archetypical perylene bisimide folda-dimer using ultrafast time-domain Raman spectroscopy. We directly captured vibrational snapshots illustrating the ultrafast structural evolution triggering the excimer formation along the interchromophore coordinate on the complex excited-state potential surfaces and following evolution into a relaxed excimer state. Not only does this work showcase the ultrafast structural dynamics necessary for the excimer formation and control of excimer characteristics but also provides important criteria for designing the π-conjugated organic molecules.},
  language  = {en}
}
@article{HomannTimmSeibel2012,
  author    = {Homann, Arne and Timm, Malte and Seibel, J{\"u}rgen},
  title     = {Chemo-enzymatic synthesis and in vitro cytokine profiling of tailor-made oligofructosides},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-76393},
  year      = {2012},
  abstract  = {Background It is well known that carbohydrates play fundamental roles in cell signaling and infection processes as well as tumor formation and progression. However, the interaction pathways and cellular receptors targeted by carbohydrates and glycoconjugates remain poorly examined and understood. This lack of research stems, at least to a major part, from accessibility problems of large, branched oligosaccharides. Results To test glycan - cell interactions in vitro, a variety of tailored oligosaccharides was synthesized chemo-enzymatically. Glycosyltransferases from the GRAS organisms Bacillus megaterium (SacB) and Aspergillus niger (Suc1) were used in this study. Substrate engineering of these glycosyltransferases generally acting on sucrose leads to the controlled formation of novel tailored di-, tri- and tetrasaccharides. Already industrially used as prebiotics in functional food, the immunogenic potential of novel oligosaccharides was characterized in this study. A differential secretion of CXCL8 and CCL2 was observed upon oligosaccharide co-cultivation with colorectal epithelial Caco-2 cells. Conclusion Pure carbohydrates are able to stimulate a cytokine response in human endothelial cells in vitro. The type and amount of cytokine secretion depends on the type of co-cultivated oligosaccharide.},
  subject      = {Chemie},
  language  = {en}
}
@article{HomannQamarSerimetal.2010,
  author    = {Homann, Arne and Qamar, Riaz-ul and Serim, Sevnur and Dersch, Petra and Seibel, Juergen},
  title     = {Bioorthogonal metabolic glycoengineering of human larynx carcinoma (HEp-2) cells targeting sialic acid},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-67806},
  year      = {2010},
  abstract  = {Sialic acids are located at the termini of mammalian cell-surface glycostructures, which participate in essential interaction processes including adhesion of pathogens prior to infection and immunogenicity. Here we present the synthesis and bioorthogonal metabolic incorporation of the sialic acid analogue N-(1-oxohex-5-ynyl)neuraminic acid (Neu5Hex) into the cell-surface glycocalyx of a human larynx carcinoma cell line (HEp-2) and its fluorescence labelling by click chemistry.},
  subject      = {Organische Chemie},
  language  = {en}
}
@phdthesis{Holzapfel2007,
  author    = {Holzapfel, Marco},
  title     = {Photoinduced Charge Transfer Processes in Triarylamine Based Redox Cascades},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-25276},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2007},
  abstract  = {In the first part of this work a new approach to measure transient absorption spectra of fluorescent compounds by means of laser flash photolysis technique was presented. Generally, the recorded transient absorption signal consists of transient absorption, fluorescence and ground state bleaching. Thus, for fluorescent chromophores a fluorescence correction is indispensable in order to obtain undisturbed absorption decay curves as well as accurate transient absorption spectra. Due to time response characteristics of the PMT detector the fluorescence contribution cannot be corrected by recording the fluorescence separately. Measuring two transient absorption signals with probe light differing in intensity, compounds with quantum yields up to ~ 35 \% can be investigated. This is a major improvement because transient absorption spectroscopy is a powerful method to gain insight into the kinetics and the energy of excited states and information in the time domain of fluorescence are no longer lost. In the second part the synthesis and the photophysical characterisation of redox cascades were reported. These cascades consist of an acridine acceptor and up to three triarylamine donor subunits. The redox potentials of the triarylamines were tuned by adequate substituents in the para-position of the phenyl ring to ensure a directed redox gradient. Upon photoexcitation a locally excited state or a CT state is populated which then injects a hole onto the adjacent donor and consequently results in a CS state. Fluorescence and transient absorption measurements revealed that HT depends strongly on donor strength and solvent polarity. Formation of a CS state was only observed in case of strong terminal donors or polar solvents. A low lying localised triplet state acts as an energy trap and quenches all CS states even in case of the cascade with the strongest terminal donor in very polar solvents. Furthermore, population of a CS state catalyses the formation of this triplet states which results in a shorter lifetime of the CS state compared to the lifetime of the CT state of the corresponding reference compound. Compared to redox cascades already reported in literature, the electronic coupling between the redox centres was decreased by sterical as well as electronic effects. To prolong the lifetime of the CS state saturated spacers on the one hand and a perpendicular orientation of the acceptor and the adjacent donor on the other hand were selected. The twisting of the subunits forming the CT state results in a higher degree of charge separation but its contribution to increase the lifetimes of the CS states is of minor importance. The longer lifetime of the CS states can be ascribed to the saturated spacers. Experimental data in combination with calculated values indicate that charge recombination takes place in the Marcus normal region by a superexchange mechanisms. Although charge recombination of the known cascades is located in the Marcus inverted region, these CS states decay faster than the CS states of the compounds investigated in this work.},
  subject      = {Ladungstransfer},
  language  = {en}
}
@article{HollmannWieseDennstaedtetal.2019,
  author    = {Hollmann, Claudia and Wiese, Teresa and Dennst{\"a}dt, Fabio and Fink, Julian and Schneider-Schaulies, J{\"u}rgen and Beyersdorf, Niklas},
  title     = {Translational approaches targeting ceramide generation from sphingomyelin in T cells to modulate immunity in humans},
  series = {Frontiers in Immunology},
  volume    = {10},
  journal   = {Frontiers in Immunology},
  number    = {2363},
  issn      = {1664-3224},
  doi       = {10.3389/fimmu.2019.02363},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-198806},
  year      = {2019},
  abstract  = {In T cells, as in all other cells of the body, sphingolipids form important structural components of membranes. Due to metabolic modifications, sphingolipids additionally play an active part in the signaling of cell surface receptors of T cells like the T cell receptor or the co-stimulatory molecule CD28. Moreover, the sphingolipid composition of their membranes crucially affects the integrity and function of subcellular compartments such as the lysosome. Previously, studying sphingolipid metabolism has been severely hampered by the limited number of analytical methods/model systems available. Besides well-established high resolution mass spectrometry new tools are now available like novel minimally modified sphingolipid subspecies for click chemistry as well as recently generated mouse mutants with deficiencies/overexpression of sphingolipid-modifying enzymes. Making use of these tools we and others discovered that the sphingolipid sphingomyelin is metabolized to ceramide to different degrees in distinct T cell subpopulations of mice and humans. This knowledge has already been translated into novel immunomodulatory approaches in mice and will in the future hopefully also be applicable to humans. In this paper we are, thus, summarizing the most recent findings on the impact of sphingolipid metabolism on T cell activation, differentiation, and effector functions. Moreover, we are discussing the therapeutic concepts arising from these insights and drugs or drug candidates which are already in clinical use or could be developed for clinical use in patients with diseases as distant as major depression and chronic viral infection.},
  language  = {en}
}
@article{HofmannFayezScheineretal.2020,
  author    = {Hofmann, Julian and Fayez, Shaimaa and Scheiner, Matthias and Hoffmann, Matthias and Oerter, Sabrina and Appelt-Menzel, Antje and Maher, Pamela and Maurice, Tangui and Bringmann, Gerhard and Decker, Michael},
  title     = {Sterubin: Enantioresolution and Configurational Stability, Enantiomeric Purity in Nature, and Neuroprotective Activity in Vitro and in Vivo},
  series = {Chemistry - A European Journal},
  volume    = {26},
  journal   = {Chemistry - A European Journal},
  number    = {32},
  doi       = {10.1002/chem.202001264},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-215993},
  pages     = {7299 -- 7308},
  year      = {2020},
  abstract  = {Alzheimer′s disease (AD) is a neurological disorder with still no preventive or curative treatment. Flavonoids are phytochemicals with potential therapeutic value. Previous studies described the flavanone sterubin isolated from the Californian plant Eriodictyon californicum as a potent neuroprotectant in several in vitro assays. Herein, the resolution of synthetic racemic sterubin (1) into its two enantiomers, (R)-1 and (S)-1, is described, which has been performed on a chiral chromatographic phase, and their stereochemical assignment online by HPLC-ECD coupling. (R)-1 and (S)-1 showed comparable neuroprotection in vitro with no significant differences. While the pure stereoisomers were configurationally stable in methanol, fast racemization was observed in the presence of culture medium. We also established the occurrence of extracted sterubin as its pure (S)-enantiomer. Moreover, the activity of sterubin (1) was investigated for the first time in vivo, in an AD mouse model. Sterubin (1) showed a significant positive impact on short- and long-term memory at low dosages.},
  language  = {en}
}
@article{HoernesFaserlJuenetal.2018,
  author    = {Hoernes, Thomas Philipp and Faserl, Klaus and Juen, Michael Andreas and Kremser, Johannes and Gasser, Catherina and Fuchs, Elisabeth and Shi, Xinying and Siewert, Aaron and Lindner, Herbert and Kreutz, Christoph and Micura, Ronald and Joseph, Simpson and H{\"o}bartner, Claudia and Westhof, Eric and H{\"u}ttenhofer, Alexander and Erlacher, Matthias David},
  title     = {Translation of non-standard codon nucleotides reveals minimal requirements for codon-anticodon interactions},
  series = {Nature Communications},
  volume    = {9},
  journal   = {Nature Communications},
  doi       = {10.1038/s41467-018-07321-8},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-321067},
  year      = {2018},
  abstract  = {The precise interplay between the mRNA codon and the tRNA anticodon is crucial for ensuring efficient and accurate translation by the ribosome. The insertion of RNA nucleobase derivatives in the mRNA allowed us to modulate the stability of the codon-anticodon interaction in the decoding site of bacterial and eukaryotic ribosomes, allowing an in-depth analysis of codon recognition. We found the hydrogen bond between the N1 of purines and the N3 of pyrimidines to be sufficient for decoding of the first two codon nucleotides, whereas adequate stacking between the RNA bases is critical at the wobble position. Inosine, found in eukaryotic mRNAs, is an important example of destabilization of the codon-anticodon interaction. Whereas single inosines are efficiently translated, multiple inosines, e.g., in the serotonin receptor 5-HT2C mRNA, inhibit translation. Thus, our results indicate that despite the robustness of the decoding process, its tolerance toward the weakening of codon-anticodon interactions is limited.},
  language  = {en}
}
@phdthesis{Hippius2007,
  author    = {Hippius, Catharina},
  title     = {Multichromophoric Arrays of Perylene Bisimide Dyes - Synthesis and Optical Properties},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-24767},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2007},
  abstract  = {The present work deals with the synthesis and the investigation of the photophysical properties of covalently constructed calix[4]arene-perylene bisimide dye arrays containing various PBI units. The obtained conjugates are characterized with respect towards their application in a new, zigzag-type architecture of artificial light-harvesting systems. For this purpose, orange (core-unsubstituted), red (6,7,11,12-tert-butylphenoxy-functionalized) and green (1,7-pyrrolidino-substituted) perylene bisimide building blocks have been attached to the calix[4]arene scaffold. First, the monochromophoric reference systems have been studied, and second, the photophysical properties of a comprehensive series of newly synthesized, multichromophoric calix[4]arene-perylene bisimide conjugates showing efficient energy transfer processes between the individual dye subunits have been investigated. Furthermore, a series of bichromophoric compounds containing identical chromophoric units has been obtained. Towards this goal, a variety of spectroscopic techniques such as UV/vis absorption, steady state and time-resolved fluorescence emission, and femtosecond transient absorption spectroscopy as well as a spectrotemporal analysis of the obtained data has been applied. This work presents a new concept for an artificial light-harvesting system positioning the dye units by means of calix[4]arene spacers along a zigzag chain. The investigations start with the syntheses and optical properties of the monochromophoric building blocks and result in an elaborate study on the energy and electron transfer processes occurring after photoexcitation in a comprehensive series of multichromophoric calix[4]arene-perylene bisimide conjugates. Finally, the photophysical properties of a series of compounds containing each two identical PBI units are discussed.},
  subject      = {Fluoreszenz-Resonanz-Energie-Transfer},
  language  = {en}
}
@article{HerbstSoberatsLeowanawatetal.2018,
  author    = {Herbst, Stefanie and Soberats, Bartolome and Leowanawat, Pawaret and Stolte, Matthias and Lehmann, Matthias and W{\"u}rthner, Frank},
  title     = {Self-assembly of multi-stranded perylene dye J-aggregates in columnar liquid-crystalline phases},
  series = {Nature Communications},
  volume    = {9},
  journal   = {Nature Communications},
  doi       = {10.1038/s41467-018-05018-6},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-319914},
  year      = {2018},
  abstract  = {Many discoid dyes self-assemble into columnar liquid-crystalline (LC) phases with packing arrangements that are undesired for photonic applications due to H-type exciton coupling. Here, we report a series of crystalline and LC perylene bisimides (PBIs) self-assembling into single or multi-stranded (two, three, and four strands) aggregates with predominant J-type exciton coupling. These differences in the supramolecular packing and optical properties are achieved by molecular design variations of tetra-bay phenoxy-dendronized PBIs with two N-H groups at the imide positions. The self-assembly is driven by hydrogen bonding, slipped π-π stacking, nanosegregation, and steric requirements of the peripheral building blocks. We could determine the impact of the packing motifs on the spectroscopic properties and demonstrate different J- and H-type coupling contributions between the chromophores. Our findings on structure-property relationships and strong J-couplings in bulk LC materials open a new avenue in the molecular engineering of PBI J-aggregates with prospective applications in photonics.},
  language  = {en}
}
@phdthesis{HerbstgebHoehne2019,
  author    = {Herbst [geb. H{\"o}hne], Stefanie},
  title     = {Liquid Crystalline Perylene Bisimide Assemblies},
  doi       = {10.25972/OPUS-16485},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-164857},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2019},
  abstract  = {Thus, the main focus of this thesis was to generate and investigate new one-dimensional LC PBI J-aggregates of an entirely new PBI organization with the transition dipole moments of the chromophores arranged parallel to the columnar axis and in slipped pi-pi stacking fashion to form highly fluorescent J-aggregates. Towards this goal, the tetra-bay substituted PBI 4c bearing free NH functional groups at the imide positions and four dendrons with branched ethylhexyl alkoxy chains at the meta-position of the phenoxy spacer (Figure 8.1a) was synthesized and compared to a literature known reference PBI 1. The mesogenic dendrons ensure LC character of the dye, which was confirmed by POM, DSC and extensive X-ray analysis. Furthermore, the sterically demanding bay-substituents prevent the cofacial assembly of the chromophores and force the dyes into a slipped pi-stacked order with the main transition dipole moments of the dyes oriented parallel to the columnar axis. X-ray analysis revealed that PBI 4c assembles into columnar triple-stranded helices consisting of side-to-side stacked molecules, which organize into a Colh phase (Figure 8.1b). FT-IR experiments of a thin film and aggregates in MCH solution confirmed the formation of H-bonds between the imide moieties. Temperature-dependent investigations furthermore proved a reversible formation of H-bonds and polarized FT-IR experiments finally gave evidence for the direction of the H-bonds along the shearing respective the columnar axis (Figure 8.1c). This was additionally verified by polarized UV-Vis absorption studies of aligned thin films. The changes in the UV-Vis absorption spectra of concentration- and temperature-dependent experiments in MCH are in agreement with the formation of J-aggregates and could be fitted to a nucleation-elongation growth mechanism. Remarkably, fluorescence spectroscopy studies revealed highly emissive aggregates in solution. These various spectroscopic techniques proved the utilization of directional noncovalent forces like hydrogen-bonding and pi-pi interactions in a cooperative manner forcing the PBI molecules in an unprecedented organization of a slipped pi-stacked arrangement with the orientation of the molecular axis and the respective transition dipole moments parallel to the columns of the LC phase. By the group of Dietrich the formation of exciton-polaritons in imprinted LC pillar microcavities as consequent use of the LC 4c was reported for the first time.In the second part of this thesis the hierarchical organization of LC PBIs into defined single-, double-, triple- and quadruple-stranded J-aggregates within crystalline and columnar LC phases, partially arranged in helical supramolecular structures in dependence of the molecular design was demonstrated. This was achieved via the preparation of a library of twelve molecules PBI 3-6(a-c) (Figure 8.2a) that was synthesized by varying the substitution position of the dendrons at the phenoxy-spacer from ortho to meta or para and by introducing an additional methyl group in ortho-position. Also the length and shape of the alkoxy chains was changed. Consequently, the impact of the sterical demand of the bay substituents concerning their phase properties, molecular arrangement and exciton coupling was investigated. POM, DSC and X-ray studies revealed the formation of only crystalline phase for the ortho-substituted PBIs 3a-c, whereas the other derivatives generated SC or LC phases. The main focus was the series with the n-C12-alkoxy chains. For the corresponding PBIs 4-6b columnar LC phases were confirmed. Retrostructural analysis by modelling and simulations gave indications for a single stranded organization for PBI 3b, a double-stranded helix for PBI 6b, a triple-stranded helical arrangement for PBI 5b and a quadruple-stranded helix for PBI 4b (Figure 8.2b-d). For all four derivatives the same molecular orientation within the columns as for PBI 4c was proven by polarized FT-IR and UV-Vis absorption studies in aligned thin films. The organization in helices of different number of strands in the Cr and LC phases of PBI 3b, 4b, 5b and 6b offered a unique possibility to elucidate the influence of particular packing arrangements on dye aggregate interactions with light. In particular, it can be investigated how exciton coupling of the dyes' transition dipole moments and fluorescence properties are affected. In this context, the spectroscopic properties were investigated in thin film, which revealed a strong bathochromic shift of the absorption maxima compared to the monomers in solution in dependence on the number of strands for PBIs 4-6b in contrast to PBI 3b (Figure 8.2e). The same tendency was observed for the respective aggregates in MCH solution. The spectral changes obtained during concentration- and temperature-dependent UV-Vis absorption studies verified the formation of J-aggregates in MCH solution and solid state. The respective aggregates are highly likely formed via a nucleation-elongation growth mechanism. Appliance of Kasha's exciton theory on the supramolecular aggregates revealed different contributions of H- and J-type coupling for the oligo-stranded helices. Under these considerations, it delivered an explanation for the absorption and fluorescence properties of the assemblies and declares the "best" J-aggregate for the double stranded arrangement of PBI 6b with purely negative couplings among neighbour molecules and a quantum yield above 74 \% of the aggregates in MCH solution. With this H-bonded PBI-based library approach of twelve derivatives it could be shown how molecular engineering of perylene bisimide dyes can be used to design defined, complex supramolecular assemblies with unprecedented packing patterns and concomitant intriguing spectroscopic properties. So far, the formation of defined liquid crystalline supramolecular structures of tetra-bay substituted PBIs by double H-bonding between free imide moieties and pi-pi interactions between the chromophores was demonstrated. The impact of the H-bonds on the molecular arrangement was investigated in the next part of this thesis. In this regard, PBIs 7 and 8 bearing a methyl or cyclohexyl group at the imide position (Figure 8.3a) were synthesized and compared to PBI 4c. The soft character of the solid state for PBIs 7 and 8 was confirmed by POM, DSC and X-ray analysis. The X-ray studies further revealed for both PBIs a change of the molecular assembly towards helical columnar structures of conventional pi-stacked chromophores (Figure 8.3b) when the directed H-bonds cannot contribute as noncovalent interactions to the assembly formation. Temperature-dependent UV-Vis absorption studies demonstrated the importance of H-bonding in MCH solution in the way that the formation of J-aggregates as for PBI 4c could not be observed for the imide substituted molecules. In the next step, the spectroscopic properties in thin film were investigated. For PBI 7 a J-type band and fluorescence spectra with an enlarged Stokes shift and increased fluorescence lifetime of 11.4 ns, compared to PBI 4c, was obtained, suggesting the generation of excimer type emission by considering the assumed conventional stacking of rotational displaced molecules from X-ray analysis. With polarized UV-Vis absorption experiments the orientation of the molecules perpendicular to the shearing direction and subsequently to the columnar axis was confirmed. These diverse investigations clearly demonstrated the imperative of H-bonds for stable, defined, LC J-aggregates with the transition dipole moments parallel to the columnar axis. With PBIs 7 and 8 it is impressively shown how small changes in the molecular structure influence the molecular arrangement dependent on the cooperation of non-covalent interactions like H-bonding and pi-pi stacking. In the last part of this thesis the generation of two-dimensional LC arrangements is presented. Since tetra-bay substituted PBIs lead always to twisted cores preventing lamellar arrangement, here 1,7-disubstitution and the simultaneous retention of the free imide positions was chosen to generate LC lamellar phases of PBIs 9a, 9b and 10 (Figure 8.4a). This molecular design was expected to form planar perylene cores that can strongly interact by pi-pi stacking and H-bonding. POM, DSC and X-ray investigations of the compounds suggest lamellar LC phases for PBIs 9a and 9b and a soft phase for PBI 10. In this regard, the goal of the formation of LC lamellar phase of PBIs could be attained. The change from dendrons with n-C12-alkoxy chains to large fork-like mesogens like in 9b clearly changed the phase properties. PBI 9b exhibits the lowest clearing point, high phase stability, least viscosity, easy shearability at room temperature and phase transitions between lamellar and Colh phases dependent on temperature. The formation of H-bonds parallel to the layers was demonstrated by polarized FT-IR experiments for all three PBIs. Concentration-dependent UV-Vis absorption studies revealed the formation of a J-type aggregate, which seems to exhibit an overall two-dimensional structure. With STM investigations the formation of lamellar structures from drop-casted 9a and 10 solutions in 1-phenyloctane on HOPG surface could be observed. Figure 8.4b illustrates a schematic possible arrangement of the molecules in the layers (here exemplarily demonstrated for PBI 9a), which has to be further confirmed by modelling and simulations. Unfortunately, fluorescence investigations of the thin films revealed non- or only slightly emissive LC states, which make them negligible for photonic applications. Nevertheless, the synthesized and analyzed compounds might be an inspiration for further investigations on the path to two-dimensional exciton transport for photonic devices.},
  subject      = {Fl{\"u}ssigkristall},
  language  = {en}
}
@phdthesis{Henn2004,
  author    = {Henn, Julian},
  title     = {The electron density : a bridge between exact quantum mechanics and fuzzy chemical concepts},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-9003},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2004},
  abstract  = {Summary The nature of the chemical bond is a topic under constant debate. What is known about individual molecular properties and functional groups is often taught and rationalized by explaining Lewis structures, which, in turn, make extensive use of the valence concept. The valence concept distinguishes between electrons, which do not participate in chemical interactions (core electrons) and those, which do (single, double, triple bonds, lone-pair electrons, etc.). Additionally, individual electrons are assigned to atomic centers. The valence concept is of paramount success: It allows the successful planning of chemical syntheses and analyses, it explains the behavior of individual functional groups, and, moreover, it provides the "language" to think of and talk about molecular structure and chemical interactions. The resounding success of the valence concept may be misleading to forget its approximative character. On the other hand, quantum mechanics provide in principle a quantitative description of all chemical phenomena, but there is no discrimination between electrons in quantum mechanics. From the quantum mechanical point of view there are only indistinguishable electrons in the field of the nuclei, i.e., it is impossible to assign a given electron to a particular center or to ascribe a particular purpose to individual electrons. The concept of indistinguishability of micro particles is founded on the Heisenberg uncertainty relation, which states, that wavepackets diverge in the 6N dimensional phase space, such that individual trajectories can not be identified. Hence it is a deep-rooted and approved physical concept. As an introduction to the present work density partitioning schemes were discussed, which divide the total molecular density into chemically meaningful areas. These partitioning schemes are intimately related to either the concepts of bound atoms in a molecule (as in the Atoms In Molecules theory (AIM) according to Bader or as in the Hirshfeld partitioning scheme) or to the concept of chemical structure in the sense of Lewis structures, which divide the total molecular density into core and valence density, where the valence density is split up again into bonding and non-bonding electron densities. Examples are early and recent loge theories, the topological analysis by means of the Electron Localization Function (ELF), and the Natural Bond Orbital (NBO) approach. Of these partitioning schemes, the theories according to Bader (AIM), to Becke and Edgecomb (ELF) and according to Weinhold (NBO and Natural Resonance Theory, NRT), respectively, were reviewed in detail critically. Points of criticism were explicated for each of the mentioned theories. Since theoretically derived electron densities are to be compared to experimentally derived densities, a brief introduction into the theory of X-ray di®raction experiments was given and the multipole formalism was introduced. The procedure of density refinement was briefly discussed. Various suggestions for improvements were developed: One strategy would be the employment of model parameters, which are to a maximum degree mutually orthogonal, with the object of minimizing correlations among the model parameters, e.g., to introduce nodal planes into the radial functions of the multipole model. A further suggestion involves the guidance of the iterative refinement procedure by an extremum principle, which states, that when di®erent solutions to the least squares minimization problem are available with about the same statistical measures of quality and with about the same residual density, then the solution is to prefer, which yields a minimum density at the bond critical point (BCP) and a maximum polarity in terms of the ratio of distances between the BCP and the nuclei. This suggestion is based on the well known fact, that the bond polarity (in terms of the ratio of distances between the BCP and the respective nuclei) is underestimated in the experiment. Another suggestion for including physical constraints is the explicit consideration of the virial theorem, e.g., by evaluating the integration of the Laplacian over the entire atomic basins and comparing this value to zero and to the value obtained from the integration of the electron gradient field over the atomic surface. The next suggestion was to explicitly use the electrostatic theorem of Feynman (often also denoted as Hellmann-Feynman theorem), which states, that the forces onto the nuclei can be calculated from the purely classical electrostatic forces of the electron distribution and the nuclei distribution. For a stationary system, these forces must add to zero. This also provides an internal quality criterion of the density model. This can be performed in an iterative way during the refinement procedure or as a test of the final result. The use of the electrostatic theorem is expected to reduce significantly correlations among static density parameters and parameters describing vibrations, since it is a valuable tool to discriminate between physically reasonable and artificial static electron densities. All of these mentioned suggestions can be applied as internal quality criteria. The last suggestion is based on the idea to initiate the experimental refinement with a set of model parameters, which is, as much as possible close to the final solution. This can be achieved by performing periodic boundary conditions calculations, from which theoretically created files are obtained, which contain the Miller indices (h, k, l) and the respective intensity I. This file is used for a model parameter estimation (refinement), which excludes vibrations. The resulting parameters can be used for the experimental refinement, where, in a first step, the density parameters are fixed to determine the parameters describing vibrations. For a fine tuning, again the electrostatic theorem and the other above mentioned suggestions could be applied. Theoretical predictions should not be biased by the method of computation. Therefore the dependence of the density analyzing tools on the level of calculation (method of calculation/basis set) and on the substituents in complex chemical bonding situations were evaluated in the second part of the present work. A number of compounds containing formal single and double sulfur nitrogen bonds was investigated. For these compounds, experimental data were also available. The calculated data were compared internally and with the experimental results. The internal comparison was drawn with regard to questions of convergency as well as with regard to questions of consistency: The resulting molecular properties from NBO/NRT analyses were found to be very stable, when the geometries were optimized at the respective level of theory. This stability is valid for variations in the methods of calculation as well as for variations in the basis set. Only the individual resonance weights of the contributing Natural Lewis Structures differed considerably depending on the level of calculation and depending on the substituents. However, the deviations were in both cases to a large extent within a limit which preserves the descending order of the leading resonance structure weights. The resulting bond orders, i.e., the total, covalent and ionic bond order from NRT calculations, were not affected by the shift in the resonance weights. The analysis of the bond topological parameters resulted in a discrimination between insensitive parameters and sensitive parameters. The stable parameters do neither depend strongly on the method of calculation nor on the basis set. Only minor variation occurs in the numerical values of these parameters, when the level of calculation is changed or even when other functional groups (H, Me, or tBu) are employed, as long as the methods of calculation do not drop considerably below a standard level. The bond descriptors of the sulfur nitrogen bonds were found to be also stable with respect to the functional groups R = H, R = Me, and R = tBu. Stable parameters are the bond distance, the density at the bond critical point (BCP) and the ratio of distances between the BCP and the nuclei A and B, which varies clearly when considering the formal bond type. For very small basis sets like the 3-21G basis set, this characteristic stability collapses. The sensitive parameters are based on the second derivatives of the density with respect to the coordinates. This is in accordance with the well known fact, that the total second derivative of the density with respect to the coordinates is a strongly oscillating function with positive as well as negative values. A profound deviation has to be anticipated as a consequence of strong oscillations. lambda3, which describes the local charge depletion in the direction of the interaction line, is the most varying parameter. A detailed analysis revealed that the position of the BCP in the rampant edge of the Laplacian distribution is responsible for the sensitivity of the numerical value of lambda3 in formal double bonds. Since the slope of the Laplacian assumes very high values in its rampant edge, a tiny displacement of the BCP leads already to a considerable change in lambda3. This instability is not a failure of the underlying theory, but it yields de facto to a considerable dependence of sensitive bond topological properties on the method of calculation and on the applied basis sets. Since the total second derivative is important to judge on the nature of the bond in the AIM theory (closed shell interactions versus shared interactions), the changes in lambda3 can lead to differing chemical interpretations. The comparison of theoretically derived bond topological properties of various sulfur nitrogen bonds provides the possibility to measure the self consistency of this data set. All data sets clearly exhibit a linear correlation between the bond distances and the density at the BCP on one hand and between the bond distances and the Laplacian values at the BCP on the other hand. These correlations were almost independent of the basis set size. In this context, the linear regression has to be regarded exclusively as a descriptive statistics tool. There is no correlation anticipated a priori. The formal bond type was found to be readily deducible from the theoretically obtained bond topological descriptors of the model systems. In this sense, the bond topological properties are self consistent despite of the numerical sensitivity of the derivatives, as exemplified above. Often, calculations are performed with the experimentally derived equilibrium geometries and not with optimized ones. Applying this approach, the computationally costly geometry optimizations are saved. Following this approach the bond topological properties were calculated using very flexible basis sets and employing the fixed experimental geometry (which, of course, includes the application of tBu groups). Regression coe±cients similar to those from optimized geometries were obtained for correlations between bond distances and the densities at the BCP as well as for the correlation between bond distances and the Laplacian at the BCP, i.e. the approach is valid. However, the data points scattered less and the coe±cient of correlation was clearly increased when geometry optimizations were performed beforehand. The comparison between data obtained from theory and experiment revealed fundamental discrepancies: In the data set of bond topological parameters from the experiment, the behavior of only 2 out of 3 insensitive parameters was comparable to the behavior of the theoretically obtained values, i.e. theoretical and experimental bond distances as well as theoretical and experimental densities at the BCP correlate. From the theoretically obtained data it was easy to deduce the formal bond type from the position of the BCP, since it changed in a systematic manner. The respective experimentally obtained values were almost constant and did not change systematically. For the SN bonds containing compounds, the total second derivative assumes exclusively negative values in the experiment. Due to the different internal behavior, experimentally and theoretically sensitive bond topological values could not be compared directly. The qualitative agreement in the Laplacian distribution, however, was excellent. In the third and last part of this work, the application to chemical systems follows. Formal hypervalent molecules, i.e. molecules where some atoms are considered to hold more than 8 electrons in their valence shell, were investigated. These were compounds containing sulfur nitrogen bonds (H(NtBu)2SMe, H2C{S(NtBu)2(NHtBu)}2, S(NtBu)2 and S(NtBu)3) and a highly coordinated silicon compound. The set of sulfur nitrogen compounds also contained a textbook example for valence expansion, the sulfur triimide. For these molecules, experimental reference values were available from high resolution X-ray experiments. The experimental results were in the case of the sulfur triimide not unique. Furthermore, from the experimental bond topological data no definite conclusion about the formal bonding type could be drawn. The situation of sulfur nitrogen bonds in the above mentioned set of molecules was analyzed in terms of a geometry discussion and by means of a topological analysis. The methyl-substituted isolated molecules served as model compounds. For the interpretation of the bonding situation additional NBO/NRT calculations were preformed for the sulfur nitrogen compounds and an ELF calculation and analysis was performed for the silicon compound. The ELF analysis included not only the presentation and discussion of the ELF-isosurfaces (eta = 0.85), but also the investigation of populations of disynaptic valence basins and the percentage contributions to these populations of the individual atoms when the disynaptic valence basins are split into atomic contributions according to Bader's partitioning scheme. The question of chemical interest was whether hypervalency is present in the set of molecules or not. In the first case the octet rule would be violated, in the second case Pauling's verdict would be violated. While the concept of hypervalency is well established in chemistry, the violation of Pauling's verdict is not. The quantitative numbers of the sensitive bond topological values from theory and experiment were not comparable, since no systematic relationship between the experimentally and theoretically determined sensitive bond descriptors was found. However, the insensitive parameters are in good agreement and the qualitative Laplacian distribution is, with few exceptions, in excellent agreement. The formal bonding type was deduced from experimental and theoretical topological data by considering the number and shape of valence shell charge concentrations in proximity to the sulfur and nitrogen centers. The results from NBO/NRT calculations confirmed the findings. All employed density analyzing tools AIM, ELF and NBO/NRT coincided in describing the bonding situation in the formally hypervalent molecules as highly polar. A comparison and analysis of experimentally and theoretically derived electron densities led consistently to the result, that regarding this set of molecules, hypervalency has to be excluded unequivocally.},
  subject      = {Elektronendichtebestimmung},
  language  = {en}
}
@article{HegmannChristlPetersetal.1988,
  author    = {Hegmann, Joachim and Christl, Manfred and Peters, Karl and Peters, Eva-Maria and Schnering, Hans Georg},
  title     = {Conjugated and Nonconjugated Cyclopentenones by a Reaction Cascade from Methyl 6-0xo-5-phenyl-1,3,4-oxadiazine-2-carboxylate and 1,3-Butadienes},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-30207},
  year      = {1988},
  abstract  = {No abstract available},
  language  = {en}
}
@article{HechtLeowanawatGerlachetal.2020,
  author    = {Hecht, Markus and Leowanawat, Pawaret and Gerlach, Tabea and Stepanenko, Vladimir and Stolte, Matthias and Lehmann, Matthias and W{\"u}rthner, Frank},
  title     = {Self-Sorting Supramolecular Polymerization: Helical and Lamellar Aggregates of Tetra-Bay-Acyloxy Perylene Bisimide},
  series = {Angewandte Chemie International Edition},
  volume    = {59},
  journal   = {Angewandte Chemie International Edition},
  number    = {39},
  doi       = {10.1002/anie.202006744},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-224586},
  pages     = {17084 -- 17090},
  year      = {2020},
  abstract  = {A new perylene bisimide (PBI), with a fluorescence quantum yield up to unity, self-assembles into two polymorphic supramolecular polymers. This PBI bears four solubilizing acyloxy substituents at the bay positions and is unsubstituted at the imide position, thereby allowing hydrogen-bond-directed self-assembly in nonpolar solvents. The formation of the polymorphs is controlled by the cooling rate of hot monomer solutions. They show distinctive absorption profiles and morphologies and can be isolated in different polymorphic liquid-crystalline states. The interchromophoric arrangement causing the spectral features was elucidated, revealing the formation of columnar and lamellar phases, which are formed by either homo- or heterochiral self-assembly, respectively, of the atropoenantiomeric PBIs. Kinetic studies reveal a narcissistic self-sorting process upon fast cooling, and that the transformation into the heterochiral (racemic) sheetlike self-assemblies proceeds by dissociation via the monomeric state.},
  language  = {en}
}
@phdthesis{Hecht2021,
  author    = {Hecht, Markus},
  title     = {Liquid-Crystalline Perylene Bisimide and Diketopyrrolopyrrole Assemblies},
  doi       = {10.25972/OPUS-21698},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-216987},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2021},
  abstract  = {The research presented in this thesis illustrates that self-assembly of organic molecules guided by intermolecular forces is a versatile bottom-up approach towards functional materials. Through the specific design of the monomers, supramolecular architectures with distinct spatial arrangement of the individual building blocks can be realized. Particularly intriguing materials can be achieved when applying the supramolecular approach to molecules forming liquid-crystalline phases as these arrange in ordered, yet mobile structures. Therefore, they exhibit anisotropic properties on a macroscopic level. It is pivotal to precisely control the interchromophoric arrangement as functions originate in the complex structures that are formed upon self-assembly. Consequently, the aim of this thesis was the synthesis and characterization of liquid-crystalline phases with defined supramolecular arrangements as well as the investigation of the structure-property relationship. For this purpose, perylene bisimide and diketopyrrolopyrrole chromophores were used as they constitute ideal building blocks towards functional supramolecular materials due to their thermal stability, lightfastness, as well as excellent optical and electronic features desirable for the application in, e.g., organic electronics.},
  subject      = {Selbstorganisation},
  language  = {en}
}
@phdthesis{HechtgebWagener2019,
  author    = {Hecht [geb. Wagener], Reinhard Johannes},
  title     = {Processing and Characterization of Bulk Heterojunction Solar Cells Based on New Organic n-Type Semiconductors},
  doi       = {10.25972/OPUS-16138},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-161385},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2019},
  abstract  = {This thesis established the fabrication of organic solar cells of DA dye donors and fullerene acceptors under ambient conditions in our laboratory, however, with reduced power conversion efficiencies compared to inert conditions. It was shown that moisture had the strongest impact on the stability and reproducibility of the solar cells. Therefore, utilization of robust materials, inverted device architectures and fast fabrication/characterization are recommended if processing takes place in air. Furthermore, the dyad concept was successfully explored in merocyanine dye-fullerene dyads and power conversion efficiencies of up to 1.14 \% and 1.59 \% were measured under ambient and inert conditions, respectively. It was determined that the major drawback in comparison to comparable BHJ devices was the inability of the dyad molecules to undergo phase separation. Finally, two series of small molecules were designed in order to obtain electron transport materials, using the acceptor-core-acceptor motive. By variation of the acceptor units especially the LUMO levels could be lowered effectively. Investigation of the compounds in organic thin film transistors helped to identify promising molecules with electron transport properties. Electron transport mobilities of up to 7.3 × 10-2 cm2 V-1 s-1 (ADA2b) and 1.39 × 10-2 cm2 V-1 s-1 (AπA1b) were measured in air for the ADA and AπA dyes, respectively. Investigation of selected molecules in organic solar cells proved that these molecules work as active layer components, even though power conversion efficiencies cannot compete with fullerene based devices yet. Thus, this thesis shows new possibilities that might help to develop and design small molecules as substitutes for fullerene acceptors.},
  subject      = {Heterosolarzelle},
  language  = {en}
}
@article{HeWuD'Avinoetal.2018,
  author    = {He, Tao and Wu, Yanfei and D'Avino, Gabriele and Schmidt, Elliot and Stolte, Matthias and Cornil, J{\´e}r{\^o}me and Beljonne, David and Ruden, P. Paul and W{\"u}rthner, Frank and Frisbie, C. Daniel},
  title     = {Crystal step edges can trap electrons on the surfaces of n-type organic semiconductors},
  series = {Nature Communications},
  volume    = {9},
  journal   = {Nature Communications},
  doi       = {10.1038/s41467-018-04479-z},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-227957},
  year      = {2018},
  abstract  = {Understanding relationships between microstructure and electrical transport is an important goal for the materials science of organic semiconductors. Combining high-resolution surface potential mapping by scanning Kelvin probe microscopy (SKPM) with systematic field effect transport measurements, we show that step edges can trap electrons on the surfaces of single crystal organic semiconductors. n-type organic semiconductor crystals exhibiting positive step edge surface potentials display threshold voltages that increase and carrier mobilities that decrease with increasing step density, characteristic of trapping, whereas crystals that do not have positive step edge surface potentials do not have strongly step density dependent transport. A device model and microelectrostatics calculations suggest that trapping can be intrinsic to step edges for crystals of molecules with polar substituents. The results provide a unique example of a specific microstructure-charge trapping relationship and highlight the utility of surface potential imaging in combination with transport measurements as a productive strategy for uncovering microscopic structure-property relationships in organic semiconductors.},
  language  = {en}
}
@article{HeStolteBurschkaetal.2015,
  author    = {He, Tao and Stolte, Matthias and Burschka, Christian and Hansen, Nis Hauke and Musiol, Thomas and K{\"a}lblein, Daniel and Pflaum, Jens and Tao, Xutang and Brill, Jochen and W{\"u}rthner, Frank},
  title     = {Single-crystal field-effect transistors of new Cl\(_{2}\)-NDI polymorph processed by sublimation in air},
  series = {Nature Communications},
  volume    = {6},
  journal   = {Nature Communications},
  number    = {5954},
  doi       = {10.1038/ncomms6954},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-149255},
  year      = {2015},
  abstract  = {Physical properties of active materials built up from small molecules are dictated by their molecular packing in the solid state. Here we demonstrate for the first time the growth of n-channel single-crystal field-effect transistors and organic thin-film transistors by sublimation of 2,6-dichloro-naphthalene diimide in air. Under these conditions, a new polymorph with two-dimensional brick-wall packing mode (\(\beta\)-phase) is obtained that is distinguished from the previously reported herringbone packing motif obtained from solution (\(\alpha\)-phase). We are able to fabricate single-crystal field-effect transistors with electron mobilities in air of up to 8.6 cm\(^{2}\)V\(^{-1}\)s\(^{-1}\) (\(\alpha\)-phase) and up to 3.5 cm\(^{2}\)V\(^{-1}\)s\(^{-1}\) (\(\beta\)-phase) on n-octadecyltriethoxysilane-modified substrates. On silicon dioxide, thin-film devices based on \(\beta\)-phase can be manufactured in air giving rise to electron mobilities of 0.37 cm\(^{2}\)V\(^{-1}\)s\(^{-1}\). The simple crystal and thin-film growth procedures by sublimation under ambient conditions avoid elaborate substrate modifications and costly vacuum equipment-based fabrication steps.},
  language  = {en}
}
@article{HattoriMichailSchmiedeletal.2019,
  author    = {Hattori, Yohei and Michail, Evripidis and Schmiedel, Alexander and Moos, Michael and Holzapfel, Marco and Krummenacher, Ivo and Braunschweig, Holger and M{\"u}ller, Ulrich and Pflaum, Jens and Lambert, Christoph},
  title     = {Luminescent Mono-, Di-, and Tri-radicals: Bridging Polychlorinated Triarylmethyl Radicals by Triarylamines and Triarylboranes},
  series = {Chemistry - A European Journal},
  volume    = {25},
  journal   = {Chemistry - A European Journal},
  number    = {68},
  doi       = {10.1002/chem.201903007},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-208162},
  pages     = {15463-15471},
  year      = {2019},
  abstract  = {Up to three polychlorinated pyridyldiphenylmethyl radicals bridged by a triphenylamine carrying electron withdrawing (CN), neutral (Me), or donating (OMe) groups were synthesized and analogous radicals bridged by tris(2,6-dimethylphenyl)borane were prepared for comparison. All compounds were as stable as common closed-shell organic compounds and showed significant fluorescence upon excitation. Electronic, magnetic, absorption, and emission properties were examined in detail, and experimental results were interpreted using DFT calculations. Oxidation potentials, absorption and emission energies could be tuned depending on the electron density of the bridges. The triphenylamine bridges mediated intramolecular weak antiferromagnetic interactions between the radical spins, and the energy difference between the high spin and low spin states was determined by temperature dependent ESR spectroscopy and DFT calculations. The fluorescent properties of all radicals were examined in detail and revealed no difference for high and low spin states which facilitates application of these dyes in two-photon absorption spectroscopy and OLED devices.},
  language  = {en}
}
@article{HarkinBrochSchrecketal.2016,
  author    = {Harkin, David J. and Broch, Katharina and Schreck, Maximilian and Ceyman, Harald and Stoy, Andreas and Yong, Chaw-Keong and Nikolka, Mark and McCulloch, Ian and Stingelin, Natalie and Lambert, Christoph and Sirringhaus, Henning},
  title     = {Decoupling charge transport and electroluminescence in a high mobility polymer semiconductor},
  series = {Advanced Materials},
  volume    = {28},
  journal   = {Advanced Materials},
  number    = {30},
  doi       = {10.1002/adma.201600851},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-187670},
  pages     = {6378-6285},
  year      = {2016},
  abstract  = {Fluorescence enhancement of a high-mobility polymer semiconductor is achieved via energy transfer to a higher fluorescence quantum yield squaraine dye molecule on 50 ps timescales. In organic light-emitting diodes, an order of magnitude enhancement of the external quantum efficiency is observed without reduction in the charge-carrier mobility resulting in radiances of up to 5 W str\(^{-1}\) m\(^{-2}\) at 800 nm.},
  language  = {en}
}
@article{GoetzKunzFinketal.2020,
  author    = {G{\"o}tz, Ralph and Kunz, Tobias C. and Fink, Julian and Solger, Franziska and Schlegel, Jan and Seibel, J{\"u}rgen and Kozjak-Pavlovic, Vera and Rudel, Thomas and Sauer, Markus},
  title     = {Nanoscale imaging of bacterial infections by sphingolipid expansion microscopy},
  series = {Nature Communications},
  volume    = {11},
  journal   = {Nature Communications},
  doi       = {10.1038/s41467-020-19897-1},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-231248},
  year      = {2020},
  abstract  = {Expansion microscopy (ExM) enables super-resolution imaging of proteins and nucleic acids on conventional microscopes. However, imaging of details of the organization of lipid bilayers by light microscopy remains challenging. We introduce an unnatural short-chain azide- and amino-modified sphingolipid ceramide, which upon incorporation into membranes can be labeled by click chemistry and linked into hydrogels, followed by 4x to 10x expansion. Confocal and structured illumination microscopy (SIM) enable imaging of sphingolipids and their interactions with proteins in the plasma membrane and membrane of intracellular organelles with a spatial resolution of 10-20nm. As our functionalized sphingolipids accumulate efficiently in pathogens, we use sphingolipid ExM to investigate bacterial infections of human HeLa229 cells by Neisseria gonorrhoeae, Chlamydia trachomatis and Simkania negevensis with a resolution so far only provided by electron microscopy. In particular, sphingolipid ExM allows us to visualize the inner and outer membrane of intracellular bacteria and determine their distance to 27.6 +/- 7.7nm. Imaging of lipid bilayers using light microscopy is challenging. Here the authors label cells using a short chain click-compatible ceramide to visualize mammalian and bacterial membranes with expansion microscopy.},
  language  = {en}
}
@article{GoerlZhangStepanenkoetal.2015,
  author    = {G{\"o}rl, Daniel and Zhang, Xin and Stepanenko, Vladimir and W{\"u}rthner, Frank},
  title     = {Supramolecular block copolymers by kinetically controlled co-self-assembly of planar and core-twisted perylene bisimides},
  series = {Nature Communications},
  volume    = {6},
  journal   = {Nature Communications},
  number    = {7009},
  doi       = {10.1038/ncomms8009},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-148657},
  year      = {2015},
  abstract  = {New synthetic methodologies for the formation of block copolymers have revolutionized polymer science within the last two decades. However, the formation of supramolecular block copolymers composed of alternating sequences of larger block segments has not been realized yet. Here we show by transmission electron microscopy (TEM), 2D NMR and optical spectroscopy that two different perylene bisimide dyes bearing either a flat (A) or a twisted (B) core self-assemble in water into supramolecular block copolymers with an alternating sequence of (A\(_{m}\)BB)\(_{n}\). The highly defined ultralong nanowire structure of these supramolecular copolymers is entirely different from those formed upon self-assembly of the individual counterparts, that is, stiff nanorods (A) and irregular nanoworms (B), respectively. Our studies further reveal that the as-formed supramolecular block copolymer constitutes a kinetic self-assembly product that transforms into thermodynamically more stable self-sorted homopolymers upon heating.},
  language  = {en}
}
@article{GoerlSoberatsHerbstetal.2016,
  author    = {G{\"o}rl, Daniel and Soberats, Bartolome and Herbst, Stefanie and Stepanenko, Vladimir and W{\"u}rthner, Frank},
  title     = {Perylene bisimide hydrogels and lyotropic liquid crystals with temperature-responsive color change},
  series = {Chemical Science},
  volume    = {7},
  journal   = {Chemical Science},
  number    = {11},
  doi       = {10.1039/c6sc02249a},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-162459},
  pages     = {6786-6790},
  year      = {2016},
  abstract  = {The self-assembly of perylene bisimide (PBI) dyes bearing oligo ethylene glycol (OEG) units in water affords responsive functional nanostructures characterized by their lower critical solution temperature (LCST). Tuning of the LCST is realized by a supramolecular approach that relies on two structurally closely related PBI-OEG molecules. The two PBIs socially co-assemble in water and the resulting nanostructures exhibit a single LCST in between the transition temperatures of the aggregates formed by single components. This permits to precisely tune the transition from a hydrogel to a lyotropic liquid crystal state at temperatures between 26 and 51 °C by adjusting the molar fraction of the two PBIs. Owing to concomitant changes in PBI-PBI interactions this phase transition affords a pronounced color change with "fluorescence-on" response that can be utilized as a smart temperature sensory system.},
  language  = {en}
}
@phdthesis{Gsaenger2013,
  author    = {Gs{\"a}nger, Marcel},
  title     = {Organic Thin-Film Transistors Based on Dipolar Squaraine Dyes},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-80588},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2013},
  abstract  = {In summary, it can be stated that the herein studied set of acceptor-substituted squaraine dyes can be seen as potent candidates for OTFTs. Furthermore, their transistor performance can be easily tuned to obtain hole mobilities up to 0.45 cm2/Vs from solution and 1.3 cm2/Vs from sublimation by choosing adequate deposition techniques. In the end, a probable structural model derived from studies of the thin-film morphology by methods such as optical spectroscopy, AFM and X-ray even facilitated the clarification of the observed charge transport behavior.},
  subject      = {Organische Chemie},
  language  = {en}
}
@phdthesis{Gruene2022,
  author    = {Gr{\"u}ne, Marvin},
  title     = {Solid-state NMR Spectroscopic, X-Ray Diffraction and Quantum Chemical Investigations of the Crystalline Cancer Drug Paclitaxel and Paclitaxel incorporated into Polymer Micelles},
  doi       = {10.25972/OPUS-23719},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-237199},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2022},
  abstract  = {Paclitaxel (PTX) is one of the leading drugs against breast and ovarian cancer. Due to its low solubility, treatment of the patients with this drug requires a very well-suited combination with a soluble pharmaceutical excipient to increase the bioavailability and reduce the strong side ef-fects. One efficient way to achieve this in the future could be the incorporation of PTX into pol-ymeric micelles composed of poly(2-oxazoline) based triblock copolymers (POL) which ena-bles PTX loadings of up to 50 wt.\%. However, structural information at an atomic level and thus the knowledge of interaction sites within these promising but complex PTX-POL formula-tions were not yet available. Such results could support the future development of improved excipients for PTX and suitable excipients for other pharmaceutical drugs. Therefore, a solid-state MAS NMR investigation of these amorphous formulations with different POL-PTX com-positions was performed in this thesis as this gives insights of the local structure at an atomic level in its solid state. NMR in solution showed very broad 13C signals of PTX for this system due to the reduced mobility of the incorporated drug which exclude this as an analytical meth-od. In a first study, crystalline PTX was structurally characterized by solid-state NMR as no com-plete 13C spectrum assignment and no 1H NMR data existed for the solid state. In addition, the asymmetric unit of the PTX crystal structure consists of two molecules (Z'=2) that can only be investigated in its solid state. As crystalline PTX in total has about 100 different 13C and 1H chemical shifts with very small differences due to Z'=2, and furthermore, its unit cell consisting of more than 900 atoms, accompanying GIPAW (CASTEP) calculations were required for NMR signal assignments. These calculations were performed using the first three available purely hydrous and anhydrous PTX structures, which were determined by XRD and published by Vel-la-Zarb et al. in 2013. Within this thesis, is was discovered that two investigated batches of commercially available PTX from the same supplier both contained an identical and so far un-known PTX phase that was elucidated by PXRD as well as solid-state NMR data. One of the two batches consists of an additional phase that was shown to be very similar to a known hy-drated phase published in 2013.[1] By heating the batch with the mixture of the two phases un-der vacuum, it is transformed completely to the new dry phase occurring in both PTX batches. Since the drying conditions to obtain anhydrous PTX in-situ on the PXRD setup described by Vella-Zarb et. al.[1] were much softer than ours, we identify our dry phase as a relaxed version of their published anhydrate structure. The PXRD data of the new anhydrate phase was trans-ferred into a new structural model, which currently undergoes geometry optimization. Based on solid-state NMR data at MAS spinning frequencies up to 100 kHz, a 13C and a partial 1H signal assignment for the new anhydrous structure were achieved. These results provided sufficient structural information for further investigations of the micellar POL-PTX system. In a second study, the applicability and benefit of two-dimensional solid-state 14N-1H HMQC MAS NMR spectra for the characterization of amorphous POL-PTX formulations was investi-gated. The mentioned technique has never been applied to a system of similar complexity be-fore and was chosen because around 84\% of the small-molecule drugs contain at least one nitrogen atom. In addition, the number of nitrogen atoms in both POL and PTX is much smaller than the number of carbons or hydrogens, which significantly reduces the spectral complexity. 14N has a natural abundance of 99.6\% but leads to quadrupolar broadening due to its nuclear spin quantum number I = 1. While this is usually undesirable due to broadening in the resulting 1D 14N NMR spectra, this effect is explicitly used in the 2D 14N-1H HMQC MAS experiment. The indirect 14N measurement can avoid the broadening while maintaining the advantage of the high natural abundance and making use of the much more dispersed signals due to the additional quadrupolar shifts as compared to 15N. This measurement method could be successfully applied to the complex amorphous POL-PTX mixtures. With increasing PTX loading of the formulations, additional peaks arise as spatial proximities of the amide nitrogens of POL to NH or OH groups of PTX. In addition, the 14N quadrupolar shift of these amide nitrogens decreases with increasing PTX content indicating a more symmetric nitrogen environment. The latter can be explained by a transformation of the trigonal planar coordination of the tertiary amide nitrogen atoms in pure POL towards a more tetrahedral environment upon PTX loading induced by the formation of hydrogen bonds with NH/OH groups of PTX. In the third and last project, the results of the two abovementioned studies were used and ex-tended by solid state 13C and two-dimensional 1H-13C as well as 1H-1H MAS NMR data with the aim to derive a structural model of the POL-PTX formulations at an atomic level. The knowledge of the NMR signal assignments for crystalline PTX was transferred to amorphous PTX (present in the micelles of the formulations). The 13C solid-state NMR signals were evalu-ated concerning changes in chemical shifts and full widths of half maximum (FWHM) for the different PTX loadings. In this way, the required information about possible interaction sites at an atomic level becomes available. Due to the complexity of these systems, such proximities often cannot be assigned to special atoms, but more to groups of atoms, as the individual de-velopments of line widths and line shifts are mutually dependent. An advantageous aspect for this analysis was that pure POL already forms unloaded micelles. The evaluation of the data showed that the terminal phenyl groups of PTX seem to be most involved in the interaction by the establishment of the micelle for lowest drug loading and that they are likely to react to the change in the amount of PTX molecules as well. For the incorporation of PTX in the micelles, the following model could be obtained: For lowest drug loading, PTX is mainly located in the inner part of the micelles. Upon further increasing of the loading, it progressively extends to-ward the micellar shell. This could be well shown by the increasing interactions of the hydro-phobic butyl chain of POL and PTX, proceeding in the direction of the polymer backbone with rising drug load. Furthermore, due to the size of PTX and the hydrodynamic radius of the mi-celles, even at the lowest loading, the PTX molecules partially reach the core-shell interface of the micelle. Upon increasing the drug loading, the surface coverage with PTX clusters increas-es based on the obtained model approach. The latter result is supported by DLS and SANS data of this system. The abovementioned results of the 14N-1H HMQC MAS investigation of the POL-PTX formulations support the outlined model. As an outlook, the currently running geometry optimization and subsequently scheduled calcu-lation of the chemical shieldings of the newly obtained anhydrous PTX crystal structure can further improve the solid-state NMR characterization through determination of further spatial proximities among protons using the existing 2D 1H(DQ)-1H(SQ) solid-state MAS NMR spec-trum at 100 kHz rotor spinning frequency. The 2D 14N-1H HMQC MAS NMR experiments were shown to have great potential as a technique for the analysis of other disordered and amor-phous drug delivery systems as well. The results of this thesis should be subsequently applied to other micellar systems with varying pharmaceutical excipients or active ingredients with the goal of systematically achieving higher drug loadings (e.g., for the investigated PTX, the similar drug docetaxel or even different natural products). Additionally, it is planned to transfer the knowledge to another complex polymer system containing poly(amino acids) which offers hy-drogen bonding donor sites for additional intermolecular interactions. Currently, the POL-PTX system is investigated by further SANS studies that may provide another puzzle piece to the model as complementary measurement method in the future. In addition, the use of MD simu-lations might be considered in the future. This would allow a computerized linking of the differ-ent pieces of information with the aim to determine the most likely model.},
  subject      = {Wirkstoff-Tr{\"a}ger-System},
  language  = {en}
}
@article{GryszelSchlossarekWuerthneretal.2023,
  author    = {Gryszel, Maciej and Schlossarek, Tim and W{\"u}rthner, Frank and Natali, Mirco and Głowacki, Eric Daniel},
  title     = {Water-soluble cationic perylene diimide dyes as stable photocatalysts for H\(_2\)O\(_2\) evolution},
  series = {ChemPhotoChem},
  volume    = {7},
  journal   = {ChemPhotoChem},
  number    = {9},
  issn      = {2367-0932},
  doi       = {10.1002/cptc.202300070},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-370250},
  year      = {2023},
  abstract  = {Photocatalytic generation of hydrogen peroxide, H\(_2\)O\(_2\), has gained increasing attention in recent years, with applications ranging from solar energy conversion to biophysical research. While semiconducting solid-state materials are normally regarded as the workhorse for photogeneration of H\(_2\)O\(_2\), an intriguing alternative for on-demand H\(_2\)O\(_2\) is the use of photocatalytic organic dyes. Herein we report the use of water-soluble dyes based on perylene diimide molecules which behave as true molecular catalysts for the light-induced conversion of dissolved oxygen to hydrogen peroxide. In particular, we address how to obtain visible-light photocatalysts which are stable with respect to aggregation and photochemical degradation. We report on the factors affecting efficiency and stability, including variable electron donors, oxygen partial pressure, pH, and molecular catalyst structure. The result is a perylene diimide derivative with unprecedented peroxide evolution performance using a broad range of organic donor molecules and operating in a wide pH range.},
  language  = {en}
}
@article{GriesbeckMichailRauchetal.2019,
  author    = {Griesbeck, Stefanie and Michail, Evripidis and Rauch, Florian and Ogasawara, Hiroaki and Wang, Chenguang and Sato, Yoshikatsu and Edkins, Robert M. and Zhang, Zuolun and Taki, Masayasu and Lambert, Christoph and Yamaguchi, Shigehiro and Marder, Todd B.},
  title     = {The Effect of Branching on the One- and Two-Photon Absorption, Cell Viability, and Localization of Cationic Triarylborane Chromophores with Dipolar versus Octupolar Charge Distributions for Cellular Imaging},
  series = {Chemistry - A European Journal},
  volume    = {25},
  journal   = {Chemistry - A European Journal},
  number    = {57},
  doi       = {10.1002/chem.201902461},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-212887},
  pages     = {13164 -- 13175},
  year      = {2019},
  abstract  = {Two different chromophores, namely a dipolar and an octupolar system, were prepared and their linear and nonlinear optical properties as well as their bioimaging capabilities were compared. Both contain triphenylamine as the donor and a triarylborane as the acceptor, the latter modified with cationic trimethylammonio groups to provide solubility in aqueous media. The octupolar system exhibits a much higher two-photon brightness, and also better cell viability and enhanced selectivity for lysosomes compared with the dipolar chromophore. Furthermore, both dyes were applied in two-photon excited fluorescence (TPEF) live-cell imaging.},
  language  = {en}
}
@article{GriesbeckMichailRauchetal.2019,
  author    = {Griesbeck, Stefanie and Michail, Evripidis and Rauch, Florian and Ogasawara, Hiroaki and Wang, Chenguang and Sato, Yoshikatsu and Edkins, Robert M. and Zhang, Zuolun and Taki, Masayasu and Lambert, Christoph and Yamaguchi, Shigehiro and Marder, Todd B.},
  title     = {The Effect of Branching on One- and Two-Photon Absorption, Cell Viability and Localization of Cationic Triarylborane Chromophores with Dipolar versus Octupolar Charge Distributions for Cellular Imaging},
  series = {Chemistry - A European Journal},
  volume    = {25},
  journal   = {Chemistry - A European Journal},
  number    = {57},
  doi       = {10.1002/chem.201902461},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-204829},
  pages     = {13164-13175},
  year      = {2019},
  abstract  = {Two different chromophores, namely a dipolar and an octupolar system, were prepared and their linear and nonlinear optical properties as well as their bioimaging capabilities were compared. Both contain triphenylamine as the donor and a triarylborane as the acceptor, the latter modified with cationic trimethylammonio groups to provide solubility in aqueous media. The octupolar system exhibits a much higher two-photon brightness, and also better cell viability and enhanced selectivity for lysosomes compared with the dipolar chromophore. Furthermore, both dyes were applied in two-photon excited fluorescence (TPEF) live-cell imaging.},
  language  = {en}
}
@article{GrandeSoberatsHerbstetal.2018,
  author    = {Grande, Vincenzo and Soberats, Bartolome and Herbst, Stefanie and Stepanenko, Vladimir and W{\"u}rthner, Frank},
  title     = {Hydrogen-bonded perylene bisimide J-aggregate aqua material},
  volume    = {9},
  issn      = {2041-6539},
  doi       = {10.1039/C8SC02409J},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-204715},
  pages     = {6904-6911},
  year      = {2018},
  abstract  = {A new twelvefold methoxy-triethyleneglycol-jacketed tetraphenoxy-perylene bisimide (MEG-PBI) amphiphile was synthesized that self-assembles into two types of supramolecular aggregates in water: red-coloured aggregates of low order and with weak exciton coupling among the PBIs and blue-coloured strongly coupled J-aggregates consisting of a highly ordered hydrogen-bonded triple helix of PBIs. At room temperature this PBI is miscible with water at any proportions which enables the development of robust dye aggregates in solution, in hydrogel states and in lyotropic liquid crystalline states. In the presence of 60-95 wt\% water, self-standing coloured hydrogels exhibit colour changes from red to blue accompanied by a fluorescence light-up in the far-red region upon heating in the range of 30-50 °C. This phenomenon is triggered by an entropically driven temperature-induced hydrogen-bond-directed slipped stacking arrangement of the MEG-PBI chromophores within structurally well-defined J-aggregates. This versatile aqua material is the first example of a stable PBI J-aggregate in water. We anticipate that this study will open a new avenue for the development of biocompatible functional materials based on self-assembled dyes and inspire the construction of other hydrogen-bonded supramolecular materials in the highly competitive solvent water.},
  language  = {en}
}
@article{GoleStepanenkoRageretal.2018,
  author    = {Gole, Bappaditya and Stepanenko, Vladimir and Rager, Sabrina and Gr{\"u}ne, Matthias and Medina, Dana D. and Bein, Thomas and W{\"u}rthner, Frank and Beuerle, Florian},
  title     = {Microtubular Self-Assembly of Covalent Organic Frameworks},
  series = {Angewandte Chemie International Edition},
  volume    = {57},
  journal   = {Angewandte Chemie International Edition},
  doi       = {10.1002/anie.201708526},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-227373},
  pages     = {846-850},
  year      = {2018},
  abstract  = {Despite significant progress in the synthesis of covalent organic frameworks (COFs), reports on the precise construction of template-free nano- and microstructures of such materials have been rare. In the quest for dye-containing porous materials, a novel conjugated framework DPP-TAPP-COF with an enhanced absorption capability up to λ=800 nm has been synthesized by utilizing reversible imine condensations between 5,10,15,20-tetrakis(4-aminophenyl)porphyrin (TAPP) and a diketopyrrolopyrrole (DPP) dialdehyde derivative. Surprisingly, the obtained COF exhibited spontaneous aggregation into hollow microtubular assemblies with outer and inner tube diameters of around 300 and 90 nm, respectively. A detailed mechanistic investigation revealed the time-dependent transformation of initial sheet-like agglomerates into the tubular microstructures.},
  language  = {en}
}
@article{GleiterBischofGubernatoretal.1985,
  author    = {Gleiter, Rolf and Bischof, Peter and Gubernator, Klaus and Christl, Manfred and Schwager, Luis and Vogel, Pierre},
  title     = {2,3-Bis(methylene)bicyclo[2.1.1]hexane and 3,4-Bis(methylene)tricyclo[3.1.0.0\(^{2,6}\)]hexane : Interaction between a π System and a Cyclobutane or Bicyclobutane Moiety},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-31845},
  year      = {1985},
  abstract  = {The He (I) photoelectron spectra of 2-bicyclo[2.1.l]hexene (1), 2,3-bis(methylene)bicyclo[2.1.l]hexane (3), and 3,4-bis(methylene)tricyclo[3.l.O.0\(^{2.6}\)]hexane (4) have been investigated. The assignment given is based on a ZDO model and semiempirical calculations. Tagether with the PE data of benzvalene (2), the reported data allow a comparison between 1-2 and 3-4. This yields a measure of the interactions between 8 cyclobutane or 8 bicyclobutane moiety and a double bond system within a ZDO model. The resonance integral found in the case of 1 and 3 amounts to -1.9 eV, that for 2 and 4, to -2.3 eV. The investigations furthermore reveal that the electronic factors which contribute to the higher reactivity of the bicyclobutane compounds amount to 5 kcal/mol.},
  subject      = {Chemie},
  language  = {en}
}
@article{GleiterBischofChristl1986,
  author    = {Gleiter, Rolf and Bischof, Peter and Christl, Manfred},
  title     = {Electronic Structure of Octavalene : Photoelectron Spectroscopic Investigations},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-31588},
  year      = {1986},
  abstract  = {The He I photoelectron (PE) spectra of octavalene (5) as weil as its hydrogenated products 6-8 have been investigated. The assignment given is based on an empirical comparison of 5-8 with related compounds, a ZDO model, and semiempirical and ab initio calculations. Within the ZDO model the interaction between the buta.diene moiety and the bicyclobutane fragment of 5 is described by a resonance integral of -2.3 eV. The orbitalsequence of 5 is found tobe 2a\(_2\) (\(\pi\)-\(\sigma\)), 9a\(_1\) (\(\sigma\)), 3b1 (\(\pi\) - \(\sigma\)), 1a\(_2\) (\(\sigma\) + \(\pi\)), 2b\(_1\) (\(\sigma\) + \(\pi\)).},
  subject      = {Chemie},
  language  = {en}
}
@article{GittinsHarrisFieldetal.1993,
  author    = {Gittins, C. M. and Harris, N. A. and Field, R. W. and Verges, J. and Ernst, W. E. and B{\"u}ndgen, P. and Engels, Bernd},
  title     = {Analysis and Depertubation of the C\(^2\)Π and D\(^2\)Σ\(^+\) states of CaF},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-58980},
  year      = {1993},
  abstract  = {No abstract available},
  subject      = {Organische Chemie},
  language  = {en}
}
@article{GilSepulcreLindnerSchindleretal.2021,
  author    = {Gil-Sepulcre, Marcos and Lindner, Joachim O. and Schindler, Dorothee and Velasco, Luc{\´i}a and Moonshiram, Dooshaye and R{\"u}diger, Olaf and DeBeer, Serena and Stepanenko, Vladimir and Solano, Eduardo and W{\"u}rthner, Frank and Llobet, Antoni},
  title     = {Surface-promoted evolution of Ru-bda coordination oligomers boosts the efficiency of water oxidation molecular anodes},
  series = {Journal of the American Chemical Society},
  volume    = {143},
  journal   = {Journal of the American Chemical Society},
  number    = {30},
  doi       = {10.1021/jacs.1c04738},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-351514},
  pages     = {11651-11661},
  year      = {2021},
  abstract  = {A new Ru oligomer of formula {[Ru-\(^{II}\)(bda-\(\kappa\)-N\(^2\)O\(^2\))(4,4'-bpy)]\(_{10}\)(4,4'-bpy)}, 10 (bda is [2,2'-bipyridine]-6,6'-dicarbox-ylate and 4,4'-bpy is 4,4'-bipyridine), was synthesized and thoroughly characterized with spectroscopic, X-ray, and electrochemical techniques. This oligomer exhibits strong affinity for graphitic materials through CH-\(\pi\) interactions and thus easily anchors on multiwalled carbon nanotubes (CNT), generating the molecular hybrid material 10@CNT. The latter acts as a water oxidation catalyst and converts to a new species, 10'(H\(_2\)O)\(_2\)@CNT, during the electrochemical oxygen evolution process involving solvation and ligand reorganization facilitated by the interactions of molecular Ru catalyst and the surface. This heterogeneous system has been shown to be a powerful and robust molecular hybrid anode for electrocatalytic water oxidation into molecular oxygen, achieving current densities in the range of 200 mA/cm\(^2\) at pH 7 under an applied potential of 1.45 V vs NHE. The remarkable long-term stability of this hybrid material during turnover is rationalized based on the supramolecular interaction of the catalyst with the graphitic surface.},
  language  = {en}
}
@article{GigstadRicciJRMarkgrafetal.1991,
  author    = {Gigstad, Kenneth M. and Ricci JR., John S. and Markgraf, J. Hodge and Christl, Manfred and Kraft, Arno},
  title     = {Strained Heterocyclic Systems : 18. Structure of 1,2,3-Methylidyne-2,3-dihydro-1H-cyclopenta[b]quinoxaline},
  isbn      = {0108-2701},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-41645},
  year      = {1991},
  abstract  = {No abstract available},
  language  = {en}
}
@article{GershbergFennelRehmetal.2016,
  author    = {Gershberg, Jana and Fennel, Franziska and Rehm, Thomas H. and Lochbrunner, Stefan and W{\"u}rthner, Frank},
  title     = {Anti-cooperative supramolecular polymerization: a new K\(_2\)-K model applied to the self-assembly of perylene bisimide dye proceeding via well-defined hydrogen-bonded dimers},
  series = {Chemical Science},
  volume    = {7},
  journal   = {Chemical Science},
  number    = {3},
  doi       = {10.1039/c5sc03759j},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-191428},
  pages     = {1729-1737},
  year      = {2016},
  abstract  = {A perylene bisimide dye bearing amide functionalities at the imide positions derived from amino acid L-alanine and a dialkoxy-substituted benzyl amine self-assembles into tightly bound dimers by π-π-stacking and hydrogen bonding in chloroform. In less polar or unpolar solvents like toluene and methylcyclohexane, and in their mixtures, these dimers further self-assemble into extended oligomeric aggregates in an anti-cooperative process in which even numbered aggregates are highly favoured. The stepwise transition from dimers into oligomers can not be properly described by conventional K\(_2\)-K model, and thus a new K\(_2\)-K aggregation model has been developed, which interpretes the present anti-cooperative supramolecular polymerization more appropriately. The newly developed K\(_2\)-K model will be useful to describe self-assembly processes of a plethora of other π-conjugated molecules that are characterized by a favored dimer species.},
  language  = {en}
}
@phdthesis{Gershberg2016,
  author    = {Gershberg, Jana},
  title     = {Self-assembled Perylene Bisimide Dimers and their Interaction with Double-stranded DNA},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-136725},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2016},
  abstract  = {The self-assembly of molecules based on π-π-interactions and hydrogen bonding is of significant importance in nature. These processes enable the formation of complex supramolecular structures with diverse functions. For the transfer of the concepts from nature to artificial supramolecular structures, a basic understanding of those processes is needed. For this purpose, π-conjugated aromatic molecules with an easy synthetic access are suitable as their functionalities can be changed effortless. Perylene bisimide (PBIs) dyes are attractive candidates since they fulfill these requirements owing to their tendency to self-assemble in solution due to their large aromatic π-surfaces. Furthermore, the changes of the optical properties (for instance absorption, emission or circular dichroism) of PBI dyes, caused by their self-assembly, are easy to study experimentally. Structural variations of PBI dyes including additional non-covalent interactions, such as hydro-gen bonding, enable to direct their self-assembly process. Thus, the formation of interesting su-pramolecular structures of PBI dyes could be realized, although, often of undefined size. The aim of this thesis was to develop strategies to restrict the aggregate size of PBI dyes. Therefore, de-fined structural features of PBI molecules were combined and a variation of external influences such as solvent and concentration included. Furthermore, DNA was utilized as a template for the limitation of the aggregate size of PBI dyes. Chapters 1 and 2 provide general information and describe examples from literature which are necessary to understand the following experimental work. The first chapter is based on the inter-actions of various molecules with DNA. Therefore, DNA is considered as a supramolecular biom-acromolecule containing specific structural and functional features to interact with small mole-cules. Afterwards, the main interaction modes of small molecules with DNA such as electrostatic interaction, intercalation and groove binding with corresponding examples are discussed. Among all techniques applied to study the interaction of ligands with DNA, UV/Vis absorption, fluores-cence and circular dichroism spectroscopy were described in detail. At the end of this chapter, examples of already pre-associated systems showing interactions with DNA are presented. The second chapter is focused on the determination and mathematic evaluation of the self-assembly processes. The simplest models such as monomer-dimer and isodesmic model are de-scribed and supplemented by examples. Furthermore, the simplest modification of the isodesmic model, the K2-K model, is presented. Additionally, experimental problems, which may arise dur-ing the investigations of the self-assembly processes, are addressed. For the description of the entire self-assembly process, a sufficiently large concentration range and an appropriate measure-ment method that is sensitive in this concentration range is necessary. Furthermore, the full transi-tion from the monomeric to the aggregated species has to be spectroscopically ascertainable. This enables an accurate mathematic evaluation of the self-assembly process and provides meaningful binding constants. The self-assembly pathway can be controlled by the variation of solvent, con-centration or temperature. However, this pathway can also be directed by a rational design of the molecular structure of the considered system. For example, a specific interplay of π-π-interactions and hydrogen bonding may promote isodesmic as well as cooperative growth into large struc-tures. The main focus of this thesis is to develop strategies to control the aggregate size of PBI dyes (Chapter 3). For this purpose, a PBI scaffold was designed which contains hydrogen bonding amide functions at the imide positions derived from the amino acid L-alanine and solubilizing side groups in the periphery (Figure 81). The variations of the residues R/R' range from didodecylox-yphenyl, didodecylphenyl, dioligo(ethylene glycol)phenyl to branched and linear alkyl chains. The most extensive study of the aggregation behavior was performed for the PBI dye 5. Concen-tration-dependent 1H NMR and UV/Vis absorption measurements clearly revealed the formation of dimers in chloroform. Further investigations by means of 2D NMR, VPO and ITC confirmed the exclusive presence of dimer aggregates of PBI 5 in the investigated concentration range. Mo-lecular modelling studies, supported by NMR and FT-IR experiments, provided structural reasons for the absence of further growth into larger aggregates. The specific combination of π-π interac-tions and hydrogen bonds between the NH groups of the amide groups and the carbonyl oxygen atoms of the PBI core are decisive for the formation of the discrete dimer stack (see Figure 82). The investigations of the aggregation behavior of PBIs 6-9 were less extensive but consistent with the results obtained for PBI 5. However, the determined binding constants vary over a considera-ble range of 1.1 x 102 M-1 (PBI 8) to 1.4 x 104 M-1 (PBI 5). These differences could be attributed to structural variations of the dyes. The electron-rich phenyl substituent promoted the aggregation tendency of PBIs 5-7 compared with 8 and 9 that carry only alkyl side chains. Thus, the π-π in-teractions of bay-unsubstituted PBI cores in combination with hydrogen bonding of the amide functions control the formation of discrete dimers of these PBI dyes. The variation of conditions, such as solvent, change the aggregation behavior of PBI dyes. In the solvents toluene and/or methylcyclohexane, anti-cooperative growth into larger aggregates of PBI 5 was observed (Chapter 4). The important feature of this self-assembly process is the absence of isosbestic points over the whole concentration range in the UV/Vis absorption measurements. The preference for the dimeric species of PBI 5 remained in both solvents as well as in mixtures of them, but upon increasing the concentration these dimers self-assemble into larger aggregates. An important feature of the self-assembly process is the preferred formation of even-numbered aggregates compared to the odd-numbered ones (see Figure 83). Although, the conventional K2-K model provides plausible binding constants, it is not capable to describe the aggregation behavior adequately, since it considers a continuous size distribution. The gradual aggregation process over dimers, tetramers, hexamers, etc. was therefore analyzed with a newly developed K2-K model for anti-cooperative supramolecular polymerization. By the global analysis of the UV/Vis absorption spectra a very good agreement between the experimental and simulated spectra, which were based on the new K2-K model, was obtained. Furthermore, the calculated UV/Vis absorption spectra of a dimer and an aggregate highlighted the most important structural differences. The absorption spectrum of the dimer still has a pronounced vibronic structure which gets lost in the spectrum of the aggregate. In another part of this work, a series of water soluble PBI dyes were described which contain similar PBI scaffolds as PBIs 5-8 (Chapter 5). These PBI dyes self-assemble into similar dimer aggregates in water due to their positively charged side chains causing electrostatic repulsion be-tween the molecules (see Figure 84). Here, however, the self-assembly behavior has not been studied thoroughly in water due to the similarities of already reported PBI dyes. Instead, the focus here is on the characterization of the interactions of these dyes with DNA/RNA. The comprehensive studies using thermal denaturation experiments showed the high stability of these PBI/polynucleotide complexes. The spermine-functionalized PBI dyes having six positive charges showed strong interactions with DNA/RNA which was expressed in a signif-icant increase of the melting temperatures of DNA/RNA (ΔTm values between 7 and > 35 ° C). The dioxa analogues containing only two positive charges had lower enhancement of the melting temperature of DNA/RNA (ΔTm values between 3 and 30 ° C). A similar trend has been observed in the fluorimetric titrations. The spermine-functionalized PBI dyes showed high binding con-stants (log Ks = 9.2 - 9.8), independently of the used polynucleotides. In contrast, the dioxa ana-logues displayed smaller binding constants (log Ks = 6.5 - 7.9) without any correlation between binding affinity and binding strength of the PBI dyes and the applied polynucleotides. The CD-spectroscopic measurements revealed significant differences in the binding properties of the dyes with DNA/RNA. They were dependent on the steric hindrance of the amino acid residues at the imide position and their configuration on one side and the grooves properties of ds-DNA/RNA on the other side. The spectroscopic results confirmed the formation of excitonically coupled PBI dimers in the minor groove of ds-DNA and the major groove of ds-RNA. Depending on the se-quence, the grooves of the polynucleotides provide different amount of space for embedding molecules. The guanine amino groups protrude into the minor groove of the polynucleotide poly(dG-dC)2 increasing the steric hindrance, which is not the case for poly(dA-dT)2. Molecular modeling studies showed that the PBI dimers penetrate deeper into the groove of poly(dA-dT)2 due to the absence of the steric hindrance, in comparison to the groove of poly(dG-dC)2 (see Figure 85).},
  subject      = {Perylentetracarbons{\"a}urederivate},
  language  = {en}
}
@phdthesis{Geiss2009,
  author    = {Geiß, Barbara},
  title     = {Donor-Acceptor Substituted Triplet Emitters},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-39721},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2009},
  abstract  = {Im ersten Teil dieser Arbeit wurden die Synthesen und photophysikalischen Eigenschaften mehrerer Donor-Akzeptor-substituierter {\"U}bergangsmetallkomplexe des Typs [(C^N)2Ir(N^N)][PF6] vorgestellt. Das Ir(III) wurde mit Lochleitern wie Carbazol (CZ) und Triarylamin (TAA), die {\"u}ber eine Methyl- und Ethylbr{\"u}cke mit dem cyclometallierten C^N-Liganden Phenylpyrazol (ppz) und Phenylpyridin (ppy) verbunden waren, verkn{\"u}pft. Zweiz{\"a}hnige neutrale N^N- und P^P-Liganden wie 2,2'-Bipyridyl (bpy), 3,4,7,8-Tetramethyl-1,10-phenanthrolin (tmp) und cis-1,2-Bis(diphenylphosphino)ethylen (bdppe) wurden als Akzeptoren ausgew{\"a}hlt.Um die Eigenschaften in Vergleich setzen zu k{\"o}nnen, wurden die entsprechenden Referenzverbindungen ohne Lochleiter hergestellt. Alle Carbazol-Komplexe, bis auf die bdppe-Verbindungen, zeigen Emission und transiente Absorption {\"a}hnlich denen ihrer Referenzverbindungen, was sie f{\"u}r Anwendungen in der OLED-Forschung interessant macht. Untersuchungen an LECs (lichtemittierende elektrochemische Zellen) zeigen eine rotverschobene Lumineszenz. Die Triarylamin-Komplexe zeigen keine Emission bei RT, allerdings weisen diese eine intensive, blauverschobene und langlebige Lumineszenz bei 77 K in einer festen Matrix auf. Die transienten Absorptionsspektren unterscheiden sich stark von denen der Referenzverbindungen. Sie weisen charakteristische Merkmale von den Spektren der isolierten Radikalanionen und Radikalkationen auf, was durch spektroelektrochemische Messungen bewiesen wurde. Daraus kann geschlossen werden, dass es sich bei dem angeregten Zustand um einen ladungsgetrennten (CS) Zustand handelt, wo die positive Ladung am Triarylamin-Donor und die negative Ladung am N^N-Akzeptor sitzt. Die Abklingzeiten der angeregten Zust{\"a}nde verlaufen biexponentiell, was ein Hinweis auf das Vorhandensein zweier angeregter Zust{\"a}nde, dem 1CS und 3CS Zustand, ist. Um dieses Verhalten zu untersuchen, wurden verschieden substituierte bpy-Komplexe synthetisiert und analysiert. Temperaturabh{\"a}ngige Messungen der transienten Absorption zeigten, dass alle Ratenkonstanten temperaturunabh{\"a}ngig sind, mit Ausnahme des OMe-substituierten Komplexes. Die Gleichgewichtskonstante K = k1 / k2 ist nahezu eins f{\"u}r alle Komplexe. Bei dem OMe-Komplex sinkt sie mit steigender Temperatur. Eine Auftragung der Ratenkonstanten gegen die Energiedifferenzen, die durch cyclovoltammetrische Messungen erhalten wurden, zeigte, dass alle Konstanten mit steigender Donorst{\"a}rke am bpy-Liganden abfallen. DFT-Rechnungen an der OMe-Verbindung sind noch in Arbeit. Im zweiten Teil dieser Arbeit wurden neutrale Ir(III) und Pt(II) Komplexe des Typs [(O^O)Ir(N^N)2] und [(O^O)Pt(N^N)] vorgestellt. Hier wurde TAA mit Acetylacetonat (acac) direkt, oder {\"u}ber eine CH2-Br{\"u}cke verbunden, um den Einfluss der Art der Verbr{\"u}ckung auf die photophysikalischen Eigenschaften zu beobachten. Als zweiz{\"a}hniger N^N-Ligand wurde 2,2'-Bipyridyl (bpy) gew{\"a}hlt. Auch hier wurden alle entsprechenden Referenzverbindungen ohne Triarylamin als Vergleich hergestellt. Zudem wurde der homoleptische fac Ir(N^N)3 Komplex mit Triarylamin, welches {\"u}ber eine Methyl- und Ethylbr{\"u}cke an Phenylpyrazol angekn{\"u}pft wurde, synthetisiert. Die Synthese des Ir(III)-Komplexes mit TAA substituiertem acac-Liganden verkn{\"u}pft {\"u}ber eine CH2-Br{\"u}cke konnte nicht hergestellt werden. Alle neutralen TAA-substituierten \&\#61538;-diketonato Pt(II) und Ir(III) Komplexe zeigen keine Lumineszenz, außer dem Pt(II)-Komplex mit CH2-Gruppe. Dieser zeigt angeregte Zust{\"a}nde die in guter {\"U}bereinstimmung mit den Emissionslebenszeiten bei RT sind. Diese sind {\"a}hnlich denen der Referenz, was auf einen 3Pt(N^N)(O^O)- Zustand schließen l{\"a}sst. Die Komplexe ohne CH2-Br{\"u}cke zeigen zudem keine transiente Absorption was auf ein Charge-Transfer-Quenching aufgrund der direkten Verkn{\"u}pfung zwischen Donor und Akzeptor zur{\"u}ckzuf{\"u}hren sein k{\"o}nnte. Der homoleptische fac Ir(N^N)3 Komplex weist weder Emission bei RT, noch transiente Absorption auf. Bei 77 K ist eine stark strukturierte Emission mit einer Abklingzeit von 14 \&\#61549;s zu beobachten. Verglichen mit dem literaturbekannten Vergleichskomplex ist die Emission auf die Bev{\"o}lkerung eines 3Ir(ppz)3-Zustandes zur{\"u}ckzuf{\"u}hren. Unsere Ergebnisse sind grundlegend f{\"u}r die Synthese weiterer Verbindungen mit st{\"a}rkeren Akzeptoren, wie z. B. Naphthalenimid, um l{\"a}ngerlebige ladungsgetrennte Zust{\"a}nde zu erhalten. Diese k{\"o}nnten Anwendung als Photosynthesiser in Solarzellen und anderen optoelektronischen Bauteilen finden. Zudem sind weiter Untersuchungen an LECs und OLEDs f{\"u}r die Carbazol-Komplexe noch immer von Interesse, um das Ausmaß der Triplett-Triplett-Annihilierung zu quantifizieren.},
  subject      = {Tiplet emiters},
  language  = {en}
}
@article{GeigerKerstingSchlegeletal.2022,
  author    = {Geiger, Nina and Kersting, Louise and Schlegel, Jan and Stelz, Linda and F{\"a}hr, Sofie and Diesendorf, Viktoria and Roll, Valeria and Sostmann, Marie and K{\"o}nig, Eva-Maria and Reinhard, Sebastian and Brenner, Daniela and Schneider-Schaulies, Sibylle and Sauer, Markus and Seibel, J{\"u}rgen and Bodem, Jochen},
  title     = {The acid ceramidase is a SARS-CoV-2 host factor},
  series = {Cells},
  volume    = {11},
  journal   = {Cells},
  number    = {16},
  issn      = {2073-4409},
  doi       = {10.3390/cells11162532},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-286105},
  year      = {2022},
  abstract  = {SARS-CoV-2 variants such as the delta or omicron variants, with higher transmission rates, accelerated the global COVID-19 pandemic. Thus, novel therapeutic strategies need to be deployed. The inhibition of acid sphingomyelinase (ASM), interfering with viral entry by fluoxetine was reported. Here, we described the acid ceramidase as an additional target of fluoxetine. To discover these effects, we synthesized an ASM-independent fluoxetine derivative, AKS466. High-resolution SARS-CoV-2-RNA FISH and RTqPCR analyses demonstrate that AKS466 down-regulates viral gene expression. It is shown that SARS-CoV-2 deacidifies the lysosomal pH using the ORF3 protein. However, treatment with AKS488 or fluoxetine lowers the lysosomal pH. Our biochemical results show that AKS466 localizes to the endo-lysosomal replication compartments of infected cells, and demonstrate the enrichment of the viral genomic, minus-stranded RNA and mRNAs there. Both fluoxetine and AKS466 inhibit the acid ceramidase activity, cause endo-lysosomal ceramide elevation, and interfere with viral replication. Furthermore, Ceranib-2, a specific acid ceramidase inhibitor, reduces SARS-CoV-2 replication and, most importantly, the exogenous supplementation of C6-ceramide interferes with viral replication. These results support the hypotheses that the acid ceramidase is a SARS-CoV-2 host factor.},
  language  = {en}
}
@phdthesis{Geiger2004,
  author    = {Geiger, Lars},
  title     = {The versatile use of Guanidiniocarbonylpyrroles : from self-assembly to peptide recognition},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-9272},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2004},
  abstract  = {Die vorliegende Arbeit gliedert sich in zwei Themenschwerpunkte. Ein supramolekulares Projekt beinhaltete die Entwicklung von neuen flexiblen, selbst-aggregierenden Zwitterionen als Bausteine f{\"u}r supramolekulare Polymere. In einem zweiten bioorganischem Teil bestand das Ziel darin, Rezeptoren f{\"u}r Aminos{\"a}uren und Dipeptide in Wasser zu entwickeln. Beide Projekte basieren auf dem Guanidiniocarbonylpyrrol als effizientes Bindungsmotiv f{\"u}r die Komplexierung von Carboxylaten in w{\"a}ssrigen L{\"o}sungen. Eine notwendige Voraussetzung f{\"u}r die Realisierung dieser Projekte war jedoch zun{\"a}chst die Entwicklung einer allgemeinen, effizienten und milden Synthese f{\"u}r Guanidiniocarbonylpyrrole. Die bei der zuvor verwendeten Methode aggressiven Reaktionsbedingungen und die problematische Aufreinigung verhinderten eine gr{\"o}ßere Anwendung dieses Bindungsmotivs in bioorganischen und supramolekularen Projekten. Im Rahmen dieser Arbeit gelang es mir erfolgreich eine neue Syntheseroute zu entwickeln. Hierbei wurde mono-tBoc-Guanidine mit dem Benzylester mittels PyBOP gekuppelt und nach Entsch{\"u}tzung der Benzylschutzgruppe wurde die zentrale Zwischenstufe f{\"u}r die weiteren Synthesen, die tBoc-gesch{\"u}tzte Guanidinocarbonylpyrrol-S{\"a}ure erhalten. Durch diese neuartige Synthese war es m{\"o}glich, eine Reihe von flexiblen Zwitterionen 3-6 herzustellen und deren Selbst-Aggregation und den Einfluß der Kettenl{\"a}nge und somit Flexibilit{\"a}t der Alkylkette auf Struktur und Stabilit{\"a}t der gebildeten Aggregate in L{\"o}sung sowie auch in der Gasphase zu untersuchen. In DMSO deuten NMR-Verd{\"u}nnungsreihen darauf hin, dass die flexiblen Zwitterionen mit n = 1, 3 und 5 oligomere Strukturen ausbilden. Im Falle von n = 1 werden hoch stabile helicale und Nanometer große Aggregate in der gebildet. In den Gasphasen-Studien wurde die Stabilit{\"a}t und Zerfallskinetik einer Reihe von Natriumaddukten der Dimere von n = 2, 3 und 5 untersucht. Dieses gelang durch die Methode der „infrared multiphoton dissociation Fourier transform ion cyclotron resonance mass spectrometry" (IRMPD-FT-ICR MS). Solche Studien erm{\"o}glichen m{\"o}glicherweise in Zukunft das gezielte Design von supramolekularen Bausteinen. Der bioorganische Teil meiner Arbeit setzte sich aus drei Einzelprojekten zusammen. So synthetisierte ich durch eine f{\"u}nfstufige Synthesesequenz vier neue Arginin-Analoga, die in Zukunft als Ersatz f{\"u}r Arginin in Peptide eingebaut werden k{\"o}nnen. Als Testreaktion f{\"u}r die Eignung dieser Verbindungen in einer Festphasenpeptidsynthese, wurde ein Tripetid Ala-AA1-Val (AA: Arginin-Analogon) mit einem eingebauten Arginin-Analogon erfolgreich hergestellt. In einem zweiten Projekt habe ich den Einfluß einer zus{\"a}tzlichen ionischen Wechselwirkung in unserem Bindungsmotiv untersucht. Dazu wurde ein zweifach-kationischer Rezeptor und der dreifach-geladenen Rezeptor synthetisiert und physikalisch-organisch ihre Bindungseigenschaften mit Hilfe von NMR-Titrationsexperimenten gegen eine Reihe von Aminos{\"a}uren untersucht. Der dreifach-kationische Rezeptor 11 zeigte hierbei herausragende Bindungseigenschaften und war um ca. den Faktor 100 besser als f{\"u}r die bisher bekannten Guanidiniocarbonylpyrrole. Die Assoziationskonstanten waren auch fast reinem Wasser mit bis zu Kass = 2000 noch bemerkenswert hoch. Im dritten Projekt habe ich einen de-novo entwickelten Rezeptor f{\"u}r C-terminale Dipeptide in einer beta-Faltblatt Struktur entwickelt.Dieser Rezeptor wurde mittels NMR and UV-Titrationen untersucht. In 40 \% Wasser/ 60 \% DMSO waren die Bindungskonstanten zu hoch um {\"u}berhaupt quantifiziert zu werden. Deshalb wurden die Bindungseigenschaften des Rezeptors mittels UV Titrationen in einer Mischung aus 90 \% Wasser mit 10 \% DMSO gegen eine Reihe von Dipeptiden und Aminos{\"a}uren getestet. Die Bindungsdaten zeigen, dass Rezeptor Dipeptide mit ausgezeichneten Bindungskonstanten (Kass > 10000 M-1) komplexiert. Im Gegensatz dazu bindet der Rezeptor 12 Aminos{\"a}uren um den Faktor zehn schlechter (Kass > 1000 M-1). Die Komplexstabilit{\"a}t nimmt hierbei in Abh{\"a}ngigkeit von der Seitenkette des Dipeptids in der Reihe Gly < Ala < Val zu, was sich mit der abnehmenden Flexibilit{\"a}t und zunehmenden Hydrophobizit{\"a}t der Seitenkette erkl{\"a}ren l{\"a}sst. Diese Eigenschaften machen den Rezeptor 12 zu dem besten bisher bekannten Dipeptidrezeptor in w{\"a}ssrigen L{\"o}sungen. Innerhalb meiner Arbeit gelang es mir somit, nicht nur eine essentiell wichtige, milde und effiziente Synthese f{\"u}r Guanidinocarbonylpyrrole zu entwickeln, sondern es gelang mir ebenso ein neues Bindungsmotiv f{\"u}r die Komplexierung von Aminos{\"a}uren in Wasser zu entwickeln. Zus{\"a}tzlich konnte noch der Dipeptidrezeptor erfolgreich synthetisiert und untersucht werden. Mit Bindungskonstanten f{\"u}r von Kass > 10000 M-1 ist er der derzeit beste Dipeptidrezeptor in w{\"a}ssriger L{\"o}sung.},
  subject      = {Guanidinderivate},
  language  = {en}
}
@article{GarainShoyamaGinderetal.2024,
  author    = {Garain, Swadhin and Shoyama, Kazutaka and Ginder, Lea-Marleen and S{\´a}rosi, Menyh{\´a}rt and W{\"u}rthner, Frank},
  title     = {The delayed box: biphenyl bisimide cyclophane, a supramolecular nano-environment for the efficient generation of delayed fluorescence},
  series = {Journal of the American Chemical Society},
  volume    = {146},
  journal   = {Journal of the American Chemical Society},
  number    = {31},
  issn      = {0002-7863},
  doi       = {10.1021/jacs.4c07730},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-370385},
  pages     = {22056-22063},
  year      = {2024},
  abstract  = {Activating delayed fluorescence emission in a dilute solution via a non-covalent approach is a formidable challenge. In this report, we propose a strategy for efficient delayed fluorescence generation in dilute solution using a non-covalent approach via supramolecularly engineered cyclophane-based nanoenvironments that provide sufficient binding strength to π-conjugated guests and that can stabilize triplet excitons by reducing vibrational dissipation and lowering the singlet-triplet energy gap for efficient delayed fluorescence emission. Toward this goal, a novel biphenyl bisimide-derived cyclophane is introduced as an electron-deficient and efficient triplet-generating host. Upon encapsulation of various carbazole-derived guests inside the nanocavity of this cyclophane, emissive charge transfer (CT) states close to the triplet energy level of the biphenyl bisimide are generated. The experimental results of host-guest studies manifest high association constants up to 10\(^4\) M\(^{-1}\) as the prerequisite for inclusion complex formation, the generation of emissive CT states, and triplet-state stabilization in a diluted solution state. By means of different carbazole guest molecules, we could realize tunable delayed fluorescence emission in this carbazole-encapsulated biphenyl bisimide cyclophane in methylcyclohexane/carbon tetrachloride solutions with a quantum yield (QY) of up to 15.6\%. Crystal structure analyses and solid-state photophysical studies validate the conclusions from our solution studies and provide insights into the delayed fluorescence emission mechanism.},
  language  = {en}
}
@article{FunkenEngelsPeyerimhoffetal.1990,
  author    = {Funken, K. and Engels, Bernd and Peyerimhoff, S.D. and Grein, F.},
  title     = {Study of the hyperfine coupling constants of the moleculs NH<sub>2</sub>, NHD and ND<sub>2</sub>},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-58875},
  year      = {1990},
  abstract  = {In the present paper we c:alculate tbe magnetic hyperfine couplina constants (hfcc) ai.ID and A11 of the ground states of the isotopes NH2, NHD and ND2 using truncated MR..CI methods. Differences from other theoretical methocls and shortoominp of the truncated Cl approach in calculating tlj10 are studied. Polarization effects wbich detennirae ailo. as weU as a simple model to describe the dipolar hfcc's, are discussed. All results are in. excellent aareement with experimental data. lt is shown that ab initio methods are able to obtain reliable values for otf-diaaonal values of A41 which are difficult to measure experimentaDy.},
  subject      = {Organische Chemie},
  language  = {en}
}
@article{FullWoelflickRadackietal.2022,
  author    = {Full, Felix and W{\"o}lflick, Quentin and Radacki, Krzysztof and Braunschweig, Holger and Nowak-Kr{\´o}l, Agnieszka},
  title     = {Enhanced Optical Properties of Azaborole Helicenes by Lateral and Helical Extension},
  series = {Chemistry - A European Journal},
  volume    = {28},
  journal   = {Chemistry - A European Journal},
  number    = {62},
  doi       = {10.1002/chem.202202280},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-293671},
  year      = {2022},
  abstract  = {The synthesis and characterization of laterally extended azabora[5]-, -[6]- and -[7]helicenes, assembled from N-heteroaromatic and dibenzo[g,p]chrysene building blocks is described. Formally, the π-conjugated systems of the pristine azaborole helicenes were enlarged with a phenanthrene unit leading to compounds with large Stokes shifts, significantly enhanced luminescence quantum yields (Φ) and dissymmetry factors (g\(_{lum}\)). The beneficial effect on optical properties was also observed for helical elongation. The combined contributions of lateral and helical extensions resulted in a compound showing green emission with Φ of 0.31 and |g\(_{lum}\)| of 2.2×10\(^{-3}\), highest within the series of π-extended azaborahelicenes and superior to emission intensity and chiroptical response of its non-extended congener. This study shows that helical and lateral extensions of π-conjugated systems are viable strategies to improve features of azaborole helicenes. In addition, single crystal X-ray analysis of configurationally stable [6]- and -[7]helicenes was used to provide insight into their packing arrangements.},
  language  = {en}
}
@article{FroudakisZdetsisMuehlhaeuseretal.1994,
  author    = {Froudakis, G. and Zdetsis, A. and M{\"u}hlh{\"a}user, M. and Engels, Bernd and Peyerimhoff, S. D.},
  title     = {A comparative ab initio study of the Si\(_2\)C\(_4\), Si\(_3\)C\(_3\), Si\(_4\)C\(_2\) clusters},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-59097},
  year      = {1994},
  abstract  = {Various structural possibilities for the Si\(_2\)C\(_4\) and Si\(_4\)C\(_2\) clusters are investigated by employing a basis set of triple-zeta plus polarization quality; electron correlation is generally accounted for by second-order M0ller-Plesset and, in certain instances, by higher-order perturbation (CASPT2) approaches. The building-up principle recently suggested from an analysis of Si\(_3\)C\(_3\) clusters is found to be fully operative for Si\(_2\)C\(_4\) and Si\(_4\)C\(_2\) clusters. A comparison of the structure and stability of various geometrical arrangements in the series C\(_6\) , Si\(_2\)C\(_4\) , Si\(_3\)C\(_3\) , Si\(_4\)C\(_2\), and Si\(_6\) shows that linear and planar structures become rapidly less stable if carbons are replaced by silicons and that the three-dimensional bipyramidal forms become less favorable as soon as silicons are exchanged by carbons in the parent Si\(_6\) structure. The effects can be rationalized in qualitative terms based on differences in silicon and carbon bonding.},
  subject      = {Organische Chemie},
  language  = {en}
}
@phdthesis{Fimmel2015,
  author    = {Fimmel, Benjamin},
  title     = {Perylene Bisimide Foldamers: Synthesis and In-Depth Studies of the Ground- and Excited States Properties},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-125173},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2015},
  abstract  = {In this thesis the syntheses and detailed investigations on two foldable PBI systems were presented. The reversible, solvent-dependet folding/unfolding-behavior was used to study the ground and excited states properties of folda-dimer and folda-trimer by means of different spectroscopic methods as well as theoretical studies. The switching between charge transfer or excimer formation pathways of photoexcited molecules influenced by the spatial arrangement of chromophores within defined dye systems illustrates the impact of conformational preferences on functional properties.},
  subject      = {Perylenbisdicarboximide <Perylen-3,4:9,10-bis(dicarboximide)>},
  language  = {en}
}
@unpublished{FerschMalyRueheetal.2023,
  author    = {Fersch, Daniel and Mal{\´y}, Pavel and R{\"u}he, Jessica and Lisinetskii, Victor and Hensen, Matthias and W{\"u}rthner, Frank and Brixner, Tobias},
  title     = {Single-Molecule Ultrafast Fluorescence-Detected Pump-Probe Microscopy},
  doi       = {10.25972/OPUS-31348},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-313485},
  year      = {2023},
  abstract  = {We introduce fluorescence-detected pump-probe microscopy by combining a wavelength-tunable ultrafast laser with a confocal scanning fluorescence microscope, enabling access to the femtosecond time scale on the micrometer spatial scale. In addition, we obtain spectral information from Fourier transformation over excitation pulse-pair time delays. We demonstrate this new approach on a model system of a terrylene bisimide (TBI) dye embedded in a PMMA matrix and acquire the linear excitation spectrum as well as time-dependent pump-probe spectra simultaneously. We then push the technique towards single TBI molecules and analyze the statistical distribution of their excitation spectra. Furthermore, we demonstrate the ultrafast transient evolution of several individual molecules, highlighting their different behavior in contrast to the ensemble due to their individual local environment. By correlating the linear and nonlinear spectra, we assess the effect of the molecular environment on the excited-state energy.},
  subject      = {Fluoreszenz},
  language  = {en}
}