@phdthesis{Kerner2021, author = {Kerner, Florian Tobias}, title = {Reactions of rhodium(I) with diynes and studies of the photophysical behavior of the luminescent products}, doi = {10.25972/OPUS-20910}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-209107}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {Chapter 1 deals with the reaction of [Rh(acac)(PMe3)2] with para-substituted 1,4-diphenylbuta-1,3-diynes at room temperature, in which a complex containing a bidentate organic fulvene moiety, composed of two diynes, σ-bound to the rhodium center is formed in an all-carbon [3+2] type cyclization reaction. In addition, a complex containing an organic indene moiety, composed of three diynes, attached to the rhodium center in a bis-σ-manner is formed in a [3+2+3] cyclization process. Reactions at 100 °C reveal that the third diyne inserts between the rhodium center and the bis-σ-bound organic fulvene moiety. Furthermore, the formation of a 2,5- and a 2,4-bis(arylethynyl)rhodacyclopentadiene is observed. The unique [3+2] cyclization product was used for the synthesis of a highly conjugated organic molecule, which is hard to access or even inaccessible by conventional methods. Thus, at elevated temperatures, reaction of the [3+2] product with para-tolyl isocyanate led to the formation of a purple organic compound containing the organic fulvene structure and one equivalent of para-tolyl isocyanate. The blue and green [3+2+3] complexes show an unusually broad absorption from 500 - 1000 nm with extinction coefficients ε of up to 11000 M-1 cm-1. The purple organic molecule shows an absorption spectrum similar to those of known diketopyrrolopyrroles. Additionally, the reaction of [Rh(acac)(PMe3)2] with para-tolyl isocyanate was investigated. A cis-phosphine complex of the form cis-[Rh(acac)(PMe3)2(isocyanate)2] with an isocyanate dimer bound to the rhodium center by one carbon and one oxygen atom was isolated. Replacing the trimethylphosphine ligands in [Rh(acac)(PMe3)2] with the stronger σ-donating NHC ligand Me2Im (1,3-dimethylimidazolin-2-ylidene), again, drastically alters the reaction. Similar [3+2] and [3+2+3] products to those discussed above could not be unambiguously assigned, but cis- and trans-π-complexes, which are in an equilibrium with the two starting materials, were formed. Chapters 2 is about the influence of the backbone of the α,ω-diynes on the formation and photophysical properties of 2,5-bis(aryl)rhodacyclopentadienes. Therefore, different α,ω-diynes were reacted with [Rh(acac)(PMe3)2] and [Rh(acac)(P(p-tolyl)3)2] in equimolar amounts. In general, a faster consumption of the rhodium(I) starting material is observed while using preorganized α,ω-diynes with electron withdrawing substituents in the backbone. The isolated PMe3-substituted rhodacyclopentadienes exhibit fluorescence, despite the presence of the heavy atom rhodium, with lifetimes τF of < 1 ns and photoluminescence quantum yields Φ of < 0.01 as in previously reported P(p-tolyl)-substituted 2,5-bis(arylethynyl)rhodacyclopentadienes. However, an isolated P(p-tolyl)-substituted 2,5-bis(aryl)rhodacyclopentadiene shows multiple lifetimes and different absorption and excitation spectra leading to the conclusion that different species may be present. Reaction of [Rh(acac)(Me2Im)2] with dimethyl 4,4'-(naphthalene-1,8-diylbis(ethyne-2,1-diyl))dibenzoate, results in the formation of a mixture trans- and cis-NHC-substituted 2,5-bis(aryl)rhodacyclopentadienes. In chapter 3 the reaction of various acac- and diethyldithiocarbamate-substituted rhodium(I) catalysts bearing (chelating)phosphines with α,ω-bis(arylethynyl)alkanes (α,ω-diynes), yielding luminescent dimers and trimers, is described. The photophysical properties of dimers and trimers of the α,ω-diynes were investigated and compared to para-terphenyl, showing a lower quantum yield and a larger apparent Stokes shift. Furthermore, a bimetallic rhodium(I) complex of the form [Rh2(ox)(P(p-tolyl)3)4] (ox: oxalate) was reacted with a CO2Me-substituted α,ω-tetrayne forming a complex in which only one rhodium(I) center reacts with the α,ω-tetrayne. The photophysical properties of this mixed rhodium(I)/(III) species shows only negligible differences compared to the P(p-tolyl)- and CO2Me-substituted 2,5-bis(arylethynyl)rhodacyclopentadiene, previously synthesized by Marder and co-workers.}, subject = {{\"U}bergangsmetallkomplexe}, language = {en} } @phdthesis{Yang2021, author = {Yang, Tao}, title = {Functional insights into the role of a bacterial virulence factor and a host factor in Neisseria gonorrhoeae infection}, doi = {10.25972/OPUS-20895}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-208959}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {Neisseria gonorrhoeae (GC) is a human specific pathogenic bacterium. Currently, N. gonorrhoeae developed resistance to virtually all the available antibiotics used for treatment. N. gonorrhoeae starts infection by colonizing the cell surface, followed by invasion of the host cell, intracellular persistence, transcytosis and exit into the subepithelial space. Subepithelial bacteria can reach the bloodstream and disseminate to other tissues causing systemic infections, which leads to serious conditions such as arthritis and pneumonia. A number of studies have well established the host-pathogen interactions during the initial adherence and invasion steps. However, the mechanism of intracellular survival and traversal is poorly understood so far. Hence, identification of novel bacterial virulence factors and host factors involved in the host-pathogen interaction is a crucial step in understanding disease development and uncovering novel therapeutic approaches. Besides, most of the previous studies about N. gonorrhoeae were performed in the conventional cell culture. Although they have provided insights into host-pathogen interactions, much information about the native infection microenvironment, such as cell polarization and barrier function, is still missing. This work focused on determining the function of novel bacterial virulence factor NGFG_01605 and host factor (FLCN) in gonococcal infection. NGFG_01605 was identified by Tn5 transposon library screening. It is a putative U32 protease. Unlike other proteins in this family, it is not secreted and has no ex vivo protease activity. NGFG_01605 knockout decreases gonococcal survival in the epithelial cell. 3D models based on T84 cell was developed for the bacterial transmigration assay. NGFG_01605 knockout does not affect gonococcal transmigration. The novel host factor FLCN was identified by shRNA library screening in search for factors that affected gonococcal adherence and/or internalization. We discovered that FLCN did not affect N. gonorrhoeae adherence and invasion but was essential for bacterial survival. Since programmed cell death is a host defence mechanism against intracellular pathogens, we further explored apoptosis and autophagy upon gonococcal infection and determined that FLCN did not affect apoptosis but inhibited autophagy. Moreover, we found that FLCN inhibited the expression of E-cadherin. Knockdown of E- cadherin decreased the autophagy flux and supported N. gonorrhoeae survival. Both non-polarized and polarized cells are present in the cervix, and additionally, E-cadherin represents different polarization properties on these different cells. Therefore, we established 3-D models to better understand the functions of FLCN. We discovered that FLCN was critical for N. gonorrhoeae survival in the 3-D environment as well, but not through inhibiting autophagy. Furthermore, FLCN inhibits the E-cadherin expression and disturbs its polarization in the 3-D models. Since N. gonorrhoeae can cross the epithelial cell barriers through both cell-cell junctions and transcellular migration, we further explored the roles FLCN and E-cadherin played in transmigration. FLCN delayed N. gonorrhoeae transmigration, whereas the knockdown of E-cadherin increased N. gonorrhoeae transmigration. In summary, we revealed roles of the NGFG_01605 and FLCN-E-cadherin axis play in N. gonorrhoeae infection, particularly in relation to intracellular survival and transmigration. This is also the first study that connects FLCN and human-specific pathogen infection.}, language = {en} } @phdthesis{Klein2021, author = {Klein, Thomas}, title = {Establishing an in vitro disease model for Fabry Disease using patient specific induced pluripotent stem cell-derived sensory neurons}, doi = {10.25972/OPUS-19970}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-199705}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {Fabry disease (FD) is an X-linked lysosomal storage disorder caused by deficiency of the α-galactosidase A (GLA), leading to intracellular accumulations of globotriaosylceramide (Gb3). Acral burning pain, which can be triggered by heat, fever or physical activity is an early hallmark of FD and greatly reduces patients' quality of life. The pathophysiology of FD pain is unknown and research is hindered by the limited in vivo availability of suitable human biomaterial. To overcome this obstacle, we generated induced pluripotent stem cells (iPSC) from one female and two male patients with a differing pain phenotype, and developed a refined differentiation protocol for sensory neurons to increase reliability and survival of these neurons, serving as an in vitro disease model. Neurons were characterized for the correct neuronal subtype using immunocytochemistry, gene expression analysis, and for their functionality using electrophysiological measurements. iPSC and sensory neurons from the male patients showed Gb3 accumulations mimicking the disease phenotype, whereas no Gb3 depositions were detected in sensory neurons derived from the female cell line, likely caused by a skewed X-chromosomal inactivation in favor of healthy GLA. Using super-resolution imaging techniques we showed that Gb3 is localized in neuronal lysosomes of male patients and in a first experiment using dSTORM microscopy we were able to visualize the neuronal membrane in great detail. To test our disease model, we treated the neurons with enzyme replacement therapy (ERT) and analyzed its effect on the cellular Gb3 load, which was reduced in the male FD-lines, compared to non-treated cells. We also identified time-dependent differences of Gb3 accumulations, of which some seemed to be resistant to ERT. We also used confocal Ca2+ imaging to investigate spontaneous neuronal network activity, but analysis of the dataset proofed to be difficult, nonetheless showing a high potential for further investigations. We revealed that neurons from a patient with pain pain are more easily excitable, compared to cells from a patient without pain and a healthy control. We provide evidence for the potential of patient-specific iPSC to generate a neuronal in vitro disease model, showing the typical molecular FD phenotype, responding to treatment, and pointing towards underlying electrophysiological mechanisms causing different pain phenotypes. Our sensory neurons are suitable for state-of-the-art microscopy techniques, opening new possibilities for an in-depth analysis of cellular changes, caused by pathological Gb3 accumulations. Taken together, our system can easily be used to investigate the effect of the different mutations of GLA on a functional and a molecular level in affected neurons.}, subject = {Induzierte pluripotente Stammzelle}, language = {en} } @phdthesis{Vollmuth2021, author = {Vollmuth, Nadine}, title = {Role of the proto-oncogene c-Myc in the development of Chlamydia trachomatis}, doi = {10.25972/OPUS-20365}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-203655}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {Chlamydia trachomatis, an obligate intracellular human pathogen, is the world's leading cause of infection related blindness and the most common, bacterial sexually transmitted disease. In order to establish an optimal replicative niche, the pathogen extensively interferes with the physiology of the host cell. Chlamydia switches in its complex developmental cycle between the infectious non-replicative elementary bodies (EBs) and the non-infectious replicative reticulate bodies (RBs). The transformation to RBs, shortly after entering a host cell, is a crucial process in infection to start chlamydial replication. Currently it is unknown how the transition from EBs to RBs is initiated. In this thesis, we could show that, in an axenic media approach, L glutamine uptake by the pathogen is crucial to initiate the EB to RB transition. L-glutamine is converted to amino acids which are used by the bacteria to synthesize peptidoglycan. Peptidoglycan inturn is believed to function in separating dividing Chlamydia. The glutamine metabolism is reprogrammed in infected cells in a c-Myc-dependent manner, in order to accomplish the increased requirement for L-glutamine. Upon a chlamydial infection, the proto-oncogene c-Myc gets upregulated to promote host cell glutaminolysis via glutaminase GLS1 and the L-glutamine transporter SLC1A5/ASCT2. Interference with this metabolic reprogramming leads to limited growth of C. trachomatis. Besides the active infection, Chlamydia can persist over a long period of time within the host cell whereby chronic and recurrent infections establish. C. trachomatis acquire a persistent state during an immune attack in response to elevated interferon-γ (IFN-γ) levels. It has been shown that IFN-γ activates the catabolic depletion of L-tryptophan via indoleamine 2,3-dioxygenase (IDO), resulting in the formation of non-infectious atypical chlamydial forms. In this thesis, we could show that IFN-γ depletes the key metabolic regulator c-Myc, which has been demonstrated to be a prerequisite for chlamydial development and growth, in a STAT1-dependent manner. Moreover, metabolic analyses revealed that the pathogen de routs the host cell TCA cycle to enrich pyrimidine biosynthesis. Supplementing pyrimidines or a-ketoglutarate helps the bacteria to partially overcome the persistent state. Together, the results indicate a central role of c-Myc induced host glutamine metabolism reprogramming and L-glutamine for the development of C. trachomatis, which may provide a basis for anti-infectious strategies. Furthermore, they challenge the longstanding hypothesis of L-tryptophan shortage as the sole reason for IFN-γ induced persistence and suggest a pivotal role of c-Myc in the control of the C. trachomatis dormancy.}, language = {en} } @phdthesis{Mayer2021, author = {Mayer, Alexander E.}, title = {Protein kinase D3 signaling in the regulation of liver metabolism}, doi = {10.25972/OPUS-20797}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-207978}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {The liver plays a pivotal role in maintaining energy homeostasis. Hepatic carbohydrate and lipid metabolism are tightly regulated in order to adapt quickly to changes in nutrient availability. Postprandially, the liver lowers the blood glucose levels and stores nutrients in form of glycogen and triglycerides (TG). In contrast, upon fasting, the liver provides glucose, TG, and ketone bodies. However, obesity resulting from a discrepancy in food intake and energy expenditure leads to abnormal fat accumulation in the liver, which is associated with the development of hepatic insulin resistance, non-alcoholic fatty liver disease, and diabetes. In this context, hepatic insulin resistance is directly linked to the accumulation of diacylglycerol (DAG) in the liver. Besides being an intermediate product of TG synthesis, DAG serves as second messenger in response to G-protein coupled receptor signaling. Protein kinase D (PKD) family members are DAG effectors that integrate multiple metabolic inputs. However, the impact of PKD signaling on liver physiology has not been studied so far. In this thesis, PKD3 was identified as the predominantly expressed isoform in liver. Stimulation of primary hepatocytes with DAG as well as high-fat diet (HFD) feeding of mice led to an activation of PKD3, indicating its relevance during obesity. HFD-fed mice lacking PKD3 specifically in hepatocytes displayed significantly improved glucose tolerance and insulin sensitivity. However, at the same time, hepatic deletion of PKD3 in mice resulted in elevated liver weight as a consequence of increased hepatic lipid accumulation. Lack of PKD3 in hepatocytes promoted sterol regulatory element-binding protein (SREBP)-mediated de novo lipogenesis in vitro and in vivo, and thus increased hepatic triglyceride and cholesterol content. Furthermore, PKD3 suppressed the activation of SREBP by impairing the activity of the insulin effectors protein kinase B (AKT) and mechanistic target of rapamycin complexes (mTORC) 1 and 2. In contrast, liver-specific overexpression of constitutive active PKD3 promoted glucose intolerance and insulin resistance. Taken together, lack of PKD3 improves hepatic insulin sensitivity but promotes hepatic lipid accumulation. For this reason, manipulating PKD3 signaling might be a valid strategy to improve hepatic lipid content or insulin sensitivity. However, the exact molecular mechanism by which PKD3 regulates hepatocytes metabolism remains unclear. Unbiased proteomic approaches were performed in order to identify PKD3 phosphorylation targets. In this process, numerous potential targets of PKD3 were detected, which are implicated in different aspects of cellular metabolism. Among other hits, phenylalanine hydroxylase (PAH) was identified as a target of PKD3 in hepatocytes. PAH is the enzyme that is responsible for the conversion of phenylalanine to tyrosine. In fact, manipulation of PKD3 activity using genetic tools confirmed that PKD3 promotes PAH-dependent conversion of phenylalanine to tyrosine. Therefore, the data in this thesis suggests that PKD3 coordinates lipid and amino acid metabolism in the liver and contributes to the development of hepatic dysfunction.}, subject = {Metabolismus}, language = {en} } @phdthesis{Herz2021, author = {Herz, Michaela}, title = {Genome wide expression profiling of Echinococcus multilocularis}, doi = {10.25972/OPUS-20380}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-203802}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {Alveolar echinococcosis, which is caused by the metacestode stage of the small fox tapeworm Echinococcus multilocularis, is a severe zoonotic disease with limited treatment options. For a better understanding of cestode biology the genome of E. multilocularis, together with other cestode genomes, was sequenced previously. While a few studies were undertaken to explore the E. multilocularis transcriptome, a comprehensive exploration of global transcription profiles throughout life cycle stages is lacking. This work represents the so far most comprehensive analysis of the E. multilocularis transcriptome. Using RNA-Seq information from different life cycle stages and experimental conditions in three biological replicates, transcriptional differences were qualitatively and quantitatively explored. The analyzed datasets are based on samples of metacestodes cultivated under aerobic and anaerobic conditions as well as metacestodes obtained directly from infected jirds. Other samples are stem cell cultures at three different time points of development as well as non-activated and activated protoscoleces, the larval stage that can develop into adult worms. In addition, two datasets of metacestodes under experimental conditions suitable for the detection of genes that are expressed in stem cells, the so-called germinative cells, and one dataset from a siRNA experiment were analyzed. Analysis of these datasets led to expression profiles for all annotated genes, including genes that are expressed in the tegument of metacestodes and play a role in host-parasite interactions and modulation of the host's immune response. Gene expression profiles provide also further information about genes that might be responsible for the infiltrative growth of the parasite in the liver. Furthermore, germinative cell-specific genes were identified. Germinative cells are the only proliferating cells in E. multilocularis and therefore of utmost importance for the development and growth of the parasite. Using a combination of germinative cell depletion and enrichment methods, genes with specific expression in germinative cells were identified. As expected, many of these genes are involved in translation, cell cycle regulation or DNA replication and repair. Also identified were transcription factors, many of which are involved in cell fate commitment. As an example, the gene encoding the telomerase reverse transcriptase (TERT) was studied further. Expression of E. multilocularis tert in germinative cells was confirmed experimentally. Cell culture experiments indicate that TERT is required for proliferation and development of the parasite, which makes TERT a potentially interesting drug target for chemotherapy of alveolar echinococcosis. Germinative cell specific genes in E. multilocularis also include genes of densoviral origin. More than 20 individual densovirus loci with information for non-structural and structural densovirus proteins were identified in the E. multilocularis genome. Densoviral elements were also detected in many other cestode genomes. Genomic integration of these elements suggests that densovirus-based vectors might be suitable tools for genetic manipulation of tapeworms. Interestingly, only three of more than 20 densovirus loci in the E. multilocularis genome are expressed. Since the canonical piRNA pathway is lacking in cestodes, this raises the question about potential silencing mechanisms. Exploration of RNA-Seq information indicated natural antisense transcripts as a potential gene regulation mechanism in E. multilocularis. Preliminary experiments further suggest DNA-methylation, which was previously shown to occur in platyhelminthes, as an interesting avenue to explore in future. The transcriptome datasets also contain information about genes that are expressed in differentiated cells, for example the serotonin transporter gene that is expressed in nerve cells. Cell culture experiments indicate that serotonin and serotonin transport play an important role in E. multilocularis proliferation, development and survival. Overall, this work provides a comprehensive transcription data atlas throughout the E. multilocularis life cycle. Identification of germinative cell-specific genes and genes important for host-parasite interactions will greatly facilitate future research. A global overview of gene expression profiles will also aide in the detection of suitable drug targets and the development of new chemotherapeutics against alveolar echinococcosis.}, subject = {Fuchsbandwurm}, language = {en} } @phdthesis{LiessneeEller2021, author = {Liess [n{\´e}e Eller], Anna Katharina Luise}, title = {Understanding the regulation of the ubiquitin-conjugating enzyme UBE2S}, doi = {10.25972/OPUS-20419}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-204190}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {The ubiquitination of proteins serves as molecular signal to control an enormous number of physiological processes and its dysregulation is connected to human diseases like cancer. The versatility of this signal stems from the diverse ways by which ubiquitin can be attached to its targets. Thus, specificity and tight regulation of the ubiquitination are pivotal requirements of ubiquitin signaling. Ubiquitin-conjugating enzymes (E2s) act at the heart of the ubiquitination cascade, transferring ubiquitin from a ubiquitin-activating enzyme (E1) to a ubiquitin ligase (E3) or substrate. When cooperating with a RING-type E3, ubiquitin-conjugating enzymes can determine linkage specificity in ubiquitin chain formation. Our understanding of the regulation of E2 activities is still limited at a structural level. The work described here identifies two regulation mechanisms in UBE2S, a cognate E2 of the human RING-type E3 anaphase-promoting complex/cyclosome (APC/C). UBE2S elongates ubiquitin chains on APC/C substrates in a Lys11 linkage-specific manner, thereby targeting these substrates for degradation and driving mitotic progression. In addition, UBE2S was found to have a role in DNA repair by enhancing non-homologous end-joining (NHEJ) and causing transcriptional arrest at DNA damage sites in homologous recombination (HR). Furthermore, UBE2S overexpression is a characteristic feature of many cancer types and is connected to poor prognosis and diminished response to therapy. The first regulatory mechanism uncovered in this thesis involves the intramolecular auto-ubiquitination of a particular lysine residue (Lys+5) close to the active site cysteine, presumably through conformational flexibility of the active site region. The Lys+5-linked ubiquitin molecule adopts a donor-like, 'closed' orientation towards UBE2S, thereby conferring auto-inhibition. Notably, Lys+5 is a major physiological ubiquitination site in ~25\% of the human E2 enzymes, thus providing regulatory opportunities beyond UBE2S. Besides the active, monomeric state and the auto-inhibited state caused by auto-ubiquitination, I discovered that UBE2S can adopt a dimeric state. The latter also provides an auto-inhibited state, in which ubiquitin transfer is blocked via the obstruction of donor binding. UBE2S dimerization is promoted by its unique C-terminal extension, suppresses auto-ubiquitination and thereby the proteasomal degradation of UBE2S. Taken together, the data provided in this thesis illustrate the intricate ways by which UBE2S activity is fine-tuned and the notion that structurally diverse mechanisms have evolved to restrict the first step in the catalytic cycle of E2 enzymes.}, subject = {E2}, language = {en} } @phdthesis{Dannhaeuser2021, author = {Dannh{\"a}user, Sven}, title = {Function of the Drosophila adhesion-GPCR Latrophilin/CIRL in nociception and neuropathy}, doi = {10.25972/OPUS-20158}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-201580}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {Touch sensation is the ability to perceive mechanical cues which is required for essential behaviors. These encompass the avoidance of tissue damage, environmental perception, and social interaction but also proprioception and hearing. Therefore research on receptors that convert mechanical stimuli into electrical signals in sensory neurons remains a topical research focus. However, the underlying molecular mechanisms for mechano-metabotropic signal transduction are largely unknown, despite the vital role of mechanosensation in all corners of physiology. Being a large family with over 30 mammalian members, adhesion-type G protein-coupled receptors (aGPCRs) operate in a vast range of physiological processes. Correspondingly, diverse human diseases, such as developmental disorders, defects of the nervous system, allergies and cancer are associated with these receptor family. Several aGPCRs have recently been linked to mechanosensitive functions suggesting, that processing of mechanical stimuli may be a common feature of this receptor family - not only in classical mechanosensory structures. This project employed Drosophila melanogaster as the candidate to analyze the aGPCR Latrophilin/dCIRL function in mechanical nociception in vivo. To this end, we focused on larval sensory neurons and investigated molecular mechanisms of dCIRL activity using noxious mechanical stimuli in combination with optogenetic tools to manipulate second messenger pathways. In addition, we made use of a neuropathy model to test for an involvement of aGPCR signaling in the malfunctioning peripheral nervous system. To do so, this study investigated and characterized nocifensive behavior in dCirl null mutants (dCirlKO) and employed genetically targeted RNA-interference (RNAi) to cell-specifically manipulate nociceptive function. The results revealed that dCirl is transcribed in type II class IV peripheral sensory neurons - a cell type that is structurally similar to mammalian nociceptors and detects different nociceptive sensory modalities. Furthermore, dCirlKO larvae showed increased nocifensive behavior which can be rescued in cell specific reexpression experiments. Expression of bPAC (bacterial photoactivatable adenylate cyclase) in these nociceptive neurons enabled us to investigate an intracellular signaling cascade of dCIRL function provoked by light-induced elevation of cAMP. Here, the findings demonstrated that dCIRL operates as a down-regulator of nocifensive behavior by modulating nociceptive neurons. Given the clinical relevance of this results, dCirl function was tested in a chemically induced neuropathy model where it was shown that cell specific overexpression of dCirl rescued nocifensive behavior but not nociceptor morphology.}, subject = {Drosophila}, language = {en} } @phdthesis{Gruendl2021, author = {Gr{\"u}ndl, Marco}, title = {Biochemical characterization of the MMB-Hippo crosstalk and its physiological relevance for heart development}, doi = {10.25972/OPUS-21332}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-213328}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {The Myb-MuvB (MMB) complex plays an essential role in the time-dependent transcriptional activation of mitotic genes. Recently, our laboratory identified a novel crosstalk between the MMB-complex and YAP, the transcriptional coactivator of the Hippo pathway, to coregulate a subset of mitotic genes (Pattschull et al., 2019). Several genetic studies have shown that the Hippo-YAP pathway is essential to drive cardiomyocyte proliferation during cardiac development (von Gise et al., 2012; Heallen et al., 2011; Xin et al., 2011). However, the exact mechanisms of how YAP activates proliferation of cardiomyocytes is not known. This doctoral thesis addresses the physiological role of the MMB-Hippo crosstalk within the heart and characterizes the YAP-B-MYB interaction with the overall aim to identify a potent inhibitor of YAP. The results reported in this thesis indicate that complete loss of the MMB scaffold protein LIN9 in heart progenitor cells results in thinning of ventricular walls, reduced cardiomyocyte proliferation and early embryonic lethality. Moreover, genetic experiments using mice deficient in SAV1, a core component of the Hippo pathway, and LIN9-deficient mice revealed that the correct function of the MMB complex is critical for proliferation of cardiomyocytes due to Hippo-deficiency. Whole genome transcriptome profiling as well as genome wide binding studies identified a subset of Hippo-regulated cell cycle genes as direct targets of MMB. By proximity ligation assay (PLA), YAP and B-MYB were discovered to interact in embryonal cardiomyocytes. Biochemical approaches, such as co-immunoprecipitation assays, GST-pulldown assays, and µSPOT-based peptide arrays were employed to characterize the YAP-B-MYB interaction. Here, a PY motif within the N-terminus of B-MYB was found to directly interact with the YAP WW-domains. Consequently, the YAP WW-domains were important for the ability of YAP to drive proliferation in cardiomyocytes and to activate MMB target genes in differentiated C2C12 cells. The biochemical information obtained from the interaction studies was utilized to develop a novel competitive inhibitor of YAP called MY-COMP (Myb-YAP competition). In MY-COMP, the protein fragment of B-MYB containing the YAP binding domain is fused to a nuclear localization signal. Co-immunoprecipitation studies as well as PLA revealed that the YAP-B-MYB interaction is robustly blocked by expression of MY-COMP. Adenoviral overexpression of MY-COMP in embryonal cardiomyocytes suppressed entry into mitosis and blocked the pro-proliferative function of YAP. Strikingly, characterization of the cellular phenotype showed that ectopic expression of MY-COMP led to growth defects, nuclear abnormalities and polyploidization in HeLa cells. Taken together, the results of this thesis reveal the mechanism of the crosstalk between the Hippo signaling pathway and the MMB complex in the heart and form the basis for interference with the oncogenic activity of the Hippo coactivator YAP.}, subject = {Zellzyklus}, language = {en} } @phdthesis{vonMeyer2021, author = {von Meyer, Katharina}, title = {Molecular characterization of defensin-like proteins in the fertilization process of \(Nicotiana\) \(tabacum\)}, doi = {10.25972/OPUS-19214}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-192141}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {Flowering plants or angiosperms have developed a fertilization mechanism that involves a female egg and central cell, as well as two male sperm cells. A male gametophyte carries the two non-mobile sperm cells, as they need to be delivered to the female gametophyte, the embryo sac. This transport is initiated by a pollen grain that is transmitted onto the stigma of the angiosperm flower. Here it hydrates, germinates, and forms a pollen tube, which navigates through the female plant tissue towards the ovary. The pollen tube grows into an ovule through the funiculus and into one of the two synergid cells. There, growth arrests and the pollen tube bursts, releasing the two sperm cells. One of the sperm cells fuses with the egg cell, giving rise to the embryo, the other one fuses with the central cell, developing into the endosperm, which nourishes the embryo during its development. After a successful fertilization, each ovule develops into a seed and a fruit is formed. This usually consists of several fertilized ovules. The directional growth of the pollen tube through the maternal tissues towards the ovule, as well as sperm cell release, requires a complex communication between the male and the female gametophyte to achieve reproductive success. Over the last years many studies have been performed, contributing to the understanding of cell-cell communication events between the two gametophytes, nevertheless still many aspects remain to be elucidated. This work focused on two topics: i.) Analysis of biological processes affected by pollination and fertilization in the Nicotiana tabacum flower and identification of cysteine rich proteins (CRPs) expressed via isolating and sequencing RNA from the tissue and analyzing the resulting data. ii.) Identification of the defensin-like protein (DEFL) responsible for pollen tube attraction towards the ovule in tobacco. First, tissue samples of pollen tubes and mature ovules were taken at different stages of the fertilization process (unpollinated ovules, after pollination, and after fertilization of the flower). RNA was then isolated and a transcriptome was created. The resulting reads were assembled and transcriptome data analysis was performed. Results showed that pollen tubes and mature ovules differ severely from each other, only sharing about 23 \% of the transcripts, indicating that different biological processes are dominant in the two gametophytes. A MapMan analysis revealed that in the pollen tube the most relevant biological processes are related to the cell wall, signaling, and transport, which supports the fact that the pollen tube grows fast to reach the ovule. On the other hand, in the ovule the values of highest significance were obtained for processes related to protein synthesis and regulation. Upon comparing the transcripts in the ovule before and after pollination, as well as after fertilization, it showed that pollination of the flower causes a bigger alteration in the ovule on the transcriptomic level compared to the step from pollination to fertilization. A total of 953 CRPs were identified in Nicotiana tabacum, including 116 DEFLs. Among those, the peptide responsible for pollen tube attraction towards the ovule should be found. Based on in-silico analysis four candidate peptides were chosen for further analysis, two of which had increased expression levels upon pollination and fertilization and the other two displayed an opposite expression. Quantitative real time PCR experiments were performed for the candidates, confirming the in-silico data in vivo. The candidate transcripts were then expressed in a cell free system and applied to pollen tubes in order to test their effect on the growing cells. Positive controls were used, where pollen tubes grew towards freshly dissected ovules. The four candidates did not provoke a pollen tube attraction towards the peptide, leaving open the chance to work on the 112 remaining DEFLs in the future.}, subject = {Samenpflanzen}, language = {en} } @phdthesis{Becker2021, author = {Becker, Isabelle Carlotta}, title = {The role of megakaryocytes and platelets in vascular and osteogenic development}, doi = {10.25972/OPUS-21024}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-210241}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {Platelets, small anucleate cell fragments in the blood stream, derive from large precursor cells, so-called megakaryocytes (MK) residing in the bone marrow (BM). In addition to their role in wound healing, platelets have been shown to play a significant role during inflammatory bleeding. Above all, the immunoreceptor tyrosine-based activation motif (ITAM) receptors GPVI as well as CLEC-2 have been identified as main regulators of vascular integrity. In addition to ITAM-bearing receptors, our group identified GPV as another potent regulator of hemostasis and thrombosis. Surprisingly, concomitant lack of GPV and CLEC-2 deteriorated blood-lymphatic misconnections observed in Clec2-/- mice resulting in severe edema formation and intestinal inflammation. Analysis of lymphatic and vascular development in embryonic mesenteries revealed severely defective blood-lymph-vessel separation, which translated into thrombocytopenia and increased vascular permeability due to reduced tight junction density in mesenteric blood vessels and consequent leakage of blood into the peritoneal cavity. Recently, platelet granule release has been proposed to ameliorate the progression of retinopathy of prematurity (ROP), a fatal disease in newborns leading to retinal degradation. The mechanisms governing platelet activation in this process remained elusive nonetheless, which prompted us to investigate a possible role of ITAM signaling. In the second part of this thesis, granule release during ROP was shown to be GPVI- and partly CLEC-2-triggered since blockade or loss of these receptors markedly deteriorated ROP progression. Proplatelet formation from MKs is highly dependent on a functional microtubule and actin cytoskeleton, the latter of which is regulated by several actin-monomer binding proteins including Cofilin1 and Twinfilin1 that have been associated with actin-severing at pointed ends. In the present study, a redundancy between both proteins especially important for the guided release of proplatelets into the bloodstream was identified, since deficiency in both proteins markedly impaired MK functionality mainly due to altered actin-microtubule crosstalk. Besides ITAM-triggered activation, platelets and MKs are dependent on inhibitory receptors, which prevent overshooting activation. We here identified macrothrombocytopenic mice with a mutation within Mpig6b encoding the ITIM-bearing receptor G6b-B. G6b-B-mutant mice developed a severe myelofibrosis associated with sex-specific bone remodeling defects resulting in osteosclerosis and -porosis in female mice. Moreover, G6b-B was shown to be indispensable for MK maturation as verified by a significant reduction in MK-specific gene expression in G6b-B-mutant MKs due to reduced GATA-1 activity.}, subject = {Megakaryozyt}, language = {en} } @phdthesis{Weigand2021, author = {Weigand, Isabel}, title = {Consequences of Protein Kinase A mutations in adrenocortical cells and tumours}, doi = {10.25972/OPUS-16064}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-160646}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {Adrenal Cushing's Syndrome (CS) is a rare but life-threatening disease and therefore it is of great importance to understand the pathogenesis leading to adrenal CS. It is well accepted that Protein Kinase A (PKA) signalling mediates steroid secretion in adrenocortical cells. PKA is an inactive heterotetramer, consisting of two catalytic and two regulatory subunits. Upon cAMP binding to the regulatory subunits, the catalytic subunits are released and are able to phosphorylate their target proteins. Recently, activating somatic mutations affecting the catalytic subunit a of PKA have been identified in a sub-population of cortisol-producing adenomas (CPAs) associated with overt CS. Interestingly, the PKA regulatory subunit IIb has long been known to have significantly lower protein levels in a sub-group of CPAs compared to other adrenocortical tumours. Yet, it is unknown, why these CPAs lack the regulatory subunit IIb, neither are any functional consequences nor are the underlying regulation mechanisms leading to reduced RIIb levels known. The results obtained in this thesis show a clear connection between Ca mutations and reduced RIIb protein levels in CPAs but not in other adrenocortical tumours. Furthermore, a specific pattern of PKA subunit expression in the different zones of the normal adrenal gland is demonstrated. In addition, a Ca L206R mutation-mediated degradation of RIIb was observed in adrenocortical cells in vitro. RIIb degradation was found to be mediated by caspases and by performing mutagenesis experiments of the regulatory subunits IIb and Ia, S114 phosphorylation of RIIb was identified to make RIIb susceptible for degradation. LC-MS/MS revealed RIIb interaction partners to differ in the presence of either Ca WT and Ca L206R. These newly identified interaction partners are possibly involved in targeting RIIb to subcellular compartments or bringing it into spatial proximity of degrading enzymes. Furthermore, reducing RIIb protein levels in an in vitro system were shown to correlate with increased cortisol secretion also in the absence of PRKACA mutations. The inhibiting role of RIIb in cortisol secretion demonstrates a new function of this regulatory PKA subunit, improving the understanding of the complex regulation of PKA as key regulator in many cells.}, subject = {Cushing-Syndrom}, language = {en} } @phdthesis{Thomas2021, author = {Thomas, Sarah Katharina}, title = {Design of novel IL-4 antagonists employing site-specific chemical and biosynthetic glycosylation}, doi = {10.25972/OPUS-17517}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-175172}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {The cytokines interleukin 4 (IL-4) and IL-13 are important mediators in the humoral immune response and play a crucial role in the pathogenesis of chronic inflammatory diseases, such as asthma, allergies, and atopic dermatitis. Hence, IL-4 and IL-13 are key targets for treatment of such atopic diseases. For cell signalling IL-4 can use two transmembrane receptor assemblies, the type I receptor consisting of receptors IL-4R and γc, and type II receptor consisting of receptors IL-4R and IL-13R1. The type II receptor is also the functional receptor of IL-13, receptor sharing being the molecular basis for the partially overlapping effects of IL-4 and IL-13. Since both cytokines require the IL-4R receptor for signal transduction, this allows the dual inhibition of both IL-4 and IL-13 by specifically blocking the receptor IL-4R. This study describes the design and synthesis of novel antagonistic variants of human IL-4. Chemical modification was used to target positions localized in IL-4 binding sites for γc and IL-13R1 but outside of the binding epitope for IL-4R. In contrast to existing studies, which used synthetic chemical compounds like polyethylene glycol for modification of IL-4, we employed glycan molecules as a natural alternative. Since glycosylation can improve important pharmacological parameters of protein therapeutics, such as immunogenicity and serum half-life, the introduced glycan molecules thus would not only confer a steric hindrance based inhibitory effect but simultaneously might improve the pharmacokinetic profile of the IL-4 antagonist. For chemical conjugation of glycan molecules, IL-4 variants containing additional cysteine residues were produced employing prokaryotic, as well as eukaryotic expression systems. The thiol-groups of the engineered cysteines thereby allow highly specific modification. Different strategies were developed enabling site-directed coupling of amine- or thiol- functionalized monosaccharides to introduced cysteine residues in IL-4. A linker-based coupling procedure and an approach requiring phenylselenyl bromide activation of IL-4 thiol-groups were hampered by several drawbacks, limiting their feasibility. Surprisingly, a third strategy, which involved refolding of IL-4 cysteine variants in the presence of thiol- glycans, readily allowed synthesis of IL-4 glycoconjugates in form of mixed disulphides in milligram amount. This approach, therefore, has the potential for large-scale synthesis of IL-4 antagonists with highly defined glycosylation. Obtaining a homogenous glycoconjugate with exactly defined glycan pattern would allow using the attached glycan structures for fine-tuning of pharmacokinetic properties of the IL-4 antagonist, such as absorption and metabolic stability. The IL-4 glycoconjugates generated in this work proved to be highly effective antagonists inhibiting IL-4 and/or IL-13 dependent responses in cell-based experiments and in in vitro binding studies. Glycoengineered IL-4 antagonists thus present valuable alternatives to IL-4 inhibitors used for treatment of atopic diseases such as the neutralizing anti-IL-4R antibody Dupilumab.}, subject = {Glykosylierung}, language = {en} } @phdthesis{Ruedenauer2021, author = {R{\"u}denauer, Fabian}, title = {Nutrition facts of pollen: nutritional quality and how it affects reception and perception in bees}, doi = {10.25972/OPUS-21254}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-212548}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {Nutrients belong to the key elements enabling life and influencing an organism's fitness. The intake of nutrients in the right amounts and ratios can increase fitness; strong deviations from the optimal intake target can decrease fitness. Hence, the ability to assess the nutritional profile of food would benefit animals. To achieve this, they need the according nutrient receptors, the ability to interpret the receptor information via perceptive mechanisms, and the ability to adjust their foraging behavior accordingly. Additionally, eventually existing correlations between the nutrient groups and single nutrient compounds in food could help them to achieve this adjustment. A prominent interaction between food and consumer is the interaction between flowering plants (angiosperms) and animal pollinators. Usually both of the interacting partners benefit from this mutualistic interaction. Plants are pollinated while pollinators get a (most of the times) nutritional reward in form of nectar and/or pollen. As similar interactions between plants and animals seem to have existed even before the emergence of angiosperms, these interactions between insects and angiosperms very likely have co-evolved right from their evolutionary origin. Therefore, insect pollinators with the ability to assess the nutritional profile may have shaped the nutritional profile of plant species depending on them for their reproduction via selection pressure. In Chapter I of this thesis the pollen nutritional profile of many plant species was analyzed in the context of their phylogeny and their dependence on insect pollinators. In addition, correlations between the nutrients were investigated. While the impact of phylogeny on the pollen protein content was little, the mutual outcome of both of the studies included in this chapter is that protein content of pollen is mostly influenced by the plant's dependence on insect pollinators. Several correlations found between nutrients within and between the nutrient groups could additionally help the pollinators to assess the nutrient profile of pollen. An important prerequisite for this assessment would be that the pollinators are able to differentiate between pollen of different plant species. Therefore, in Chapter II it was investigated whether bees have this ability. Specifically, it was investigated whether honeybees are able to differentiate between pollen of two different, but closely related plant species and whether bumblebees prefer one out of three pollen mixes, when they were fed with only one of them as larvae. Honeybees indeed were able to differentiate between the pollen species and bumblebees preferred one of the pollen mixes to the pollen mix they were fed as larvae, possibly due to its nutritional content. Therefore, the basis for pollen nutrient assessment is given in bees. However, there also was a slight preference for the pollen fed as larvae compared to another non-preferred pollen mix, at least hinting at the retention of larval memory in adult bumblebees. Chapter III looks into nutrient perception of bumblebees more in detail. Here it was shown that they are principally able to perceive amino acids and differentiate between them as well as different concentrations of the same amino acid. However, they do not seem to be able to assess the amino acid content in pollen or do not focus on it, but instead seem to focus on fatty acids, for which they could not only perceive concentration differences, but also were able to differentiate between. These findings were supported by feeding experiments in which the bumblebees did not prefer any of the pollen diets containing less or more amino acids but preferred pollen with less fatty acids. In no choice feeding experiments, bumblebees receiving a diet with high fatty acid content accepted undereating other nutrients instead of overeating fat, leading to increased mortality and the inability to reproduce. Hence, the importance of fat in pollen needs to be looked into further. In conclusion, this thesis shows that the co-evolution of flowering plants and pollinating insects could be even more pronounced than thought before. Insects do not only pressure the plants to produce high quality nectar, but also pressure those plants depending on insect pollination to produce high quality pollen. The reason could be the insects' ability to receive and perceive certain nutrients, which enables them to forage selectively leading to a higher reproductive success of plants with a pollinator-suitable nutritional pollen profile.}, subject = {Pollen}, language = {en} } @phdthesis{Krimmer2021, author = {Krimmer, Elena}, title = {Agri-environment schemes and ecosystem services: The influence of different sown flower field characteristics on pollination, natural pest control and crop yield}, doi = {10.25972/OPUS-20657}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-206577}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {Insects are responsible for the major part of the ecosystem services pollination and natural pest control. If insects decline, these ecosystem services can not longer be reliably delivered. Agricultural intensification and the subsequent loss and fragmentation of habitats has among others been identified to cause insect decline. Ecological intensification aims to promote alternative and sustainable management practices in agricultural farming, for example to decrease the use of external inputs such as pesticides. Agri-environment schemes make amends for farmers if they integrate ecologically beneficial measures into their farming regime and can therefore promote ecological intensification. There is a wide variety of agri-environment schemes, but the implementation of sown flower fields on crop fields is often included. Flower fields offer foraging resources as well as nesting sites for many different insect species and should be able to support insect populations as well as to increase ecosystem services to adjacent fields. However, the potential of flower fields to exhibit these effects is depending on many factors. Among others, the age and size of the flower field can influence if and how different insects profit from the measure. Additionally, the complexity of the surrounding landscape and therefore the existing biodiversity is influencing the potential of flower fields to increase ecosystem services locally. The goal of this study is to disentangle to which degree these factors influence the ecosystem services pollination and natural pest control and if these factors interact with each other. Furthermore, it will be examined if and how flower fields and ecosystem services influence crop yield. Additional factors examined in this study are distance decay and pesticide use. The abundance of beneficial insects can decrease strongly with increasing distance to suitable habitats. Pesticide use in turn could abrogate positive effects of flower fields on beneficial insects. To examine these different aspects and to be able to make recommendations for flower field implementation, field experiments were conducted on differently composed sown flower fields and adjacent oilseed rape fields. Flower fields differed in their age and continuity as well as in their size. Additionally, flower and oilseed rape fields were chosen in landscapes with different amounts of semi-natural habitat. Oilseed rape fields adjacent to calcareous grasslands and conventional crop fields served as controls. Pollinator observations and pollen beetle and parasitism surveys were conducted in the oilseed rape fields. Additionally, different yield parameters of the oilseed rape plants were recorded. Observations were conducted and samples taken in increasing distance to the flower fields to examine distance decay functions. Spray windows were established to inspect the influence of pesticides on ecosystem services and crop yields. Linear mixed models were used for statistical analysis. The results show, that newly established flower fields with high amounts of flower cover are very attractive for pollinators. If the flower fields reached a certain size (> 1.5ha), the pollinators tended to stay in these fields and did not distribute into the surroundings. High amounts of semi-natural habitat in the surrounding landscape increased the value of small flower fields as starting points for pollinators and their subsequent spillover into crop fields. Additionally, high amounts of semi-natural habitat decreased the decay of pollinators with increasing distance to the flower fields. Based on these results, it can be recommended to establish many small flower fields in landscapes with high amounts of semi-natural habitat and large flower fields in landscapes with low amounts of semi-natural habitat. However, it is mentionable that flower fields are no substitute for perennial semi-natural habitats. These still must be actively conserved to increase pollination to crop fields. Furthermore, the lowest amount of pollen beetle infestation was found on oilseed rape fields adjacent to continuous flower fields aged older than 6 years. Flower fields and calcareous grasslands in general increased pollen beetle parasitism in adjacent oilseed rape fields compared to conventional crop fields. The threshold for effective natural pest control could only be reached in the pesticide free areas in the oilseed rape fields adjacent to continuous flower fields and calcareous grasslands. Parasitism and superparasitism declined with increasing distance to the adjacent fields in pesticide treated areas of the oilseed rape fields. However, they remained on a similar level in spray windows without pesticides. Large flower fields increased parasitism and superparasitism more than small flower fields. Flower fields generally have the potential to increase pollen beetle parasitism rates, but pesticides can abrogate these positive effects of flower fields on natural pest control. Last but not least, effects of flower fields and ecosystem services on oilseed rape yield were examined. No positive effects of pollination on oilseed rape yield could be found. Old and continuous flower fields increased natural pest control in oilseed rape fields, which in turn increased seed set and total seed weight of oilseed rape plants. The pesticide treatment had negative effects on natural pest control, but positive effects on crop yield. Pollination and natural pest control decreased with increasing distance to the field edge, but fruit set slightly increased. The quality of the field in terms of soil and climatic conditions did not influence the yield parameters examined in this study. Yield formation in oilseed rape plants is a complex process with many factors involved, and it is difficult to disentangle indirect effects of flower fields on yield. However, perennial flower fields can promote ecological intensification by increasing crop yield via natural pest control. This study contributes to a better understanding of the effects of differently composed flower fields on pollination, natural pest control and oilseed rape yield.}, subject = {{\"O}kologie}, language = {en} } @phdthesis{RuedtvonCollenberg2021, author = {R{\"u}dt von Collenberg, Cora Freifrau}, title = {The role of Ciliary Neurotrophic Factor in hippocampal synaptic plasticity and learning}, doi = {10.25972/OPUS-20664}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-206646}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {Ciliary neurotrophic factor (Cntf) acts as a differentiation and survival factor for different types of neurons and glial cells. It is expressed by peripheral Schwann cells and astrocytes in the central nervous system and mediates its effects via a receptor complex involving CntfRα, LifRß and gp130, leading to downstream activation of Stat3. Recent studies by our group have shown that Cntf modulates neuronal microtubule dynamics via Stat3/stathmin interaction. In a mouse model for motor neuron disease, i.e. pmn, Cntf is able to rescue axonal degeneration through Stat3/stathmin signaling. While these findings suggest a role of Cntf in controlling axonal functions in the neuromuscular system, additional data indicate that Cntf might also play a role in synaptic plasticity in the hippocampus. Electrophysiological recordings in hippocampal organotypic cultures and acute slices revealed a deficit in long-term potentiation (LTP) in Cntf -/- mice. This deficit was rescued by 24 h stimulation with Cntf, combined with an acute application of Cntf during LTP-measurements indicating that Cntf is both necessary and sufficient for hippocampal LTP, and possibly synaptic plasticity. Therefore, Cntf knockout mice were investigated to elucidate this possible role of Cntf in hippocampal LTP and synaptic plasticity. First, we validated the presence of Cntf in the target tissue: in the hippocampus, Cntf was localized in Gfap-positive astrocytes surrounding small blood vessels in the fissure and in meningeal areas close to the dentate gyrus. Laser micro-dissection and qPCR analysis showed a similar distribution of Cntf-coding mRNA validating the obtained immunofluorescent results. Despite the strong LTP deficit in organotypic cultures, in vivo behavior of Cntf -/- mice regarding hippocampus-dependent learning and anxiety-related paradigms was largely inconspicuous. However, western blot analysis of hippocampal organotypic cultures revealed a significant reduction of pStat3 levels in Cntf -/- cultures under baseline conditions, which in turn were elevated upon Cntf stimulation. In order to resolve and examine synaptic structures we turned to in vitro analysis of cultured hippocampal neurons which indicated that pStat3 is predominantly located in the presynapse. In line with these findings, presynapses of Cntf -/- cultures were reduced in size and when in contact to astrocytes, contained less pStat3 immunoreactivity compared to presynapses in wildtype cultures. In conclusion, our findings hypothesize that despite of a largely inconspicuous behavioral phenotype of Cntf -/- mice, Cntf appears to have an influence on pStat3 levels at hippocampal synapses. In a next step these two key questions need to be addressed experimentally: 1) is there a compensatory mechanism by members of the Cntf family, possibly downstream of pStat3, which explains the in vivo behavioral results of Cntf -/- mice and can likewise account for the largely inconspicuous phenotype in CNTF-deficient humans? 2) How exactly does Cntf influence LTP through Stat3 signaling? To unravel the underlying mechanism further experiments should therefore investigate whether microtubule dynamics downstream of Stat3 and stathmin signaling are involved in the Cntf-induced modulation of hippocampal synaptic plasticity, similar to as it was shown in motoneurons.}, subject = {Hippocampus}, language = {en} } @phdthesis{Schuster2021, author = {Schuster, Sarah}, title = {Analysis of \(Trypanosoma\) \(brucei\) motility and the infection process in the tsetse fly vector}, doi = {10.25972/OPUS-19269}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-192691}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {African trypanosomes are protist pathogens that are infective for a wide spectrum of mammalian hosts. Motility has been shown to be essential for their survival and represents an important virulence factor. Trypanosoma brucei is transmitted by the bite of the bloodsucking tsetse fly, the only vector for these parasites. The voyage through the fly is complex and requires several migration, proliferation and differentiation steps, which take place in a defined order and in specific fly tissues. The first part of this doctoral thesis deals with the establishment of the trypanosome tsetse system as a new model for microswimmer analysis. There is an increasing interdisciplinary interest in microbial motility, but a lack of accessible model systems. Therefore, this work introduces the first enclosed in vivo host parasite system that is suitable for analysis of diverse microswimmer types in specific microenvironments. Several methods were used and adapted to gain unprecedented insights into trypanosome motion, the fly´s interior architecture and the physical interaction between host and parasite. This work provides a detailed overview on trypanosome motile behavior as a function of development in diverse host surroundings. In additional, the potential use of artificial environments is shown. This can be used to partly abstract the complex fly architecture and analyze trypanosome motion in defined nature inspired geometries. In the second part of the thesis, the infection of the tsetse fly is under investigation. Two different trypanosome forms exist in the blood: proliferative slender cells and cell cycle arrested stumpy cells. Previous literature states that stumpy cells are pre adapted to survive inside the fly, whereas slender cells die shortly after ingestion. However, infection experiments in our laboratory showed that slender cells were also potentially infective. During this work, infections were set up so as to minimize the possibility of stumpy cells being ingested, corroborating the observation that slender cells are able to infect flies. Using live cell microscopy and fluorescent reporter cell lines, a comparative analysis of the early development following infection with either slender or stumpy cells was performed. The experiments showed, for the first time, the survival of slender trypanosomes and their direct differentiation to the procyclic midgut stage, contradicting the current view in the field of research. Therefore, we can shift perspectives in trypanosome biology by proposing a revised life cycle model of T. brucei, where both bloodstream stages are infective for the vector.}, subject = {Motilit{\"a}t}, language = {en} } @phdthesis{Heiby2021, author = {Heiby, Julia}, title = {Insight into molecular mechanisms of folding and self-association of spider silk protein domains}, doi = {10.25972/OPUS-19345}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-193455}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {Spider silk is a biomaterial of extraordinary toughness paired with elasticity. The assembly of silk proteins, so-called spidroins (from "spider" and "fibroin"), generates the silk threads we typically see in our garden or the corners of our houses. Although spider webs from different species vary considerably in geometry and size, many sections of spidroin sequences are conserved. Highly conserved regions, found in all spidroins, relate to the terminal domains of the protein, i.e., the N-terminal (NTD) and C-terminal domains (CTD). Both have an essential function in the silk fibre association and polymerisation. The NTD is a 14 kDa five-helix bundle, which self-associates via a pH-driven mechanism. This process is critical for starting the polymerisation of the fibre. However, detailed insights into how conserved this mechanism is in different species and the quantitative thermodynamic comparison between homologous NTDs was missing. For this reason, four homologous NTDs of the major ampullate gland (MaSp) from spider species Euprosthenops australis, Nephila clavipes, Latrodectus hesperus, and Latrodectus geometricus were investigated. I analysed and quantified equilibrium thermodynamics, kinetics of folding, and self-association. Methods involved dynamic light scattering (MALS), stopped-flow fluorescence and circular dichroism spectroscopy in combination with thermal and chemical denaturation experiments. The results showed conserved, cooperative two-state folding on a sub-millisecond time scale. All homologous NTDs showed a similarly fast association in the order of 10^9 M^-1 s^-1, while the resulting equilibrium dissociation constants were in the low nanomolar range. Electrostatic forces were found to be of great importance for protein association. Monomeric protein stability increased with salt concentration while enhancing its folding speed. However, due to Debye-H{\"u}ckel effects, we found intermolecular electrostatics to be shielded, which reduced the NTDs association capacity significantly at high ionic strength. Altogether, the energetics and kinetics of the NTD dimerisation was conserved for all analysed homologs. Comparable to the NTD, the spider silks CTD is also a α-helix bundle, which covalently links two spidroins. The orientation of the domains predetermines the future fibre geometry. Here again, the detailed quantitative characterisation of the folding and dimerisation was missing. Therefore, the CTD from the E. australis was analysed in-depth. The protein folded via a three-state mechanism and was placed in the family of knotted proteins. By analysing the amino acid composition of the NTD of the MaSp1 of the Euprosthenops australis, we found an unusually high content of methionine residues (Met). To elucidate why this protein exhibits so many Met residues, I mutated all core Mets simultaneously to leucine (Leu). Results revealed a dramatically stabilised NTD, which now folded 50 times faster. After solving the tertiary structure of the mutant by NMR (nuclear magnetic resonance) spectroscopy, the structure of the monomeric mutant was found to be identical with the wild-type protein. However, when probing the dimerisation of the NTD, I could show that the association capacity was substantially impaired for the mutant. Our findings lead to the conclusion that Met provides the NTD with enhanced conformational dynamics and thus mobilises the protein, which results in tightly associated dimers. In additional experiments, I first re-introduced new Met residues into the Met-depleted protein at sequence positions containing native Leu. Hence, the mutated NTD protein was provided with the same number of Leu, which were previously removed by mutation. However, the protein did not regain wild-type characteristics. The functionality was not restored, but its stability was decreased as expected. To probe our hypothesis gained from the MaSp NTD, I transferred the experiment to another protein, namely the Hsp90 chaperone. Therefore, I incorporated methionine residues in the protein, which resulted in a slight improvement of its function. Finally, trial experiments were performed aiming at the synthesis of shortened spidroin constructs containing less repetitive middle-segments than the wild-type protein. The objective was to study the findings of the terminal domains in the context of an intact spidroin. The synthesis of these engineered spidroins was challenging. Nevertheless, preliminary results encourage the assumption that the characteristics observed in the isolated domains hold true in the context of a full-length spidroin.}, subject = {Spinnenseide}, language = {en} } @phdthesis{Markert2021, author = {Markert, Sebastian Matthias}, title = {Enriching the understanding of synaptic architecture from single synapses to networks with advanced imaging techniques}, doi = {10.25972/OPUS-18993}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-189935}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {Because of its complexity and intricacy, studying the nervous system is often challenging. Fortunately, the small nematode roundworm Caenorhabditis elegans is well established as a model system for basic neurobiological research. The C. elegans model is also the only organism with a supposedly complete connectome, an organism-wide map of synaptic connectivity resolved by electron microscopy, which provides some understanding of how the nervous system works as a whole. However, the number of available data-sets is small and the connectome contains errors and gaps. One example of this concerns electrical synapses. Electrical synapses are formed by gap junctions and difficult to map due to their often ambiguous morphology in electron micrographs, leading to misclassification or omission. On the other hand, chemical synapses are more easily mapped, but many aspects of their mode of operation remain elusive and their role in the C. elegans connectome is oversimplified. A comprehensive understanding of signal transduction of neurons between each other and other cells will be indispensable for a comprehensive understanding of the nervous system. In this thesis, I approach these challenges with a combination of advanced light and electron microscopy techniques. First, this thesis describes a strategy to increase synaptic specificity in connectomics. Specifically, I classify gap junctions with a high degree of confidence. To achieve this, I utilized array tomography (AT). In this thesis, AT is adapted for high-pressure freezing to optimize for structure preservation and for super-resolution light microscopy; in this manner, I aim to bridge the gap between light and electron microscopy resolutions. I call this adaptation super-resolution array tomography (srAT). The srAT approach made it possible to clearly identify and map gap junctions with high precision and accuracy. The results from this study showcased the feasibility of incorporating electrical synapses into connectomes in a systematic manner, and subsequent studies have used srAT for other models and questions. As mentioned above, the C. elegans connectomic model suffers from a shortage of datasets. For most larval stages, including the special dauer larval stage, connectome data is completely missing up to now. To obtain the first partial connectome data-set of the C. elegans dauer larva, we used focused ion-beam scanning electron microscopy (FIB-SEM). This technique offers an excellent axial resolution and is useful for acquiring large volumes for connectomics. Together with our collaborators, I acquired several data-sets which enable the analysis of dauer stage-specific "re-wiring" of the nervous system and thus offer valuable insights into connectome plasticity/variability. While chemical synapses are easy to map relative to electrical synapses, signal transduction via chemical transmitters requires a large number of different proteins and molecular processes acting in conjunction in a highly constricted space. Because of the small spatial scale of the synapse, investigating protein function requires very high resolution, which electron tomography provides. I analyzed electron tomograms of a worm-line with a mutant synaptic protein, the serine/threonine kinase SAD-1, and found remarkable alterations in several architectural features. My results confirm and re-contextualize previous findings and provide new insight into the functions of this protein at the chemical synapse. Finally, I investigated the effectiveness of our methods on "malfunctioning," synapses, using an amyotrophic lateral sclerosis (ALS) model. In the putative synaptopathy ALS, the mechanisms of motor neuron death are mostly unknown. However, mutations in the gene FUS (Fused in Sarcoma) are one known cause of the disease. The expression of the mutated human FUS in C. elegans was recently shown to produce an ALS-like phenotype in the worms, rendering C. elegans an attractive disease model for ALS. Together with our collaboration partners, I applied both srAT and electron tomography methods to "ALS worms" and found effects on vesicle docking. These findings help to explain electrophysiological recordings that revealed a decrease in frequency of mini excitatory synaptic currents, but not amplitudes, in ALS worms compared to controls. In addition, synaptic endosomes appeared larger and contained electron-dense filaments in our tomograms. These results substantiate the idea that mutated FUS impairs vesicle docking and also offer new insights into further molecular mechanisms of disease development in FUS-dependent ALS. Furthermore, we demonstrated the broader applicability of our methods by successfully using them on cultured mouse motor neurons. Overall, using the C. elegans model and a combination of light and electron microscopy methods, this thesis helps to elucidate the structure and function of neuronal synapses, towards the aim of obtaining a comprehensive model of the nervous system.}, subject = {Caenorhabditis elegans}, language = {en} } @phdthesis{BergmannBueno2021, author = {Bergmann Bueno, Amauri}, title = {Ecophysiological adaptations of cuticular water permeability of plants to hot arid biomes}, doi = {10.25972/OPUS-16783}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-167832}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {Arid environments cover almost one-third of the land over the world. Plant life in hot arid regions is prone to the water shortage and associated high temperatures. Drought-stressed plants close the stomata to reduce water loss. Under such conditions, the remaining water loss exclusively happens across the plant cuticle. The cuticular water permeability equals the minimum and inevitable water loss from the epidermal cells to the atmosphere under maximally stomatal closure. Thus, low cuticular water permeability is primordial for plant survival and viability under limited water source. The assumption that non-succulent xerophytes retard water loss due to the secretion of a heavier cuticle is often found in the literature. Intuitively, this seems to be plausible, but few studies have been conducted to evaluate the cuticular permeability of xerophilous plants. In chapter one, we investigated whether the cuticular permeability of Quercus coccifera L. grown in the aridest Mediterranean-subtype climate is indeed lower than that of individuals grown under temperate climate conditions. Also, the cuticular wax chemical compositions of plants grown in both habitats were qualitatively and quantitatively analysed by gas-chromatography. In few words, our findings showed that although the cuticular wax deposition increased in plants under Mediterranean climate, the cuticular permeability remained unaltered, regardless of habitat. The associated high temperatures in arid regions can drastically increase the cuticular water permeability. Thereby, the thermal stability of the cuticular transpirational barrier is decisive for safeguarding non-succulent xerophytes against desiccation. The successful adaptation of plants to hot deserts might be based on finding different solutions to cope with water and heat stresses. Water-saver plants close the stomata before the leaf water potential drastically changes in order to prevent damage, whereas water-spender plants reduce the leaf water potential by opening the stomata, which allow them to extract water from the deep soil to compensate the high water loss by stomatal transpiration. In chapter two, we compare the thermal stability of the cuticular transpiration barrier of the desert water-saver Phoenix dactylifera L. and the water-spender Citrullus colocynthis (L.) Schrad. In short, the temperature-dependent increase of the cuticular permeability of P. dactylifera was linear over the whole temperature range (25-50°C), while that of C. colocynthis was biphasic with a steep increase at temperatures ≥ 40°C. This drastic increase of cuticular permeability indicates a thermally induced breakdown of the C. colocynthis cuticular transpiration barrier, which does not occur in P. dactylifera. We further discussed how the specific chemical composition of the cutin and cuticular waxes might contribute to the pronounced thermal resistance of the P. dactylifera cuticular transpiration barrier. A multitude of morpho and physiological modifications, including photosynthetic thermal tolerance and traits related to water balance, led to the successful plant colonisation of hot arid regions over the globe. High evaporative demand and elevated temperatures very often go along together, thereby constraining the plant life in arid environments. In chapter 3, we surveyed cuticular permeability, leaf thermal tolerance, and cuticular wax chemical composition of 14 non-succulent plant species native from some of the hottest and driest biomes in South-America, Europe, and Asia. Our findings showed that xerophilous flowering plants present high variability for cuticular permeability and leaf thermal tolerance, but both physiological features could not be associated with the species original habitat. We also provide substantial evidence that non-succulent xerophytes with more efficient cuticular transpirational barrier have higher leaf thermal tolerance, which might indicate a potential coevolution of these features in hot arid biomes. We further discussed the efficiency of the cuticular transpiration barrier in function to the cuticular wax chemical composition in the general discussion section.}, subject = {Plant cuticle}, language = {en} } @phdthesis{Schoenwetter2021, author = {Sch{\"o}nwetter, Elisabeth Sofie}, title = {Towards an understanding of the intricate interaction network of TFIIH}, doi = {10.25972/OPUS-16892}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-168926}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {The integrity of its DNA is fundamental for every living cell. However, DNA is constantly threatened by exogenous and endogenous damaging agents that can cause a variety of different DNA lesions. The severe consequences of an accumulation of DNA lesions are reflected in cancerogenesis and aging. Several DNA repair mechanisms ensure the repair of DNA lesions and thus maintain DNA integrity. One of these DNA repair mechanisms is nucleotide excision repair (NER), which is famous for its ability to address a large variety of structurally unrelated DNA lesions. A key component of eukaryotic NER is the transcription factor II H (TFIIH) complex, which is not only essential for DNA repair but also for transcription. The TFIIH complex is composed of ten subunits. How these subunits work together during NER to unwind the DNA around the lesion is, however, not yet fully understood. High-resolution structural data and biochemical insights into the function of every subunit are thus indispensable to understand the functional networks within TFIIH. The importance of an intact TFIIH complex is reflected in the severe consequences of patient mutations in the TFIIH subunits XPB, XPD or p8 leading to the hallmark diseases xeroderma pigmentosum, Cockayne syndrome and trichothiodystrophy. Defects in the NER pathway are further associated with several types of cancer including skin cancer. The herein described work focused on five TFIIH subunits derived from the thermophilic fungus Chaetomium thermophilum, the p34/p44 pair and the ternary XPB/p52/p8 complex. The interaction between p34 and p44 was characterized based on a high-resolution structure of the p34_vWA/p44_RING minimal complex. Biochemical studies of the p34/p44 interaction led to the disclosure of an additional interaction between the p34 and p44 subunits, which had not been characterized so far. The p34/p44 interaction was shown to be central to TFIIH, which justifies the presence of several redundant interfaces to safeguard the interaction between the two proteins and might explain why so far, no patient mutations in these subunits have been identified. The p52 subunit of TFIIH was known to be crucial to stimulate the ATPase activity of XPB, which is required during NER. This work presents the first entire atomic resolution structural characterization of p52, which was derived of several crystal structures of p52 variants and a p52/p8 variant thereby demonstrating the interaction between p52 and p8. The precise structural model of p52 offered the possibility to investigate interactions with other TFIIH subunits in more detail. The middle domain 2 of p52 and the N-terminal domain of XPB were shown to mediate the main interaction between the two subunits. An analysis of the p52 crystal structures within recently published cryo-electron microscopy structures of TFIIH provides a model of how p52 and p8 stimulate the ATPase activity of XPB, which is essential for NER and transcription. The structural and biochemical findings of this work provide an additional building block towards the uncovering of the architecture and function of this essential transcription factor.}, subject = {DNS-Reparatur}, language = {en} } @phdthesis{Brosi2021, author = {Brosi, Cornelia}, title = {Functional characterization of the TTF complex and its role in neurodevelopmental disorders}, doi = {10.25972/OPUS-15778}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-157783}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {The eukaryotic gene expression requires extensive regulations to enable the homeostasis of the cell and to allow dynamic responses due to external stimuli. Although many regulatory mechanisms involve the transcription as the first step of the gene expression, intensive regulation occurs also in the post-transcriptional mRNA metabolism. Thereby, the particular composition of the mRNPs plays a central role as the components associated with the mRNA form a specific "mRNP code" which determines the fate of the mRNA. Many proteins which are involved in this regulation and the mRNA metabolism are affected in diseases and especially neurological disorders often result from an aberrant mRNP code which leads to changes in the regulation and expression of mRNPs. The focus of this work was on a trimeric protein complex which is termed TTF complex based on its subunits TDRD3, TOP3β and FMRP. Biochemical investigations revealed that the three components of the TTF complex are nucleo-cytosolic shuttle proteins which localize in the cytoplasm at the steady-state, associate with mRNPs and are presumably connected to the translation. Upon cellular stress conditions, the TTF components concentrate in stress granules. Thus, the TTF complex is part of the mRNP code, however its target RNAs and function are still completely unknown. Since the loss of functional FMRP results in the fragile X syndrome and TOP3β is associated with schizophrenia and intellectual disability, the TTF complex connects these phenotypically related neuro-psychiatric disorders with each other on a molecular level. Therefore, the aim of this work was to biochemically characterize the TTF complex and to define its function in the mRNA metabolism. In this work, evidence was provided that TDRD3 acts as the central unit of the TTF complex and directly binds to FMRP as well as to TOP3β. Thereby, the interaction of TDRD3 and TOP3β is very stable, whereas FMRP is a dynamic component. Interestingly, the TTF complex is not bound directly to mRNA, but is recruited via the exon junction complex (EJC) to mRNPs. This interaction is mediated by a specific binding motif of TDRD3, the EBM. Upon biochemical and biological investigations, it was possible to identify the interactome of the TTF complex and to define the role in the mRNA metabolism. The data revealed that the TTF complex is mainly associated with "early" mRNPs and is probably involved in the pioneer round of translation. Furthermore, TOP3β was found to bind directly to the ribosome and thus, establishes a connection between the EJC and the translation machinery. A reduction of the TTF components resulted in selective changes in the proteome in cultured cells, whereby individual protein subsets seem to be regulated rather than the global protein expression. Moreover, the enzymatic analysis of TOP3β indicated that TOP3β is a type IA topoisomerase which can catalytically attack not only DNA but also RNA. This aspect is particularly interesting with regard to the connection between early mRNPs and the translation which has been revealed in this work. The data obtained in this work suggest that the TTF complex plays a role in regulating the metabolism of an early mRNP subset possibly in the course of the pioneer round of translation. Until now, the link between an RNA topoisomerase and the mRNA metabolism is thereby unique and thus provides a completely new perspective on the steps in the post-transcriptional gene expression and its regulation.}, subject = {Messenger-RNP}, language = {en} } @phdthesis{Auer2021, author = {Auer, Daniela}, title = {Impact of the chlamydial deubiquitinase ChlaDUB1 on host cell defense}, doi = {10.25972/OPUS-17846}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-178462}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {The human pathogen Chlamydia trachomatis is the main cause of sexually transmitted infections worldwide. The obligate intracellular bacteria are the causative agent of several diseases that reach from conjunctivitis causing trachoma and blindness as well as salpingitis and urethritis which can lead to infertility if left untreated. In order to gain genetically engineered Chlamydia that inducible knock down specific gene expression, the CRISPRi system was established in C. trachomatis. In a proof of principle experiment it was shown that C. trachomatis pCRISPRi:gCdu1III target ChlaDUB1 expression and reduce the protein amount up to 50 \%. Knock-down of the DUB did not influence protein levels of anti-apoptotic Mcl-1 and did not make cells susceptible for apoptosis. However, reduced dCas9 protein size, bacterial growth impairment and off target effects interfering with the GFP signal, form obstacles in CRISPRi system in Chlamydia. For routinely use of the CRISPRi method in C. trachomatis further investigation is needed. Since the bacterial life cycle includes two morphological and functional distinct forms, it is essential for chlamydial spread to complete the development cycle and form infectious progeny. Therefore, Chlamydia has evolved strategies to evade the host immune system in order to stay undetected throughout the developmental cycle. The bacteria prevent host cell apoptosis via stabilization of anti-apoptotic proteins like Mcl-1, Survivin and HIF-1α and activate pro-survival pathways, inhibiting invasion of immune cells to the site of infection. The host cell itself can destroy intruders via cell specific defense systems that involve autophagy and recruitment of professional immune cells. In this thesis the role of the chlamydial deubiuqitinase ChlaDUB1 upon immune evasion was elucidated. With the mutant strain Ctr Tn-cdu1 that encodes for a truncated DUB due to transposon insertion, it was possible to identify ChlaDUB1 as a potent opponent of the autophagic system. Mutant inclusions were targeted by K48 and K63 chain ubiquitination. Subsequently the inclusion was recognized by autophagic receptors like p62, NBR1 and NDP52 that was reversed again by complementation with the active DUB. Xenophagy was promoted so far as LC3 positive phagosomes formed around the inclusion of Ctr Tn-cdu1, which did not fuse with the lysosome. The detected growth defect in human primary cells of Chlamydia missing the active DUB was not traced back to autophagy, but was due to impaired development and replication. It was possible to identify Ankib1, the E3 ligase, that ubiquitinates the chlamydial inclusion in a siRNA based screen. The activating enzyme Ube1 and the conjugating enzyme Ube2L3 are also essential in this process. Chlamydia have a reduced genome and depend on lipids and nutrients that are translocated from the host cell to the inclusion to proliferate. Recruitment of fragmented Golgi stacks to the inclusion surface was prevented when ChlaDUB1 was inactive, probably causing diminished bacterial growth. Additionally, the modification of the inclusion by Ankib1 and subsequent decoration by autophagic markers was not only present in human but also murine cells. Comparison of other Chlamydia strains and species revealed Ankib1 to be located at the proximity of the inclusion in C. trachomatis strains only but not in C. muridarum or C. pneumoniae, indicating that Ankib1 is specifically the E3 ligase of C. trachomatis. Moreover, the role of ChlaDUB1 in infected tissue was of interest, since ChlaDUB1 protein was also found in early EB stage and so might get in contact with invading immune cells after cell lysis. While bacteria spread and infect new host cells, Chlamydia can also infect immune cells. Infection of human neutrophils with Ctr Tn-cdu1 shows less bacterial survival and affirms the importance of the DUB for bacterial fitness in these cells.}, subject = {Chlamydia}, language = {en} } @phdthesis{KimbadiLombe2021, author = {Kimbadi Lombe, Blaise}, title = {Novel-Type Dimeric Naphthylisoquinoline Alkaloids from Congolese Ancistrocladus Lianas: Isolation, Structural Elucidation, and Antiprotozoal and Anti-Tumoral Activities}, doi = {10.25972/OPUS-19178}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-191789}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {Herein described is the discovery of three novel types of dimeric naphthylisoquinoline alkaloids, named mbandakamines, cyclombandakamines, and spirombandakamines. They were found in the leaves of a botanically as yet unidentified, potentially new Ancistrocladus species, collected in the rainforest of the Democratic Republic of the Congo (DRC). Mbandakamines showed an exceptional 6′,1′′-coupling, in the peri-position neighboring one of the outer axes, leading to an extremely high steric hindrance at the central axis, and to U-turn-like molecular shape, which - different from all other dimeric NIQs, whose basic structures are all quite linear - brings three of the four bicyclic ring systems in close proximity to each other. This created an unprecedented follow-up chemistry, involving ring closure reactions, leading to two further, structurally even more intriguing subclasses, the cyclo- and the spirombandakamines, displaying eight stereogenic elements (the highest total number ever found in naphthylisoquinoline alkaloids). The metabolites exhibited pronounced antiplasmodial and antitrypanosomal activities. Likewise reported in this doctoral thesis are the isolation and structural elucidation of naphthylisoquinoline alkaloids from two further potentially new Ancistrocladus species from DRC. Some of these metabolites have shown pronounced antiausterity activities against human pancreatic cancer PANC-1 cells.}, subject = {Naphthylisochinolinalkaloide}, language = {en} } @phdthesis{Spieler2021, author = {Spieler, Valerie}, title = {Bioinspired drug delivery of interleukin-4}, doi = {10.25972/OPUS-19359}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-193590}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {Chronic inflammatory diseases such as rheumatoid arthritis, type 2 diabetes and cardiovascular diseases, are associated with the homeostatic imbalance of one of several physiological systems combined with the lack of spontaneous remission, which causes the disease to persevere throughout patients' lives. The inflammatory response relies mainly on tissue-resident, pro-inflammatory M1 type macrophages and, consequently, a chance for therapeutic intervention lies in driving macrophage polarization towards the anti-inflammatory M2 phenotype. Therefore, anti-inflammatory cytokines that promote M2 polarization, including interleukin-4 (IL4), have promising therapeutic potential. Unfortunately, their systemic use is hampered by a short serum half-life and dose-limiting toxicity. On the way towards cytokine therapies with superior safety and efficacy, this thesis is focused on designing bioresponsive delivery systems for the anti-inflammatory cytokine IL4. Chapter 1 describes how anti-inflammatory cytokines are tightly regulated in chronic, systemic inflammation as in rheumatoid arthritis but also in acute, local inflammation as in myocardial infarction. Both diseases show a characteristic progression during which anti-inflammatory cytokine delivery is of variable benefit. A conventional, passive drug delivery system is unlikely to release the cytokines such that the delivery matches the dynamic course of the (patho-)physiological progress. This chapter presents a blueprint for active drug delivery systems equipped with a 24/7 inflammation detector that continuously senses for matrix metalloproteinases (MMP) as surrogate markers of the disease progress and responds by releasing cytokines into the affected tissues at the right time and place. Because they are silent during phases of low disease activity, bioresponsive depots could be used to treat patients in asymptomatic states, as a preventive measure. The drug delivery system only gets activated during flares of inflammation, which are then immediately suppressed by the released cytokine drug and could prevent the steady damage of subclinical chronic inflammation, and therefore reduce hospitalization rates. In a first proof of concept study on controlled cytokine delivery (chapter 2), we developed IL4-decorated particles aiming at sustained and localized cytokine activity. Genetic code expansion was deployed to generate muteins with the IL4's lysine 42 replaced by two different unnatural amino acids bearing a side chain suitable for click chemistry modification. The new IL4 muteins were thoroughly characterized to ensure proper folding and full bioactivity. Both muteins showed cell-stimulating ability and binding affinity to IL4 receptor alpha similar to those of wild type IL4. Copper-catalyzed (CuAAC) and strain-promoted (SPAAC) azide-alkyne cycloadditions were used to site-selectively anchor IL4 to agarose particles. These particles had sustained IL4 activity, as demonstrated by the induction of TF-1 cell proliferation and anti-inflammatory M2 polarization of M-CSF-generated human macrophages. This approach of site-directed IL4 anchoring on particles demonstrates that cytokine-functionalized particles can provide sustained and spatially controlled immune-modulating stimuli. The idea of a 24/7 sensing, MMP driven cytokine delivery system, as described in the introductory chapter, was applied in chapter 3. There, we simulated the natural process of cytokine storage in the extracellular matrix (ECM) by using an injectable solution of IL4 for depot formation by enzyme-catalyzed covalent attachment to ECM components such as fibronectin. The immobilized construct is meant to be cleaved from the ECM by matrix-metalloproteinases (MMPs) which are upregulated during flares of inflammation. These two functionalities are facilitated by a peptide containing two sequences: a protease-sensitive peptide linker (PSL) for MMP cleavage and a sequence for covalent attachment by activated human transglutaminase FXIIIa (TGase) included in the injection mix for co-administration. This peptide was site-selectively conjugated to the unnatural amino acid at IL4 position 42 allowing to preserve wild type bioactivity of IL4. In vitro experiments confirmed the anticipated MMP response towards the PSL and TGase-mediated construct attachment to fibronectin of the ECM. Furthermore, the IL4-peptide conjugates were able to reduce inflammation and protect non-load bearing cartilage along with the anterior cruciate ligament from degradation in an osteoarthritis model in rabbits. This represents the first step towards a minimally invasive treatment option using bioresponsive cytokine depots with potential clinical value for inflammatory conditions. One of the challenges with this approach was the production of the cytokine conjugate, with incorporation of the unnatural amino acid into IL4 being the main bottleneck. Therefore, in chapter 4, we designed a simplified version of this depot system by genetically fusing the bifunctional peptide via a flexible peptide spacer to murine IL4. While human IL4 loses its activity upon C-terminal elongation, murine IL4 is not affected by this modification. The produced murine IL4 fusion protein could be effectively bound to in vitro grown extracellular matrix in presence of TGase. Moreover, the protease-sensitive linker was selectively recognized and cleaved by MMPs, liberating intact and active IL4, although at a slower rate than expected. Murine IL4 offers the advantage to evaluate the bioresponsive cytokine depot in many available mouse models, which was so far not possible with human IL4 due to species selectivity. For murine IL4, the approach was further extended to systemic delivery in chapter 5. To increase the half-life and specifically target disease sites, we engineered a murine IL4 variant conjugated with a folate-bearing PEG chain for targeting of activated macrophages. The bioactive IL4 conjugate had a high serum stability and the PEGylation increased the half-life to 4 h in vivo. Surprisingly, the folate moiety did not improve targeting in an antigen-induced arthritis (AIA) mouse model. IL4-PEG performed better in targeting the inflamed joint, while IL4-PEG-folate showed stronger accumulation in the liver. Fortunately, the modular nature of the IL4 conjugate facilitates convenient adaption of PEG chain length and the targeting moiety to further improve the half-life and localization of the cytokine. In summary, this thesis describes a platform technology for the controlled release of cytokines in response to inflammation. By restricting the release of the therapeutic to the site of inflammation, the benefit-risk ratio of this potent class of biologics can be positively influenced. Future research will help to deepen our understanding of how to perfectly combine cytokine, protease-sensitive linker and immobilization tag or targeting moiety to tackle different diseases.}, subject = {Targeted drug delivery}, language = {en} } @phdthesis{daCruzGueerisoli2021, author = {da Cruz G{\"u}erisoli, Irene Maria}, title = {Investigating the murine meiotic telomere complex TERB1-TERB2-MAJIN: spatial organization and evolutionary history}, doi = {10.25972/OPUS-21056}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-210562}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {Einess der faszinierenden Merkmale der meiotischen Prophase I sind die hochkonservierten kr{\"a}ftigen Bewegungen homologer Chromosomen. Diese Bewegungen sind entscheidend f{\"u}r den Erfolg von Schl{\"u}sselereignissen wie die Ausrichtung, Paarung und Rekombination der homologen Chromosomen. Mehrere bisher untersuchte Organismen, darunter S{\"a}ugetiere, W{\"u}rmer, Hefen und Pflanzen, erreichen diese Bewegungen, indem sie die Chromosomenenden an spezialisierten Stellen in der Kernh{\"u}lle verankern. Diese Verankerung erfordert Telomer-Adapterproteine, die bisher in der Spalthefe und der Maus identifiziert wurden. Die meiosespezifischen Telomer-Adapterproteine der Maus, TERB1, TERB2 und MAJIN, sind an der Verankerung des ubiquit{\"a}ren Telomer-Shelterin-protein an den LINC-Komplex beteiligt, mit einem analogen Mechanismus, wie er die Spalthefe beschrieben wird. Obgleich die meiose-spezifischen TelomerAdapterproteine eine wesentliche Rolle spielen, ist der genaue Mechanismus der Verankerung der Telomere an die Kernh{\"u}lle sowie ihre evolution{\"a}re Geschichte bisher noch wenig verstanden. Das Hauptziel dieser Arbeit ist daher die Untersuchung der Organisation des meiosespezifischen TelomerAdapterkomplexes TERB1-TERB2-MAJIN der Maus und dessen Evolutionsgeschichte. Im ersten Teil dieser Arbeit wurde die Organisation des TERB1-TERB2-MAJIN Komplexes mittels hochaufl{\"o}sender Mikroskopie (SIM), an Mausspermatozyten untersucht, sowie die Lokalisation in Bezug auf TRF1 des Telomer-ShelterinKomplexes und die telomerische DNA analysiert. In den Stadien Zygot{\"a}n und Pachyt{\"a}n zeigten die Fluoreszenzsignale eine starke {\"U}berlappung der Verteilung der meiotischen Telomer-Komplex-Proteine, wobei die Organisation von TERB2 an den Chromosomenenden heterogener war als die von TERB1 und MAJIN. Außerdem konnte die TRF1-Lokalisation an den Enden der Lateralelemente (LEs) mit einer griffartigen Anordnung um die TERB1- und MAJIN-Signale im Zygot{\"a}n- und Pachyt{\"a}n-Stadium gezeigt werden. Interessanterweise erwies sich die telomerische DNA als lateral verteilt und teilweise {\"u}berlappend mit der zentralen Verteilung der meiotischen Telomer-Komplex-Proteine an den Enden der LEs. Die Kombination dieser Ergebnisse erlaubte die Beschreibung eines alternativen Modells der Verankerung der Telomer an die Kernh{\"u}lle w{\"a}hrend der meiotischen Prophase I. Der zweite Teil dieser Arbeit analysiert die Evolutionsgeschichte der Mausproteine von TERB1, TERB2 und MAJIN. Die fehlende {\"U}bereinstimmung zwischen den Meiose-spezifische Telomer-Adapteproteinen der Maus und der Spalthefe hat die Frage nach dem evolutionsbedingten Ursprung dieses spezifischen Komplexes aufgeworfen. Um vermeintliche Orthologen der Mausproteinevon TERB1, TERB2 und MAJIN {\"u}ber Metazoen hinweg zu identifizieren, wurden computergest{\"u}tzte Verfahren und phylogenetische Analysen durchgef{\"u}hrt. Dar{\"u}ber hinaus wurden Expressionsstudien implementiert, um ihre potenzielle Funktion w{\"a}hrend der Meiose zu testen. Die Analysen haben ergeben, dass der Meiose-spezifische Telomer-Komplex der Maus sehr alt ist, da er bereits in den Eumetazoen entstand, was auf einen einzigen Ursprung hindeutet. Das Fehlen jeglicher Homologen des meiosespezifischen Telomerkomplexes in Nematoden und die einigen wenigen in Arthropoden nachgewiesenen Kandidaten, deuten darauf hin, dass die Telomer-Adapterproteine in diesen Abstammungslinien verloren/ersetzt oder stark diversifiziert worden sind. Bemerkenswerterweise zeigten Proteindom{\"a}nen von TERB1, TERB2 und MAJIN, die an der Bildung des Komplexes sowie an der Interaktion mit dem Telomer-Shelterin-Protein und den LINC-Komplexen beteiligt sind, eine hohe Sequenz{\"a}hnlichkeit {\"u}ber alle Kladen hinweg. Abschließend lieferte die Genexpression im Nesseltier Hydra vulgaris den Beweis, dass der TERB1-TERB2-MAJIN-Komplex selektiv in der Keimbahn exprimiert wird, was auf die Konservierung meiotischer Funktionen {\"u}ber die gesamte Metazoen-Evolution hinweg hindeutet. Zusammenfassend bietet diese Arbeit bedeutende neue Erkenntnisse hinsichtlich des Meiose-spezifischen Telomer-Adapterkomplex, seines Mechanismus zur Verankerung der Telomer an die Kernh{\"u}lle und die Entschl{\"u}sselung seines Ursprungs in den Metazoen.}, language = {en} } @phdthesis{MezaChincha2021, author = {Meza Chincha, Ana Lucia}, title = {Catalytic Water Oxidation with Functionalized Ruthenium Macrocycles}, doi = {10.25972/OPUS-20962}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-209620}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {In light of the rapidly increasing global demand of energy and the negative effects of climate change, innovative solutions that allow an efficient transition to a carbon-neutral economy are urgently needed. In this context, artificial photosynthesis is emerging as a promising technology to enable the storage of the fluctuating energy of sunlight in chemical bonds of transportable "solar fuels". Thus, in recent years much efforts have been devoted to the development of robust water oxidation catalysts (WOCs) leading to the discovery of the highly reactive Ru(bda) (bda: 2,2'-bipyridine-6,6'-dicarboxylic acid) catalyst family. The aim of this thesis was the study of chemical and photocatalytic water oxidation with functionalized Ruthenium macrocycles to explore the impact of substituents on molecular properties and catalytic activities of trinuclear macrocyclic Ru(bda) catalysts. A further objective of this thesis comprises the elucidation of factors that influence the light-driven water oxidation process with this novel class of supramolecular WOCs.}, subject = {Rutheniumkomplexe}, language = {en} } @phdthesis{Hock2021, author = {Hock, Andreas}, title = {NHC-stabilized Alanes and Gallanes}, doi = {10.25972/OPUS-21252}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-212525}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {This thesis describes the synthesis and reactivity of NHC-stabilized Lewis-acid/Lewis-base adducts of alanes and gallanes (NHC = Me2ImMe, iPr2Im, iPr2ImMe, Dipp2Im, Dipp2ImH). As this field of research has developed tremendously, especially in the last five years, the first chapter provides an overview of the current state of knowledge. The influence of electronegative π-donor-substituents on the stability of the NHC alane adducts is examined in chapter 2. For this purpose, the carbene stabilized alanes (NHC)∙AlH3 (NHC = iPr2Im, Dipp2Im) were reacted with secondary amines of different steric demand and with phenols. The π-donor substituents saturate the Lewis acidic aluminium center and coordination of a second NHC-ligand was not observed. The strongly electronegative N and O substituents increase the Lewis acidity of the aluminium atom, which leads to stronger Al-CNHC as well as Al-H bonds, which inhibits the insertion of the carbene into the Al-H bond. In Chapter 3 the development of the synthesis and reactivity of carbene-stabilized gallanes is presented. The synthesis of NHC gallane adducts (NHC)∙GaH3, (NHC)∙GaH2Cl and (NHC)∙GaHCl2 and their reactivity towards NHCs and cAACMe were investigated in detail. The reaction of the mono- and dichlorogallanes (NHC)∙GaH2Cl and (NHC)∙GaHCl2 (NHC = iPr2ImMe, Dipp2Im) with cAACMe led to insertion of the cAACMe with formation of chiral and achiral compounds depending on the sterically demand of the used NHC. Furthermore, the formation of bis-alkylgallanes was observed for the insertion of two equivalents of cAACMe with release of the NHC ligand. Chapter 4 describes investigations concerning the synthesis and reactivity of NHC-stabilized iodoalanes and iodogallanes, which are suitable for the formation of cationic aluminium and gallium dihydrides. The reaction of (NHC)∙EH2I (E = Al, Ga) stabilized by the sterically less demanding NHCs (NHC = Me2ImMe, iPr2Im, iPr2ImMe) with an additional equivalent of the NHC led to the formation of the cationic bis-NHC aluminium and gallium dihydrides [(NHC)2∙AlH2]+I- and [(NHC)2∙GaH2]+I-. Furthermore, the influence of the steric demand of the used NHC was investigated. The adduct (Dipp2Im)∙GaH2I was reacted with an additional equivalent of Dipp2Im. Due to the bulk of the NHC used, rearrangement of one of the NHC ligands from normal to abnormal coordination occurred and the cationic gallium dihydride [(Dipp2Im)∙GaH2(aDipp2Im)] was isolated. Chapter 5 of this thesis reports investigations concerning the reduction of cyclopentadienyl-substituted alanes and gallanes with singlet carbenes. NHC stabilized pentamethylcyclopentadienyl aluminium and gallium dihydrides (NHC)∙Cp*MH2 (E = Al, Ga) were prepared by the reaction of (AlH2Cp*)3 with the corresponding NHCs or by the salt elimination of (NHC)∙GaH2I with KCp*. The gallane adducts decompose at higher temperatures with reductive elimination of Cp*H and formation of Cp*GaI. . The reductive elimination is preferred for sterically demanding NHCs (Dipp2Im > iPr2ImMe > Me2ImMe). In addition, NHC ring expansion of the backbone saturated carbene Dipp2ImH was observed for the reaction of the NHC with (AlH2Cp*)3, which led to (RER-Dipp2ImHH2)AlCp*. Furthermore, the reactivity of the adducts (NHC)∙Cp*EH2 (E = Al, Ga) towards cAACMe was investigated. The reaction of the alane adducts stabilized by the sterically more demanding NHCs iPr2ImMe and Dipp2Im afforded the exceptionally stable insertion product (cAACMeH)Cp*AlH V-10 with liberation of the NHC. The reaction of the gallium hydrides (NHC)∙Cp*GaH2 with cAACMe led to the reductive elimination of cAACMeH2 and formation of Cp*GaI. A variety of neutral and cationic carbene-stabilized alanes and gallanes are presented in this work. The introduction of electronegative π-donor substituents (Cl-, I-, OR-, NR2-) and the investigations on the thermal stability of these compounds led to the conclusion that the stability of alanes and gallanes increased significantly by such a substitution. Investigations on the reactivity of the NHC adducts towards cAACMe resulted in various insertion products of the carbene into the Al-H or Ga-H bonds and the first cAACMe stabilized dichlorogallane was isolated. Furthermore, a first proof was provided that carbenes can be used specifically for the (formal) reduction of group 13 hydrides of the higher homologues. Thus, the synthesis of Cp*GaI from the reaction of (NHC)∙Cp*GaH2 with cAACMe was developed. In the future, this reaction pathway could be of interest for the preparation of other low-valent compounds of aluminium and gallium.}, subject = {Aluminiumhydridderivate}, language = {en} } @phdthesis{PeethambaranNairSyamala2021, author = {Peethambaran Nair Syamala, Pradeep}, title = {Bolaamphiphilic Rylene Bisimides: Thermodynamics of Self-assembly and Stimuli-responsive Properties in Water}, doi = {10.25972/OPUS-21342}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-213424}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {The present thesis demonstrates how different thermodynamic aspects of self-assembly and stimuli-responsive properties in water can be encoded on the structure of π-amphiphiles, consisting of perylene or naphthalene bisimide cores. Initially, quantitative thermodynamic insights into the entropically-driven self-assembly was studied for a series of naphthalene bisimides with UV/Vis and ITC measurements, which demonstrated that their thermodynamic profile of aggregation is heavily influenced by the OEG side chains. Subsequently, a control over the bifurcated thermal response of entropically driven and commonly observed enthalpically driven self-assembly was achieved by the modulation of glycol chain orientation. Finally, Lower Critical Solution Temperature (LCST) phenomenon observed for these dyes was investigated as a precise control of this behavior is quintessential for self-assembly studies as well as to generate 'smart' materials. It could be shown that the onset of phase separation for these molecules can be encoded in their imide substituents, and they are primarily determined by the supramolecular packing, rather than the hydrophobicity of individual monomers.}, subject = {Supramolekulare Chemie}, language = {en} } @phdthesis{Wehner2021, author = {Wehner, Marius}, title = {Supramolecular Polymorphism in Homo- and Heterochiral Supramolecular Polymerizations}, doi = {10.25972/OPUS-21151}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-211519}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {The aim of the first part of this thesis was to investigate (R,R)-PBI as a model system for polymorphism at its origin by a supramolecular approach. The pathway complexity of (R,R)-PBI was fine-tuned by experimental parameters such as solvent, temperature and concentration to make several supramolecular polymorphs accessible. Mechanistic and quantum chemical studies on the kinetics and thermodynamics of the supramolecular polymerization of (R,R)-PBI were conducted to shed light on the initial stages of polymorphism. The second part of this work deals with mechanistic investigations on the supramolecular polymerization of the racemic mixture of (R,R)- and (S,S)-PBI with regard to homochiral and heterochiral aggregation leading to conglomerates and a racemic supramolecular polymer, respectively.}, subject = {Supramolekulare Chemie}, language = {en} } @phdthesis{Tylek2021, author = {Tylek, Tina}, title = {Establishment of a Co-culture System of human Macrophages and hMSCs to Evaluate the Immunomodulatory Properties of Biomaterials}, doi = {10.25972/OPUS-20357}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-203570}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {The outcome of the innate immune response to biomaterials mainly determines whether the material will be incorporated in the body to fulfill its desired function or, when it gets encapsulated, will be rejected in the worst case. Macrophages are key players in this process, and their polarization state with either pro- (M1), anti-inflammatory (M2), or intermediate characteristics is crucial for deciding on the biomaterial's fate. While a transient initial pro-inflammatory state is helpful, a prolonged inflammation deteriorates the proper healing and subsequent regeneration. Therefore, biomaterial-based polarization may aid in driving macrophages in the desired direction. However, the in vivo process is highly complex, and a mono-culture of macrophages in vitro displays only one part of the cellular system, but, to this date, there is a lack of established co-cultures to assess the immune response to biomaterials. Thus, this thesis aimed to establish a functional co-culture system of human macrophages and human mesenchymal stromal cells (hMSCs) to improve the assessment of the immune response to biomaterials in vitro. Together with macrophages, hMSCs are involved in tissue regeneration and inflammatory reactions and can modulate the immune response. In particular, endogenously derived hMSCs considerably contribute to the successful engrafting of biomaterials. This thesis focused on poly(ε-caprolactone) (PCL) fiber-based scaffolds produced by the technique of melt electrowriting (MEW) as biomaterial constructs. Via this fabrication technique, uniform, precisely ordered scaffolds varying in geometry and pore size have been created in-house. To determine the impact of scaffold geometries and pore sizes on macrophages, mono-cultures incubated on scaffolds were conducted. As a pre-requisite to achieve a functional co-culture system on scaffolds, setups for direct and indirect systems in 2D have initially been established. These setups were analyzed for the capability of cell-cell communication. In parallel, a co-culture medium suitable for both cell types was defined, prior to the establishment of a step-by-step procedure for the co-cultivation of human macrophages and hMSCs on fiber-based scaffolds. Regarding the scaffold morphologies tested within this thesis to improve M2-like polarization, box-shaped scaffolds outperformed triangular-, round- or disordered-shaped ones. Upon further investigation of scaffolds with box-shaped pores and precise inter-fiber spacing from 100 µm down to only 40 µm, decreasing pore sizes facilitated primary human macrophage elongation accompanied by their differentiation towards the M2 type, which was most pronounced for the smallest pore size of 40 µm. To the best of my knowledge, this was the first time that the elongation of human macrophages in a 3D environment has been correlated to their M2-like polarization. Thus, these results may set the stage for the design, the assessment, and the selection of new biomaterials, which can positively affect the tissue regeneration. The cell communication of both cell types, detected via mitochondria exchange in direct and indirect co-cultures systems, took place in both directions, i.e., from hMSCs to macrophages and vice versa. Thereby, in direct co-culture, tunneling nanotubes enabled the transfer from one cell type to the respective other, while in indirect co-culture, a non-directional transfer through extracellular vesicles (EVs) released into the medium seemed likely. Moreover, the phagocytic activity of macrophages after 2D co-cultivation and hence immunomodulation by hMSCs increased with the highest phagocytic rate after 48 h being most pronounced in direct co-cultivation. As the commonly used serum supplements for macrophages and hMSCs, i.e., human serum (hS) and fetal calf serum (FCS), respectively, failed to support the respective other cell type during prolonged cultivation, these sera were replaced by human platelet lysate (hPL), which has been proven to be the optimal supplement for the co-cultivation of human macrophages with hMSCs within this thesis. Thereby, the phenotype of both cell types, the distribution of both cell populations, the phagocytic activity of macrophages, and the gene expression profiles were maintained and comparable to the respective standard mono-culture conditions. This was even true when hPL was applied without the anticoagulant heparin in all cultures with macrophages, and therefore, heparin was omitted for further experiments comprising hPL and macrophages. Accordingly, a step-by-step operating procedure for the co-cultivation on fiber-based scaffolds has been established comprising the setup for 3D cultivation as well as the description of methods for the analysis of phenotypical and molecular changes upon contact with the biomaterial. The evaluation of the macrophage response depending on the cultivation with or without hMSCs and either on scaffolds or on plastic surfaces has been successfully achieved and confirmed the functionality of the suggested procedures. In conclusion, the functional co-culture system of human macrophages and hMSCs established here can now be employed to assess biomaterials in terms of the immune response in a more in vivo-related way. Moreover, specifically designed scaffolds used within the present thesis showed auspicious design criteria positively influencing the macrophage polarization towards the anti-inflammatory, pro-healing type and might be adaptable to other biomaterials in future approaches. Hence, follow-up experiments should focus on the evaluation of the co-culture outcome on promising scaffolds, and the suggested operating procedures should be adjusted to further kinds of biomaterials, such as cements or hydrogels.}, subject = {Makrophage}, language = {en} } @phdthesis{Joshi2021, author = {Joshi, Hemant Kumar}, title = {Function of IRAK2 in macrophages and HECTD1 in B cells}, doi = {10.25972/OPUS-15084}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-150846}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {The Immune system exerts its response against invading pathogens via a cumulative, sequential cooperation of immune cells coordinated by their secreted products. Immune cells, such as macrophages and dendritic cells (DCs), express toll-like receptors (TLRs) to sense the presence of pathogens through pathogen-associated molecular patterns (PAMPs). The interaction of PAMPs with TLRs elicits a cytosolic signaling cascade that enhances the expression of genes to stimulate inflammation. Interleukin 1 receptor-associated kinase 2 (IRAK2) is a component of the TLR signaling pathway. IRAK2 transduces the TLR signal via a direct interaction with TNF receptor-associated factor 6 (TRAF6) and subsequent enhancement of its ubiquitination. During my PhD thesis, I determined that a 55-amino acid long stretch at the C-terminal end of IRAK2 is important for TLR signaling. Overexpression of C-terminal truncated IRAK2 (IRAK2Δ55) in the murine macrophage cell line RAW 264.7 led to impaired CD40 expression after TLR4 stimulation by Lipopolysaccharide (LPS). I observed attenuated competency of IRAK2Δ55 in restoring a full TLR signaling response i.e. IL-6 secretion, NO production and CD40 expression in IRAK2-deficient RAW cells generated via CRISPR-Cas9 approach. Additionally, diminished TLR4 induced activation of nuclear factor κB (NF-κB) and extracellular signal related kinase (ERK) was observed with IRAK2Δ55 reconstituted RAW cells as compared to cell reconstituted with wildtype IRAK2. IRAK2Δ55 reconstituted RAW cells also exhibited reduced TLR4-induced cell death and phosphorylation of receptor interacting protein kinase 3 (RIP3). Co-immunoprecipitation experiments in HEK 293T cells showed that IRAK2Δ55 was still able to bind to TRAF6 alike IRAK2 but failed to induce ubiquitination of TRAF6. In conclusion, the results suggest that the IRAK2 TRAF6 interaction is not sufficient to sustain full TLR signaling. An C-terminus-dependent unknown molecular mechanism is also involved. Through my PhD work, I also analyzed a B cell lineage-specific HECTD1 knock-out mice. HECTD1 is an E3 ubiquitin ligase for various substrate proteins, such as heat shock protein 90 (HSP90), adenomatous polyposis coli and phosphatidylinositol phosphate kinase type 1 γ. Hsp90 regulates a variety of signaling molecules in NF-κB activation pathways which are essential for an optimal B cell response. HECTD1-deficient pro-B cells developed normally into mature B cells. However, TLR4 stimulated HECTD1-deficient B cells displayed reduced immunoglobulin (Ig) production in in vitro cultures. In addition, mice with HECTD1-deficient B cells showed a diminished Ig response after nitrophenylacetyl-keyhole limpet hemocyanin immunization. Thus, HECTD1 is necessary for efficient Ig secretion.}, subject = {Toll-like-Rezeptoren}, language = {en} } @phdthesis{Blum2021, author = {Blum, Carina}, title = {A first step to an integral biointerface design for the early phase of regeneration}, doi = {10.25972/OPUS-21211}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-212117}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {The implantation of any foreign material into the body automatically starts an immune reaction that serves as the first, mandatory step to regenerate tissue. The course of this initial immune reaction decides on the fate of the implant: either the biomaterial will be integrated into the host tissue to subsequently fulfill its intended function (e.g., tissue regeneration), or it will be repelled by fibrous encapsulation that determines the implant failure. Especially neutrophils and macrophages play major roles during this inflammatory response and hence mainly decide on the biomaterial's fate. For clinically relevant tissue engineering approaches, biomaterials may be designed in shape and morphology as well as in their surface functionality to improve the healing outcome, but also to trigger stem cell responses during the subsequent tissue regeneration phase. The main focus of this thesis was to unravel the influence of scaffold characteristics, including scaffold morphology and surface functionality, on primary human innate immune cells (neutrophils and macrophages) and human mesenchymal stromal cells (hMSCs) to assess their in vitro immune response and tissue regeneration capacity, respectively. The fiber-based constructs were produced either via melt electrowriting (MEW), when the precise control over scaffold morphology was required, or via solution electrospinning (ES), when the scaffold design could be neglected. All the fiber-based scaffolds used throughout this thesis were composed of the polymer poly(ε caprolactone) (PCL). A novel strategy to model and alleviate the first direct cell contact of the immune system with a peptide-bioactived fibrous material was presented in chapter 3 by treating the material with human neutrophil elastase (HNE) to imitate the neutrophil attack. The main focus of this study was put on the effect of HNE towards an RGDS-based peptide that was immobilized on the surface of a fibrous material to improve subsequent L929 cell adhesion. The elastase efficiently degraded the peptide-functionality, as evidenced by a decreased L929 cell adhesion, since the peptide integrated a specific HNE-cleavage site (AAPV-motif). A sacrificial hydrogel coating based on primary oxidized hyaluronic acid (proxHA), which dissolved within a few days after the neutrophil attack, provided an optimal protection of the peptide-bioactivated fibrous mesh, i.e, the hydrogel alleviated the neutrophil attack and largely ensured the biomaterial's integrity. Thus, according to these results, a means to protect the biomaterial is required to overcome the neutrophil attack. Chapter 4 was based on the advancement of melt electrowriting (MEW) to improve the printing resolution of MEW scaffolds in terms of minimal inter-fiber distances and a concomitant high stacking precision. Initially, to gain a better MEW understanding, the influence of several parameters, including spinneret diameter, applied pressure, and collector velocity on mechanical properties, crystallinity, fiber diameter and fiber surface morphology was analyzed. Afterward, innovative MEW designs (e.g., box-, triangle-, round , and wall-shaped scaffolds) have been established by pushing the printing parameters to their physical limits. Further, the inter-fiber distance within a standardized box-structured scaffold was successfully reduced to 40 µm, while simultaneously a high stacking precision was maintained. In collaboration with a co-worker of my department (Tina Tylek, who performed all cell-based experiments in this study), these novel MEW scaffolds have been proven to facilitate human monocyte-derived macrophage polarization towards the regenerative M2 type in an elongation-driven manner with a more pronounced effect with decreasing pore sizes. Finally, a pro-adipogenic platform for hMSCs was developed in chapter 5 using MEW scaffolds with immobilized, complex ECM proteins (e.g., human decellularized adipose tissue (DAT), laminin (LN), and fibronectin (FN)) to test for the adipogenic differentiation potential in vitro. Within this thesis, a special short-term adipogenic induction regime enabled to more thoroughly assess the intrinsic pro-adipogenic capacity of the composite biomaterials and prevented any possible masking by the commonly used long-term application of adipogenic differentiation reagents. The scaffolds with incorporated DAT consistently showed the highest adipogenic outcome and hence provided an adipo-inductive microenvironment for hMSCs, which holds great promise for applications in soft tissue regeneration. Future studies should combine all three addressed projects in a more in vivo-related manner, comprising a co-cultivation setup of neutrophils, macrophages, and MSCs. The MEW-scaffold, particularly due to its ability to combine surface functionality and adjustable morphology, has been proven to be a successful approach for wound healing and paves the way for subsequent tissue regeneration.}, subject = {Scaffold }, language = {en} } @phdthesis{ScheideNoeth2021, author = {Scheide-N{\"o}th, Jan-Philipp}, title = {Activation of the Interleukin-5 receptor and its inhibition by cyclic peptides}, doi = {10.25972/OPUS-18250}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-182504}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {The cytokine interleukin-5 (IL-5) is part of the TH2-mediated immune response. As a key regulator of eosinophilic granulocytes (eosinophils), IL-5 controls multiple aspects of eosinophil life. Eosinophils play a pathogenic role in the onset and progression of atopic diseases as well as hypereosinophilic syndrome (HES). Here, cytotoxic proteins and pro-inflammatory mediators stored in intracellular vesicles termed granula are released upon activation thereby causing local inflammation to fight the pathogen. However, if such inflammation persists, tissue damage and organ failure can occur. Due to the close relationship between eosinophils and IL-5 this cytokine has become a major pharmaceutical target for the treatment of atopic diseases or HES. As observed with other cytokines, IL-5 signals by assembling a heterodimeric receptor complex at the cell surface in a stepwise mechanism. In the first step IL-5 binds to its receptor IL-5Rα (CD125). This membrane-located complex then recruits the so-called common beta chain βc (CD131) into a ternary ligand receptor complex, which leads to activation of intracellular signaling cascades. Based on this mechanism various strategies targeting either IL-5 or IL-5Rα have been developed allowing to specifically abrogate IL-5 signaling. In addition to the classical approach of employing neutralizing antibodies against IL 5/IL-5Rα or antagonistic IL-5 variants, two groups comprising small 18 to 30mer peptides have been discovered, that bind to and block IL-5Rα from binding its activating ligand IL-5. Structure-function studies have provided detailed insights into the architecture and interaction of IL-5IL-5Rα and βc. However, structural information for the ternary IL-5 complex as well as IL-5 inhibiting peptides is still lacking. In this thesis three areas were investigated. Firstly, to obtain insights into the second receptor activation step, i.e. formation of the ternary ligand-receptor complex IL-5•IL-5Rα•βc, a high-yield production for the extracellular domain of βc was established to facilitate structure determination of the ternary ligand receptor assembly by either X-ray crystallography or cryo-electron microscopy. In a second project structure analysis of the ectodomain of IL-5Rα in its unbound conformation was attempted. Data on IL-5Rα in its ligand-free state would provide important information as to whether the wrench-like shaped ectodomain of IL-5Rα adopts a fixed preformed conformation or whether it is flexible to adapt to its ligand binding partner upon interaction. While crystallization of free IL-5Rα failed, as the crystals obtained did not diffract X rays to high resolution, functional analysis strongly points towards a selection fit binding mechanism for IL-5Rα instead of a rigid and fixed IL-5Rα structure. Hence IL-5 possibly binds to a partially open architecture, which then closes to the known wrench-like architecture. The latter is then stabilized by interactions within the D1-D2 interface resulting in the tight binding of IL-5. In a third project X-ray structure analysis of a complex of the IL-5 inhibitory peptide AF17121 bound to the ectodomain of IL-5Rα was performed. This novel structure shows how the small cyclic 18mer peptide tightly binds into the wrench-like cleft formed by domains D1 and D2 of IL-5Rα. Due to the partial overlap of its binding site at IL-5Rα with the epitope for IL-5 binding, the peptide blocks IL-5 from access to key residues for binding explaining how the small peptide can effectively compete with the rather large ligand IL-5. While AF17121 and IL-5 seemingly bind to the same site at IL-5Rα, functional studies however showed that recognition and binding of both ligands differ. With the structure for the peptide-receptor complex at hand, peptide design and engineering could be performed to generate AF17121 analogies with enhanced receptor affinity. Several promising positions in the peptide AF17121 could be identified, which could improve inhibition capacity and might serve as a starting point for AF17121-based peptidomimetics that can yield either superior peptide based IL-5 antagonists or small-molecule-based pharmacophores for future therapies of atopic diseases or the hypereosinophilic syndrome.}, subject = {Interleukin 5}, language = {en} } @phdthesis{Tian2021, author = {Tian, Yaming}, title = {Selective C-X and C-H Borylation by N-Heterocyclic Carbene Nickel(0) Complex}, doi = {10.25972/OPUS-21300}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-213004}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {Organoboron compounds are important building blocks in organic synthesis, materials science, and drug discovery. The development of practical and convenient ways to synthesize boronate esters attracted significant interest. Photoinduced borylations originated with stoichiometric reactions of arenes and alkanes with well-defined metal-boryl complexes. Now photoredox-initiated borylations, catalyzed either by transition-metal or organic photocatalysts, and photochemical borylations with high efficiency have become a burgeoning area of research. In this chapter, we summarize research in the field of photocatalytic C-X borylation, especially emphasizing recent developments and trends, based on transition-metal catalysis, metal-free organocatalysis and direct photochemical activation. We focus on reaction mechanisms involving single electron transfer (SET), triplet energy transfer (TET), and other radical processes. We developed a highly selective photocatalytic C-F borylation method that employs a rhodium biphenyl complex as a triplet sensitizer and the nickel catalyst [Ni(IMes)2] (IMes = 1,3-dimesitylimidazolin-2-ylidene) for the C-F bond activation and defluoroborylation process. This tandem catalyst system operates with visible (400 nm) light and achieves borylation of a wide range of fluoroarenes with B2pin2 at room temperature in excellent yields and with high selectivity. Direct irradiation of the intermediary C-F bond oxidative addition product trans-[NiF(ArF)(IMes)2] leads to fast decomposition when B2pin2 is present. This destructive pathway can be bypassed by indirect excitation of the triplet states of the nickel(II) complex via the photoexcited rhodium biphenyl complex. Mechanistic studies suggest that the exceptionally long-lived triplet excited state of the Rh biphenyl complex used as the photosensitizer allows for efficient triplet energy transfer to trans-[NiF(ArF)(IMes)2], which leads to dissociation of one of the NHC ligands. This contrasts with the majority of current photocatalytic transformations, which employ transition metals as excited state single electron transfer agents. We have previously reported that C(arene)-F bond activation with [Ni(IMes)2] is facile at room temperature, but that the transmetalation step with B2pin2 is associated with a high energy barrier. Thus, this triplet energy transfer ultimately leads to a greatly enhanced rate constant for the transmetalation step and thus for the whole borylation process. While addition of a fluoride source such as CsF enhances the yield, it is not absolutely required. We attribute this yield-enhancing effect to (i) formation of an anionic adduct of B2pin2, i.e. FB2pin2-, as an efficient, much more nucleophilic {Bpin-} transfer reagent for the borylation/transmetalation process, and/or (ii) trapping of the Lewis acidic side product FBpin by formation of [F2Bpin]- to avoid the formation of a significant amount of NHC-FBpin and consequently of decomposition of {Ni(NHC)2} species in the reaction mixture. We reported a highly selective and general photo-induced C-Cl borylation protocol that employs [Ni(IMes)2] (IMes = 1,3-dimesitylimidazoline-2-ylidene) for the radical borylation of chloroarenes. This photo-induced system operates with visible light (400 nm) and achieves borylation of a wide range of chloroarenes with B2pin2 at room temperature in excellent yields and with high selectivity, thereby demonstrating its broad utility and functional group tolerance. Mechanistic investigations suggest that the borylation reactions proceed via a radical process. EPR studies demonstrate that [Ni(IMes)2] undergoes very fast chlorine atom abstraction from aryl chlorides to give [NiI(IMes)2Cl] and aryl radicals. Control experiments indicate that light promotes the reaction of [NiI(IMes)2Cl] with aryl chlorides generating additional aryl radicals and [NiII(IMes)2Cl2]. The aryl radicals react with an anionic sp2-sp3 diborane [B2pin2(OMe)]- formed from B2pin2 and KOMe to yield the corresponding borylation product and the [Bpin(OMe)]•- radical anion, which reduces [NiII(IMes)2Cl2] under irradiation to regenerate [NiI(IMes)2Cl] and [Ni(IMes)2] for the next catalytic cycle. A highly efficient and general protocol for traceless, directed C3-selective C-H borylation of indoles with [Ni(IMes)2] as the catalyst was achieved. Activation and borylation of N-H bonds by [Ni(IMes)2] is essential to install a Bpin moiety at the N-position as a traceless directing group, which enables the C3-selective borylation of C-H bonds. The N-Bpin group which is formed is easily converted in situ back to an N-H group by the oxidiative addition product of [Ni(IMes)2] and in situ-generated HBpin. The catalytic reactions are operationally simple, allowing borylation of of a variety of substituted indoles with B2pin2 in excellent yields and with high selectivity. The C-H borylation can be followed by Suzuki-Miyaura cross-coupling of the C-borylated indoles in an overall two-step, one-pot process providing an efficient method for synthesizing C3-functionalized heteroarenes.}, subject = {Borylierung}, language = {en} } @phdthesis{Miesler2021, author = {Miesler, Tobias Hans-Herbert}, title = {Development of diagnostic systems targeting the human tongue as a 24/7 available detector}, doi = {10.25972/OPUS-21449}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-214490}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {To diagnose diseases correctly requires not only trained and skilled personnel, but also cost-intensive and complex equipment. Rapid tests can help with the initial evaluation, but result generation can also take up to several hours, depending on the test system. At this point, novel bioresponsive diagnostic systems are used, responding to the disease related shift of biological processes. They monitor changes in the biological environment and can react to them e.g. with the release of substances. This can be used in drug delivery formulations but can also help to diagnose diseases occurring in the oral cavity and inform patients of their state of health. The tongue is herein used as a 24/7 available detector. In section I of this work, the foundation for the development of these diagnostic systems was laid. A suitable flavoring agent was found, which is stable, can be coupled to the N-terminus of peptides and has a strongly conceivable taste. For the optimization of the protease-sensitive linker (PSL), an analytical system was established (PICS assay), which determines protease-specific cleavable amino acid sequences. In order to replace the PMMA particles previously required, an acetyl protecting group was introduced N-terminally as it protects peptides and proteins in the human body from degradation by human aminopeptidase. The new synthesized flavor was examined with a NIH cell line for cytotoxicity and with an electronic tongue setup for its bitterness. Section II deals with the structure of a system which detects severe inflammations in the oral cavity, e.g. PA. The established PICS assay was used to confirm the previously used PSL sequence in its application. Using solid phase peptide synthesis, 3 linkers were synthesized which respond to the elevated MMP concentrations present in inflammation. The resulting peptides were acetylated and coupled with HATU/DIPEA to the modified denatonium. Cutting experiments with MMPs over different concentration and time ranges confirmed the response of the diagnostic sensor to these enzymes. The obtained construct was examined for cell toxicity by WST assay. The masked bitterness of the sensors was confirmed by an electronic tongue setup. To address non-human proteases (and thereby infections), section III focuses on the establishment of detection system of a cysteine protease SpeB expressed by Streptococcus pyogenes. The in-house expression of SpeB using E. coli cells was established for this purpose. An analysis of the SpeB cleavage sites was performed using a PICS assay setup. Four constructs with different PSL were synthesized analogous to section II. Cleavage experiments with the expressed and purified SpeB showed a response of two constructs to the protease. In addition, a system was established to quantify the concentration of SpeB in human saliva using western blot technique with subsequent quantification. In section IV a compound was synthesized which can now be coupled to a flavor. The final coupled construct is able to detect present NA activity specifically from influenza A and B. The market for existing influenza diagnostics was explored to determine the need for such a system. A neuraminic acid was modified in positions 4 and 7 and protected in such a way that subsequent coupling via the hydroxy-group in position 2 was selectively possible. In summary, this results in a diagnostic platform that can be used anywhere, by anyone and at any time. This represents a new dimension in the rapid diagnosis of inflammations and bacterial or viral infections.}, subject = {Diagnostik}, language = {en} } @phdthesis{Pernitzsch2021, author = {Pernitzsch, Sandy Ramona}, title = {Functional Characterization of the abundant and conserved small regulatory RNA RepG in Helicobacter pylori}, doi = {10.25972/OPUS-12268}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-122686}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {Bacterial small non-coding RNAs (sRNAs) play fundamental roles in controlling and finetuning gene expression in a wide variety of cellular processes, including stress responses, environmental signaling and virulence in pathogens. Despite the identification of hundreds of sRNA candidates in diverse bacteria by genomics approaches, the mechanisms and regulatory capabilities of these posttranscriptional regulators have most intensively been studied in Gram-negative Gammaproteobacteria such as Escherichia coli and Salmonella. So far, almost nothing is known about sRNA-mediated regulation (riboregulation) in Epsilonproteobacteria, including the major human pathogen Helicobacter pylori. H. pylori was even thought to be deficient for riboregulation as none of the sRNAs known from enterobacteria are conserved in Helicobacter and since it lacks the major RNA chaperone Hfq, which is crucial for sRNA function as well as stability in many bacteria. Nonetheless, more than 60 cis- and trans-acting sRNA candidates were recently identified in H. pylori by a global RNA sequencing approach, indicating that this pathogen, in principle, has the capability to use riboregulation for its gene expression control. However, the functions and underlying mechanisms of H. pylori sRNAs remained unclear. This thesis focused on the first functional characterization and target gene identification of a trans-acting sRNA, RepG (Regulator of polymeric G-repeats), in H. pylori. Using in-vitro and in-vivo approaches, RepG was shown to directly base-pair with its C/Urich terminator loop to a variable homopolymeric G-repeat in the 5' untranslated region (UTR) of the tlpB mRNA, thereby regulating expression of the chemotaxis receptor TlpB. While the RepG sRNA is highly conserved, the length of the G-repeat in the tlpB mRNA leader varies among different H. pylori isolates, resulting in a strain-specific tlpB regulation. The modification of the number of guanines within the G-stretch in H. pylori strain 26695 demonstrated that the length of the homopolymeric G-repeat determines the outcome of posttranscriptional control (repression or activation) of tlpB by RepG. This lengthdependent targeting of a simple sequence repeat by a trans-acting sRNA represents a new twist in sRNA-mediated regulation and a novel mechanism of gene expression control, since it uniquely links phase variation by simple sequence repeats to posttranscriptional regulation. In almost all sequenced H. pylori strains, tlpB is encoded in a two gene operon upstream of HP0102, a gene of previously unknown function. This study provided evidence that HP0102 encodes a glycosyltransferase involved in LPS O-chain and Lewis x antigen production. Accordingly, this glycosyltransferase was shown to be essential for mice colonization by H. pylori. The coordinated posttranscriptional regulation of the tlpB-HP0102 operon by antisense base-pairing of RepG to the phase-variable G-repeat in the 5' UTR of the tlpB mRNA allows for a gradual, rather than ON/OFF, control of HP0102 expression, thereby affecting LPS biosynthesis in H. pylori. This fine-tuning of O-chain and Lewis x antigen expression modulates H. pylori antibiotics sensitivity and thus, might be advantageous for Helicobacter colonization and persistence. Whole transcriptome analysis based on microarray and RNA sequencing was used to identify additional RepG target mRNAs and uncover the physiological role of this riboregulator in H. pylori. Altogether, repG deletion affected expression of more than 40 target gene candidates involved various cellular processes, including membrane transport and adhesion, LPS modification, amino acid metabolism, oxidative and nitrosative stress, and nucleic acid modification. The presence of homopolymeric G-repeats/G-rich sequences in almost all target mRNA candidates indicated that RepG hijacks a conserved motif to recognize and regulate multiple target mRNAs in H. pylori. Overall, this study demonstrates that H. pylori employs riboregulation in stress response and virulence control. In addition, this thesis has successfully established Helicobacter as a new model organism for investigating general concepts of gene expression control by Hfq-independent sRNAs and sRNAs in bacterial pathogens.}, subject = {Small RNA}, language = {en} } @phdthesis{Adenugba2021, author = {Adenugba, Akinbami Raphael}, title = {Functional analysis of the gene organization of the pneumoviral attachment protein G}, doi = {10.25972/OPUS-12814}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-128146}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {The putative attachment protein G of pneumonia virus of mice (PVM), a member of the Pneumoviruses, is an important virulence factor with so far ambiguous function in a virus-cell as well as in virus-host context. The sequence of the corresponding G gene is characterized by significant heterogeneity between and even within strains, affecting the gene and possibly the protein structure. This accounts in particular for the PVM strain J3666 for which two differing G gene organizations have been described: a polymorphism in nucleotide 65 of the G gene results in the presence of an upstream open reading frame (uORF) that precedes the main ORF in frame (GJ366665A) or extension of the major G ORF for 18 codons (GJ366665U). Therefore, this study was designed to analyse the impact of the sequence variations in the respective G genes of PVM strains J3666 and the reference strain 15 on protein expression, replication and virulence. First, the controversy regarding the consensus sequence of PVM J3666 was resolved. The analysis of 45 distinct cloned fragments showed that the strain separated into two distinct virus populations defined by the sequence and structure of the G gene. This division was further supported by nucleotide polymorphisms in the neighbouring M and SH genes. Sequential passage of this mixed strain in the cell line standardly used for propagation of virus stocks resulted in selection for the GJ366665A-containing population in one of two experiments pointing towards a moderate replicative advantage. The replacement of the G gene of the recombinant PVM 15 with GJ366665A or GJ366665U, respectively, using a reverse genetic approach indicated that the presence of uORF within the GJ366665A significantly reduced the expression of the main G ORF on translational level while the potential extension of the ORF in GJ366665U increased G protein expression. In comparison, the effect of the G gene-structure on virus replication was inconsistent and dependent on cell line and type. While the presence of uORF correlated with a replication advantage in the standardly used BHK-21 cells and primary murine embryonic fibroblasts, replication in the murine macrophage cell line RAW 264.7 did not. In comparison, the GJ366665U variant was not associated with any effect on replication in cultured cells at all. Nonetheless, in-vivo analysis of the recombinant viruses associated the GJ366665U gene variant, and hence an increased G expression, with higher virulence whereas the GJ366665A gene, and therefore an impaired G expression, conferred an attenuated phenotype to the virus. To extend the study to other G gene organizations, a recombinant PVM expressing a G protein without the cytoplasmic domain and for comparison a G-deletion mutant, both known to be attenuated in vivo, were studied. Not noticed before, this structure of the G gene was associated with a 75\% reduction in G protein expression and a significant attenuation of replication in macrophage-like cells. This attenuation was even more prominent for the virus lacking G. Taking into consideration the higher reduction in G protein levels compared to the GJ366665A variant indicates that a threshold amount of G is required for efficient replication in these cells. In conclusion, the results gathered indicated that the expression levels of the G protein were modulated by the sequence of the 5' untranslated region of the gene. At the same time the G protein levels modulated the virulence of PVM.}, subject = {G glycoprotein}, language = {en} } @phdthesis{Hecht2021, author = {Hecht, Markus}, title = {Liquid-Crystalline Perylene Bisimide and Diketopyrrolopyrrole Assemblies}, doi = {10.25972/OPUS-21698}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-216987}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {The research presented in this thesis illustrates that self-assembly of organic molecules guided by intermolecular forces is a versatile bottom-up approach towards functional materials. Through the specific design of the monomers, supramolecular architectures with distinct spatial arrangement of the individual building blocks can be realized. Particularly intriguing materials can be achieved when applying the supramolecular approach to molecules forming liquid-crystalline phases as these arrange in ordered, yet mobile structures. Therefore, they exhibit anisotropic properties on a macroscopic level. It is pivotal to precisely control the interchromophoric arrangement as functions originate in the complex structures that are formed upon self-assembly. Consequently, the aim of this thesis was the synthesis and characterization of liquid-crystalline phases with defined supramolecular arrangements as well as the investigation of the structure-property relationship. For this purpose, perylene bisimide and diketopyrrolopyrrole chromophores were used as they constitute ideal building blocks towards functional supramolecular materials due to their thermal stability, lightfastness, as well as excellent optical and electronic features desirable for the application in, e.g., organic electronics.}, subject = {Selbstorganisation}, language = {en} } @phdthesis{Simon2021, author = {Simon, Camilla}, title = {Financial Market Effects of Macroeconomic Policies}, doi = {10.25972/OPUS-21765}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-217654}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {Within three self-contained studies, this dissertation studies the impact and interactions between different macroeconomic policy measures in the context of financial markets empirically and quantitatively. The first study of this dissertation sheds light on the financial market effects of unconventional central bank asset purchase programs in the Eurozone, in particular sovereign bond asset purchase programs. The second study quantifies the direct implications of unconventional monetary policy on decisions by German public debt management regarding the maturity structure of gross issuance. The third study provides novel evidence on the role of private credit markets in the propagation of public spending toward private consumption in the U.S. economy. Across these three studies a set of different time-series econometric methods is applied including error correction models and event study frameworks to analyze contemporaneous interactions in financial and macroeconomic data in the context of unconventional monetary policy, as well as vector auto regressions (VARs) and local projections to trace the dynamic consequences of macroeconomic policies over time.}, subject = {Geldpolitik}, language = {en} } @phdthesis{HafergebZailer2021, author = {Hafer [geb. Zailer], Elina}, title = {Tagging - Development of new qNMR methods}, doi = {10.25972/OPUS-21958}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-219583}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {High-resolution nuclear magnetic resonance (NMR) spectroscopy is used in structure elucidation and qualitative as well as quantitative examination of product components. Despite the worldwide development of numerous innovative NMR spectroscopic methods, several official methods that analyze specific substances and do not represent a holistic analysis, are still in use for the quality control of drugs, food and chemicals. Thus, counterfeit or contaminated products of inferior quality can be brought onto the market and distributed despite previous quality controls. To prevent this, three NMR spectroscopic methods have been developed within the scope of this work (1) to study the peroxide value in vegetable and animal oils, (2) for the qualitative and quantitative analysis of metal cations and (3) to determine the enantiomeric excess in chiral alcohols. In oil analysis, titration methods are used to determine the bulk quality parameters such as peroxide value, which represents the concentration of peroxides. Titrations show several drawbacks, such as the need of a large amount of sample and solvents, cross reactions and the low robustness. Thus, an alternative NMR spectroscopic method was developed to improve the peroxide analysis by using triphenylphosphine as a derivatization reagent, which reacts with peroxides in a stoichiometric ratio of 1:1 forming triphenylphosphine oxide. In the 1H-31P decoupled NMR spectrum, the signals of the unreacted triphenylphosphine and the reacted triphenylphosphine oxide are detected at 7.4 ppm and 7.8 ppm, respectively. The ratio of the two signals is used for the calculation of the peroxide concentration. 108 oil samples with a peroxide value between 1 meq/kg and 150 meq/kg were examined using the developed method. Oils with a very low peroxide value of less than 3 meq/kg showed a relative standard deviation of 4.9\%, highly oxidized oils with a peroxide value of 150 meq/kg of 0.2\%. The NMR method was demonstrated as a powerful technique for the analysis of vegetable and krill oils. Another 1H NMR spectroscopic method was developed for the qualitative determination of Be2+, Sr2+ and Cd2+, and for the qualitative and quantitative determination of Ca2+, Mg2+, Hg2+, Sn2+, Pb2+ and Zn2+ by using ethylenediamine tetraacetate (EDTA) as complexing agent. EDTA is a hexadentate ligand that forms stable chelate complexes with divalent cations. The known amount of added EDTA and the signal ratio of free and complexed EDTA are used to calculate the concentrations of the divalent cations, which makes the use of an internal standard obsolete. The use of EDTA with Be2+, Sr2+, Cd2+, Ca2+, Mg2+, Hg2+, Sn2+, Pb2+ and Zn2+ result in complexes whose signals are pH-independent, showing cation-specific chemical shifts and couplings in the 1H NMR spectrum that are used for identification and quantification. In the presented NMR method, the limit of quantification of the cations Ca2+, Mg2+, Hg2+, Sn2+, Pb2+, and Zn2+ was determined with 5-22 μg/mL. This method is applicable in the food and drug sectors. The third NMR spectroscopic method introduced an alternative determination of the enantiomer excess (ee) of the chiral alcohols menthol, borneol, 1-phenylethanol and linalool using phosgene as a derivatizing reagent. Phosgene reacts with a chiral alcohol to form carboxylic acid diesters, made of two identical (RR, SS) or two different enantiomers (RS, SR). These two different types of diastereomers can be examined by the difference of their chemical shifts. In the presented method, the integration values of the carbonyl signals in the 13C NMR spectrum are used for the determination of the enantiomer excess. The limit of quantification depends, among others, on the sample and on the non-labelled or 13C-labelled phosgene used for the analysis. In the case of menthol, a quantification limit of ee=99.1\% was determined using non-labelled phosgene and ee=99.9\% using 13C-labelled phosgene. The 13C NMR method was also applied for the quality control of the enantiomeric purity of borneol, 1-phenylethanol and linalool. The developed 13C NMR method represents a powerful alternative to Mosher's reagent for investigating the enantiomeric excess in chiral alcohols. This work demonstrates the variety of possibilities of applications for the quantitative nuclear magnetic resonance spectroscopy in the chemical analysis of drugs, food and chemicals using tagging reactions such as derivatizations and complexations. The nuclear resonance spectroscopic methods developed in this research work represent powerful alternatives to the previously used quality control techniques.}, subject = {NMR Spektroskopie}, language = {en} } @phdthesis{Oberdoerfer2021, author = {Oberd{\"o}rfer, Sebastian}, title = {Better Learning with Gaming: Knowledge Encoding and Knowledge Learning Using Gamification}, doi = {10.25972/OPUS-21970}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-219707}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {Computer games are highly immersive, engaging, and motivating learning environments. By providing a tutorial at the start of a new game, players learn the basics of the game's underlying principles as well as practice how to successfully play the game. During the actual gameplay, players repetitively apply this knowledge, thus improving it due to repetition. Computer games also challenge players with a constant stream of new challenges which increase in difficulty over time. As a result, computer games even require players to transfer their knowledge to master these new challenges. A computer game consists of several game mechanics. Game mechanics are the rules of a computer game and encode the game's underlying principles. They create the virtual environments, generate a game's challenges and allow players to interact with the game. Game mechanics also can encode real world knowledge. This knowledge may be acquired by players via gameplay. However, the actual process of knowledge encoding and knowledge learning using game mechanics has not been thoroughly defined, yet. This thesis therefore proposes a theoretical model to define the knowledge learning using game mechanics: the Gamified Knowledge Encoding. The model is applied to design a serious game for affine transformations, i.e., GEtiT, and to predict the learning outcome of playing a computer game that encodes orbital mechanics in its game mechanics, i.e., Kerbal Space Program. To assess the effects of different visualization technologies on the overall learning outcome, GEtiT visualizes the gameplay in desktop-3D and immersive virtual reality. The model's applicability for effective game design as well as GEtiT's overall design are evaluated in a usability study. The learning outcome of playing GEtiT and Kerbal Space Program is assessed in four additional user studies. The studies' results validate the use of the Gamified Knowledge Encoding for the purpose of developing effective serious games and to predict the learning outcome of existing serious games. GEtiT and Kerbal Space Program yield a similar training effect but a higher motivation to tackle the assignments in comparison to a traditional learning method. In conclusion, this thesis expands the understanding of using game mechanics for an effective learning of knowledge. The presented results are of high importance for researches, educators, and developers as they also provide guidelines for the development of effective serious games.}, subject = {Serious game}, language = {en} } @phdthesis{Eissler2021, author = {Eißler, Christoph Marcel}, title = {Assessment of the left ventricular systolic and diastolic function in rats using electrocardiogram-gated cardiac positron emission tomography}, doi = {10.25972/OPUS-21976}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-219765}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {DD is a cardiac disturbance, which has gained increasing importance in recent years due to its important role in different cardiac disease and cardiomyopathies including ischemic cardiomyopathy, arterial hypertension and diabetic cardiomyopathy. ECG-gated 18F-FDG PET is an imaging technique, that can distinguish between districts of myocardial viability and myocardial scars and further provides information of great interest on the efficacy of experimental approaches designed to improve the cardiac function and/or myocardial metabolism in experimental small animal models. However, ECG-gated 18F-FDG PET is a technique whose feasibility in the assessment of the LV diastolic function in small animals has not been a subject of study. In this thesis, the ability of the ECG-gated 18F-FDG PET for the assessment of both the systolic and diastolic function in eight control rats and in seven ZDF rats, which are an experimental animal model mimicking T2DM conditions and diabetic related complications in humans including DCM, has been investigated The ECG-gated 18F-FDG PET imaging was performed under hyperinsulinemic-euglycemic clamping and the data were stored in list mode files and retrospectively reconstructed. The systolic and diastolic parameters were achieved from the time/volume and the time/filling curve calculated from the software HFV. Additionally, the influence of the number of gates per cardiac cycle on the LV volumes and function parameters has been studied. Hyperinsulinemic-euglycemic clamp procedure and blood glucose measurement did confirm the development of a manifest diabetes in the ZDF rats at the timepoint of the experiments. Regarding the systolic parameters, no significant difference could be detected between the ZDF and ZL rats. The values for the CO were similar in both groups, which demonstrates a similar LV systolic function in the ZDF and the ZL rats at the age of 13 weeks. Values for the systolic parameters are in good line with previous PET, MRI and cardiac catheterization-based studies in diabetic rats. The main finding of this study was that by using in vivo ECG-gated 18F-FDG PET and the software HFV, reliable diastolic parameters could be calculated. Moreover, it was possible to detect the presence of a mild impaired diastolic filling in the ZDF rats in absence of any systolic alteration. This impaired diastolic function in an early stage of diabetes could also be detected by other investigators, who used echocardiography or cardiac catheterization. Therefore, this is the first study showing, that the assessment of the diastolic function in rats can be carried out by ECG-gated 18F-FDG PET imaging. In conclusion, additionally to calculating LV volumes and LV EF, ECG-gated 18F-FDG PET can evaluate the diastolic function of healthy and diabetic rats and is able to detect a DD in ZDF rats.}, subject = {Positronen-Emissions-Tomografie}, language = {en} } @phdthesis{Saedtler2021, author = {Saedtler, Marco}, title = {Pharmaceutical formulation strategies for novel antibiotic substances utilizing salt formation and two- and three-dimensional printing techniques}, doi = {10.25972/OPUS-21978}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-219784}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {Salt formation is a routinely used strategy for poorly water-soluble drugs and traditionally performed with small inorganic counterions. High energy crystal lattices as well as effects on the local pH within the aqueous boundary layer during dissolution drive the increased dissolution rate and apparent solubility. Ionic liquids however, by definition low melting ionic salts with often large organic counterions, combine an increased dissolution rate with solubilization of the drug by the counterion itself. Long lasting supersaturation profiles of increased kinetic solubility were reported for several drugs formulated as ionic liquids increasing their overall bioavailability. Furthermore, aggregation and micellization between highly lipophilic compounds and amphiphilic bile acids was described before, demonstrating the capabilities of the human body itself to utilize solubilization of poorly water-soluble compounds. Development of novel counterions not only tailoring the desired physicochemical properties e.g. dissolution rate of the parent drug but adding - in a best-case scenario synergistic - pharmacological activity has been driven forward in the last years. However, salt formation can only be applied for ionizable i.e. acidic or basic compounds. While co-crystals can be used as a nonionized alternative, their formation is not always successful leading to an urgent need for other formulation strategies. In these lines, development of 2D and 3D printing techniques has been ongoing for the last decades and their pharmaceutical application has been demonstrated. The versatile nature and commercial availability allow a decentralized production further elaborating this technique for a highly flexible and patient-oriented supply with medication. This thesis focuses on the theoretical background and potential application of salt formation in the pharmaceutical development of a drug candidate. The first section presents the current knowledge and state of the art in preparation of low melting ionic liquids i.e. salts and is translated to the in vitro investigation of molecular interaction between the poorly water-soluble drug imatinib and components of the human intestinal fluid in the second section. Development of novel antibiotic counterions and assessment of their potential use in pharmaceutical formulations with fluoroquinolones is described in the last two sections. Chapter I describes the application of low melting ionic liquids in pharmaceutical formulation and details their development in the last two decades from versatile organic solvents in chemical synthesis towards amorphous strategies for drug delivery. The chapter gives a general overview on molecular structure and physicochemical properties of several drug containing ionic liquids and details the mechanisms which attribute to a typically fast dissolution, increased aqueous solubility as well as enhanced permeation which was reported in several publications. Chapter II translates the increased aqueous solubility of drugs by an organic counterion to the human gastrointestinal tract with taurocholate and lecithin as main drivers for the solubilization of highly lipophilic and poorly water-soluble drugs. Investigation of the interaction of imatinib - a poorly water-soluble weak base - with fasted- and fed state simulated intestinal fluids revealed a complex interplay between the components of the intestinal fluid and the drug. Mixed vesicles and micelles were observed in concentration dependent aggregation assays and revealed differences in their size, molecular arrangement as well as composition, depending on the tested drug concentration. Overall, the study outlines the effective interaction of weakly basic drugs with taurocholate and lecithin to minimize recrystallization during intestine passage finally leading to favorable supersaturation profiles. Chapter III focuses on the development of novel antibiotic counterions which potentially move the evolution of ionic liquids from a pharmaceutical salt with tailored physicochemical properties to a synergistic combination of two active pharmaceutical ingredients. The natural occurring anacardic acid derived from the cashew nut shell inspired a series of antibacterial active acidic compounds with increasing alkyl chain length. Their physicochemical properties, antibacterial activity, bacterial biofilm inhibition and cytotoxicity were detailed and in vivo activity in a Galleria mellonella model was assessed. This group of anacardic acid derivatives is synthetically accessible, easily modifiable and yielded two compounds with favorable activity and physicochemical profile for further drug development. Chapter IV outlines the potential application of anacardic acid derivatives in pharmaceutical formulations by salt formation with fluoroquinolone antibiotics as well as novel techniques such as 2D/3D printing for preparation of drug imprinted products. Despite anacardic acid derivatives demonstrated promising physicochemical properties, salt formation with fluoroquinolone antibiotics was not feasible. However, 2D/3D printed samples with anacardic acid derivative alone or in combination with ciprofloxacin demonstrated physical compatibility between drug and matrix as well as antibacterial activity against three S. aureus strains in an agar diffusion assay. Conclusively, drug printing can be applied for the herein tested compounds, but further process development is necessary. In summary, preparation of low melting ionic liquids, salts or co-crystals is an appropriate strategy to increase the aqueous solubility of poorly water-soluble drugs and tailor physicochemical properties. The counterion itself solubilizes the drug and furthermore potentially interferes with the complex micellar environment in the human intestine. However, salt formation as routinely used formulation strategy is not feasible in every case and development of alternative techniques is crucial to hurdle challenges related to unfavorable physicochemical properties. The outlined techniques for 2D/3D drug printing provide versatile production of drug products while extending the design space for novel drug development.}, subject = {L{\"o}slichkeit}, language = {en} } @phdthesis{Bauer2021, author = {Bauer, Andr{\´e}}, title = {Automated Hybrid Time Series Forecasting: Design, Benchmarking, and Use Cases}, doi = {10.25972/OPUS-22025}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-220255}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {These days, we are living in a digitalized world. Both our professional and private lives are pervaded by various IT services, which are typically operated using distributed computing systems (e.g., cloud environments). Due to the high level of digitalization, the operators of such systems are confronted with fast-paced and changing requirements. In particular, cloud environments have to cope with load fluctuations and respective rapid and unexpected changes in the computing resource demands. To face this challenge, so-called auto-scalers, such as the threshold-based mechanism in Amazon Web Services EC2, can be employed to enable elastic scaling of the computing resources. However, despite this opportunity, business-critical applications are still run with highly overprovisioned resources to guarantee a stable and reliable service operation. This strategy is pursued due to the lack of trust in auto-scalers and the concern that inaccurate or delayed adaptations may result in financial losses. To adapt the resource capacity in time, the future resource demands must be "foreseen", as reacting to changes once they are observed introduces an inherent delay. In other words, accurate forecasting methods are required to adapt systems proactively. A powerful approach in this context is time series forecasting, which is also applied in many other domains. The core idea is to examine past values and predict how these values will evolve as time progresses. According to the "No-Free-Lunch Theorem", there is no algorithm that performs best for all scenarios. Therefore, selecting a suitable forecasting method for a given use case is a crucial task. Simply put, each method has its benefits and drawbacks, depending on the specific use case. The choice of the forecasting method is usually based on expert knowledge, which cannot be fully automated, or on trial-and-error. In both cases, this is expensive and prone to error. Although auto-scaling and time series forecasting are established research fields, existing approaches cannot fully address the mentioned challenges: (i) In our survey on time series forecasting, we found that publications on time series forecasting typically consider only a small set of (mostly related) methods and evaluate their performance on a small number of time series with only a few error measures while providing no information on the execution time of the studied methods. Therefore, such articles cannot be used to guide the choice of an appropriate method for a particular use case; (ii) Existing open-source hybrid forecasting methods that take advantage of at least two methods to tackle the "No-Free-Lunch Theorem" are computationally intensive, poorly automated, designed for a particular data set, or they lack a predictable time-to-result. Methods exhibiting a high variance in the time-to-result cannot be applied for time-critical scenarios (e.g., auto-scaling), while methods tailored to a specific data set introduce restrictions on the possible use cases (e.g., forecasting only annual time series); (iii) Auto-scalers typically scale an application either proactively or reactively. Even though some hybrid auto-scalers exist, they lack sophisticated solutions to combine reactive and proactive scaling. For instance, resources are only released proactively while resource allocation is entirely done in a reactive manner (inherently delayed); (iv) The majority of existing mechanisms do not take the provider's pricing scheme into account while scaling an application in a public cloud environment, which often results in excessive charged costs. Even though some cost-aware auto-scalers have been proposed, they only consider the current resource demands, neglecting their development over time. For example, resources are often shut down prematurely, even though they might be required again soon. To address the mentioned challenges and the shortcomings of existing work, this thesis presents three contributions: (i) The first contribution-a forecasting benchmark-addresses the problem of limited comparability between existing forecasting methods; (ii) The second contribution-Telescope-provides an automated hybrid time series forecasting method addressing the challenge posed by the "No-Free-Lunch Theorem"; (iii) The third contribution-Chamulteon-provides a novel hybrid auto-scaler for coordinated scaling of applications comprising multiple services, leveraging Telescope to forecast the workload intensity as a basis for proactive resource provisioning. In the following, the three contributions of the thesis are summarized: Contribution I - Forecasting Benchmark To establish a level playing field for evaluating the performance of forecasting methods in a broad setting, we propose a novel benchmark that automatically evaluates and ranks forecasting methods based on their performance in a diverse set of evaluation scenarios. The benchmark comprises four different use cases, each covering 100 heterogeneous time series taken from different domains. The data set was assembled from publicly available time series and was designed to exhibit much higher diversity than existing forecasting competitions. Besides proposing a new data set, we introduce two new measures that describe different aspects of a forecast. We applied the developed benchmark to evaluate Telescope. Contribution II - Telescope To provide a generic forecasting method, we introduce a novel machine learning-based forecasting approach that automatically retrieves relevant information from a given time series. More precisely, Telescope automatically extracts intrinsic time series features and then decomposes the time series into components, building a forecasting model for each of them. Each component is forecast by applying a different method and then the final forecast is assembled from the forecast components by employing a regression-based machine learning algorithm. In more than 1300 hours of experiments benchmarking 15 competing methods (including approaches from Uber and Facebook) on 400 time series, Telescope outperformed all methods, exhibiting the best forecast accuracy coupled with a low and reliable time-to-result. Compared to the competing methods that exhibited, on average, a forecast error (more precisely, the symmetric mean absolute forecast error) of 29\%, Telescope exhibited an error of 20\% while being 2556 times faster. In particular, the methods from Uber and Facebook exhibited an error of 48\% and 36\%, and were 7334 and 19 times slower than Telescope, respectively. Contribution III - Chamulteon To enable reliable auto-scaling, we present a hybrid auto-scaler that combines proactive and reactive techniques to scale distributed cloud applications comprising multiple services in a coordinated and cost-effective manner. More precisely, proactive adaptations are planned based on forecasts of Telescope, while reactive adaptations are triggered based on actual observations of the monitored load intensity. To solve occurring conflicts between reactive and proactive adaptations, a complex conflict resolution algorithm is implemented. Moreover, when deployed in public cloud environments, Chamulteon reviews adaptations with respect to the cloud provider's pricing scheme in order to minimize the charged costs. In more than 400 hours of experiments evaluating five competing auto-scaling mechanisms in scenarios covering five different workloads, four different applications, and three different cloud environments, Chamulteon exhibited the best auto-scaling performance and reliability while at the same time reducing the charged costs. The competing methods provided insufficient resources for (on average) 31\% of the experimental time; in contrast, Chamulteon cut this time to 8\% and the SLO (service level objective) violations from 18\% to 6\% while using up to 15\% less resources and reducing the charged costs by up to 45\%. The contributions of this thesis can be seen as major milestones in the domain of time series forecasting and cloud resource management. (i) This thesis is the first to present a forecasting benchmark that covers a variety of different domains with a high diversity between the analyzed time series. Based on the provided data set and the automatic evaluation procedure, the proposed benchmark contributes to enhance the comparability of forecasting methods. The benchmarking results for different forecasting methods enable the selection of the most appropriate forecasting method for a given use case. (ii) Telescope provides the first generic and fully automated time series forecasting approach that delivers both accurate and reliable forecasts while making no assumptions about the analyzed time series. Hence, it eliminates the need for expensive, time-consuming, and error-prone procedures, such as trial-and-error searches or consulting an expert. This opens up new possibilities especially in time-critical scenarios, where Telescope can provide accurate forecasts with a short and reliable time-to-result. Although Telescope was applied for this thesis in the field of cloud computing, there is absolutely no limitation regarding the applicability of Telescope in other domains, as demonstrated in the evaluation. Moreover, Telescope, which was made available on GitHub, is already used in a number of interdisciplinary data science projects, for instance, predictive maintenance in an Industry 4.0 context, heart failure prediction in medicine, or as a component of predictive models of beehive development. (iii) In the context of cloud resource management, Chamulteon is a major milestone for increasing the trust in cloud auto-scalers. The complex resolution algorithm enables reliable and accurate scaling behavior that reduces losses caused by excessive resource allocation or SLO violations. In other words, Chamulteon provides reliable online adaptations minimizing charged costs while at the same time maximizing user experience.}, subject = {Zeitreihenanalyse}, language = {en} } @phdthesis{Boettcher2021, author = {B{\"o}ttcher, Jan Frederic}, title = {Fate of Topological States of Matter in the Presence of External Magnetic Fields}, doi = {10.25972/OPUS-22045}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-220451}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {The quantum Hall (QH) effect, which can be induced in a two-dimensional (2D) electron gas by an external magnetic field, paved the way for topological concepts in condensed matter physics. While the QH effect can for that reason not exist without Landau levels, there is a plethora of topological phases of matter that can exist even in the absence of a magnetic field. For instance, the quantum spin Hall (QSH), the quantum anomalous Hall (QAH), and the three-dimensional (3D) topological insulator (TI) phase are insulating phases of matter that owe their nontrivial topology to an inverted band structure. The latter results from a strong spin-orbit interaction or, generally, from strong relativistic corrections. The main objective of this thesis is to explore the fate of these preexisting topological states of matter, when they are subjected to an external magnetic field, and analyze their connection to quantum anomalies. In particular, the realization of the parity anomaly in solid state systems is discussed. Furthermore, band structure engineering, i.e., changing the quantum well thickness, the strain, and the material composition, is employed to manipulate and investigate various topological properties of the prototype TI HgTe. Like the QH phase, the QAH phase exhibits unidirectionally propagating metallic edge channels. But in contrast to the QH phase, it can exist without Landau levels. As such, the QAH phase is a condensed matter analog of the parity anomaly. We demonstrate that this connection facilitates a distinction between QH and QAH states in the presence of a magnetic field. We debunk therefore the widespread belief that these two topological phases of matter cannot be distinguished, since they are both described by a \$\mathbb{Z}\$ topological invariant. To be more precise, we demonstrate that the QAH topology remains encoded in a peculiar topological quantity, the spectral asymmetry, which quantifies the differences in the number of states between the conduction and valence band. Deriving the effective action of QAH insulators in magnetic fields, we show that the spectral asymmetry is thereby linked to a unique Chern-Simons term which contains the information about the QAH edge states. As a consequence, we reveal that counterpropagating QH and QAH edge states can emerge when a QAH insulator is subjected to an external magnetic field. These helical-like states exhibit exotic properties which make it possible to disentangle QH and QAH phases. Our findings are of particular importance for paramagnetic TIs in which an external magnetic field is required to induce the QAH phase. A byproduct of the band inversion is the formation of additional extrema in the valence band dispersion at large momenta (the `camelback'). We develop a numerical implementation of the \$8 \times 8\$ Kane model to investigate signatures of the camelback in (Hg,Mn)Te quantum wells. Varying the quantum well thickness, as well as the Mn-concentration, we show that the class of topologically nontrivial quantum wells can be subdivided into direct gap and indirect gap TIs. In direct gap TIs, we show that, in the bulk \$p\$-regime, pinning of the chemical potential to the camelback can cause an onset to QH plateaus at exceptionally low magnetic fields (tens of mT). In contrast, in indirect gap TIs, the camelback prevents the observation of QH plateaus in the bulk \$p\$-regime up to large magnetic fields (a few tesla). These findings allowed us to attribute recent experimental observations in (Hg,Mn)Te quantum wells to the camelback. Although our discussion focuses on (Hg,Mn)Te, our model should likewise apply to other topological materials which exhibit a camelback feature in their valence band dispersion. Furthermore, we employ the numerical implementation of the \$8\times 8\$ Kane model to explore the crossover from a 2D QSH to a 3D TI phase in strained HgTe quantum wells. The latter exhibit 2D topological surface states at their interfaces which, as we demonstrate, are very sensitive to the local symmetry of the crystal lattice and electrostatic gating. We determine the classical cyclotron frequency of surface electrons and compare our findings with experiments on strained HgTe.}, subject = {Topologie}, language = {en} } @phdthesis{Aurbach2021, author = {Aurbach, Katja}, title = {Studies on the role of the cytoskeleton in platelet production}, doi = {10.25972/OPUS-23466}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-234669}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {Platelets are small anucleated cell fragments that originate from megakaryocytes (MKs), which are large cells located in the bone marrow (BM). MKs extend long cytoplasmic protrusions, a process which is called proplatelet formation, into the lumen of the sinusoidal vessels where platelets are sized by the bloodstream. During the process of platelet biogenesis, segments of the MK penetrate the endothelium and, through cytoskeletal remodeling inside the MK, proplatelet fragments are released. Rho GTPases, such as RhoA and RhoB, are critically involved in cytoskeletal rearrangements of both the actin and the tubulin cytoskeleton. The first part of this thesis concentrated on the protein RhoB and its involvement in cytoskeletal organization in MKs and platelets. Single knockout (KO) mice lacking RhoB had a minor microthrombocytopenia, which means a smaller platelet size and reduced platelet number, accompanied by defects in the microtubule cytoskeleton in both MKs and platelets. In particular, tubulin organization and stability, which is regulated by posttranslational modifications of α-tubulin, were disturbed in RhoB-/- platelets. In contrast, RhoB-/- MKs produced abnormally shaped proplatelets but had unaltered posttranslational modifications of α-tubulin. The second part focused on the influence of RhoA and RhoB on MK localization and platelet biogenesis in murine BM. Many intact RhoA-/- MKs are able to transmigrate through the endothelial layer and stay attached to the vessel wall, whereas only 1\% of wildtype (wt) MKs are detectable in the intrasinusoidal space. Concomitant deficiency of RhoA and RhoB reverts this transmigration and results in macrothrombocytopenia, MK clusters around the vessel in the BM and defective MK development. The underlying mechanism that governs MKs to distinct localizations in the BM is poorly understood, thus this thesis suggests that this process may be dependent on RhoB protein levels, as RhoA deficiency is coincided with increased RhoB levels in MKs and platelets. The third part of this thesis targeted the protein PDK1, a downstream effector of Rho GTPases, in regard to MK maturation and polarization throughout thrombopoiesis. MK- and platelet-specific KO in mice led to a significant macrothrombocytopenia, impaired actin cytoskeletal reorganization during MK spreading and proplatelet formation, with defective MK maturation. This was associated with decreased PAK activity and, subsequently, phosphorylation of its substrates LIMK and Cofilin. Together, the observations of this thesis highlight the importance of Rho GTPases and their downstream effectors on the regulation of the MK and platelet cytoskeleton.}, subject = {Megakaryozyt}, language = {en} } @phdthesis{Wang2021, author = {Wang, Zhenjiu}, title = {Numerical simulations of continuum field theories and exotic quantum phase transitions}, doi = {10.25972/OPUS-23800}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-238001}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {In this thesis, we investigate several topics pertaining to emergent collective quantum phenomena in the domain of correlated fermions, using the quantum Monte Carlo method. They display exotic low temperature phases as well as phase transitions which are beyond the Landau-Ginzburg theory. The interplay between three key points is crucial for us: fermion statistics, many body effects and topology. We highlight the following several achievements: 1. Successful modeling of continuum field theories with lattice Hamiltonians, 2. their sign-problem-free Monte Carlo simulations of these models, 3. and numerical results beyond mean field descriptions. First, we consider a model of Dirac fermions with a spin rotational invariant inter- action term that dynamically generates a quantum spin Hall insulator. Surprisingly, an s-wave superconducting phase emerges due to the condensation of topological de- fects of the spin Hall order parameter. When particle-hole symmetry is present, the phase transition between the topological insulator and the superconducting phase is an example of a deconfined quantum critical point(DQCP). Although its low energy effec- tive field theory is purely bosonic, the exact conservation law of the skyrmion number operator rules out the possibility of realizing this critical point in lattice boson models. This work is published in Ref. [1]. Second, we dope the dynamically generated quantum spin Hall insulator mentioned above. Hence it is described by a field theory without Lorentz invariance due to the lack of particle-hole symmetry. This sheds light on the extremely hot topic of twisted bilayergraphene: Why is superconductivity generated when the repulsive Coulomb interaction is much stronger than the electron-phonon coupling energy scale? In our case, Cooper pairs come from the topological skyrmion defects of the spin current order parameter, which are charged. Remarkably, the nature of the phase transition is highly non-mean-field-like: one is not allowed to simply view pairs of electrons as single bosons in a superfluid-Mott insulator transition, since the spin-current order parameter can not be ignored. Again, due to the aforementioned skyrmions, the two order parameters are intertwined: One phase transition occurs between the two symmetry breaking states. This work is summarized in Ref. [2]. Third, we investigate the 2 + 1 dimensional O(5) nonlinear sigma model with a topological Wess-Zumino-Witten term. Remarkably, we are able to perform Monte Carlo calculations with a UV cutoff given by the Dirac Landau level quantization. It is a successful example of simulating a continuous field theory without lattice regularization which leads to an additional symmetry breaking. The Dirac background and the five anti-commuting Dirac mass terms naturally introduce the picture of a non-trivial Berry phase contribution in the parameter space of the five component order parameter. Using the finite size scaling method given by the flux quantization, we find a stable critical phase in the low stiffness region of the sigma model. This is a candidate ground state of DQCP when the O(5) symmetry breaking terms are irrelevant at the critical point. Again, it has a bosonic low energy field theory which is seemingly unable to be realized in pure boson Hamiltonians. This work is summarized in Ref. [3].}, subject = {Quanten-Monte-Carlo-Methode}, language = {en} } @phdthesis{Kasper2021, author = {Kasper, Christian Andreas}, title = {Engineering of Highly Coherent Silicon Vacancy Defects in Silicon Carbide}, doi = {10.25972/OPUS-23779}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-237797}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {In this work the creation of silicon vacancy spin defects in silicon carbide with predictable properties is demonstrated. Neutron and electron irradiation was used to create silicon vacancy ensembles and proton beam writing to create isolated vacancies at a desired position. The coherence properties of the created silicon vacancies as a function of the emitter density were investigated and a power-law function established. Sample annealing was implemented to increase the coherence properties of existing silicon vacancies. Further, spectral hole burning was used to implement absolute dc-magnetometry.}, subject = {St{\"o}rstelle}, language = {en} } @phdthesis{Poehner2021, author = {P{\"o}hner, Nicolai}, title = {Educational robotics competitions as out-of-school learning setting for STEM education: An empirical study on students' learning of problem solving skills through participation in the World Robot Olympiad}, doi = {10.25972/OPUS-24317}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-243179}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {Educational robotics is an innovative approach to teaching and learning a variety of different concepts and skills as well as motivating students in the field of Science, Technology, Engineering, and Mathematics (STEM) education. This especially applies to educational robotics competitions such as, for example, the FIRST LEGO League, the RoboCup Junior, or the World Robot Olympiad as out-of-school and goal-oriented approach to educational robotics. These competitions have gained greatly in popularity in recent years and thousands of students participate in these competitions worldwide each year. Moreover, the corresponding technology became more accessible for teachers and students to use it in their classrooms and has arguably a high potential to impact the nature of science education at all levels. One skill, which is said to be benefitting from educational robotics, is problem solving. This thesis understands problem solving skills as engineering design skills (in contrast to scientific inquiry). Problem solving skills count as important skills as demanded by industry leaders and policy makers in the context of 21st century skills, which are relevant for students to be well-prepared for their future working life in today's world, shaped by an ongoing process of automation, globalization, and digitalization. The overall aim of this thesis is to try to answer the question if educational robotics competitions such as the World Robot Olympiad (WRO) have a positive impact on students' learning in terms of their problem solving skills (as part of 21st century skills). In detail, this thesis focuses on a) if students can improve their problem solving skills through participation in educational robotics competitions, b) how this skill development is accomplished, and c) the teachers' support of their students during their learning process in the competition. The corresponding empirical studies were conducted throughout the seasons of 2018 and 2019 of the WRO in Germany. The results show overall positive effects of the participation in the WRO on students' learning of problem solving skills. They display an increase of students' problem solving skills, which is not moderated by other variables such as the competition's category or age group, the students' gender or experience, or the success of the teams at the competition. Moreover, the results indicate that students develop their problem solving skills by using a systematic engineering design process and sophisticated problem solving strategies. Lastly, the teacher's role in the educational robotics competitions as manager and guide (in terms of the constructionist learning theory) of the students' learning process (especially regarding the affective level) is underlined by the results of this thesis. All in all, this thesis contributes to the research gap concerning the lack of systematic evaluation of educational robotics to promote students' learning by providing more (methodologically) sophisticated research on this topic. Thereby, this thesis follows the call for more rigorous (quantitative) research by the educational robotics community, which is necessary to validate the impact of educational robotics.}, subject = {Fachdidaktik}, language = {en} } @phdthesis{Pawellek2021, author = {Pawellek, Ruben}, title = {Charged Aerosol Detector Performance Evaluation and Development of Optimization Strategies for the Analysis of Amino Acids}, doi = {10.25972/OPUS-24319}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-243197}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {The charged aerosol detector (CAD) is an aerosol-based detector employed in liquid chromatography which has become established in the field of pharmaceutical analysis due to its outstanding performance characteristics, e.g. the almost uniform response for nonvolatile analytes. Owing to its principle of detection, the response of the CAD depends on the volatility of a compound and is inherently nonlinear. However, the newly implemented instrumental settings evaporation temperature and power function value (PFV) are valuable tools to overcome some of these drawbacks and can even enhance the detector's capabilities when adjusted properly. This thesis aimed to evaluate the impact of the new instrumental settings on the CAD performance. Additionally, the influence of modern separation techniques for small polar compounds on the CAD was assessed and the applicability of hyphenated UV-CAD techniques explored. The optimization strategies derived from the evaluation procedures and the conjunction of the instrumental and chromatographic techniques investigated were utilized for the challenging impurity profiling of amino acids and amino acid-like drugs. The results of the method validation procedures confirmed the broad applicability of the CAD in the pharmaceutical analysis of nonvolatile compounds, supported by satisfactory sensitivity and reproducibility for meeting the regulatory requirements with respect to the ICH guidelines Q2(R1) and Q3A(R2). The limits of applicability include the analysis of semivolatile compounds, and the method transfer between current and legacy CAD models. Further advances in the definition and standardization of allowed ranges for the instrumental settings and the establishment of general optimization procedures in the method development could lead to a more widespread use of the detection technique in compendial methods.}, subject = {Instrumentelle Analytik}, language = {en} } @phdthesis{Macher2021, author = {Macher, Sven}, title = {On the Effects of Moisture on Polymer-Based Electrochromic Devices}, doi = {10.25972/OPUS-24240}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-242407}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {The present work builds on a conjugated electrochromic polymer with a highly transmissive and colorless bright state and its application in electrochromic devices. The main body of this work focuses on the investigation of the influence of moisture on electrochromic devices and solutions to overcome possible degradation of these devices due to moisture ingress. Firstly, a series of EDOT derivatives with a terminal double bond in the lateral sidechain to potentially achieve a highly transmissive and fully colorless bright state was investigated. All of the EDOT derivatives were electrochemically polymerized and characterized by means of (in-situ) spectroelectrochemistry. The results highlight the dramatic influence of the terminal double bond on the improved visible light transmittance and color neutrality in the bright state. After detailed evaluation and comparison, the best performing compound, which contains a hexenyl sidechain (PEDOT-EthC6), was scaled-up by changing the deposition technique from an electrochemical to a chemical in-situ polymerization process on a R2R-pilot line in an industrially relevant environment. The R2R-processed PEDOTEthC6 half-cells were characterized in detail and provide enhanced electrochromic properties in terms of visible light transmittance and color neutrality in the bright state as well as short response times, improved contrast ratio, coloration efficiency and cycling stability (10 000 cycles).[21] In a second step, the novel PEDOT-EthC6 electrochromic polymer was combined with a Prussian Blue counter electrode and a solid polymer electrolyte to form an all-solid-sate ECDs based on complementary switching electrodes and PET-ITO as flexible substrates. The fabricated ECDs were optically and spectroelectrochemically characterized. Excellent functionality of the S2S-processed flexible ECDs was maintained throughout 10 000 switching cycles under laboratory conditions. The ECDs offer enhanced electrochromic properties in terms of visible light transmittance change and color neutrality in the bright state as well as contrast ratio, coloration efficiency, cycling stability and fast response times. Furthermore, the final device assembly was transferred from a S2S-process to a continuous R2R-lamination process.[238] In a third step, the PEDOT-EthC6/PB-based ECDs were submitted to conscious environmental aging tests. The emphasis of the research presented in this work, was mainly put at the influence of moisture and possible failure mechanisms regarding the PEDOT-EthC6/PB based ECDs. An intense brown coloration of the electrodes was observed while cycling the ECDs in humid atmospheres (90\% rH) as a major degradation phenomenon. The brown coloration and a thereby accompanied loss of conductivity of the PET-ITO substrates was related to significant degradation of the ITO layers, inserted as the conductive layers in the flexible ECDs. A dissolution of the ITO thin films and formation of metallic indium particles on the surface of the ITO layers was observed that harmed the cycling stability enormously. The conductive layers of the aged ECDs were investigated by XRD, UV-Vis, SEM and spectroelectrochemical measurements and validated the supposed irreversible reduction of the ITO layers.[279] In the absence of reasonable alternatives to PET-ITO for flexible (R2R-processed) ECDs, it is also important to investigate measures to avoid the degradation of ECDs. This is primarily associated with the avoidance of appropriate electrode potentials necessary for ITO reduction in humid atmospheres. As an intrinsic action point, the electrode potentials were investigated via electrochemical measurements in a three-electrode setup of an all-solid-state ECD. Extensive knowledge on the electrode potentials allowed the voltage-induced degradation of the ITO in flexible ECDs to be avoided through the implementation of an unbalanced electrode configuration (charge density ratio of working and counter electrode). It was possible to narrow the overall operational voltage window to an extent in which irreversible ITO reduction no longer occurs. The unbalanced electrode configuration lead to an improved cycling stability without harming other characteristics such as response time and light transmittance change and allows ECD operation in the presence of humidity.[279] The avoidance of the mentioned degradation phenomena is further associated with appropriate sealing methods and materials as well as appropriate electrode and device fabrication processes. Since a variety of sealing materials is commercially available, due to the commercial launch of organic photovoltaic (OPV) and light emitting diodes (OLEDs), the focus in the present work was put to water-free electrode fabrication. As an extrinsic action point, a novel preparation method of a nanoscale PEDOT-EthC6 dispersion based on organic solvents is presented here in a final step. The water-free processing method gives access to straightforward printing and coating processes on flexible PET-ITO substrates and thus represents a promising and simplified alternative to the established PEDOT:PSS. The resulting nano-PEDOT-EthC6 thin films exhibit enhanced color neutrality and transmissivity in the bright state and are comparable to the properties of the in-situ polymerized PEDOT-EthC6 thin films.[280]}, subject = {Elektrochromie}, language = {en} } @phdthesis{Urlaub2021, author = {Urlaub, Jonas}, title = {Development of analytical methods for the quality assessment of mineral oil based excipients and mechanochemically stressed active pharmaceutical ingredients}, doi = {10.25972/OPUS-24346}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-243465}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {For the quality assurance of substances for pharmaceutical use, a variety of analytical techniques are available to address specific analytical problems. In this field of application, liquid chromatography (LC) stands out as the gold standard in the pharmaceutical industry. Various detectors can be employed, which are e.g. based on UV/Vis spectroscopy for the examination of molecules with a chromophore, or mass spectrometry (MS) for structural elucidation of analytes. For the separation of enantiomers, the use of capillary electrophoresis (CE) may be more favorable due to the high separation efficiency and easy-to-use and comparatively inexpensive chiral selectors, in contrast to chiral columns for LC, which are usually very expensive and limited to a restricted number of analytes. For structure elucidation in impurity profiling, one- and multidimensional 1H NMR spectroscopy is a valuable tool as long as the analyte molecule has got nuclei that can be detected, which applies for the magnitude of organic pharmaceutical substances. For the evaluation of the amount of mineral oil aromatic hydrocarbons (MOAH) in various paraffin samples from different suppliers, a straightforward method based on 1H NMR spectroscopy was elaborated. The MOAH/MOSH ratio was used to indicate the amount of MOAH of paraffins and to evaluate the extent of refining. In addition, a representative paraffin sample was measured without sample solvent at high temperatures (about 340 K) to avoid the interfering residual solvent signals in the spectral regions of interest. The results of both methods were in good accordance. Moreover, the 1H NMR results were complemented with the UV measurements from the purity testing of paraffins according to the DAB 8. Correlations of the NMR and UV spectroscopic data indicated a linear relationship of both methods for the determination of MOAH in paraffins. Finally, the 1H NMR data was evaluated by principal component analysis (PCA) to explore differences within the paraffin samples and the spectral regions in the 1H NMR spectrum which are responsible for the formation of groups. It could be found that most variation is due to the MOSH of the paraffins. The PCA model was capable of differentiating between soft, liquid and solid paraffins on the one hand and between natural and synthetic liquid paraffins on the other hand. The impurity profiling of L-ascorbic acid 2-phosphate magnesium (A2PMg) was performed by means of one- and two-dimensional NMR spectroscopy. Several ethylated impurities could be detected, which were likely to be formed during synthesis of A2PMg. The structures of two of the ethylated impurities were identified as ascorbic acid 2-phosphate ethyl ester and ethanol, (residual solvent from synthesis). NMR spectroscopic studies of the fractions obtained from preparative HPLC of A2PMg revealed two additional impurities, which were identified as phosphorylated derivatives of ascorbic acid, ascorbic acid 3,5-phosphate and ascorbic acid 5-phosphate. Solid state mechanochemistry as an alternative approach for stress testing was applied on the drug substances S-Ibuprofen (Ibu) and Clopidogrel (CLP) using a ball mill, in order to study their degradation profile: First, the isomerization of S-Ibu was investigated, which was stressed in the solid state applying several milling frequencies and durations under basic, acidic and neutral conditions. For the separation of Ibu enantiomers, a chiral CE method was developed and validated according to ICH Q2(R1). It was found that S-Ibu is overall very stable to isomerization; it shows minor conversion into the R-enantiomer under basic environment applying long milling times and high frequencies. Last, the degradation profile of clopidogrel hydrogen sulfate (CLP) was investigated, which was stressed in the solid state under various oxidative conditions. An already existing HPLC-UV method was adjusted to sufficiently separate the degradation products, which were characterized by means of UV and MS/(MS) detection. Most of the degradation products identified were already reported to result from conventional CLP stress tests. The degradation profile of CLP was mainly influenced by the material of the milling jar and the type of catalyst used.}, subject = {HPLC}, language = {en} } @phdthesis{Baluapuri2021, author = {Baluapuri, Apoorva}, title = {Molecular Mechanisms of MYC's impact on Transcription Elongation}, doi = {10.25972/OPUS-24380}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-243806}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {Expression of the MYC oncoprotein, which binds the DNA at promoters of most transcribed genes, is controlled by growth factors in non-tumor cells, thus stimulating cell growth and proliferation. Here in this thesis, it is shown that MYC interacts with SPT5, a subunit of the RNA polymerase II (Pol II) elongation factor DSIF. MYC recruits SPT5 to promoters of genes and is required for its association with Pol II. The transfer of SPT5 is mediated by CDK7 activity on TFIIE, which evicts it from Pol II and allows SPT5 to bind Pol II. MYC is required for fast and processive transcription elongation, consistent with known functions of SPT5 in yeast. In addition, MYC increases the directionality of promoters by stimulating sense transcription and by suppressing the synthesis of antisense transcripts. The results presented in this thesis suggest that MYC globally controls the productive assembly of Pol II with general elongation factors to form processive elongation complexes in response to growth-factor stimulation of non-tumour cells. However, MYC is found to be overexpressed in many tumours, and is required for their development and progression. In this thesis it was found that, unexpectedly, such overexpression of MYC does not further enhance transcription but rather brings about squelching of SPT5. This reduces the processivity of Pol II on selected set of genes that are known to be repressed by MYC, leading to a decrease in growth-suppressive gene transcription and uncontrolled tumour growth}, language = {en} } @phdthesis{Jonas2021, author = {Jonas, Franziska}, title = {CNS1-dependency of \(in\) \(vivo\) peptide-induced CD4\(^+\)Foxp3\(^+\) regulatory T cells}, doi = {10.25972/OPUS-24388}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-243887}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {CD4+Foxp3+ Tregs can be induced in vitro by TGF-b stimulation. Here, CNS1 deficient CD4+ T cells were found to show compromised Foxp3 upregulation in vitro compared to CNS1 WT CD4+ T cells. Moreover, we could demonstrate that antigen-specific CD4+Foxp3+ Tregs can be induced in vivo by tolerogenic antigen stimulation. Parenteral application of agonist BDC2.5 mimetope induced Foxp3 expression in CD4+ BDC2.5 tg cells. We could show that induction of Foxp3 expression by tolerogenic peptide stimulation is impaired in CNS1 deficient CD4+ BDC2.5 tg cells compared to CNS1 WT CD4+ BDC2.5 tg controls. These results indeed indicate that in vivo induced Tregs share mechanistic characteristics with naturally occurring pTregs. Additional in vivo experiments with blocking monoclonal anti-TGF-b demonstrated that high dosage TGF-b blockade abrogated peptide-induced Foxp3 expression in CNS1 WT BDC2.5 tg CD4+ cells, akin to what is seen for impaired Foxp3 upregulation in peptide-stimulated CNS1 KO BDC2.5 tg CD4+ cells without anti-TGF-b-treatment. Adoptive transfer of CD4+CD25- T cells in T cell deficient recipients dramatically increased CD4+Foxp3+ Treg frequencies in both CNS1 WT CD4+ and CNS1 KO CD4+ donor cells. Despite an initially lower increase in Foxp3 expression in CNS1 KO donor cells compared to CNS1 WT donor cells early after transfer, in this setting impaired Treg induction in CNS1 deficient cells was not preserved over time. Consequently, diabetes onset and progression were indistinguishable between mice that received CNS1 WT or CNS1 KO donor cells. Additional Foxp3 induction by peptide stimulation of immunodeficient recipients after transfer of CNS1 WT BDC2.5. tg or CNS1 KO BDC2.5 tg donor cells was not detectable.}, subject = {Regulatorischer T-Lymphozyt}, language = {en} } @phdthesis{RamaniMohan2021, author = {Ramani Mohan, Ramkumar}, title = {Effect of Mechanical Stress On Stem Cells to Improve Better Bone Regeneration}, doi = {10.25972/OPUS-24013}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-240134}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {Critical size bone defects and nonunion fractures remain difficult to treat. Although cell-loaded bone substitutes have improved bone ingrowth and formation, the lack of methods for achieving viability and the uniform distribution of cells in the scaffold limits their use as bone grafts. In addition, the predominant mechanical stimulus that drives early osteogenic cell maturation has not been clearly identified. Further, it is challenging to evaluate mechanical stimuli (i.e., deformation and fluid-flow-induced shear stress) because they are interdependent. This thesis compares different mechanical stimuli applied to cell-seeded scaffolds to develop bone grafts efficiently for the treatment of critical size bone defects. It also seeks to understand how deformation strain and interstitial fluid-flow-induced shear stress promote osteogenic lineage commitment. In this thesis, different scaffolds were seeded with primary human bone marrow mesenchymal stem cells (BM-MSCs) from different donors and subjected to static and dynamic culture conditions. In contrast with the static culture conditions, homogenous cell distributions were accomplished under dynamic culture conditions. Additionally, the induction of osteogenic lineage commitment without the addition of soluble factors was observed in the bioreactor system after one week of cell culture. To determine the role of mechanical stimuli, a bioreactor was developed to apply mechanical deformation force to a mesenchymal stem sell (MSC) line (telomerase reverse transcriptase (TERT)) expressing a strain-responsive AP-1 luciferase reporter construct on porous scaffolds. Increased luciferase expression was observed in the deformation strain compared with the shear stress strain. Furthermore, the expression of osteogenic lineage commitment markers such as osteonectin, osteocalcin (OC), osteopontin, runt-related transcription factor 2 (RUNX2), alkaline phosphate (AP), and collagen type 1 was significantly downregulated in the shear stress strain compared with the deformation strain. These findings establish that the deformation strain was the predominant stimulus causing skeletal precursors to undergo osteogenesis in earlier stages of osteogenic cell maturation. Finally, these findings were used to develop a bioreactor in vitro test system in which the effect of medication on osteoporosis could be tested. Primary human BM-MSCs from osteoporotic donors were subjected to strontium ranelate (an osteoporotic drug marketed as Protelos®). Increased expression of collagen type 1 and calcification was seen in the drugtreated osteoporotic stem cells compared with the nondrug-treated osteoporotic stem cells. Thus, this bioreactor technology can easily be adapted into an in vitro osteoporotic drug testing system.}, language = {en} } @phdthesis{Popp2021, author = {Popp, Christina}, title = {Evolution of antifungal drug resistance of the human-pathogenic fungus \(Candida\) \(albicans\)}, doi = {10.25972/OPUS-24351}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-243515}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {Infections with the opportunistic yeast Candida albicans are frequently treated with the first-line drug fluconazole, which inhibits ergosterol biosynthesis. An alarming problem in clinics is the development of resistances against this azole, especially during long-term treatment of patients. Well-known resistance mechanisms include mutations in the zinc cluster transcription factors (ZnTFs) Mrr1 and Tac1, which cause an overexpression of efflux pump genes, and Upc2, which results in an overexpression of the drug target. C. albicans strains with such gain-of-function mutations (GOF) have an increased drug resistance conferring a selective advantage in the presence of the drug. It was previously shown that this advantage comes with a fitness defect in the absence of the drug. This was observed in different conditions and is presumably caused by a deregulated gene expression. One aim of the present study was to examine whether C. albicans can overcome the costs of drug resistance by further evolution. Therefore, the relative fitness of clinical isolates with one or a combination of different resistance mutations in Mrr1, Tac1 and/or Upc2 was analyzed in competition with the matched fluconazole-susceptible partner. Most fluconazole-resistant isolates had a decreased fitness in competition with their susceptible partner in vitro in rich medium. In contrast, three fluconazole-resistant strains with Mrr1 resistance mutations did not show a fitness defect in competition with their susceptible partner. In addition, the fitness of four selected clinical isolate pairs was examined in vivo in mouse models of gastrointestinal colonization (GI) and disseminated infection (IV). In the GI model all four fluconazole-resistant strains were outcompeted by their respective susceptible partner. In contrast, in the IV model only one out of four fluconazole-resistant isolates did show a slight fitness defect in competition with its susceptible partner during infection of the kidneys. It can be stated, that in the present work the in vitro fitness did not reflect the in vivo fitness and that the overall fitness was dependent on the tested conditions. In conclusion, C. albicans cannot easily overcome the costs of drug resistance caused by a deregulated gene expression. In addition to GOFs in Mrr1, Tac1 and Upc2, resistance mutations in the drug target Erg11 are a further key fluconazole resistance mechanism of C. albicans. Clinical isolates often harbor several resistance mechanisms, as the fluconazole resistance level is further increased in strains with a combination of different resistance mutations. In this regard, the question arises of how strains with multiple resistance mechanisms evolve. One possibility is that strains acquire mutations successively. In the present study it was examined whether highly drug-resistant C. albicans strains with multiple resistance mechanisms can evolve by parasexual recombination as another possibility. In a clonal population, cells with individually acquired resistance mutations could combine these advantageous traits by mating. Thereupon selection could act on the mating progeny resulting in even better adapted derivatives. Therefore, strains heterozygous for a resistance mutation and the mating type locus (MTL) were grown in the presence of fluconazole. Derivatives were isolated, which had become homozygous for the resistance mutation and at the same time for the MTL. This loss of heterozygosity was accompanied by increased drug resistance. In general, strains which are homozygous for one of both MTL configurations (MTLa and MTLα) can switch to the opaque phenotype, which is the mating-competent form of the yeast, and mate with cells of the opposite MTL. In the following, MTLa and MTLα homozygous strains in the opaque phenotype were mated in all possible combinations. The resulting mating products with combined genetic material from both parents did not show an increased drug resistance. Selected products of each mating cross were passaged with stepwise increasing concentrations of fluconazole. The isolated progeny showed high levels of drug resistance and loss of wild-type alleles of resistance-associated genes. In conclusion, selective pressure caused by fluconazole exposure selects for resistance mutations and at the same time induces genomic rearrangements, resulting in mating competence. Therefore, in a clonal population, cells with individually acquired resistance mutations can mate with each other and generate mating products with combined genetic backgrounds. Selection can act on these mating products and highly drug-resistant und thus highly adapted derivatives can evolve as a result. In summary, the present study contributes to the current understanding of the evolution of antifungal drug resistance by elucidating the effect of resistance mutations on the fitness of the strains in the absence of the drug selection pressure and investigates how highly drug-resistant strains could evolve within a mammalian host.}, subject = {Evolution}, language = {en} } @phdthesis{Shen2021, author = {Shen, Chia-An}, title = {Dicyanomethylene Squaraines: Aggregation and G-Quadruplex Complexation}, doi = {10.25972/OPUS-24359}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-243599}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {Squaraine dyes have attracted more attention in the past decade due to their strong and narrow absorption and fluorescence along with the easily functionalized molecular structure. One successful approach of core functionalization is to replace one oxygen of the squaric carbonyl group with a dicyanomethylene group, which shifts the absorption and emission into the near infrared (NIR) region and at the same time leads to a rigid, planar structure with C2v symmetry. However, such squaraines tend to aggregate cofacially in solution due to dispersion forces and dipole-dipole interactions, usually leading to H-type exciton coupling with undesired blue-shifted spectrum and quenched fluorescence. Therefore, the goal of my research was the design of dicyanomethylene-substituted squaraine dyes that self-assemble into extended aggregates in solution with J-type coupling, in order to retain or even enhance their outstanding optical properties. Toward this goal, bis(squaraine) dyes were envisioned with two squaraine units covalently linked to trigger a slip-stacked packing motif within the aggregates to enable J-type coupling. In my first project, bis(squaraine) dye BisSQ1 was synthesized, in which two dicyanomethylene squaraine chromophores are covalently linked. Concentration and temperature-dependent UV/Vis/NIR spectroscopy experiments reveal that BisSQ1 undergoes cooperative self-assembly resulting in J-type aggregates in a solvent mixture of toluene/1,1,2,2-tetrachloroethane (TCE) (98:2, v/v). The J type exciton coupling is evident from the significantly red shifted absorption maximum at 886 nm and the fluorescence peak at 904 nm. In conclusion, this was a first example to direct squaraine dye aggregation in solution to the more desired slip-stacked packing leading to J-type exciton coupling by simply connecting two dyes in a head-to-tail bis chromophore structure. Connecting two squaraine dyes with an additional phenylene spacer (BisSQ2) leads to two different polymorphs with very distinct absorption spectra upon cooling down a solution of BisSQ2 in a solvent mixture of toluene/TCE (98:2, v/v) with different rates. Accordingly, rapid cooling resulted in rigid helical nanorods with an absorption spectrum showing a panchromatic feature, while slow cooling led to a sheet-like structure with a significant bathochromic shift in the absorption spectrum. It was discovered that the conventional molecular exciton model failed to explain the panchromatic absorption features of the nanorods for the given packing arrangement, therefore more profound theoretical investigations based on the Essential States Model (ESM) were applied to unveil the importance of intermolecular charge transfer (ICT) to adequately describe the panchromatic absorption spectrum. Moreover, the red-shift observed in the spectrum for the sheet-like structure can be assigned to the interplay of Coulomb coupling and ICT-mediated coupling. Furthermore, the same bis-chromophore strategy was adopted for constructing an NIR-II emitter with a bathochromically-shifted spectrum. In chloroform, BisSQ3 exhibits an absorption maximum at 961 nm with a significant bathochromic shift (1020 cm-1) compared to the reference mono-squaraine SQ, indicating intramolecular J-type coupling via head-to-tail arrangement of two squaraine dyes. Moreover, BisSQ3 shows a fluorescence peak at 971 nm with a decent quantum yield of 0.33\%. In less polar toluene, BisSQ3 self-assembles into nanofibers with additional intermolecular J-type coupling, causing a pronounced bathochromic shift with absorption maximum at 1095 nm and a fluorescence peak at 1116 nm. Thus, connecting two quinoline-based squaraines in a head-to-tail fashion leads to not only intra-, but also intermolecular J-type exciton coupling, which serves as a promising strategy to shift the absorption and emission of organic fluorophores into the NIR-II window while retaining decent quantum yields. In conclusion, my research illustrates based on squaraine dyes how a simple modification of the molecular structure can significantly affect the aggregation behavior and further alter the optical properties of dye aggregates. Elongated supramolecular structures based on dicyanomethylene substituted squaraine dyes were successfully established by covalently linking two squaraine units to form a bis-chromophore structure. Then, a simple but efficient general approach was established to direct squaraine dye aggregation in solution to the more desired slip-stacked packing leading to J-type exciton coupling by directly connecting two squaraine dyes in a head-to-tail fashion without spacer units. Moreover, the additional spacer between the squaraine dyes in BisSQ2 allowed different molecular conformations, which leads to two different morphologies depending on the cooling rates for a hot solution. Hence, this is a promising strategy to realize supramolecular polymorphism. In general, it is expected that the concept of constructing J-aggregates by the bis-chromophore approach can be extended to entirely different classes of dyes since J-aggregates possess a variety of features such as spectral shifts into the NIR window, fluorescence enhancement, and light harvesting, which are commonly observed and utilized for numerous fundamental studies and applications. Moreover, the insights on short-range charge transfer coupling for squaraine dyes is considered of relevance for all materials based on alternating donor-acceptor π-systems. The panchromatic spectral feature is in particular crucial for acceptor-donor-acceptor (ADA) dyes, which are currently considered as very promising materials for the development of bulk heterojunction solar cells.}, subject = {Squaraine}, language = {en} } @phdthesis{Roeschert2021, author = {R{\"o}schert, Isabelle}, title = {Aurora-A prevents transcription-replication conflicts in MYCN-amplified neuroblastoma}, doi = {10.25972/OPUS-24303}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-243037}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {Neuroblastoma is the most abundant, solid, extracranial tumor in early childhood and the leading cause of cancer-related childhood deaths worldwide. Patients with high-risk neuroblastoma often show MYCN-amplification and elevated levels of Aurora-A. They have a low overall survival and despite multimodal therapy options a poor therapeutic prognosis. MYCN-amplified neuroblastoma cells depend on Aurora-A functionality. Aurora-A stabilizes MYCN and prevents it from proteasomal degradation by competing with the E3 ligase SCFFBXW7. Interaction between Aurora-A and MYCN can be observed only in S phase of the cell cycle and activation of Aurora-A can be induced by MYCN in vitro. These findings suggest the existence of a profound interconnection between Aurora-A and MYCN in S phase. Nevertheless, the details remain elusive and were investigated in this study. Fractionation experiments show that Aurora-A is recruited to chromatin in S phase in a MYCN-dependent manner. Albeit being unphosphorylated on the activating T288 residue, Aurora-A kinase activity was still present in S phase and several putative, novel targets were identified by phosphoproteomic analysis. Particularly, eight phosphosites dependent on MYCN-activated Aurora-A were identified. Additionally, phosphorylation of serine 10 on histone 3 was verified as a target of this complex in S phase. ChIP-sequencing experiments reveal that Aurora-A regulates transcription elongation as well as histone H3.3 variant incorporation in S phase. 4sU-sequencing as well as immunoblotting demonstrated that Aurora-A activity impacts splicing. PLA measurements between the transcription and replication machinery revealed that Aurora-A prevents the formation of transcription-replication conflicts, which activate of kinase ATR. Aurora-A inhibitors are already used to treat neuroblastoma but display dose-limiting toxicity. To further improve Aurora-A based therapies, we investigated whether low doses of Aurora-A inhibitor combined with ATR inhibitor could increase the efficacy of the treatment albeit reducing toxicity. The study shows that the combination of both drugs leads to a reduction in cell growth as well as an increase in apoptosis in MYCN-amplified neuroblastoma cells, which is not observable in MYCN non-amplified neuroblastoma cells. This new approach was also tested by a collaboration partner in vivo resulting in a decrease in tumor burden, an increase in overall survival and a cure of 25\% of TH-MYCN mice. These findings indicate indeed a therapeutic window for targeting MYCN-amplified neuroblastoma.}, subject = {Neuroblastom}, language = {en} } @phdthesis{Busch2021, author = {Busch, Albert Franz Jakob}, title = {Modification of angiogenesis to abrogate abdominal aortic aneurysm growth}, doi = {10.25972/OPUS-24135}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-241356}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {Introduction: Abdominal aortic aneurysm (AAA) is a pathological saccular enlargement most often of the infrarenal aorta. Eventual rupture is fatal, making preemptive surgical therapy upon a diameter threshold of >50mm the treatment of choice. The pathophysiology, especially the initial trigger aortic remodeling is still largely unknown. However, some characteristic features involved in aneurysm growth have been established, such as medial angiogenesis, low-grade inflammation, vascular smooth muscle cell (VSMC) phenotype switch, extracellular remodeling, altered hemodynamics and an eventual humoral immune answer. Currently, no medical treatment options are available. RNA therapeutics and drug repurposing offer new possibilities to overcome this shortage. Using such to target angiogenesis in the aneurysm wall and investigate their potential mechanisms is the aim of this thesis. Material and Methods: We test our hypothesis by targeting the long non-coding RNA H19 and re-use the anti-cancer drug Lenvatinib in two murine inducible AAA models and one preclinical large animal model in the LDLR-/- pig. Furthermore, a H19-/- mouse is included to verify the results. AAA and control samples from a human biobank along with a primary human cell culture are used to verify results ex vivo by qPCR, WesternBlot, live cell imaging, histo- and immunohistochemistry along with gene array analysis, RNA knockdown, pull-down- and promotor assays. Results: H19 is significantly upregulated in AAA mice models and its knockdown limited aneurysm growth. It is well known that H19 interacts with several transcription factors. We found that cytoplasmic interaction between H19 and hypoxia-inducible factor 1-alpha (HIF1α) increased apoptosis in cultured SMCs associated with sequential p53 stabilization. In contrast, the knockdown of H19 was associated with markedly decreased apoptotic cell rates. Our data underline that HIF1α was essential in mediating the pro-apoptotic effects of H19. Secondly, Lenvatinib was applied both systemically and locally by endovascular means in mice with an established AAA. The drug significantly halted aneurysm growth and array analysis revealed myosin heavy chain 11 (MYH11) as the most differentially regulated target. This was shown to be up regulated after Lenvatinib treatment of primary AAA smooth muscle cells suggesting a salvage mechanism to obtain a contractile phenotype based on gene expression and immunohistochemistry. The same results were shown upon a local endovascular Lenvatinib-coated balloon angioplasty in the established aneurysmatic lesion of a novel atherosclerotic LDLR-/- Yucatan minipig model. Decreased phosphorylation of extracellular-signal regulated kinases 1-2 (ERK1-2) is the downstream effect of Lenvatinib-specific blockage of the vascular endothelial growth factor receptor (VEGFR2). Conclusion: Taking into account the heterogeneity of the disease, inhibition of VSMC phenotype switch, extracellular remodeling and angiogenesis seem promising targets in some if not all AAA patients. Together with surveillance and surgical therapy, these new non-invasive treatment strategies would allow for a more personalized approach to treat this disease.}, subject = {Aortenaneurysma}, language = {en} } @phdthesis{Liu2021, author = {Liu, Zhiqiang}, title = {Fluorinated Aryl Boronates as Units in Organic Synthesis}, doi = {10.25972/OPUS-24576}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-245769}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {It is generally acknowledged that polyfluoroarenes are important fluorinated structural units for various organic molecules, such as pharmaceuticals, agrochemicals, and organic materials. Polyfluorinated aryl alkynes and alcohols are also powerful building blocks in chemical synthesis because of their versatility to be transformed into various useful molecules and also their ubiquity in natural product synthesis. Efficient methods for the synthesis of polyfluorinated aryl alkynes and alcohols are presented in Chapter 2 and Chapter 3. In addition, 3-amino-indoles have found a broad applications in medicinal chemistry as effective anticancer agents, compounds with analgesic properties and can function as potent inhibitors of tubulin polymerization, and agents for the prevention of type II diabetes. A simple method for the synthesis of 3-amino-indoles via the annulation reaction of polyfluorophenylboronates with DMF is reported in Chapter 4. Chapter 2 In Chapter 2, a mild process for the copper-catalyzed oxidative cross-coupling of electron-deficient polyfluorophenylboronate esters with terminal alkynes (Scheme S-1) is reported. This method displays good functional group tolerance and broad substrate scope, generating cross-coupled alkynyl(fluoro)arene products in moderate to excellent yields. This copper-catalyzed reaction was conducted on a gram scale to generate the corresponding product in good yield (72\%). Scheme S-1. Copper-catalyzed oxidative cross-coupling of terminal alkynes with polyfluorophenylboronate esters. Based on previous reports and the aforementioned observations, a plausible catalytic cycle for this oxidative cross-coupling reaction is shown in Scheme S-2. The first step involves the addition of an alkynyl anion to Cu leading to the formation of alkynylcopper(II) species B. Subsequent transmetalation between ArFBpin and intermediate B occurs to form intermediate C. The desired product 3a is generated by eductive elimination. Finally, the oxidation of Cu(0) to Cu(II) with DDQ and Ag2O regenerates A to complete the catalytic cycle. Scheme S-2. Proposed mechanism of copper(II)-catalyzed oxidative cross-coupling between terminal alkynes and polyfluorophenylboronate esters. Chapter 3 In Chapter 3, A convenient and efficient protocol for the transition metal-free 1,2-addition of polyfluoroaryl boronate esters to aldehydes and ketones is reported, which provides secondary alcohols, tertiary alcohols, and ketones (Scheme S-3). The distinguishing features of this procedure include the employment of commercially available starting materials and the broad scope of the reaction with a wide variety of carbonyl compounds giving moderate to excellent yields. Scheme S-3. Base-promoted 1,2-addition of polyfluorophenylboronates to aldehydes and ketones. Control experiments were carried out to gain insight into the reaction mechanism. The reaction of 2a with pentafluorobenzene 5 under standard conditions was examined, yet 3a was not formed in any detectable amounts (Scheme S-4a), indicating that the C-Bpin moiety is essential and deprotonation of the fluoroarene or nucleophilic attack at the fluoroarene by the base is not a plausible pathway. Interestingly, for the standard reaction between 1a and 2a, the yield dropped dramatically if 18-crown-6 ether and K2CO3 were added (Scheme S-4b). This experimental result indicates that the presence of the potassium ion plays a crucial role for the outcome of the reaction. Furthermore, if the reaction of 1a and 2a was performed in the presence of only a catalytic amount of K2CO3 (20 mol\%) (Scheme S-4c), reaction rates were reduced, and a week was required to produce 3a in good yield. This finding again indicates that the potassium ion (or the base) plays an important role in the reaction. Substituting ortho-fluorines by ortho-chlorines, using either C6Cl5Bpin 2,6-dichlorophenyl-1-Bpin as substrates, did not yield any product as shown by in situ GCMS studies. Scheme S-4. Control experiments. Based on DFT calculations, a mechanism for the 1,2-addition of polyfluorophenylboronates to aryl aldehydes in the presence of K2CO3 as base is proposed, as shown in Scheme S-5. K2CO3 interacts with the Lewis-acidic Bpin moiety of substrate 1 to generate base adduct A, which weakens the carbon-boron bond and ultimately cleaves the BC bond along with attachment of a potassium cation to the aryl group. The resulting ArF- anion adduct B undergoes nucleophilic attack at the aldehyde carbon atom of substrate 2 to generate methanolate C. The methanolate oxygen atom then attacks the electrophilic Bpin group to obtain compound D. Transfer of K2CO3 from intermediate D to the boron atom of the more Lewis-acidic polyfluorophenyl-Bpin 1 finally closes the cycle and regenerates complex A. Thus, the primary reaction product is the O-borylated addition product E, which was detected by HRMS and NMR spectroscopy for the perfluorinated derivative. Scheme S-5. Proposed mechanism of the 1,2-addition of polyfluorophenylboronates to aldehydes and ketones. Chapter 4 Chapter 4 presents a novel protocol for the transition metal-free addition and annulation of polyfluoroarylboronate esters to DMF, which provides 3-aminoindoles and tertiary amines in moderate to excellent yields (Scheme S-6). Scheme S-6. Annulation and addition reactions of polyfluorophenylboronates with DMF. While exploring the application of this strategy in synthesis, perfluorophenylBpin reacted smoothly with ethynylarenes and DMF to afford propargylamines with moderate to excellent yields (Scheme S-7). Scheme S-7. Three-component cross-coupling reaction for the synthesis of propargylamines.}, subject = {Fluorinated Aryl Boronates}, language = {en} } @phdthesis{Koeberle2021, author = {K{\"o}berle, Philipp}, title = {High-resolution ultrasound for the identification of pathological patterns in patients with polyneuropathies and amyotrophic lateral sclerosis}, doi = {10.25972/OPUS-24580}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-245800}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {Neuropathies are a group of potentially treatable diseases with an often disabling and restricting course. Amyotrophic lateral sclerosis (ALS) is a lethal disease without causal treatment possibilities. The objective of this study was to examine the diagnostic utility of HRUS for the differentiation of subtypes of axonal and demyelinating neuropathies and to investigate its utility for the sonological differentiation of ALS. The hypothetical statement that neuropathy causes enlargement of peripheral nerves compared to healthy controls proved to be right, but the adjunctive assumption that ALS does not cause enlargement of peripheral nerves proved to be wrong - in patients with ALS slight enlargement of peripheral nerves was visible as well. The statement that nerve enlargement can be detected by measurement of the cross-sectional area (CSA) and the longitudinal diameter (LD) with comparable results proved to be right, but the enlargement was slightly less present by measurement of the LD. The statement that axonal and demyelinating neuropathies show distinct patterns of nerve enlargement must be answered differentiated: The comparison between axonal and demyelinating neuropathies showed a stronger nerve enlargement in patients with demyelinating neuropathies than in patients with axonal neuropathies at proximal nerve segments of upper extremities. In the comparison of diagnose-defined subgroups of inflammatory demyelinating neuropathies a respective specific pattern of nerve enlargement was visible. However, remarkable in this context was the strong nerve enlargement found in patients with NSVN, which is classified as an axonal neuropathy. Stratification for specific findings in nerve biopsy did not lead to constructive differences in comparison between the different groups. To sum up, HRUS showed to provide a useful contribution in the diagnostic process of neuropathies and ALS but needs to be integrated in a multimodal diagnostic approach.}, subject = {Polyneuropathie}, language = {en} } @phdthesis{Baumhoer2021, author = {Baumhoer, Celia Am{\´e}lie}, title = {Glacier Front Dynamics of Antarctica - Analysing Changes in Glacier and Ice Shelf Front Position based on SAR Time Series}, doi = {10.25972/OPUS-24581}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-245814}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {The Antarctic Ice Sheet stores ~91\% of the global ice volume which is equivalent to a sea-level rise of 58.3 meters. Recent disintegration events of ice shelves and retreating glaciers along the Antarctic Peninsula and West Antarctica indicate the current vulnerable state of the Antarctic Ice Sheet. Glacier tongues and ice shelves create a safety band around Antarctica with buttressing effects on ice discharge. Current decreases in glacier and ice shelf extent reduce the effective buttressing forces and increase ice discharge of grounded ice. The consequence is a higher contribution to sea-level rise from the Antarctic Ice Sheet. So far, it is unresolved which proportion of Antarctic glacier retreat can be attributed to climate change and which part to the natural cycle of growth and decay in the lifetime of a glacier. The quantitative assessment of the magnitude, spatial extent, distribution, and dynamics of circum-Antarctic glacier and ice shelf retreat is of utmost importance to monitor Antarctica's weakening safety band. In remote areas like Antarctica, earth observation provides optimal properties for large-scale mapping and monitoring of glaciers and ice shelves. Nowadays, the variety of available satellite sensors, technical advancements regarding spatial resolution and revisit times, as well as open satellite data archives create an ideal basis for monitoring calving front change. A systematic review conducted within this thesis revealed major gaps in the availability of glacier and ice shelf front position measurements despite the improved satellite data availability. The previously limited availability of satellite imagery and the time-consuming manual delineation of calving fronts did neither allow a circum-Antarctic assessment of glacier retreat nor the assessment of intra-annual changes in glacier front position. To advance the understanding of Antarctic glacier front change, this thesis presents a novel automated approach for calving front extraction and explores drivers of glacier retreat. A comprehensive review of existing methods for glacier front extraction ascertained the lack of a fully automatic approach for large-scale monitoring of Antarctic calving fronts using radar imagery. Similar backscatter characteristics of different ice types, seasonally changing backscatter values, multi-year sea ice, and m{\´e}lange made it challenging to implement an automated approach with traditional image processing techniques. Therefore, the present abundance of satellite data is best exploited by integrating recent developments in big data and artificial intelligence (AI) research to derive circum-Antarctic calving front dynamics. In the context of this thesis, the novel AI-based framework "AntarcticLINES" (Antarctic Glacier and Ice Shelf Front Time Series) was created which provides a fully automated processing chain for calving front extraction from Sentinel-1 imagery. Open access Sentinel-1 radar imagery is an ideal data source for monitoring current and future changes in the Antarctic coastline with revisit times of less than six days and all-weather imaging capabilities. The developed processing chain includes the pre-processing of dual-polarized Sentinel-1 imagery for machine learning applications. 38 Sentinel-1 scenes were used to train the deep learning architecture U-Net for image segmentation. The trained weights of the neural network can be used to segment Sentinel-1 scenes into land ice and ocean. Additional post-processing ensures even more accurate results by including morphological filtering before extracting the final coastline. A comprehensive accuracy assessment has proven the correct extraction of the coastline. On average, the automatically extracted coastline deviates by 2-3 pixels (93 m) from a manual delineation. This accuracy is in range with deviations between manually delineated coastlines from different experts. For the first time, the fully automated framework AntarcticLINES enabled the extraction of intra-annual glacier front fluctuations to assess seasonal variations in calving front change. Thereby, for example, an increased calving frequency of Pine Island Glacier and a beginning disintegration of Glenzer Glacier were revealed. Besides, the extraction of the entire Antarctic coastline for 2018 highlighted the large-scale applicability of the developed approach. Accurate results for entire Antarctica were derived except for the Western Antarctic Peninsula where training imagery was not sufficient and should be included in future studies. Furthermore, this dissertation presents an unprecedented record of circum-Antarctic calving front change over the last two decades. The newly extracted coastline for 2018 was compared to previous coastline products from 2009 and 1997. This revealed that the Antarctic Ice Sheet shrank 29,618±1193 km2 in extent between 1997-2008 and gained an area of 7,108±1029 km2 between 2009-2018. Glacier retreat concentrated along the Antarctic Peninsula and West Antarctica. The only East Antarctic coastal sector primarily experiencing calving front retreat was Wilkes Land in 2009-2018. Finally, potential drivers of circum-Antarctic glacier retreat were identified by combining data on glacier front change with changes in climate variables. It was found that strengthening westerlies, snowmelt, rising sea surface temperatures, and decreasing sea ice cover forced glacier retreat over the last two decades. Relative changes in mean air temperature could not be identified as a driver for glacier retreat and further investigations on extreme events in air temperature are necessary to assess the effect of atmospheric forcing on frontal retreat. The strengthening of all identified drivers was closely connected to positive phases of the Southern Annular Mode (SAM). With increasing greenhouse gases and ozone depletion, positive phases of SAM will occur more often and force glacier retreat even further in the future. Within this thesis, a comprehensive review on existing Antarctic glacier and ice shelf front studies was conducted revealing major gaps in Antarctic calving front records. Therefore, a fully automated processing chain for glacier and ice shelf front extraction was implemented to track circum-Antarctic calving front fluctuations on an intra-annual basis. The large-scale applicability was certified by presenting two decades of circum-Antarctic calving front change. In combination with climate variables, drivers of recent glacier retreat were identified. In the future, the presented framework AntarcticLINES will greatly contribute to the constant monitoring of the Antarctic coastline under the pressure of a changing climate.}, language = {en} } @phdthesis{Hammer2021, author = {Hammer, Sebastian Tobias}, title = {Influence of Crystal Structure on Excited States in Crystalline Organic Semiconductors}, doi = {10.25972/OPUS-24401}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-244019}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {This thesis focused on the influence of the underlying crystal structure and hence, of the mutual molecular orientation, on the excited states in ordered molecular aggregates. For this purpose, two model systems have been investigated. In the prototypical donor-acceptor complex pentacene-perfluoropentacene (PEN-PFP) the optical accessibility of the charge transfer state and the possibility to fabricate highly defined interfaces by means of single crystal templates enabled a deep understanding of the spatial anisotropy of the charge transfer state formation. Transferring the obtained insights to the design of prototypical donor-acceptor devices, the importance of interface control to minimize the occurrence of charge transfer traps and thereby, to improve the device performance, could be demonstrated. The use of zinc phthalocyanine (ZnPc) allowed for the examination of the influence of molecular packing on the excited electronic states without a change in molecular species by virtue of its inherent polymorphism. Combining structural investigations, optical absorption and emission spectroscopy, as well as Franck-Condon modeling of emission spectra revealed the nature of the optical excited state emission in relation to the structural \(\alpha \) and \(\beta \) phase over a wide temperature range from 4 K to 300 K. As a results, the phase transition kinetics of the first order \(\alpha \rightarrow \beta\) phase transition were characterized in depth and applied to the fabrication of prototypical dual luminescent OLEDs.}, subject = {Organischer Halbleiter}, language = {en} } @phdthesis{Flederer2021, author = {Flederer, Frank}, title = {CORFU - An Extended Model-Driven Framework for Small Satellite Software with Code Feedback}, doi = {10.25972/OPUS-24981}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-249817}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {Corfu is a framework for satellite software, not only for the onboard part but also for the ground. Developing software with Corfu follows an iterative model-driven approach. The basis of the process is an engineering model. Engineers formally describe the basic structure of the onboard software in configuration files, which build the engineering model. In the first step, Corfu verifies the model at different levels. Not only syntactically and semantically but also on a higher level such as the scheduling. Based on the model, Corfu generates a software scaffold, which follows an application-centric approach. Software images onboard consist of a list of applications connected through communication channels called topics. Corfu's generic and generated code covers this fundamental communication, telecommand, and telemetry handling. All users have to do is inheriting from a generated class and implement the behavior in overridden methods. For each application, the generator creates an abstract class with pure virtual methods. Those methods are callback functions, e.g., for handling telecommands or executing code in threads. However, from the model, one can not foresee the software implementation by users. Therefore, as an innovation compared to other frameworks, Corfu introduces feedback from the user code back to the model. In this way, we extend the engineering model with information about functions/methods, their invocations, their stack usage, and information about events and telemetry emission. Indeed, it would be possible to add further information extraction for additional use cases. We extract the information in two ways: assembly and source code analysis. The assembly analysis collects information about the stack usage of functions and methods. On the one side, Corfu uses the gathered information to accomplished additional verification steps, e.g., checking if stack usages exceed stack sizes of threads. On the other side, we use the gathered information to improve the performance of onboard software. In a use case, we show how the compiled binary and bandwidth towards the ground is reducible by exploiting source code information at run-time.}, subject = {FRAMEWORK }, language = {en} } @phdthesis{Schleier2021, author = {Schleier, Domenik}, title = {Using Photoionization to Investigate Reactive Boron Species and the Kinetics of Hydrocarbon Radicals}, doi = {10.25972/OPUS-24213}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-242137}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {This thesis highlights the importance of isomer-selective approaches for the complete analysis of chemical processes. The method of choice is photoelectron/photoion coincidence spectroscopy, which allows simultaneous detection of electrons and ions coming from a single ionization event. Ionization techniques are sensitive and can record multiple species simultaneously, rendering them ideal tools to probe molecular transformations. Coupling these setups to synchrotron radiation allows one to analyze complex mixtures with isomer selectivity, based on ionization energies and vibrational structure in the cation, without any prior separation steps. Only few setups exist that can be used to gather these data, although their impact and applicability is growing steadily in various fields. For closed-shell species an easier and more widely used method is gas-chromatography, but most open shell species would not survive the separation process. Due to the reactivity of radicals they have to be created by selectively converting stable precursor molecules. Depending on the radical generation method different properties can be investigated ranging from thermodynamic data, over concentrations in high temperature environments, to chemical kinetics. The first part of this thesis deals with the determination of bimolecular rate constants. Isomeric hydrocarbon radicals were generated by a high intense UV light pulses and their kinetics with oxygen was measured. The pressure dependence of different isomers in the falloff region was compared to theoretical models, and their reactivity could be explained. The second part deals with boron containing compounds in various electronic situations. The corresponding precursors were successfully synthesized or could be bought. They were subjected to fluorine atoms in chemical reactors or destroyed pyrolytically at high temperatures. Most investigated species exhibited vibronic effects that could be elucidated using high level computations.}, subject = {Biradikal}, language = {en} } @phdthesis{Nahm2021, author = {Nahm, Daniel}, title = {Poly(2-oxazine) Based Biomaterial Inks for the Additive Manufacturing of Microperiodic Hydrogel Scaffolds}, doi = {10.25972/OPUS-24598}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-245987}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {The aim of this thesis was the preparation of a biomaterial ink for the fabrication of chemically crosslinked hydrogel scaffolds with low micron sized features using melt electrowriting (MEW). By developing a functional polymeric material based on 2-alkyl-2-oxazine (Ozi) and 2-alkyl-2-oxazoline (Ox) homo- and copolymers in combination with Diels-Alder (DA)-based dynamic covalent chemistry, it was possible to achieve this goal. This marks an important step for the additive manufacturing technique melt electrowriting (MEW), as soft and hydrophilic structures become available for the first time. The use of dynamic covalent chemistry is a very elegant and efficient method for consolidating covalent crosslinking with melt processing. It was shown that the high chemical versatility of the Ox and Ozi chemistry offers great potential to control the processing parameters. The established platform offers straight forward potential for modification with biological cues and fluorescent markers. This is essential for advanced biological applications. The physical properties of the material are readily controlled and the potential for 4D-printing was highlighted as well. The developed hydrogel architectures are excellent candidates for 3D cell culture applications. In particular, the low internal strength of some of the scaffolds in combination with the tendency of such constructs to collapse into thin strings could be interesting for the cultivation of muscle or nerve cells. In this context it was also possible to show that MEW printed hydrogel scaffolds can withstand the aspiration and ejection through a cannula. This allows the application as scaffolds for the minimally invasive delivery of implants or functional tissue equivalent structures to various locations in the human body.}, subject = {Polymere}, language = {en} } @article{ReinersAsamFreyetal.2021, author = {Reiners, Philipp and Asam, Sarah and Frey, Corinne and Holzwarth, Stefanie and Bachmann, Martin and Sobrino, Jose and G{\"o}ttsche, Frank-M. and Bendix, J{\"o}rg and Kuenzer, Claudia}, title = {Validation of AVHRR Land Surface Temperature with MODIS and in situ LST — a TIMELINE thematic processor}, series = {Remote Sensing}, volume = {13}, journal = {Remote Sensing}, number = {17}, issn = {2072-4292}, doi = {10.3390/rs13173473}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-246051}, year = {2021}, abstract = {Land Surface Temperature (LST) is an important parameter for tracing the impact of changing climatic conditions on our environment. Describing the interface between long- and shortwave radiation fluxes, as well as between turbulent heat fluxes and the ground heat flux, LST plays a crucial role in the global heat balance. Satellite-derived LST is an indispensable tool for monitoring these changes consistently over large areas and for long time periods. Data from the AVHRR (Advanced Very High-Resolution Radiometer) sensors have been available since the early 1980s. In the TIMELINE project, LST is derived for the entire operating period of AVHRR sensors over Europe at a 1 km spatial resolution. In this study, we present the validation results for the TIMELINE AVHRR daytime LST. The validation approach consists of an assessment of the temporal consistency of the AVHRR LST time series, an inter-comparison between AVHRR LST and in situ LST, and a comparison of the AVHRR LST product with concurrent MODIS (Moderate Resolution Imaging Spectroradiometer) LST. The results indicate the successful derivation of stable LST time series from multi-decadal AVHRR data. The validation results were investigated regarding different LST, TCWV and VA, as well as land cover classes. The comparisons between the TIMELINE LST product and the reference datasets show seasonal and land cover-related patterns. The LST level was found to be the most determinative factor of the error. On average, an absolute deviation of the AVHRR LST by 1.83 K from in situ LST, as well as a difference of 2.34 K from the MODIS product, was observed.}, language = {en} } @phdthesis{vonWardenburg2021, author = {von Wardenburg, Niels Oliver}, title = {Investigations into the Pathogenic Antibody-Antigen-Interference of Glycine Receptor Autoantibodies}, doi = {10.25972/OPUS-24721}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-247217}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {Anti-glycine receptor (GlyR) autoantibodies belong to the novel group of autoantibodies that target neuronal cell-surface antigens (NCS), which are accompanied with various neurologic and neuropsychiatric conditions. The inhibitory ionotropic GlyR is one of the major inhibitory neurotransmitter receptors and therefore involved in maintaining homeostasis of neuronal excitation levels at brain stem and spinal cord. Anti-GlyR autoantibodies are associated with progressive encephalomyelitis with rigidity and myoclonus or stiff person syndrome. These neuromotor disorders are characterized by exaggerated startle, muscle stiffness, and painful spasms, leading to immobility and fatal outcome in some cases. It was hypothesized that imbalance of motoneuronal inhibition by functional impairment of GlyR and receptor internalization are direct consequences of antibody-antigen interference. Here, serum samples of four patients were tested for anti-GlyR autoantibodies and were used for the analysis of the functional impact on the electrophysiological properties of recombinant GlyRs, transiently expressed in HEK293 cells. Furthermore, the recognition pattern of anti- GlyR autoantibodies to human, zebrafish and chimeric GlyRα1 located the epitope to the far N-terminal region. The pathogenicity of anti-GlyR autoantibodies and thereby the autoimmunologic etiology of the disease was confirmed by passive transfer of patient serum to zebrafish (Danio rerio) larvae, that yielded an abnormal escape response - a brain stem reflex that corresponds to the exaggerated startle of afflicted patients. The phenotype was accompanied by profound reduction of GlyR clusters in spinal cord cryosections of treated zebrafish larvae. Together, these novel insights into the pathogenicity of GlyR autoantibodies confirm the concept of a novel neurologic autoimmune disease and might contribute to the development of innovative therapeutic strategies.}, language = {en} } @phdthesis{Renner2021, author = {Renner, Rebecca}, title = {Aggregation, Chirality and Reduction of Nonplanar Polycyclic Aromatic Hydrocarbons}, doi = {10.25972/OPUS-24700}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-247000}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {Within this thesis the interactions between novel corannulene derivatives in solution as well as in the solid state by changing the imide residue of a literature known extended corannulene dicarboximide were investigated, in order to obtain a better understanding of the packing and possible charge transport in potential applications. Accordingly, the goal of the work was to synthesize and investigate an electron-poor corannulene bis(dicarboximide) based on previously published work but with higher solubility and less steric encumbrance in imide position to enable self-assembly in solution. To obtain further insights into the conformational stability, structure and chiroptical properties of heavily twisted PBIs another aim of this thesis was the design, synthesis, and optoelectronic investigation of various fourfold directly arylated PBIs by substitution in bay position with smaller hydrocarbons with different steric demand, i.e., benzene, naphthalene and pyrene, which should be separable by chiral high performance liquid chromatography (HPLC). As of yet, no concise study concerning the optical and electronic properties of differently core-substituted PBIs in the neutral as well as the mono- and dianionic state in solution is available, which also elucidates the origin of the different optical transitions observed in the absorption and emission spectra. Thus, in this thesis, the investigation of five PBI derivatives with different frontier energetic levels to produce a reference work of reduced PBIs was tackled.}, subject = {Corannulene}, language = {en} } @phdthesis{Sarma2021, author = {Sarma, Bhavishya}, title = {Merkel Cell Carcinoma: Investigations on its carcinogenesis and new therapeutic approaches}, doi = {10.25972/OPUS-24740}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-247402}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {Merkel cell carcinoma (MCC) is a rare and aggressive skin cancer with an increasing incidence. The majority of MCC cases (approximately 80\%) are associated with the Merkel cell polyomavirus (MCPyV). This virus encodes for the MCPyV T antigens (small T (sT) and large T (LT)), which are oncoproteins that drive MCC carcinogenesis. However, the precise cells of the skin that are transformed by the T antigens are not known i.e., the cells of origin of MCC are yet to be discovered. Therefore, the first part of this study involved the generation and evaluation of a vector system that could be used to study MCC oncogenesis. To this end, a set of lentiviral vectors was cloned that allows independent, inducible expression of potential key factors in MCC oncogenesis. In addition, a CRISPR/Cas9 knock in was established that allows the coding sequence for a fluorescent protein to be placed under the control of the promoter of KRT20, one of the most crucial markers of MCC. The functionality of this KRT20 reporter was proven in the MCPyV-positive MCC cell line, WaGa. The different inducible vector systems (doxycycline-inducible MCPyV T antigens or MCPyV sT, RheoSwitch-inducible ATOH1 and IPTG-inducible dnMAML1 and GLI1) were found to have different efficacies in various cellular systems and in particular, a considerable reduction in efficiency was observed at times upon the interaction of several vectors in one cell. In the second and more important part of this study, the role of the well-established anti-malarial drug, artesunate, which possesses additional anti-tumor and anti-viral activity, in the treatment of MCPyV-positive MCC was analyzed. In our study, artesunate was found to be cytotoxic towards MCPyV-positive MCC cell lines in vitro and repressed tumor growth in vivo in a mouse model. Artesunate was also found to downregulate T antigen expression, which is critical for the proliferation of MCPyV-positive MCC cells. The repression of T antigen expression, however, was not the sole mechanism of artesunate's cytotoxic action; instead, the MCPyV-positive MCC cell line, WaGa, was found to be even less sensitive to artesunate after shRNA knockdown of the T antigens. Since loss of membrane integrity occurred more rapidly than degradation/loss of genomic DNA under the influence of artesunate in four of five MCPyV-positive MCC cell lines examined, apoptosis, although widely described as a modus operandi for artesunate, did not appear to be a determinant of the cytotoxicity of artesunate against MCPyV-positive MCC cells. Instead, we were able to demonstrate that artesunate induced the recently described iron-dependent and lipid peroxide-associated form of cell death known as "ferroptosis". This was achieved primarily through the use of inhibitors that can suppress specific individual steps of the ferroptotic process. Thus, artesunate-induced cell death of MCPyV-positive MCC cells could be suppressed by iron chelators and by the inhibition of lipid peroxidation and lysosomal transport. Surprising results were obtained from the analysis of two proteins associated with the ferroptotic process, namely, ferroptosis suppressor protein 1 (FSP1) and tumor suppressor protein p53. Here, we showed that ectopically- 2 expressed FSP1 cannot suppress artesunate-induced ferroptosis in MCPyV-positive MCC cells and that p53 does not play a pro-ferroptotic role in artesunate-induced cell death of MCPyV-positive MCCs. Since artesunate did not suppress the interferon-γ-induced expression of immune-related molecules such as HLA and PD-L1 on the surface of MCPyV-positive MCCs, our study also provided the first positive evidence for its use in combinatorial immunotherapy. Overall, this study showed that artesunate appears to be an effective drug for the treatment of MCPyV-positive MCC and might also be considered for its use in combinatorial MCC immunotherapy in the future.}, language = {en} } @phdthesis{EliasdosSantos2021, author = {Elias dos Santos, Graciely}, title = {Spin-Orbit Torques and Galvanomagnetic Effects Generated by the 3D Topological Insulator HgTe}, doi = {10.25972/OPUS-24797}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-247971}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {In meiner Dissertation besch{\"a}ftigte ich mich mit der Frage, ob der 3D topologische Isolator Quecksilbertellurid (3D TI HgTe) ein geeignetes Material f{\"u}r Spintronik-Anwendungen ist. Wir untersuchten Spin-Bahn-Drehmomente, die auf Elektronen beim Tunneln zwischen HgTe und einem angrenzenden Ferromagneten (Permalloy) einwirken. Zun{\"a}chst setzten wir die Methode der Ferromagnetresonanz (SOT-FMR) f{\"u}r diese Untersuchungen ein. Im ersten Teil der Dissertation werden die Leser in die mathematische Beschreibung von Spin- Bahn-Drehmomenten in einem Hybridsystem bestehend aus topologischem Isolator (TI) und Ferromagnet (FM) eingef{\"u}hrt. Des Weiteren werden die Probenherstellung und der Messaufbau f{\"u}r SOT-FMR Messungen besprochen. Unsere SOT-FMR Messungen ergaben, dass bei tiefen Temperaturen (T = 4.2 K) die Normalkomponente (bezogen auf der TI-Oberfl{\"a}che) des Drehmoments groß war. Bei Raumtemperatur konnten im Signal beide Komponenten (parallel und normal zur TI-Oberfl{\"a}che) beobachtet werden. Aus der Symmetrie der Mixing-Spannung (Abbildungen 3.14 und 3.15) schlossen wir, dass 3D TI HgTe ein Spin-Bahn-Drehmoment auf das Elektronensystem des Permalloys {\"u}bertr{\"a}gt. Unsere Untersuchungen zeigten dar{\"u}ber hinaus, dass die Effizienz dieser {\"U}bertragung mit der anderer vorhandener topologischen Isolatoren vergleichbar ist (siehe Abb. 3.17). Abschließend wurden parasit{\"a}re Effekte bei der Absch{\"a}tzung des Spin-Bahn-Drehmoments bzw. andere Interpretationen des Messsignals und seiner Komponenten (z.B., Thermospannungen) ausf{\"u}hrlich diskutiert. Obwohl die hier gezeigten Ergebnisse vermehrt darauf hinweisen, dass der 3D TI HgTe m{\"o}glicherweise effizient f{\"u}r die Anwendung von Spin-Drehmomenten in angrezenden Ferromagneten ist [1], wird dem Leser weiderholt klargemacht, dass parasit{\"a}re Effekte eventuelle das korrekte Schreiben und Lesen der Information in Ferromagneten verunreignigt. Diese sollten auch bei der Interpretation von publizierten Resultaten besonders hohen Spin-Bahn-Drehmoment{\"u}bertragungen in der Literatur ber{\"u}cksichtigt werden [1-3]. Die Nachteile der SOT-FMR-Messmethode f{\"u}hrten zu einerWeiterentwicklung unseres Messkonzepts, bei dem der Ferromagnet durch eine Spin-Valve-Struktur ersetzt wurde. In dieser Messanordnung ist der Stromfluss durch den 3D TI im Gegensatz zu den vorangegangenen Messungen bekannt und die Widerstands{\"a}nderung der Spin-Valve-Struktur kann durch den GMR-Effekt ausgelesen werden. Die Ausrichtung der Magnetisierung des Ferromagneten in den SOT-FMR-Experimenten erforderte es, ein magnetisches Feld von bis zu 300 mT parallel zur TI-Oberfl{\"a}che anzulegen. Motiviert durch diesen Umstand, untersuchten wir den Einfluss eines parallelen Magnetfelds auf den Magnetowiderstand in 3D TI HgTe. Die {\"u}berraschenden Resultate dieser Messungen werden im zweiten Teil der Dissertation beschrieben. Obwohl nichtmagnetisches Quecksilbertellurid untersucht wurde, oszillierte der transversale Magnetowiderstand (Rxy) mit dem Winkel � zwischen der Magnetfeldrichtung (parallel zur Oberfl{\"a}che) und der elektrischen Stromflussrichtung im topologischen Isolator. Dieser Effekt ist eine typische Eigenschaft von ferromagnetischen Materialien und wird planarer Hall-Effekt (PHE) genannt[4, 5]. Magnetowiderstands- (MR-)Oszillationen wurden ebenfalls sowohl im L{\"a}ngswiderstand (Rxx) und im transversalen Widerstand (Rxy) {\"u}ber einen weiten Bereich von magnetischen Feldst{\"a}rken und Ladungstr{\"a}gerdichten des topologischen Isolators beobachtet. Der PHE wurde bereits zuvor in einem anderen TI-Material (Bi2-xSbxTe3) beschrieben [6]. Als physikalischer Mechanismus wurde von den Autoren Elektronenstreuung an magnetisch polarisierten Streuzentren vorgeschlagen. Wir diskutierten sowohl diesen Erkl{\"a}rungsansatz als auch andere Theorievorschl{\"a}ge in der Literatur [7, 8] kritisch. In dieser Doktorarbeit haben wir versucht, der PHE des 3D TI HgTe durch die Asymmetrie in der Bandstruktur dieses Materials zu erkl{\"a}ren. In k.p Bandstrukturrechnungen mit einer 6-Orbital-Basis zeigten wir, dass das Zwischenspiel von Rashba- und Dresselhaus-Spin-Bahn- Wechselwirkung mit dem magnetischen Feld parallel zur TI-Oberfl{\"a}che zu einer Verformung der Fermikontur des Valenzbands von 3D TI-HgTe f{\"u}hrt, welche ihrerseits eine Anisotropie des Leitf{\"a}higkeit bedingt. Die ben{\"o}tigten Magnetfeldst{\"a}rken in diesem Modell waren mit bis zu 40 T jedoch etwa eine Gr{\"o}ßenordnung gr{\"o}ßer als jene in unseren Experimenten. Des Weiteren lieferte eine direkte Berechnung der Zustandsdichten f{\"u}r Bin k I und Bin ? I bisher keine klaren Resultate. Die komplizierte Abh{\"a}ngigkeit der Rashba-Spin-Bahn-Kopplung f{\"u}r p-leitendes HgTe [9] machte es außerdem schwierig, diesen Term in die Bandstrukturrechnung zu inkludieren. Trotz umfangreicher Bem{\"u}hungen, den Ursprung der galvanomagnetischen Effekte im 3D TI HgTe zu verstehen, konnte in dieser Arbeit der Mechanismus des PHE und der MR-Oszillationen nicht eindeutig bestimmt werden. Es gelang jedoch, einige aus der Literatur bekannte Theorien f{\"u}r den PHE und die MR-Oszillationseffekte in topologischen Isolatoren auszuschließen. Die Herausforderung, eine vollst{\"a}ndige theoretische Beschreibung zu entwickeln, die allen experimentellen Aspekten (PHE, Gatespannungsabh{\"a}ngigkeit und MR-Oszillationen) gerecht wird, bleibt weiter bestehen. Abschließend m{\"o}chte die Autorin ihre Hoffnung ausdr{\"u}cken, den Lesern die Komplexit{\"a}t der Fragestellung n{\"a}her gebracht zu haben und sie in die Kunst elektrischer Messungen an topologischen Isolatoren bei angelegtem parallelem Magnetfeld initiiert zu haben.}, language = {en} } @phdthesis{Klett2021, author = {Klett, Michael}, title = {Auxiliary particle approach for strongly correlated electrons : How interaction shapes order}, doi = {10.25972/OPUS-24812}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-248121}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {Since the genesis of condensed matter physics, strongly correlated fermionic systems have shown a variety of fascinating properties and remain a vital topic in the field. Such systems arise through electronic interaction, and despite decades of intensive research, no holistic approach to solving this problem has been found. During that time, physicists have compiled a wealth of individual experimental and theoretical results, which together give an invaluable insight into these materials, and, in some instances, can explain correlated phenomena. However, there are several systems that stubbornly refuse to fall completely in line with current theoretical descriptions, among them the high-\( T_c{}\) cuprates and heavy fermion compounds. Although the two material classes have been around for the better part of the last 50 years, large portions of their respective phase diagram are still under intensive debate. Recent experiments in several electron-doped cuprates compounds, e.g. neodymium cerium copper oxide (Nd\(_{2x}\)Ce\(_x\)CuO\(_4\)), reveal a charge ordering about an antiferromagnetic ground state. So far, it has not been conclusively clarified how this intertwining of charge and spin polarization comes about and how it can be reconciled with a rigorous theoretical description. The heavy-fermion semimetals, on the other hand, have enjoyed renewed scientific interest with the discovery of topological Kondo insulators, a new material class offering a unique interface of topology, symmetry breaking, and correlated phenomena. In this context, samarium hexaboride (SmB\(_6\)) has emerged as a prototypical system, which may feature a topological ground state. In this thesis, we present a spin rotational invariant auxiliary particle approach to investigate the propensities of interacting electrons towards forming new states of order. In particular, we study the onset of spin and charge order in high-\( T_c{}\) cuprate systems and Kondo lattices, as well as the interplay of magnetism and topology. To that end, we use a sophisticated mean-field approximation of bosonic auxiliary particles augmented by a stability analysis of the saddle point via Gaussian fluctuations. The latter enables the derivation of dynamic susceptibilities, which describe the response of the system under external fields and offer a direct comparison to experiments. Both the mean-field and fluctuation formalisms require a numerical tool that is capable of extremizing the saddle point equations, on the one hand, and reliably solving a loop integral of the susceptibility-type, on the other. A full, from scratch derivation of the formalism tailored towards a software implementation, is provided and pedagogically reviewed. The auxiliary particle method allows for a rigorous description of incommensurate magnetic order and compares well to other established numerical and analytical techniques. Within our analysis, we employ the two-dimensional one-band Hubbard as well as the periodic Anderson model as minimal Hamiltonians for the high-\( T_c{}\) cuprates and Kondo systems, respectively. For the former, we observe a regime of intertwined charge- and spin-order in the electron-doped regime, which matches recent experimental observations in the cuprate material Nd\(_{2x}\)Ce\(_x\)CuO\(_4\). Furthermore, we localize the emergence of a Kondo regime in the periodic Anderson model and establish the magnetic phase diagram of the two-band model for topological Kondo insulators. The emerging antiferromagnetic ground state can be characterized by its topological properties and shows, for a non-trivial phase, topologically protected hinge modes.}, subject = {Festk{\"o}rpertheorie}, language = {en} } @article{ShanBoeckKelleretal.2021, author = {Shan, Junwen and B{\"o}ck, Thomas and Keller, Thorsten and Forster, Leonard and Blunk, Torsten and Groll, J{\"u}rgen and Teßmar, J{\"o}rg}, title = {TEMPO/TCC as a Chemo Selective Alternative for the Oxidation of Hyaluronic Acid}, series = {Molecules}, volume = {26}, journal = {Molecules}, number = {19}, issn = {1420-3049}, doi = {10.3390/molecules26195963}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-248362}, year = {2021}, abstract = {Hyaluronic acid (HA)-based hydrogels are very commonly applied as cell carriers for different approaches in regenerative medicine. HA itself is a well-studied biomolecule that originates from the physiological extracellular matrix (ECM) of mammalians and, due to its acidic polysaccharide structure, offers many different possibilities for suitable chemical modifications which are necessary to control, for example, network formation. Most of these chemical modifications are performed using the free acid function of the polymer and, additionally, lead to an undesirable breakdown of the biopolymer's backbone. An alternative modification of the vicinal diol of the glucuronic acid is oxidation with sodium periodate to generate dialdehydes via a ring opening mechanism that can subsequently be further modified or crosslinked via Schiff base chemistry. Since this oxidation causes a structural destruction of the polysaccharide backbone, it was our intention to study a novel synthesis protocol frequently applied to selectively oxidize the C6 hydroxyl group of saccharides. On the basis of this TEMPO/TCC oxidation, we studied an alternative hydrogel platform based on oxidized HA crosslinked using adipic acid dihydrazide as the crosslinker.}, language = {en} } @article{SchlevogtBoekerMaussetal.2021, author = {Schlevogt, Bernhard and Boeker, Klaus H. W. and Mauss, Stefan and Klinker, Hartwig and Heyne, Renate and Link, Ralph and Simon, Karl-Georg and Sarrazin, Christoph and Serfert, Yvonne and Manns, Michael P. and Wedemeyer, Heiner}, title = {Weight gain after interferon-free treatment of chronic hepatitis C — results from the German Hepatitis C-Registry (DHC-R)}, series = {Biomedicines}, volume = {9}, journal = {Biomedicines}, number = {10}, issn = {2227-9059}, doi = {10.3390/biomedicines9101495}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-248476}, year = {2021}, abstract = {Chronic hepatitis C can be treated very effectively with direct-acting antivirals (DAA) with only minor side effects compared to an interferon-containing treatment regimen. The significance of metabolic comorbidities after HCV cure is not well defined. This study aims to investigate short- and long-term weight change of patients receiving interferon-free antiviral treatment for chronic hepatitis C. The German Hepatitis C-registry (DHC-R) is a national multicenter real-world cohort. A total of 5111 patients were followed prospectively after DAA treatment for up to 3 years. Weight change compared to baseline was analyzed at end of treatment and at years 1, 2, and 3 after completion of antiviral therapy. Regression analysis was performed to identify baseline predictors for weight change. While there was no relevant mean weight change (-0.2 kg, SD 4.3 kg) at the end of antiviral treatment, weight started to increase during long-term follow-up reaching +1.7 kg (SD 8.0 kg, p < 0.001) compared to baseline at 3 years (follow-up year 3, FU3) after completion of antiviral therapy. 48\%, 31\%, and 22\% of patients had a weight gain greater than 1, 3, and 5 kg at FU3, respectively. During follow-up, a body mass index (BMI) <30 proved to be the only consistent predictor for weight gain. DAA treatment is followed by a substantial weight gain (+3 kg or more) in one-third of the patients during long-term follow-up. Non-obese patients seemed to be most vulnerable to weight gain. The body compartment involved in weight gain as well as the mechanism of weight gain remain to be elucidated.}, language = {en} } @phdthesis{Kramer2021, author = {Kramer, Alexander}, title = {Orbit control of a very small satellite using electric propulsion}, isbn = {978-3-945459-34-8 (online)}, doi = {10.25972/OPUS-24155}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-241552}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {Miniaturized satellites on a nanosatellite scale below 10kg of total mass contribute most to the number of launched satellites into Low Earth Orbit today. This results from the potential to design, integrate and launch these space missions within months at very low costs. In the past decade, the reliability in the fields of system design, communication, and attitude control have matured to allow for competitive applications in Earth observation, communication services, and science missions. The capability of orbit control is an important next step in this development, enabling operators to adjust orbits according to current mission needs and small satellite formation flight, which promotes new measurements in various fields of space science. Moreover, this ability makes missions with altitudes above the ISS comply with planned regulations regarding collision avoidance maneuvering. This dissertation presents the successful implementation of orbit control capabilities on the pico-satellite class for the first time. This pioneering achievement is demonstrated on the 1U CubeSat UWE-4. A focus is on the integration and operation of an electric propulsion system on miniaturized satellites. Besides limitations in size, mass, and power of a pico-satellite, the choice of a suitable electric propulsion system was driven by electromagnetic cleanliness and the use as a combined attitude and orbit control system. Moreover, the integration of the propulsion system leaves the valuable space at the outer faces of the CubeSat structure unoccupied for future use by payloads. The used NanoFEEP propulsion system consists of four thruster heads, two neutralizers and two Power Processing Units (PPUs). The thrusters can be used continuously for 50 minutes per orbit after the liquefaction of the propellant by dedicated heaters. The power consumption of a PPU with one activated thruster, its heater and a neutralizer at emitter current levels of 30-60μA or thrust levels of 2.6-5.5μN, respectively, is in the range of 430-1050mW. Two thruster heads were activated within the scope of in-orbit experiments. The thrust direction was determined using a novel algorithm within 15.7° and 13.2° of the mounting direction. Despite limited controllability of the remaining thrusters, thrust vector pointing was achieved using the magnetic actuators of the Attitude and Orbit Control System. In mid 2020, several orbit control maneuvers changed the altitude of UWE-4, a first for pico-satellites. During the orbit lowering scenario with a duration of ten days, a single thruster head was activated in 78 orbits for 5:40 minutes per orbit. This resulted in a reduction of the orbit altitude by about 98.3m and applied a Delta v of 5.4cm/s to UWE-4. The same thruster was activated in another experiment during 44 orbits within five days for an average duration of 7:00 minutes per orbit. The altitude of UWE-4 was increased by about 81.2m and a Delta v of 4.4cm/s was applied. Additionally, a collision avoidance maneuver was executed in July 2020, which increased the distance of closest approach to the object by more than 5000m.}, subject = {Kleinsatellit}, language = {en} } @article{KochPetzoldWesselyetal.2021, author = {Koch, Elias A. T. and Petzold, Anne and Wessely, Anja and Dippel, Edgar and Gesierich, Anja and Gutzmer, Ralf and Hassel, Jessica C. and Haferkamp, Sebastian and Hohberger, Bettina and K{\"a}hler, Katharina C. and Knorr, Harald and Kreuzberg, Nicole and Leiter, Ulrike and Loquai, Carmen and Meier, Friedegund and Meissner, Markus and Mohr, Peter and Pf{\"o}hler, Claudia and Rahimi, Farnaz and Schadendorf, Dirk and Schell, Beatrice and Schlaak, Max and Terheyden, Patrick and Thoms, Kai-Martin and Schuler-Thurner, Beatrice and Ugurel, Selma and Ulrich, Jens and Utikal, Jochen and Weichenthal, Michael and Ziller, Fabian and Berking, Carola and Heppt, Markus}, title = {Immune checkpoint blockade for metastatic uveal melanoma: patterns of response and survival according to the presence of hepatic and extrahepatic metastasis}, series = {Cancers}, volume = {13}, journal = {Cancers}, number = {13}, issn = {2072-6694}, doi = {10.3390/cancers13133359}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-242603}, year = {2021}, abstract = {Background: Since there is no standardized and effective treatment for advanced uveal melanoma (UM), the prognosis is dismal once metastases develop. Due to the availability of immune checkpoint blockade (ICB) in the real-world setting, the prognosis of metastatic UM has improved. However, it is unclear how the presence of hepatic and extrahepatic metastasis impacts the response and survival after ICB. Methods: A total of 178 patients with metastatic UM treated with ICB were included in this analysis. Patients were recruited from German skin cancer centers and the German national skin cancer registry (ADOReg). To investigate the impact of hepatic metastasis, two cohorts were compared: patients with liver metastasis only (cohort A, n = 55) versus those with both liver and extra-hepatic metastasis (cohort B, n = 123). Data were analyzed in both cohorts for response to treatment, progression-free survival (PFS), and overall survival (OS). The survival and progression probabilities were calculated with the Kaplan-Meier method. Log-rank tests, χ\(^2\) tests, and t-tests were performed to detect significant differences between both cohorts. Results: The median OS of the overall population was 16 months (95\% CI 13.4-23.7) and the median PFS, 2.8 months (95\% CI 2.5-3.0). The median OS was longer in cohort B than in cohort A (18.2 vs. 6.1 months; p = 0.071). The best objective response rate to dual ICB was 13.8\% and to anti-PD-1 monotherapy 8.9\% in the entire population. Patients with liver metastases only had a lower response to dual ICB, yet without significance (cohort A 8.7\% vs. cohort B 16.7\%; p = 0.45). Adverse events (AE) occurred in 41.6\%. Severe AE were observed in 26.3\% and evenly distributed between both cohorts. Conclusion: The survival of this large cohort of patients with advanced UM was more favorable than reported in previous benchmark studies. Patients with both hepatic and extrahepatic metastasis showed more favorable survival and higher response to dual ICB than those with hepatic metastasis only.}, language = {en} } @article{OpolkaMuellerFellaetal.2021, author = {Opolka, Alexander and M{\"u}ller, Dominik and Fella, Christian and Balles, Andreas and Mohr, J{\"u}rgen and Last, Arndt}, title = {Multi-lens array full-field X-ray microscopy}, series = {Applied Sciences}, volume = {11}, journal = {Applied Sciences}, number = {16}, issn = {2076-3417}, doi = {10.3390/app11167234}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-244974}, year = {2021}, abstract = {X-ray full-field microscopy at laboratory sources for photon energies above 10 keV suffers from either long exposure times or low resolution. The photon flux is mainly limited by the objectives used, having a limited numerical aperture NA. We show that this can be overcome by making use of the cone-beam illumination of laboratory sources by imaging the same field of view (FoV) several times under slightly different angles using an array of X-ray lenses. Using this technique, the exposure time can be reduced drastically without any loss in terms of resolution. A proof-of-principle is given using an existing laboratory metal-jet source at the 9.25 keV Ga K\(_α\)-line and compared to a ray-tracing simulation of the setup.}, language = {en} } @article{BrunkhorstKanaanTrautmannSchreiberetal.2021, author = {Brunkhorst-Kanaan, Nathalie and Trautmann, Sandra and Schreiber, Yannick and Thomas, Dominique and Kittel-Schneider, Sarah and Gurke, Robert and Geisslinger, Gerd and Reif, Andreas and Tegeder, Irmgard}, title = {Sphingolipid and endocannabinoid profiles in adult attention deficit hyperactivity disorder}, series = {Biomedicines}, volume = {9}, journal = {Biomedicines}, number = {9}, issn = {2227-9059}, doi = {10.3390/biomedicines9091173}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-246080}, year = {2021}, abstract = {Genes encoding endocannabinoid and sphingolipid metabolism pathways were suggested to contribute to the genetic risk towards attention deficit hyperactivity disorder (ADHD). The present pilot study assessed plasma concentrations of candidate endocannabinoids, sphingolipids and ceramides in individuals with adult ADHD in comparison with healthy controls and patients with affective disorders. Targeted lipid analyses of 23 different lipid species were performed in 71 mental disorder patients and 98 healthy controls (HC). The patients were diagnosed with adult ADHD (n = 12), affective disorder (major depression, MD n = 16 or bipolar disorder, BD n = 6) or adult ADHD with comorbid affective disorders (n = 37). Canonical discriminant analysis and CHAID analyses were used to identify major components that predicted the diagnostic group. ADHD patients had increased plasma concentrations of sphingosine-1-phosphate (S1P d18:1) and sphinganine-1-phosphate (S1P d18:0). In addition, the endocannabinoids, anandamide (AEA) and arachidonoylglycerol were increased. MD/BD patients had increased long chain ceramides, most prominently Cer22:0, but low endocannabinoids in contrast to ADHD patients. Patients with ADHD and comorbid affective disorders displayed increased S1P d18:1 and increased Cer22:0, but the individual lipid levels were lower than in the non-comorbid disorders. Sphingolipid profiles differ between patients suffering from ADHD and affective disorders, with overlapping patterns in comorbid patients. The S1P d18:1 to Cer22:0 ratio may constitute a diagnostic or prognostic tool.}, language = {en} } @article{DechHolzwarthAsametal.2021, author = {Dech, Stefan and Holzwarth, Stefanie and Asam, Sarah and Andresen, Thorsten and Bachmann, Martin and Boettcher, Martin and Dietz, Andreas and Eisfelder, Christina and Frey, Corinne and Gesell, Gerhard and Gessner, Ursula and Hirner, Andreas and Hofmann, Matthias and Kirches, Grit and Klein, Doris and Klein, Igor and Kraus, Tanja and Krause, Detmar and Plank, Simon and Popp, Thomas and Reinermann, Sophie and Reiners, Philipp and Roessler, Sebastian and Ruppert, Thomas and Scherbachenko, Alexander and Vignesh, Ranjitha and Wolfmueller, Meinhard and Zwenzner, Hendrik and Kuenzer, Claudia}, title = {Potential and challenges of harmonizing 40 years of AVHRR data: the TIMELINE experience}, series = {Remote Sensing}, volume = {13}, journal = {Remote Sensing}, number = {18}, issn = {2072-4292}, doi = {10.3390/rs13183618}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-246134}, year = {2021}, abstract = {Earth Observation satellite data allows for the monitoring of the surface of our planet at predefined intervals covering large areas. However, there is only one medium resolution sensor family in orbit that enables an observation time span of 40 and more years at a daily repeat interval. This is the AVHRR sensor family. If we want to investigate the long-term impacts of climate change on our environment, we can only do so based on data that remains available for several decades. If we then want to investigate processes with respect to climate change, we need very high temporal resolution enabling the generation of long-term time series and the derivation of related statistical parameters such as mean, variability, anomalies, and trends. The challenges to generating a well calibrated and harmonized 40-year-long time series based on AVHRR sensor data flown on 14 different platforms are enormous. However, only extremely thorough pre-processing and harmonization ensures that trends found in the data are real trends and not sensor-related (or other) artefacts. The generation of European-wide time series as a basis for the derivation of a multitude of parameters is therefore an extremely challenging task, the details of which are presented in this paper.}, language = {en} } @article{HennigDjakovicDoelkenetal.2021, author = {Hennig, Thomas and Djakovic, Lara and D{\"o}lken, Lars and Whisnant, Adam W.}, title = {A Review of the Multipronged Attack of Herpes Simplex Virus 1 on the Host Transcriptional Machinery}, series = {Viruses}, volume = {13}, journal = {Viruses}, number = {9}, issn = {1999-4915}, doi = {10.3390/v13091836}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-246165}, year = {2021}, abstract = {During lytic infection, herpes simplex virus (HSV) 1 induces a rapid shutoff of host RNA synthesis while redirecting transcriptional machinery to viral genes. In addition to being a major human pathogen, there is burgeoning clinical interest in HSV as a vector in gene delivery and oncolytic therapies, necessitating research into transcriptional control. This review summarizes the array of impacts that HSV has on RNA Polymerase (Pol) II, which transcribes all mRNA in infected cells. We discuss alterations in Pol II holoenzymes, post-translational modifications, and how viral proteins regulate specific activities such as promoter-proximal pausing, splicing, histone repositioning, and termination with respect to host genes. Recent technological innovations that have reshaped our understanding of previous observations are summarized in detail, along with specific research directions and technical considerations for future studies.}, language = {en} } @article{SchroerToussaintBachmannetal.2021, author = {Schroer, Guido and Toussaint, Val{\´e}rie and Bachmann, Stephanie and P{\"o}ppler, Ann-Christin and Gierlich, Christian Henning and Delidovich, Irina}, title = {Functional Phenylboronate Polymers for the Recovery of Diols, Sugar Alcohols, and Saccharides from Aqueous Solution}, series = {ChemSusChem}, volume = {14}, journal = {ChemSusChem}, number = {23}, doi = {10.1002/cssc.202002887}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-239889}, pages = {5207 -- 5215}, year = {2021}, abstract = {The ongoing transition from fossil to renewable feedstocks demands new efficient processes for an economically viable production of biomass-derived commodities and fine chemicals. Novel energy- and material-efficient product purification and separation will play a crucial role due to altered product and feed composition. The present study comprises the synthesis and tests of cross-linked p-vinylphenylboronate polymers for the separation of 18 diols, sugar alcohols, and saccharides, which can be obtained during biomass processing. The separation was based on molecular recognition, that is, esterification of the phenylboronate with vicinal diols. A correlation of the molecular complexation constant, the polymer swelling, and the maximum adsorption capacity was found. The adsorption curves over time were recorded. Preliminary results on competitive adsorption of binary mixtures showed a high potential for the separation of substrates with significantly different complexation constants. Desorption tests implied easier desorption of substrates that only adsorb on the outer polymer shell.}, language = {en} } @article{ShityakovHayashiStoerketal.2021, author = {Shityakov, Sergey and Hayashi, Kentaro and St{\"o}rk, Stefan and Scheper, Verena and Lenarz, Thomas and F{\"o}rster, Carola Y.}, title = {The conspicuous link between ear, brain and heart - Could neurotrophin-treatment of age-related hearing loss help prevent Alzheimer's disease and associated amyloid cardiomyopathy?}, series = {Biomolecules}, volume = {11}, journal = {Biomolecules}, number = {6}, issn = {2218-273X}, doi = {10.3390/biom11060900}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-241084}, year = {2021}, abstract = {Alzheimer's disease (AD), the most common cause of dementia in the elderly, is a neurodegenerative disorder associated with neurovascular dysfunction and cognitive decline. While the deposition of amyloid β peptide (Aβ) and the formation of neurofibrillary tangles (NFTs) are the pathological hallmarks of AD-affected brains, the majority of cases exhibits a combination of comorbidities that ultimately lead to multi-organ failure. Of particular interest, it can be demonstrated that Aβ pathology is present in the hearts of patients with AD, while the formation of NFT in the auditory system can be detected much earlier than the onset of symptoms. Progressive hearing impairment may beget social isolation and accelerate cognitive decline and increase the risk of developing dementia. The current review discusses the concept of a brain-ear-heart axis by which Aβ and NFT inhibition could be achieved through targeted supplementation of neurotrophic factors to the cochlea and the brain. Such amyloid inhibition might also indirectly affect amyloid accumulation in the heart, thus reducing the risk of developing AD-associated amyloid cardiomyopathy and cardiovascular disease.}, language = {en} } @article{WeissHeinHewig2021, author = {Weiß, Martin and Hein, Grit and Hewig, Johannes}, title = {Between joy and sympathy: Smiling and sad recipient faces increase prosocial behavior in the dictator game}, series = {International Journal of Environmental Research and Public Health}, volume = {18}, journal = {International Journal of Environmental Research and Public Health}, number = {11}, doi = {10.3390/ijerph18116172}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-241106}, year = {2021}, abstract = {In human interactions, the facial expression of a bargaining partner may contain relevant information that affects prosocial decisions. We were interested in whether facial expressions of the recipient in the dictator game influence dictators´ ehavior. To test this, we conducted an online study (n = 106) based on a modified version of a dictator game. The dictators allocated money between themselves and another person (recipient), who had no possibility to respond to the dictator. Importantly, before the allocation decision, the dictator was presented with the facial expression of the recipient (angry, disgusted, sad, smiling, or neutral). The results showed that dictators sent more money to recipients with sad or smiling facial expressions and less to recipients with angry or disgusted facial expressions compared with a neutral facial expression. Moreover, based on the sequential analysis of the decision and the interaction partner in the preceding trial, we found that decision-making depends upon previous interactions.}, language = {en} } @article{LillaKesslerWeilandetal.2021, author = {Lilla, Nadine and Kessler, Almuth F. and Weiland, Judith and Ernestus, Ralf-Ingo and Westermaier, Thomas}, title = {Case Report: A Case Series Using Natural Anatomical Gaps — Posterior Cervical Approach to Skull Base and Upper Craniocervical Meningiomas Without Bone Removal}, series = {Frontiers in Surgery}, volume = {8}, journal = {Frontiers in Surgery}, issn = {2296-875X}, doi = {10.3389/fsurg.2021.666699}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-244613}, year = {2021}, abstract = {Background: Removal of anteriorly located tumors of the upper cervical spine and craniovertebral junction (CVJ) is a particular surgical challenge. Extensive approaches are associated with pain, restricted mobility of neck and head and, in case of foramen magnum and clivus tumors, with retraction of brainstem and cerebellum. Methods: Four symptomatic patients underwent resection of anteriorly located upper cervical and lower clivus meningiomas without laminotomy or craniotomy using a minimally invasive posterior approach. Distances of natural gaps between C0/C1, C1/C2, and C2/C3 were measured using preoperative CT scans and intraoperative lateral x-rays. Results: In all patients, safe and complete resection was conducted by the opening of the dura between C0/C1, C1/C2, and C2/C3, respectively. There were no surgical complications. Local pain was reported as very moderate by all patients and postoperative recovery was extremely fast. All tumors had a rather soft consistency, allowing mass reduction prior to removal of the tumor capsule and were well separable from lower cranial nerves and vascular structures. Conclusion: If tumor consistency is appropriate for careful mass reduction before removal of the tumor capsule and if tumor margins are not firmly attached to crucial structures, then upper cervical, foramen magnum, and lower clivus meningiomas can be safely and completely removed through natural gaps in the CVJ region. Both prerequisites usually become clear early during surgery. Thus, this tumor entity may be planned using this minimally invasive approach and may be extended if tumor consistency turns out to be less unfavorable for resection or if crucial structures cannot be easily separated from the tumor.}, language = {en} } @article{DekantLangerLuppetal.2021, author = {Dekant, Raphael and Langer, Michael and Lupp, Maria and Adaku Chilaka, Cynthia and Mally, Angela}, title = {In vitro and in vivo analysis of ochratoxin A-derived glucuronides and mercapturic acids as biomarkers of exposure}, series = {Toxins}, volume = {13}, journal = {Toxins}, number = {8}, issn = {2072-6651}, doi = {10.3390/toxins13080587}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-245146}, year = {2021}, abstract = {Ochratoxin A (OTA) is a widespread food contaminant, with exposure estimated to range from 0.64 to 17.79 ng/kg body weight (bw) for average consumers and from 2.40 to 51.69 ng/kg bw per day for high consumers. Current exposure estimates are, however, associated with considerable uncertainty. While biomarker-based approaches may contribute to improved exposure assessment, there is yet insufficient data on urinary metabolites of OTA and their relation to external dose to allow reliable estimates of daily intake. This study was designed to assess potential species differences in phase II biotransformation in vitro and to establish a correlation between urinary OTA-derived glucuronides and mercapturic acids and external exposure in rats in vivo. In vitro analyses of OTA metabolism using the liver S9 of rats, humans, rabbits and minipigs confirmed formation of an OTA glucuronide but provided no evidence for the formation of OTA-derived mercapturic acids to support their use as biomarkers. Similarly, OTA-derived mercapturic acids were not detected in urine of rats repeatedly dosed with OTA, while indirect analysis using enzymatic hydrolysis of the urine samples prior to LC-MS/MS established a linear relationship between urinary glucuronide excretion and OTA exposure. These results support OTA-derived glucuronides but not mercapturic acids as metabolites suitable for biomonitoring.}, language = {en} } @article{ScheinerLimMeixneretal.2021, author = {Scheiner, Ricarda and Lim, Kayun and Meixner, Marina D. and Gabel, Martin S.}, title = {Comparing the appetitive learning performance of six European honeybee subspecies in a common apiary}, series = {Insects}, volume = {12}, journal = {Insects}, number = {9}, issn = {2075-4450}, doi = {10.3390/insects12090768}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-245180}, year = {2021}, abstract = {The Western honeybee (Apis mellifera L.) is one of the most widespread insects with numerous subspecies in its native range. How far adaptation to local habitats has affected the cognitive skills of the different subspecies is an intriguing question that we investigate in this study. Naturally mated queens of the following five subspecies from different parts of Europe were transferred to Southern Germany: A. m. iberiensis from Portugal, A. m. mellifera from Belgium, A. m. macedonica from Greece, A. m. ligustica from Italy, and A. m. ruttneri from Malta. We also included the local subspecies A. m. carnica in our study. New colonies were built up in a common apiary where the respective queens were introduced. Worker offspring from the different subspecies were compared in classical olfactory learning performance using the proboscis extension response. Prior to conditioning, we measured individual sucrose responsiveness to investigate whether possible differences in learning performances were due to differential responsiveness to the sugar water reward. Most subspecies did not differ in their appetitive learning performance. However, foragers of the Iberian honeybee, A. m. iberiensis, performed significantly more poorly, despite having a similar sucrose responsiveness. We discuss possible causes for the poor performance of the Iberian honeybees, which may have been shaped by adaptation to the local habitat.}, language = {en} } @article{LauruschkatEtterSchnacketal.2021, author = {Lauruschkat, Chris D. and Etter, Sonja and Schnack, Elisabeth and Ebel, Frank and Sch{\"a}uble, Sascha and Page, Lukas and R{\"u}mens, Dana and Dragan, Mariola and Schlegel, Nicolas and Panagiotou, Gianni and Kniemeyer, Olaf and Brakhage, Axel A. and Einsele, Hermann and Wurster, Sebastian and Loeffler, Juergen}, title = {Chronic occupational mold exposure drives expansion of Aspergillus-reactive type 1 and type 2 T-helper cell responses}, series = {Journal of Fungi}, volume = {7}, journal = {Journal of Fungi}, number = {9}, issn = {2309-608X}, doi = {10.3390/jof7090698}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-245202}, year = {2021}, abstract = {Occupational mold exposure can lead to Aspergillus-associated allergic diseases including asthma and hypersensitivity pneumonitis. Elevated IL-17 levels or disbalanced T-helper (Th) cell expansion were previously linked to Aspergillus-associated allergic diseases, whereas alterations to the Th cell repertoire in healthy occupationally exposed subjects are scarcely studied. Therefore, we employed functional immunoassays to compare Th cell responses to A. fumigatus antigens in organic farmers, a cohort frequently exposed to environmental molds, and non-occupationally exposed controls. Organic farmers harbored significantly higher A. fumigatus-specific Th-cell frequencies than controls, with comparable expansion of Th1- and Th2-cell frequencies but only slightly elevated Th17-cell frequencies. Accordingly, Aspergillus antigen-induced Th1 and Th2 cytokine levels were strongly elevated, whereas induction of IL-17A was minimal. Additionally, increased levels of some innate immune cell-derived cytokines were found in samples from organic farmers. Antigen-induced cytokine release combined with Aspergillus-specific Th-cell frequencies resulted in high classification accuracy between organic farmers and controls. Aspf22, CatB, and CipC elicited the strongest differences in Th1 and Th2 responses between the two cohorts, suggesting these antigens as potential candidates for future bio-effect monitoring approaches. Overall, we found that occupationally exposed agricultural workers display a largely balanced co-expansion of Th1 and Th2 immunity with only minor changes in Th17 responses.}, language = {en} } @phdthesis{Tutschku2021, author = {Tutschku, Christian Klaus}, title = {Anomaly Induced Transport And Hall Viscous Effects In 2+1 Space-Time Dimensions}, doi = {10.25972/OPUS-23913}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-239131}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {The main goal of this thesis is to elucidate the sense in which recent experimental progress in condensed matter physics, namely the verification of two-dimensional Dirac-like materials and their control in ballistic- as well as hydrodynamic transport experiments enables the observation of a well-known 'high-energy' phenomenon: The parity anomaly of planar quantum electrodynamics (QED\(_{2+1}\)). In a nutshell, the low-energy physics of two-dimensional Quantum Anomalous Hall (QAH) insulators like (Hg,Mn)Te quantum wells or magnetically doped (Bi,Sb)Te thin films can be described by the combined response of two 2+1 space-time dimensional Chern insulators with a linear dispersion in momentum. Due to their Dirac-like spectra, each of those Chern insulators is directly related to the parity anomaly of planar quantum electrodynamics. However, in contrast to a pure QED\(_{2+1}\) system, the Lagrangian of each Chern insulator is described by two different mass terms: A conventional momentum-independent Dirac mass \(m\), as well as a momentum-dependent so-called Newtonian mass term \(B \vert \mathbf{k} \vert^2\). According to the parity anomaly it is not possible to well-define a parity- and U(1) gauge invariant quantum system in 2+1 space-time dimensions. More precisely, starting with a parity symmetric theory at the classical level, insisting on gauge-invariance at the quantum level necessarily induces parity-odd terms in the calculation of the quantum effective action. The role of the Dirac mass term in the calculation of the effective QED\(_{2+1}\) action has been initially studied in Phys. Rev. Lett. 51, 2077 (1983). Even in the presence of a Dirac mass, the associated fermion determinant diverges and lacks gauge invariance. This requires a proper regularization/renormalizaiton scheme and, as such, transfers the peculiarities of the parity anomaly to the massive case. In the scope of this thesis, we connect the momentum-dependent Newtonian mass term of a Chern insulator to the parity anomaly. In particular, we reveal, that in the calculation of the effective action, before renormalization, the Newtonian mass term acts similarly to a parity-breaking element of a high-energy regularization scheme. This calculation allows us to derive the finite frequency correction to the DC Hall conductivity of a QAH insulator. We derive that the leading order AC correction contains a term proportional to the Chern number. This term originates from the Newtonian mass and can be measured via electrical or via magneto-optical experiments. The Newtonian mass, in particular, significantly changes the resonance structure of the AC Hall conductivity in comparison to pure Dirac systems like graphene. In addition, we study the effective action of the aforementioned Chern insulators in external out-of-plane magnetic fields. We show that as a consequence of the parity anomaly the QAH phase in (Hg,Mn)Te quantum wells or in magnetically doped (Bi,Sb)Te thin films survives in out-of-plane magnetic fields, violates the Onsager relation, and can therefore be distinguished from a conventional quantum Hall (QH) response. As a smoking-gun of the QAH phase in increasing magnetic fields, we predict a transition from a quantized Hall plateau with \(\sigma_\mathrm{xy}= -\mathrm{e}^2/\mathrm{h}\) to a not perfectly quantized plateau which is caused by scattering processes between counter-propagating QH and QAH edge states. This transition is expected to be of significant relevance in paramagnetic QAH insulators like (Hg,Mn)Te/CdTe quantum wells, in which the exchange interaction competes against the out-of-plane magnetic field. All of the aforementioned results do not incorporate finite temperature effects. In order to shed light on such phenomena, we further analyze the finite temperature Hall response of 2+1 dimensional Chern insulators under the combined influence of a chemical potential and an out-of-plane magnetic field. As we have mentioned above, this non-dissipative transport coefficient is directly related to the parity anomaly of planar quantum electrodynamics. Within the scope of our analysis we show that the parity anomaly itself is not renormalized by finite temperature effects. However, the parity anomaly induces two terms of different physical origin in the effective Chern-Simons action of a QAH insulator, which are directly proportional to its Hall conductivity. The first term is temperature and chemical potential independent and solely encodes the intrinsic topological response. The second term specifies the non-topological thermal response of conduction- and valence band modes, respectively. We show that the relativistic mass \(m\) of a Chern insulator counteracts finite temperature effects, whereas its non-relativistic Newtonian mass \(B \vert \mathbf{k} \vert^2 \) enhances these corrections. In addition, we are extending our associated analysis to finite out-of-plane magnetic fields, and relate the thermal response of a Chern insulator therein to the spectral asymmetry, which is a measure of the parity anomaly in out-of-plane magnetic fields. In the second part of this thesis, we study the hydrodynamic properties of two-dimensional electron systems with a broken time-reversal and parity symmetry. Within this analysis we are mainly focusing on the non-dissipative transport features originating from a peculiar hydrodynamic transport coefficient: The Hall viscosity \(\eta_\mathrm{H}\). In out-of-plane magnetic fields, the Hall viscous force directly competes with the Lorentz force, as both mechanisms contribute to the overall Hall voltage. In our theoretical considerations, we present a way of uniquely distinguishing these two contributions in a two-dimensional channel geometry by calculating their functional dependencies on all external parameters. We are in particular deriving that the ratio of the Hall viscous contribution to the Lorentz force contribution is negative and that its absolute value decreases with an increasing width, slip-length and carrier density. Instead, it increases with the electron-electron mean free path in the channel geometry considered. We show that in typical materials such as GaAs the Hall viscous contribution can dominate the Lorentz signal up to a few tens of millitesla until the total Hall voltage vanishes and eventually is exceeded by the Lorentz contribution. Last but not least, we derive that the total Hall electric field has a parabolic form originating from Lorentz effects. Most remarkably, the offset of this parabola is directly characterized by the Hall viscosity. Therefore, in summary, our results pave the way to measure and to identify the Hall viscosity via both global and local measurements of the entire Hall voltage.}, subject = {Anomalie}, language = {en} } @phdthesis{Himmel2021, author = {Himmel, Marie-Christin}, title = {Phonetic and phonological variability in the L1 and L2 of late bilinguals: The case of /r/ and /l/}, doi = {10.25972/OPUS-23933}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-239335}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {A large body of research has shown that a late bilingual's L1 and L2 phonetic categories influence each other, yielding deviations from monolingual norms in the phonetics of both languages. Existing models of L2 sound acquisition (e.g., the Speech Learning Model; Flege, 1995, 2007) predict unified phonetic spaces which accommodate both L1 and L2 sound categories. Such connections between an L1 and an L2 are believed to lead to persistent non-nativelikeness in the L2, but also to divergence from the monolingual norm in the L1, as shown in numerous studies (e.g., Bergmann et al., 2016). In this dissertation, I focus on the differences in the sound patterns of a bilingual's languages which do not only emerge in the precise phonetic realizations of L1 sounds but also in language-specific distributional patterns that determine the realization of these sound categories in different phonetic contexts. Previous work in L1 attrition is limited to a small set of phonetic properties (especially VOT, e.g., Flege, 1987), variables beyond L2 transfer which are known to give rise to variable realizations have been neglected. Thus, little is known as to whether bilinguals' realizations of an L1 sound category in different phonetic contexts (e.g., position within a syllable) are subject to change in L1 attrition, and whether such changes arise due to long-term exposure to different distributional patterns of an equivalent L2 category. In this dissertation I address these gaps by exploring L1 attrition in the distributional and phonetic characteristics of liquids to shed light on the contribution of the L2 and the role of general phonetic and phonological variables to the processes that drive change in an L1. I investigate changes to phonetic properties and distributional patterns of rhoticity and /l/-allophony in the L1 of American-German late bilinguals, a language constellation which offers an instructive test case to investigate the causes of L1 attrition as well as the source from which changes due to L1 attrition emerge. Furthermore, changes to liquids can also shed light on the processes which drive sound change, gradience and variability due to various positional and phonetic factors (e.g., preceding vowel, syllable structure) in liquids across many native varieties of English. In particular, I explore the variable realization and distributional patterns of two sounds known to be subject to a considerable degree of gradience and variability, namely English /r/ and /l/, in American English-German late bilinguals. To that end, I present the results of a production study of 12 L2-dominant American English-German late bilinguals as well as a monolingual control group for each language. The speakers performed a variety of production tasks which were aimed to elicit the realization of (non)-rhoticity and /l/-(non-)allophony in both languages of the late bilinguals, English and German which were analyzed auditorily (/r/ only) and acoustically (/r/ and /l/). Although L1 attrition of rhotics and laterals has been investigated previously (e.g., de Leeuw, 2008; Ulbrich \& Ordin, 2014), the effect of contextual variables on L1 attrition and whether such variables also shape L1 attrition remains unexplored. The results of the auditory analyses of postvocalic /r/ revealed that the late bilinguals showed non-convergence with monolingual (non-)rhoticity in both of their languages by vocalizing postvocalic /r/ more frequently in their L1 (English) and failing to entirely suppress rhoticity in their L2 (German) leading up to a higher degree of rhoticity in their L2. While the loss of rhoticity in the bilingual's English was distributed along a spectrum of contextual constraints (e.g., type of pre-rhotic vowel and morpho-phonological environment) known to affect rhoticity in other English varieties, the non-targetlike productions of non-rhoticity (i.e., non-vocalized postvocalic /r/) in their L2, German, were not sensitive to the same contextual constraints. The acoustic analyses of the bilinguals' rhotic productions in English and German differed from the monolinguals in the acoustic correlates of rhoticity in pre-rhotic vowels where they showed reduced anticipatory F3-lowering (i.e., less /r/-colored vowels). I take my results to indicate that the bilinguals operate in two separate phonological grammars which approximate the respective L1 norm but show an increase of variability along constraints already present in each grammar. In contrast, the bilinguals' phonetic system seem shared between the two grammars. This leads to persistent L1-L2-interactions as the two grammars operate within the same phonetic space. Thus, the changes in L1 attrition are induced but not governed by the L2: Change to the L1 reflects constraints underlying the L1 as well as more general laws of phonetics and universal trajectories of language change. The lateral results revealed that just like in postvocalic /r/, the bilinguals showed non-convergence with the monolingual norm regarding the velarization of coda /l/ in both their languages. The changes to English laterals were sensitive to their positional context and more substantial for word-initial laterals than word-final laterals. Similarly, their German laterals were non-convergent with the monolinguals in two ways. Firstly, the bilinguals differed with regard to the acoustic specifications of their laterals, and secondly, the bilinguals failed to suppress the lateral allophony from their L1, leading to a non-targetlike allophonic pattern in their L2 laterals. I interpret the lateral results to lack evidence that the L1 allophonic rule was affected by the presence of an L2; nevertheless, L1 change emerged in the phonetic specifications of laterals. Furthermore, the bilinguals did not establish a nativelike allophonic pattern in their L2, leading to non-convergence in the allophonic distribution as well as the phonetic realization of German laterals. In this way, this dissertation provides evidence for L1 attrition in the distributional and the phonetic properties of liquids in the L1 of late bilinguals. In particular, the study presented in this dissertation provides evidence that L1 attrition is induced by the presence of a similar sound pattern in the L2. The pathway of attrition follows constraints not only underlyingly present in the L1 but also part of the universal laws of phonetics known to shape sound change. To explain these results, I draw from existing constraint grammars in phonological theory (such as Optimality Theory and Harmonic Grammar) to develop my Dynamic Constraints approach which allows the effects of external variables (e.g., L2 acquisition and its effect on the mind), and internal variables such as an increased likelihood of variability due to articulatory differences can be modeled using scaling factors which can interact with each other, the noise within the grammars, and the constraint weight itself. In this way, the model links previous findings on L1 attrition and its connections to diachronic and synchronic variability, offering insights into the links between the individual languages in a bilingual's mind.}, subject = {Zweisprachigkeit}, language = {en} } @unpublished{Dandekar2021, author = {Dandekar, Thomas}, title = {Our universe may have started by Qubit decoherence}, doi = {10.25972/OPUS-23918}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-239181}, pages = {54}, year = {2021}, abstract = {Our universe may have started by Qubit decoherence: In quantum computers, qubits have all their states undefined during calculation and become defined as output ("decoherence"). We study the transition from an uncontrolled, chaotic quantum vacuum ("before") to a clearly interacting "real world". In such a cosmology, the Big Bang singularity is replaced by a condensation event of interacting strings. This triggers a crystallization process. This avoids inflation, not fitting current observations: increasing long-range interactions limit growth and crystal symmetries ensure the same laws of nature and basic symmetries over the whole crystal. Tiny mis-arrangements provide nuclei of superclusters and galaxies and crystal structure allows arrangement of dark (halo regions) and normal matter (galaxy nuclei) for galaxy formation. Crystals come and go: an evolutionary cosmology is explored: entropic forces from the quantum soup "outside" of the crystal try to dissolve it. This corresponds to dark energy and leads to a "big rip" in 70 Gigayears. Selection for best growth and condensation events over generations of crystals favors multiple self-organizing processes within the crystal including life or even conscious observers in our universe. Philosophically this theory shows harmony with nature and replaces absurd perspectives of current cosmology. Independent of cosmology, we suggest that a "real world" (so our everyday macroscopic world) happens only inside a crystal. "Outside" there is wild quantum foam and superposition of all possibilities. In our crystallized world the vacuum no longer boils but is cooled down by the crystallization event, space-time exists and general relativity holds. Vacuum energy becomes 10**20 smaller, exactly as observed in our everyday world. We live in a "solid" state, within a crystal, the n quanta which build our world have all their different m states nicely separated. There are only nm states available for this local "multiverse". The arrow of entropy for each edge of the crystal forms one fate, one world-line or clear development of our world, while layers of the crystal are different system states. Mathematical leads from loop quantum gravity (LQG) point to required interactions and potentials. Interaction potentials for strings or loop quanta of any dimension allow a solid, decoherent state of quanta challenging to calculate. However, if we introduce here the heuristic that any type of physical interaction of strings corresponds just to a type of calculation, there is already since 1898 the Hurwitz theorem showing that then only 1D, 2D, 4D and 8D (octonions) allow complex or hypercomplex number calculations. No other hypercomplex numbers and hence dimensions or symmetries are possible to allow calculations without yielding divisions by zero. However, the richest solution allowed by the Hurwitz theorem, octonions, is actually the observed symmetry of our universe, E8. Standard physics such as condensation, crystallization and magnetization but also solid-state physics and quantum computing allow us to show an initial mathematical treatment of our new theory by LQG to describe the cosmological state transformations by equations, and, most importantly, point out routes to parametrization of free parameters looking at testable phenomena, experiments and formulas that describe processes of crystallization, protein folding, magnetization, solid-state physics and quantum computing. This is presented here for LQG, for string theory it would be more elegant but was too demanding to be shown here. Note: While my previous Opus server preprint "A new cosmology of a crystallization process (decoherence) from the surrounding quantum soup provides heuristics to unify general relativity and quantum physics by solid state physics" (https://doi.org/10.25972/OPUS-23076) deals with the same topics and basic formulas, this new version is improved: clearer in title, better introduction, more stringent in its mathematics and improved discussion of the implications including quantum computing, hints for parametrization and connections to LQG and other current cosmological efforts. This 5th of June 2021 version is again an OPUS preprint, but this will next be edited for Archives https://arxiv.org.}, language = {en} } @article{OpitzSchuwerkPaulusetal.2021, author = {Opitz, Timm and Schuwerk, Tobias and Paulus, Markus and Kloo, Daniela and Osterhaus, Christopher and Lesch, Klaus-Peter and Sodian, Beate}, title = {No links between genetic variation and developing theory of mind: A preregistered replication attempt of candidate gene studies}, series = {Developmental Science}, volume = {24}, journal = {Developmental Science}, number = {5}, doi = {10.1111/desc.13100}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-238812}, year = {2021}, abstract = {Genetic variability is being discussed as a source of inter-individual differences in Theory of Mind development. Previous studies documented an association between variations in DRD4 VNTR 48 bp, OXTR rs53576, COMT rs4680, and Theory of Mind task performance. As empirical evidence on these associations is sparse, we conducted a preregistered replication attempt of a study reporting a link between DRD4 VNTR 48 bp and false belief understanding in 50-month-old children [Lackner, C., Sabbagh, M. A., Hallinan, E., Liu, X., \& Holden, J. J. (2012). Developmental Science, 15(2), 272-280.]. Additionally, we attempted a replication of studies on the role of OXTR rs53576 and COMT rs4680 in Theory of Mind. In both replication attempts, we did not find any evidence for associations between the sampled genetic markers and Theory of Mind ability in a series of analyses. Extending the replication attempt of Lackner et al., we employed longitudinal data from several tasks and measurement points, which allowed us to run follow-up robustness checks with more reliable scores. These extensive analyses corroborated our null finding. This comprehensive non-replication is important to balance current research on genetic markers of Theory of Mind. In a combined evaluation of our own and previous studies, we point to substantial methodological issues that research on the genetic basis of Theory of Mind development faces. We conclude that these limitations currently prevent firm conclusions on genetic influences on Theory of Mind development.}, language = {en} } @phdthesis{Frischholz2021, author = {Frischholz, Sebastian}, title = {Resveratrol Counteracts IL-1β-mediated Impairment of Extracellular Matrix Deposition in 3D Articular Chondrocyte Constructs}, doi = {10.25972/OPUS-23745}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-237453}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {Articular cartilage is an exceptional connective tissue which by a network of fibrillar collagen and glycosaminoglycan (GAG) molecules allows both low- friction articulation and distribution of loads to the subchondral bone (Armiento et al., 2018, Ulrich-Vinther et al., 2003). Because of its very limited ability to self-repair, chondral defects following traumatic injury increase the risk for secondary osteoarthritis (OA) (Muthuri et al., 2011). Still, current OA treatments such as common nonsteroidal anti-inflammatory drugs (NSAIDs) and joint replacement primarily address end-stage symptoms (Tonge et al., 2014). As low-grade inflammation plays a pivotal role in the pathogenesis of OA (Robinson et al., 2016), there is a strong demand for novel therapeutic concepts, such as integrating application of anti-inflammatory agents into cartilage cell- based therapies in order to effectively treat OA affected joints in early disease stages. The polyphenolic phytoalexin resveratrol (RSV), found in the skin of red grapes, berries, and peanuts, has been shown to have effective anti-inflammatory properties (Shen et al., 2012). However, its long-term effects on 3D chondrocyte constructs cultured in an inflammatory environment with regard to tissue quality have remained unexplored so far. Therefore, in this study, pellets made from expanded porcine articular chondrocytes were cultured for 14 days with either the pro-inflammatory cytokine interleukin-1β (IL-1β) (1 - 10 ng/ml) or RSV (50 μM) alone, or a co-treatment with both agents. Constructs treated with chondrocyte medium only served as control. Treatment with IL-1β at 10 ng/ml resulted in a significantly smaller pellet size and reduced DNA content. However, RSV counteracted the IL-1β-induced decrease and significantly enhanced diameter and DNA content. Also, in terms of GAG deposition, treatment with IL-1β at 10 ng/ml resulted in a tremendous depletion of absolute GAG content and GAG/DNA. Again, RSV co-treatment counteracted the inflammatory stimulus and led to a partial recovery of GAG content. Histological analysis utilizing safranin-O staining confirmed these findings. Marked expression of the cartilage-degrading enzyme matrix metalloproteinase 13 (MMP13) was detected in IL-1β-treated pellets, but none upon RSV co- treatment. Moreover, co-treatment of IL-1β-challenged constructs with RSV significantly increased absolute collagen content. However, under non- inflammatory conditions, RSV induced gene expression and protein accumulation of collagen type X, a marker for undesirable hypertrophy. Taken together, in the present thesis, RSV was demonstrated to elicit marked beneficial effects on the extracellular matrix composition of 3D cartilaginous constructs in long-term inflammatory culture in vitro, but also induced hypertrophy under non-inflammatory conditions. Based on these findings, further experiments examining multiple concentrations of RSV under various inflammatory conditions appear desirable concerning potential therapeutic applicability in OA.}, subject = {Resveratrol}, language = {en} } @phdthesis{DomeneMoreno2021, author = {Domene Moreno, Christina}, title = {Beyond transfer? The acquisition of an L3 phonology by Turkish-German bilinguals}, doi = {10.25972/OPUS-23141}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-231411}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {Der Erwerb des phonologischen Systems einer Drittsprache wurde bisher vor allem vor dem Hintergrund zweier Fragen betrachtet: (a) Welche Sprache oder Sprachen werden in die Zielsprache transferiert und (b) welche Rolle spielen inner- und außersprachliche Faktoren dabei? Hier sind grunds{\"a}tzlich drei Szenarien denkbar, welche sich auch in den im Forschungsfeld vorherrschenden theoretischen Ans{\"a}tzen wiederfinden. Bei einem bilingualen Sprecher, also einem Sprecher mit zwei Hintergrundsprachen, ist erstens der ausschließliche Transfer einer der Hintergrundsprachen m{\"o}glich, wobei f{\"u}r die Vorhersage der Sprache, die am wahrscheinlichsten transferiert wird, verschiedene Parameter vorgeschlagen wurden, wie beispielsweise das typologische Verh{\"a}ltnis der Hintergrund- und Zielsprachen untereinander oder der Status einer der beiden Hintergrundsprachen als Erst- bzw. Zweitsprache. Weiterhin ist Transfer aus beiden Sprachen denkbar, bei dem ausschließlich „n{\"u}tzliche", das heißt den Zielspracherwerb unterst{\"u}tzende Strukturen transferiert werden. Drittens kann gemischter Transfer, also der Transfer verschiedener Strukturen, aus beiden Hintergrundsprachen angenommen werden, der allerdings nicht unbedingt positiv ist, sondern stattdessen von vielf{\"a}ltigen Faktoren konditioniert wird. In anderen Worten wird hier die M{\"o}glichkeit angenommen, Strukturen aus beiden Hintergrundsprachen in die Zielsprache zu transferieren. Dieser letzte Ansatz entspricht am besten den bisherigen Forschungsergebnissen des Felds: W{\"a}hrend sich bei Betrachtung verschiedener Sprachkombinationen und verschiedener (und verschiedenartiger) phonologischer Strukturen f{\"u}r sich genommen kein einheitliches Muster erkennen l{\"a}sst, wird deutlich, dass gemischter Transfer m{\"o}glich ist - dies kommt vor allem bei Studien zu graduellen phonetischen Ph{\"a}nomenen wie konkreter Vokalqualit{\"a}t oder Voice Onset Time zum Ausdruck. Bisherige Studien haben sich auf einzelne phonologische oder phonetische Ph{\"a}nomene beschr{\"a}nkt, anhand derer die entsprechenden Ans{\"a}tze {\"u}berpr{\"u}ft wurden. Bisher gibt es keine systematischen Untersuchungen mehrerer verschiedener Ph{\"a}nomene an denselben Sprechern. Da allerdings davon ausgegangen werden kann, dass phonologische Ph{\"a}nomene unterschiedliche strukturelle Eigenschaften haben, ist genau dies n{\"o}tig. Um also die Mechanismen des gleichzeitigen Transfers mehrerer Sprachen auf eine Zielsprache, und somit auch die Interaktion der Hintergrundsprachen in Multilingualen besser zu verstehen, m{\"u}ssen mehrere phonologische Strukturen an denselben Sprechergruppen und mit denselben Methoden untersucht werden. Diese Forschungsl{\"u}cke will die vorliegende Arbeit schließen. Hierf{\"u}r wurde der Erwerb des Lautsystems der Drittsprache Englisch durch t{\"u}rkisch-deutsch bilinguale Lerner untersucht. Es wurden phonologische Strukturen des Englischen zur Untersuchung ausgew{\"a}hlt, die entweder im Deutschen (aber nicht im T{\"u}rkischen), im T{\"u}rkischen (aber nicht im Deutschen), oder in keiner der beiden Hintergrundsprachen vorkommen. Diese Unterteilung sollte dazu dienen den potentiellen Einfluss der jeweiligen Hintergrundsprache auf die Zielsprache identifizieren zu k{\"o}nnen. In zwei Studien wurden jeweils die Perzeption und die Produktion der obengenannten Strukturen an t{\"u}rkisch-deutsch Bilingualen sowie an einer monolingual deutschen Kontrollgruppe getestet. Studie 1 testete junge Lerner des Englischen in den ersten Lernjahren, w{\"a}hrend Studie 2 Studierende der Englischen Sprach- und Literaturwissenschaft testete. Zus{\"a}tzlich wurden extralinguistische Faktoren und biographische Details erhoben. In den beiden Studien sollte beantwortet werden, ob sich bilinguale und monolinguale Testpersonen in der Perzeption und/oder der Produktion der Zielstrukturen unterscheiden, ob diese Unterschiede durch Transfer aus den Hintergrundsprachen zu erkl{\"a}ren sind und, falls dies nicht durchgehend der Fall ist, welche anderen strukturellen oder extralinguistischen Faktoren herangezogen werden k{\"o}nnen, um die Ergebnisse zu erkl{\"a}ren. Zudem sollte gepr{\"u}ft werden, inwieweit Perzeption und Produktion zusammenh{\"a}ngen und welchen Effekt fortschreitender Spracherwerb hat. Die Ergebnisse der beiden Studien dieser Arbeit best{\"a}tigen die Vermutung, die anhand der Kombination aus verschiedenen vorausgehenden Studien getroffen wurden: Transfer findet ausgehend von beiden Hintergrundsprachen statt, er kann positiv und negativ sein, und er wird von strukturellen Faktoren konditioniert. So zeigte sich im Vergleich ein deutlicher Einfluss - sowohl positiv wie auch negativ - des T{\"u}rkischen auf die Perzeption und Produktion des Englischen bei den bilingualen Sprechern, aber ebenso ein Einfluss des Deutschen. Weiterhin konnte der gleichzeitige Einfluss beider Hintergrundsprachen auf einzelne Strukturen belegt werden. Perzeption und Produktion stehen bei keiner der Sprechergruppen in einer direkten Korrelation, allerdings kann anhand der Ergebnisse Perzeption als einer der Faktoren angenommen werden, der einen Einfluss auf die Produktion der zielsprachlichen Struktur hat. Als weitere Faktoren konnten der Grad der Markiertheit der Struktur, ihre artikulatorische Komplexit{\"a}t sowie das Fehlen eines artikulatorischen Ankers identifiziert werden. Eine Verschiebung der Transferquellen fand zwischen den beiden Studien, also bedingt durch fortgeschrittenen Erwerb, nicht statt. Es konnte allerdings gezeigt werden, dass Nachteile, die aufgrund der Hintergrundsprachen den Sprechergruppen entstanden, in der {\"a}lteren Gruppe h{\"a}ufig ausgeglichen werden konnten. Die Erkl{\"a}rungsans{\"a}tze f{\"u}r das Autreten von CLI-Effekten waren abh{\"a}ngig von den Eigenschaften der einzelnen abgepr{\"u}ften Strukturen und konnten nicht systematisch verallgemeinert werden. Dies best{\"a}tigte die wenig einheitlichen Einzelergebnisse vorhergehender Studien f{\"u}r die Perzeption und Produktion mehrerer verschiedener phonologischer Strukturen durch dieselben Sprechergruppen. So konnten methodische oder gruppeninterne Gr{\"u}nde f{\"u}r die sich widersprechenden Ergebnisse erstmals ausgeschlossen werden. Im vorletzten Kapitel dieser Arbeit werden darauf aufbauend alternative Gr{\"u}nde f{\"u}r die Ergebnisse erarbeitet. Hierf{\"u}r wird das Konzept des komplexen verschachtelten (complex interlaced) eingef{\"u}hrt, das chaostheoretische Ans{\"a}tze mit der Annahme einer hierarchischen Bit-Struktur verbindet. Die vorliegende Arbeit tr{\"a}gt zu aktuellen Debatten im Bereich der Drittsprachforschung insofern bei, als dass sie als erste mehrere phonologische „Einheiten" (bits), also Phoneme, Allophone, Prozesse etc., an den gleichen Sprechern testet. Dadurch wurde deutlich, dass die konkrete Struktur phonologischer Systeme in den Mittelpunkt der Forschung zum Drittspracherwerb r{\"u}cken muss, damit vorhandene Muster erkennbar werden k{\"o}nnen. Zudem wird vorgeschlagen, verst{\"a}rkt auf Forschungsergebnisse und Theorien aus anderen Bereichen, wie beispielsweise dem Sprachwandel, der Variet{\"a}tenlinguistik und der Kontaktlinguistik zur{\"u}ckzugreifen, um letztendlich Forschung am Drittspracherwerb f{\"u}r den theoretischen Erkenntnisgewinn nutzbar zu machen.}, subject = {Englisch}, language = {en} } @phdthesis{Goos2021, author = {Goos, Carina}, title = {Nuclear periphery granules of trypanosomes - A characterization of composition and function}, doi = {10.25972/OPUS-23436}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-234368}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {The nuclear envelope serves as important mRNA surveillance system. In yeast and humans, several control mechanisms act in parallel to prevent nuclear export of unprocessed mRNAs. However, trypanosomes lack homologues to most of the proteins involved. In addition, gene expression in trypanosomes relies almost completely on post-transcriptional regulation as they transcribe mRNAs as long polycistrons, which are subsequently processed into individual mRNA molecules by trans-splicing. As trans-splicing is not error-free, unspliced mRNAs may be recognized and prevented from reaching the cytoplasm by a yet unknown mechanism. When trans-splicing is inhibited in trypanosomes, the formation of a novel RNA granule type at the cytoplasmic periphery of the nucleus, so called nuclear periphery granules (NPGs) was previously observed. To identify potential regulators of nuclear export control, changes in protein localization which occur when trans-splicing is inhibited, were globally analyzed during this work. For this, trypanosome nuclei were purified under conditions maintaining NPG attachment to the nucleus, in the absence and presence of trans-splicing. Mass spectrometry analyses identified 128 proteins which are specifically enriched in nuclear preparations of cells inhibited for trans-splicing. Amongst them are proteins, which change their localization to the nucleus or to the nuclear pores as well as many proteins that move into NPGs. Some of these proteins are promising candidates for nuclear export control proteins, as the changes in localization (to the nucleus or nuclear pores) were specific to the accumulation of unspliced mRNAs. The NPG proteome almost exclusively contains proteins involved in mRNA metabolism, mostly unique to trypanosomes, notably major translation initiation factors were absent. These data indicate that NPGs are RNP complexes which have started or completed nuclear export, but not yet entered translation. As a byproduct of these proteomic studies, a high-quality dataset of the yet unknown T. brucei nuclear proteome is provided, closing an important gap in knowledge to study trypanosome biology, in particular nuclear related processes. NPGs were characterized in more detail by microscopy. The granules are cytoplasmic and present in at least two different trypanosome life cycle stages. There are at least two distinct granule subsets, with differences in protein composition. A closer analysis of NPGs by electron microscopy revealed that the granules are electron dense structures, which are connected to nuclear pores by string-like structures. In order to approach the function of NPGs, on the one hand, the hypothesis that NPGs might be related to perinuclear germ granules of adult gonads of C. elegans was tested: we found no relation between the two granule types. On the other hand, initial single molecule mRNA FISH experiments performed in trypanosomes showed no accumulation of unspliced transcripts in NPGs, arguing against an involvement of the granules in mRNA quality control.}, subject = {Trypanosoma brucei}, language = {en} } @phdthesis{Strohmeier2021, author = {Strohmeier, Michael}, title = {FARN - A Novel UAV Flight Controller for Highly Accurate and Reliable Navigation}, doi = {10.25972/OPUS-22313}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-223136}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {This thesis describes the functional principle of FARN, a novel flight controller for Unmanned Aerial Vehicles (UAVs) designed for mission scenarios that require highly accurate and reliable navigation. The required precision is achieved by combining low-cost inertial sensors and Ultra-Wide Band (UWB) radio ranging with raw and carrier phase observations from the Global Navigation Satellite System (GNSS). The flight controller is developed within the scope of this work regarding the mission requirements of two research projects, and successfully applied under real conditions. FARN includes a GNSS compass that allows a precise heading estimation even in environments where the conventional heading estimation based on a magnetic compass is not reliable. The GNSS compass combines the raw observations of two GNSS receivers with FARN's real-time capable attitude determination. Thus, especially the deployment of UAVs in Arctic environments within the project for ROBEX is possible despite the weak horizontal component of the Earth's magnetic field. Additionally, FARN allows centimeter-accurate relative positioning of multiple UAVs in real-time. This enables precise flight maneuvers within a swarm, but also the execution of cooperative tasks in which several UAVs have a common goal or are physically coupled. A drone defense system based on two cooperative drones that act in a coordinated manner and carry a commonly suspended net to capture a potentially dangerous drone in mid-air was developed in conjunction with the project MIDRAS. Within this thesis, both theoretical and practical aspects are covered regarding UAV development with an emphasis on the fields of signal processing, guidance and control, electrical engineering, robotics, computer science, and programming of embedded systems. Furthermore, this work aims to provide a condensed reference for further research in the field of UAVs. The work describes and models the utilized UAV platform, the propulsion system, the electronic design, and the utilized sensors. After establishing mathematical conventions for attitude representation, the actual core of the flight controller, namely the embedded ego-motion estimation and the principle control architecture are outlined. Subsequently, based on basic GNSS navigation algorithms, advanced carrier phase-based methods and their coupling to the ego-motion estimation framework are derived. Additionally, various implementation details and optimization steps of the system are described. The system is successfully deployed and tested within the two projects. After a critical examination and evaluation of the developed system, existing limitations and possible improvements are outlined.}, subject = {Drohne }, language = {en} } @phdthesis{Schlegel2021, author = {Schlegel, Jan}, title = {Super-Resolution Microscopy of Sphingolipids and Protein Nanodomains}, doi = {10.25972/OPUS-22959}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-229596}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {The development of cellular life on earth is coupled to the formation of lipid-based biological membranes. Although many tools to analyze their biophysical properties already exist, their variety and number is still relatively small compared to the field of protein studies. One reason for this, is their small size and complex assembly into an asymmetric tightly packed lipid bilayer showing characteristics of a two-dimensional heterogenous fluid. Since membranes are capable to form dynamic, nanoscopic domains, enriched in sphingolipids and cholesterol, their detailed investigation is limited to techniques which access information below the diffraction limit of light. In this work, I aimed to extend, optimize and compare three different labeling approaches for sphingolipids and their subsequent analysis by the single-molecule localization microscopy (SMLM) technique direct stochastic optical reconstruction microscopy (dSTORM). First, I applied classical immunofluorescence by immunoglobulin G (IgG) antibody labeling to detect and quantify sphingolipid nanodomains in the plasma membrane of eukaryotic cells. I was able to identify and characterize ceramide-rich platforms (CRPs) with a size of ~ 75nm on the basal and apical membrane of different cell lines. Next, I used click-chemistry to characterize sphingolipid analogs in living and fixed cells. By using a combination of fluorescence microscopy and anisotropy experiments, I analyzed their accessibility and configuration in the plasma membrane, respectively. Azide-modified, short fatty acid side chains, were accessible to membrane impermeable dyes and localized outside the hydrophobic membrane core. In contrast, azide moieties at the end of longer fatty acid side chains were less accessible and conjugated dyes localized deeper within the plasma membrane. By introducing photo-crosslinkable diazirine groups or chemically addressable amine groups, I developed methods to improve their immobilization required for dSTORM. Finally, I harnessed the specific binding characteristics of non-toxic shiga toxin B subunits (STxBs) and cholera toxin B subunits (CTxBs) to label and quantify glycosphingolipid nanodomains in the context of Neisseria meningitidis infection. Under pyhsiological conditions, these glycosphingolipids were distributed homogenously in the plasma membrane but upon bacterial infection CTxB detectable gangliosides accumulated around invasive Neisseria meningitidis. I was able to highlight the importance of cell cycle dependent glycosphingolipid expression for the invasion process. Blocking membrane accessible sugar headgroups by pretreatment with CTxB significantly reduced the number of invasive bacteria which confirmed the importance of gangliosides for bacterial uptake into cells. Based on my results, it can be concluded that labeling of sphingolipids should be carefully optimized depending on the research question and applied microscopy technique. In particular, I was able to develop new tools and protocols which enable the characterization of sphingolipid nanodomains by dSTORM for all three labeling approaches.}, subject = {Sphingolipide}, language = {en} } @phdthesis{Classen2021, author = {Claßen, Alexandra}, title = {The ERK-cascade in the pathophysiology of cardiac hypertrophy}, doi = {10.25972/OPUS-22966}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-229664}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {ERK1/2 are known key players in the pathophysiology of heart failure, but the members of the ERK cascade, in particular Raf1, can also protect the heart from cell death and ischemic injury. An additional autophosphorylation (ERK1 at Thr208, ERK2 at Thr188) empowers ERK1/2 translocation to the nucleus and phosphorylation of nuclear targets which take part in the development of cardiac hypertrophy. Thereby, targeting this additional phosphorylation is a promising pharmacological approach. In this thesis, an in silico model of ERK cascade in the cardiomyocyte is introduced. The model is a semi-quantitive model and its behavior was tested with different softwares (SQUAD and CellNetAnalyzer). Different phosphorylation states of ERK1/2 as well as different stimuli can be reproduced. The different types of stimuli include hypertrophic as well as non-hypertrophic stimuli. With the introduced in-silico model time courses and synergistic as well as antagonistic receptor stimuli combinations can be predicted. The simulated time courses were experimentally validated. SQUAD was mainly used to make predictions about time courses and thresholds, whereas CNA was used to analyze steady states and feedback loops. Furthermore, new targets of ERK1/2 which partially contribute, also in the formation of cardiac hypertrophy, were identified and the most promising of them were illuminated. Important further targets are Caspase 8, GAB2, Mxi-2, SMAD2, FHL2 and SPIN90. Cardiomyocyte gene expression data sets were analyzed to verify involved components and to find further significantly altered genes after induced hypertrophy with TAC (transverse aortic constriction). Changes in the ultrastructure of the cardiomyocyte are the final result of induced hypertrophy.}, subject = {Herzhypertrophie}, language = {en} } @phdthesis{Dodt2021, author = {Dodt, Katharina Anna}, title = {Monitoring enzyme activity by using mass-encoded peptides and multiplexed detection}, doi = {10.25972/OPUS-22937}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-229377}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {Cell culture models are helpful tools to study inflammatory diseases, like rheumatoid arthritis (RA), osteoarthritis (OA), arteriosclerosis or asthma, which are linked to increased matrix metalloproteinase (MMP) activity. Such cell culture models often focus on the secretion of cytokines and growth factors or the direct effects of disease on tissue destruction. Even though the crucial role of MMPs in inflammatory diseases is known, the results of MMP studies are contradictious and the use of MMPs as biomarkers is inconsistent. MMPs play an important role in disease pathology, as they are involved in elastin degradation in the walls of alveoli in chronic obstructive pulmonary disease (COPD), tumor angiogenesis and metastasis and in cartilage and bone degradation in arthropathies. In RA and OA MMPs are secreted by osteocytes, synoviocytes, and by infiltrating immune cells in response to the increased concentration of inflammatory mediators, like growth factors and cytokines. MMPs are zinc and calcium-dependent proteinases and play an important role in physiological and pathological extracellular matrix (ECM) turn over. Their substrate specificity gives them the ability to degrade all major ECM components, like aggrecan, elastin, gelatin, fibronectin and all types of collagen even the triple helix of collagen monomers. The ECM consists of two large three-dimensional cross-linked macromolecule classes: one are fibrous proteins, like collagen and elastin fibers that are responsible for ECM's structure, tensile strength, resiliency, reversible extensibility, and deformability and the second class is comprised of proteoglycans composed of glycosaminoglycan (GAG) chains covalently attached to protein cores that are multifunctionally involved in signaling pathways and cell interactions. ECM is present within all tissues and organs and changes in ECM structure contribute to pathogenesis, e.g. wounded and fibrotic tissue, COPD or tumours. This thesis primarily focuses on the development of a diagnostic peptide system, that enables to gain information on MMP activity from ECM by deploying the isobaric mass encoding strategy. The core element of the developed system is an isotopically labelled peptide sequence (mass tag), that is released in response to elevated levels of MMPs and allows multiplexed detection in tandem mass spectrometry (LC-MS/MS). The mass reporters possess a modular structure with different functionalities. C-terminal either a transglutaminase (TG) recognition sequence or a high molecular weight polyethylene glycol (PEG) moiety was attached to immobilize the mass reporters covalently or physically at the injection site. The following matrix metalloproteinase substrate sequence (MSS) is incorporated in two different versions with different sensitivity to MMPs. The MSS were applied in pairs for relative quantification consisting of the cleavable version synthesized with natural L-amino acids and the non-cleavable D-amino acid variant. The mass tag was synthesized with isotopically labelled amino acids and is separated from the MSS by a UV light-sensitive molecule. N-terminal the mass tag is followed by a tobacco etch virus protease (TEV) sensitive sequence, that is responsible to separate the mass tag from the affinity tag, which was either the Strep-tag II sequence or biotin and were added for purification purposes. Chapter 1 presents a step-by-step protocol on how to design a mass tag family allowing for multiplexed analysis by LC-MS/MS. The multiplexing is achieved by developing an isobar mass tag family with four family members, which are chromatographically indistinguishable, but due to the mass encoding principles they fragment in distinct y-type ions with a mass difference of 1 or 2 Da each in MS2. Furthermore, it is explained how to covalently attach the mass reporter peptides onto ECM by the activated calcium-catalyzed blood coagulation transglutaminase factor XIII (FXIIIa). The lysine of mass reporter's TG sequence (D-domain of insulin-like growth factor-I (IGF-I)) and a glutamine in fibronectin are covalently crosslinked by FXIIIa and build an isopeptide bond. Elevated levels of MMP release the mass reporters from ECM by recognizing the inter-positioned MSS. The designed mass reporters were able to monitor enzyme activity in an in vitro setting with cell-derived ECM, which was shown in Chapter 2. The modular structured mass reporters were investigated in a proof of concept study. First, the different modules were characterized in terms of their MMP responsiveness and their sensitivity to TEV protease and UV light. Then the FXIIIa-mediated coupling reaction was detailed and the successful coupling on ECM was visualized by an immunosorbent assay or confocal laser scanning microscopy. Finally, the immobilized mass reporters on ECM were incubated with MMP-9 to investigate their multiplexing ability of MMP activity. The cleaved mass reporter fragments were purified in three steps and mass tags were analyzed as mix of all four in LC-MS/MS. Chapter 3 describes the change from an immobilizing system as seen in chapter 1 and 2 to a soluble enzyme activity monitoring system that was applied in an osteoarthritic mouse model. Instead of the immobilizing TG sequence the C-terminal MMS was extended with two amino acids where one holds an azide moiety to perform a strain-promoted azide-alkyne cycloaddition to a high molecular weight dibenzocyclooctyne-polyethylene glycol (DBCO-PEG), which was chosen to retain the mass reporters at the injection site. Furthermore, the N-terminal affinity tag was extended with a 2.5 kDa PEG chain to increase the half-life of the mass reporter peptides after MMP release. The systems biocompatibility was proved but its enzyme monitoring ability in an in vivo setting could not be analyzed as samples degraded during shipping resulting from the Chinese customs blocking transport to Germany. In summary the diagnostic peptide system was developed in two variants. The immobilized version one from chapter 1 and 2 was designed to be covalently attached to ECM by the transglutaminase-mediated cross-linking reaction. In an in vitro setting the functionality of the mass reporter system for the detection of MMP activity was successfully verified. The second variant comprises of a soluble mass reporter system that was tested in an OA mouse model and showed biocompatibility. With these two designed systems this thesis provides a flexible platform based on multiplexed analysis with mass-encoded peptides to characterize cell culture models regarding their MMP activity, to deploy cell-derived ECM as endogenous depot scaffold and to develop a mass tag family that enables simultaneous detection of at least four mass tags.}, subject = {Extrazellul{\"a}re Matrix}, language = {en} } @article{LauererTiedemannPolaketal.2021, author = {Lauerer, Elias and Tiedemann, Elena and Polak, Thomas and Simmenroth, Anne}, title = {Can smoking cessation be taught online? A prospective study comparing e-learning and role-playing in medical education}, series = {International Journal of Medical Education}, volume = {12}, journal = {International Journal of Medical Education}, doi = {10.5116/ijme.5ff9.bccc}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-230056}, pages = {12-21}, year = {2021}, abstract = {Objectives: We compared the effect of different didactic formats - e - learning and role-playing - on medical students' knowledge and counselling skills in smoking cessation training. Methods: At a German medical school, 145 third-year students were randomly allocated to attend an online course with video examples or an attendance course with role-playing. Students were trained in smoking cessation counselling according to the 5A's (ask, advise, assess, assist, arrange) for approximately 90 minutes. Practical skills were measured in an objective structured clinical examination (OSCE) and represent the primary endpoint of this prospective comparative study. Additionally, changes in theoretic knowledge were assessed by pre - and post - interventional questionnaires and a final written exam. Results: In the OSCE, overall scores were higher in the attendance group (Mdn=70.8 \% vs. 62.8 \%; U=119; p=.087, n=36), but a statistical advantage was only found in one single counselling sequence ("Assist": Mdn=66.7 \% vs. 51.4 \%; p = .049) and the rating of the standardised patients (M=4.7 vs. 4.2 out of 5 points, t(27.836)=2.0, p=.028). Students' results (n=130) from self-assessment and written exams suggest that both approaches are equally well suited to increase theoretical knowledge. The online course was more time efficient (90 vs. 73 minutes). Conclusions: Seminar and web-based training seem equally well suited for transferring knowledge and skills on tobacco cessation counselling. Considering their particular strengths, these two teaching approaches could be combined.}, language = {en} }