@phdthesis{Polleichtner2006,
  author    = {Polleichtner, Johann Georg},
  title     = {Studies of structure-function relationship of components of multidrug efflux pumps and type I secretion systems},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-18671},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2006},
  abstract  = {This work deals with channel-tunnel dependent multidrug efflux pumps and type I secretion systems, more concrete with the improved classification of the adaptor protein family, the characterization of the TolC-homologue protein HI1462 of Haemophilus influenzae, and the molecular characterization of the interaction between TolC and AcrA of Escherichia coli.},
  subject      = {Gram-negative Bakterien},
  language  = {en}
}
@phdthesis{Klueh2006,
  author    = {Kl{\"u}h, Katharina},
  title     = {Primary Phosphine Halfsandwich Complexes of Iron and Ruthenium - Synthesis and Hydrophosphination Reactions},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-18603},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2006},
  abstract  = {Die Hydrophosphinierung stellt eine wertvolle Synthesem{\"o}glichkeit zum Aufbau von prim{\"a}ren, sekund{\"a}ren und terti{\"a}ren Phosphanen dar. In dieser Arbeit wird die Synthese verschiedener Prim{\"a}r-Phosphan-Komplexes des Eisens und Ruthenium beschrieben. Untersucht wurden ihre Reaktivit{\"a}t bez{\"u}glich Hydrophosphinierungsreaktionen sowie den Einfluss verschiedener Liganden z.B. bidentate Phosphanliganden und hemilabilen Liganden.},
  subject      = {Phosphine},
  language  = {en}
}
@phdthesis{Prusko2006,
  author    = {Prusko, Carsten Dietmar},
  title     = {Evolutionary Diversification of Protein Functions : From Translation in Prokaryotes to Innate Immunity in Invertebrates},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-18517},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2006},
  abstract  = {With the progress in sequencing of the honey bee genome new data become available which allows the search and identification of genes coding for homologous proteins found in other organism. Two genes coding for c-type lysozymes were identified in the genome of A. mellifera through an online-based BLAST search. Expression of both intron-less genes seems not to be under the regulatory control of either of the two pathways involved in humoral insect immunity, i.e. Toll and Imd, since no NF-\&\#954;B transcription factor binding sites are found upstream of the genes. The encoded Lys-1 and Lys-2 are 157 and 143 amino acid long, respectively, and share a sequence similarity of 90\%. Further in silico analysis revealed a signal peptidase cleavage site at the N-terminus of each amino acid sequence, strongly suggesting a secretion of the enzymes into the surrounding environment of the producing cells. Sequence alignments of both amino acid sequences with other c-type lysozymes identified the highly conserved active site glutamic acid (Glu32) as well as eight highly conserved cysteine residues. However, an important aspartic acid (Asp50) in the active site that helps to stabilize a substrate intermediate during catalysis is replaced by a serine residue in the lysozymes of A. mellifera. The replacement of the active site aspartic acid in the honey bee lysozymes suggests a different catalytic mechanism and/or a different substrate-specificity in respect to other c-type lysozymes. Furthermore, 3D-models of Lys-1 and Lys-2 were generated based on the sequence similarity of A. mellifera lysozymes with other c-type lysozymes. The published 3D structure of the lysozyme from the silkmoth Bombyx mori, which shares the highest sequence similarity of all available structures with A. mellifera lysozymes, was used as template for the construction of the 3D-models. The models of Lys-1 and Lys-2 suggest that both enzymes resemble, in large part, the structure of B. mori lysozyme. In order to identify the set of AMPs in the hemolymph of A. mellifera, hemolymph of immunized bees was analyzed. Applying SDS-polyacrylamide gel electrophoresis and mass spectrometry on hemolymph from immunized bees, three out of the four peptides were identified, i.e. abaecin, defensin 1 and hymenoptaecin. Furthermore, Lys-2 was identified in the hemolymph by mass spectrometry, conclusively demonstrating the presence of a lysozyme in the hemolymph of A. mellifera for the first time. However, the protein levels of Lys-2 were not affected by bacterial injection, suggesting that the gene expression of the putative antibacterial protein is not under the regulatory control of the Imd and/or Toll pathway. Besides the abovementioned antimicrobial peptides, the 76 kDa large transferrin was also identified. Transferrin is an iron-binding protein that has been implicated in innate immunity in the honey bee. Furthermore, the effect of pathogenic dose, the timeline of peptide induction and the age-related accumulation of the aforementioned AMPs were studied. The intensity of expression of the antimicrobial peptides, abaecin, defensin 1, and hymenoptaecin as well as transferrin increased proportionally with the amount of bacteria injected into the hemocoel. No such effect was observed for the protein levels of Lys-2. Furthermore, up-regulation of the three antibacterial peptides and transferrin was observed within the first 24 h following infection with E. coli (gram-). Infection with the gram+ bacterium Micrococcus flavus resulted in high and moderate protein levels for transferrin and abaecin, respectively, whereas hardly any accumulation of hymenoptaecin was observed, indicating that the gene expression of abaecin and transferrin is somehow positively correlated, and would suggest a shared regulatory pathway that differs from that of hymenoptaecin. Although bacterial infections didn't seem to stimulate the production of Lys-2, different concentrations in the hemolymph were observed in bees of different ages, suggesting a correlation between the expression of Lys-2 and the age-related division of labor of adult worker honey bees, also known as age polyethism. The results further allow a proposed causal connection between the age-dependent accumulation of Lys-2 and the hemolymph titer of the gonotrophic hormone juvenile hormone, which is the "behavioral pacemaker" in adult honey bees.},
  subject      = {Biene},
  language  = {en}
}
@phdthesis{Ernst2006,
  author    = {Ernst, Raffael},
  title     = {Anuran communities on the cutting edge : Analysing patterns and processes in anthropogenically altered tropical forests - Studies from the Guiana Shield and West Africa},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-18373},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2006},
  abstract  = {Summary Timber harvesting is currently the most common commercial utilisation activity in tropical forests. Assessing the effects of logging on different aspects of biodiversity and general ecosystem properties is hence of prime importance if the few remaining areas of intact tropical forest are to be protected effectively and efficiently. Tropical amphibian communities are an appropriate model system for studies on the impacts of human-induced environmental changes on the dynamics of complex biological systems. This thesis elaborates on patterns of diversity changes in tropical forest amphibian communities facing habitat alterations associated with selective logging in two globally important eco-regions (C{\^o}te d'Ivoire, Upper Guinea, West Africa and Guyana, the Guiana Shield, northern South America). The thesis is organised along two main themes. After a general introduction, a section on general methodology and an introduction to the model systems studied, the first theme moves from general patterns to underlying processes. A second theme running through both chapters carries from undisturbed systems to disturbed systems. A final section integrates findings and addresses implications for conservation management of anthropogenically altered tropical forests. Several case studies at the species- population and community level are being presented and data on the direct and indirect impacts of anthropogenic habitat alteration on respective organizational levels are provided. A key statement that is stressed on throughout the studies is the fact that common measures of diversity, such as species richness and species-diversity only inadequately reflect processes of diversity change following anthropogenic disturbance. They also fail to describe actual impacts on the dynamics of complex biological systems. It is argued that commonly used measures produce an incoherent and insufficient picture of diversity patterns and the underlying processes that shape these patterns. Thus, an understanding of higher levels of diversity, such as \&\#946;-diversity and functional diversity (and hence compositional patterns) appears to be the key to effectively mitigating the impacts of human-induced disturbance on amphibian communities. It is shown that the predictability of amphibian community composition depends on the respective level of anthropogenic disturbance imposed on a particular habitat. Hence, human activities that lead to changes in the structure of a forest, such as logging, not only alter simple system descriptors, such as the number of species in a given community, but rather alter the dynamics of the entire system. In this context, functional diversity is shown to be an important aspect underlying the actual mechanism that leads to the observed change of predictability patterns. Functional differences between species, rather than number of species per se appear to be the decisive factor in sustaining desirable ecosystem states and thus in maintaining important ecosystem services. Because biological diversity appears to play a substantial role in ecosystem resilience required to safeguard essential ecosystem functions in the face of environmental change, the thesis calls for a critical revision of common diversity assessments approaches. The studies advocate the reconsideration of the uncritical use of widespread measures and descriptors of biodiversity on grounds of inconsistent patterns found throughout numerous studies, including those presented herein.},
  subject      = {Tropischer Regenwald},
  language  = {en}
}
@phdthesis{Michel2006,
  author    = {Michel, Ren{\´e}},
  title     = {Simulation and Estimation in Multivariate Generalized Pareto Models},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-18489},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2006},
  abstract  = {The investigation of multivariate generalized Pareto distributions (GPDs) in the framework of extreme value theory has begun only lately. Recent results show that they can, as in the univariate case, be used in Peaks over Threshold approaches. In this manuscript we investigate the definition of GPDs from Section 5.1 of Falk et al. (2004), which does not differ in the area of interest from those of other authors. We first show some theoretical properties and introduce important examples of GPDs. For the further investigation of these distributions simulation methods are an important part. We describe several methods of simulating GPDs, beginning with an efficient method for the logistic GPD. This algorithm is based on the Shi transformation, which was introduced by Shi (1995) and was used in Stephenson (2003) for the simulation of multivariate extreme value distributions of logistic type. We also present nonparametric and parametric estimation methods in GPD models. We estimate the angular density nonparametrically in arbitrary dimension, where the bivariate case turns out to be a special case. The asymptotic normality of the corresponding estimators is shown. Also in the parametric estimations, which are mainly based on maximum likelihood methods, the asymptotic normality of the estimators is shown under certain regularity conditions. Finally the methods are applied to a real hydrological data set containing water discharges of the rivers Altm{\"u}hl and Danube in southern Bavaria.},
  subject      = {Pareto-Verteilung},
  language  = {en}
}
@phdthesis{Pahlen2005,
  author    = {Pahlen, Federico von der},
  title     = {Polarization and Spin Effects in Production and Decay of Charginos and Neutralinos at a Muon Collider},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-18421},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2005},
  abstract  = {The mechanism of spontaneous symmetry breaking is essential to provide masses to the W and Z gauge bosons and fermions of the SM. We hope to elucidate this mechanism at the next generation of colliders. While the SM has been tested with astonishing precision it is believed to be an effective theory of a more fundamental Great Unified Theory. SUSY is one of the most attractive extensions of the SM of particle physics. Therefore, the search for SUSY is a top priority at the next generation of colliders. Once Higgs bosons are discovered, a precise determination of their properties is necessary to differentiate between different models, in particular the MSSM. A muon collider, running at center of mass energies around the neutral Higgs boson resonances, would allow precise measurements of masses and widths, as well as the couplings to their decay products. In particular their couplings to supersymmetric particles are essential to probe SUSY. Therefore, we study the decays of the heavier CP-even and CP-odd Higgs bosons into lighter chargino or neutralino pairs. In this thesis we have analyzed the polarization effects of the beams and the charginos and neutralinos produced in mu+ mu- annihilation around the center of mass energies of the Higgs boson resonances H and A. For the production of equal charginos we have shown that the ratio of H-chargino and A-chargino couplings can be precisely determined independently of the chargino decay mechanism. This method avoids reference to other experiments and makes only a few model-dependent assumptions. Here we have analyzed the effect of the energy spread and of the error from the non-resonant channels, including an irreducible standard model background contribution. For small tan(beta) the process yields large cross sections of up to a pb. For the production of two different charginos we have shown that the H-A interference can be analyzed using asymmetries of the charge conjugated processes. The asymmetries depend on the muon longitudinal beam polarizations and vanish for unpolarized beams. For the chargino pair production with subsequent two-body decay of one of the charginos we have shown that charge and beam polarization asymmetries in the energy distributions of the decay particles are sensitive to the interference of scalar exchange channels with different CP quantum numbers. This process provides unique information on the interference of overlapping Higgs boson resonances. The effect is larger for regions of parameter space with intermediate values of tan(beta) and light sleptons or LSP neutralinos. For the chargino pair production with subsequent two-body decays of both charginos we have defined energy distribution and angular asymmetries in the final particles, in order to analyze the spin-spin correlations of the charginos. The transverse polarizations of the charginos are sensitive to the CP quantum number of the exchanged Higgs bosons and can thus be used to separate overlapping resonances, as well as to determine the CP quantum number of a single resonance. For equal charginos, these asymmetries are not sensitive to the interference of CP-even and CP-odd Higgs exchange channels. For the neutralino pair production in mu+ mu- annihilation we study similar processes as for chargino production. Line shape measurements of neutralino pair production allow to precisely determine the ratio of H-neutralino and A-neutralino couplings. Neutralino pair production with subsequent two-body decay of one of the neutralinos in the intermediate tan(beta) region is sensitive to the interference of H and A and may be measured with a large statistical significance. The Majorana nature of the neutralinos implies that the beam polarization asymmetries vanish for the remaining production channels. For neutralino pair production with subsequent two-body decays of both neutralinos we analyze similar observables as in chargino production. The main difference consists in the intrinsic relative CP quantum number of the neutralino pair, which depends on the chosen scenario. We have thus shown that the interaction of the Higgs bosons to the gaugino-higgsino sector can be probed at a muon collider in chargino and neutralino pair production, both analyzing the production line-shape around the resonances as well as studying the chargino and neutralino polarizations via their decays.},
  subject      = {Neutralino},
  language  = {en}
}
@phdthesis{Slobodskyy2005,
  author    = {Slobodskyy, Anatoliy},
  title     = {Diluted magnetic semiconductor Resonant Tunneling Structures for spin manipulation},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-18263},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2005},
  abstract  = {In this work we investigate magnetic resonant tunneling diode (RTD) structures for spin manipulation. All-II-VI semiconductor RTD structures based on [Zn,Be]Se are grown by molecular beam epitaxy. We observe a strong, magnetic field induced, splitting of the resonance peaks in the I-V characteristics of RTDs with [Zn,Mn]Se diluted magnetic semiconductors (DMS) quantum well. The splitting saturates at high fields and has strong temperature dependence. A phonon replica of the resonance is also observed and has similar behaviour to the peak. We develop a model based on the giant Zeeman splitting of the spin levels in the DMS quantum well in order to explain the magnetic field induced behaviour of the resonance.},
  subject      = {Resonanz-Tunneldiode},
  language  = {en}
}
@phdthesis{Cruz2006,
  author    = {Cruz, Alexandre Bettencourt da},
  title     = {Molecular and functional characterization of the swiss-cheese and olk mutants in Drosophila melanogaster : two approaches to killing neurons},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-17734},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2006},
  abstract  = {In this thesis two genes involved in causing neurodegenerative phenotypes in Drosophila are described. olk (omb-like), a futsch allele, is a micotubule associated protein (MAP) which is homologous to MAP1B and sws (swiss cheese) a serine esterase of yet unknown function within the nervous system. The lack of either one of these genes causes progressive neurodegeneration in two different ways. The sws mutant is characterized by general degeneration of the adult nervous system, glial hyperwrapping and neuronal apoptosis. Deletion of NTE (neuropathy target esterase), the SWS homolog in vertebrates, has been shown to cause a similar pattern of progressive neural degeneration in mice. NTE reacts with organophosphates causing axonal degeneration in humans. Inhibition of vertebrate NTE is insufficient to induce paralyzing axonal degeneration, a reaction called "aging reaction" is necessary for the disease to set in. It is hypothesized that a second "non-esterase" function of NTE is responsible for this phenomenon. The biological function of SWS within the nervous system is still unknown. To characterize the function of this protein several transgenic fly lines expressing different mutated forms of SWS were established. The controlled expression of altered SWS protein with the GAL4/UAS system allowed the analysis of isolated parts of the protein that were altered in the respective constructs. The characterization of a possible non-esterase function was of particular interest in these experiments. One previously described aberrant SWS construct lacking the first 80 amino acids (SWS\&\#916;1-80) showed a deleterious, dominant effect when overexpressed and was used as a model for organophosphate (OP) intoxication. This construct retains part of its detrimental effect even without catalytically active serine esterase function. This strongly suggests that there is another characteristic to SWS that is not defined solely by its serine esterase activity. Experiments analyzing the lipid contents of sws mutant, wildtype (wt) and SWS overexpressing flies gave valuable insights into a possible biological function of SWS. Phosphatidylcholine, a major component of cell membranes, accumulates in sws mutants whereas it is depleted in SWS overexpressing flies. This suggests that SWS is involved in phosphatidylcholine regulation. The produced \&\#945;-SWS antibody made it possible to study the intracellular localization of SWS. Images of double stainings with ER (endoplasmic reticulum) markers show that SWS is in great part localized to the ER. This is consistent with findings of SWS/ NTE localization in yeast and mouse cells. The olk mutant also shows progressive neurodegeneration but it is more localized to the olfactory system and mushroom bodies. Regarding specific cell types it seemed that specifically the projection neurons (PNs) are affected. A behavioral phenotype consisting of poor olfactory memory compared to wt is also observed even before histologically visible neurodegeneration sets in. Considering that the projection neurons connect the antennal lobes to the mushroom bodies, widely regarded as the "learning center", this impairment was expected. Three mutants where identified (olk1-3) by complementation analysis with the previously known futschN94 allele and sequencing of the coding sequence of olk1 revealed a nonsense mutation early in the protein. Consistent with the predicted function of Futsch as a microtubule associated protein (MAP), abnormalities are most likely due to a defective microtubule network and defects in axonal transport. In histological sections a modified cytoskeletal network is observed and western blots confirm a difference in the amount of tubulin present in the olk1 mutant versus the wt. The elaboration of neuronal axons and dendrites is dependent on a functional cytoskeleton. Observation of transport processes in primary neural cultures derived from olk1 mutant flies also showed a reduction of mitochondrial transport. Interaction with the fragile X mental retardation gene (dfmr1) was observed with the olk mutant. A dfmr1/ olk1 double mutant shows an ameliorated phenotype compared to the olk1 single mutant. tau, another MAP gene, was also shown to be able to partially rescue the olk1 mutant.},
  subject      = {Taufliege},
  language  = {en}
}
@phdthesis{Hartung2006,
  author    = {Hartung, Anke},
  title     = {Localization of BMP receptors in distinct plasma membrane domains and its impact on BMP signaling},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-18360},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2006},
  abstract  = {Endocytosis of growth factor receptors plays an important role in the activation and propagation as well as the attenuation of signaling pathways. Its malfunctioning can cause several pathologies, e.g. by controlling the level of receptors at the cell surface. BMPs are members of the TGF-ß superfamily and are involved in the regulation of proliferation, differentiation, chemotaxis and apoptosis. BMP signaling is initiated at two types of transmembrane serine/threonine kinases, BRI and BRII. BMP receptor activation occurs upon ligand binding to preformed complexes (PFCs) or BMP2-induced signaling complexes (BISCs) composed of BRI and BRII. Binding of BMP2 to PFCs results in activation of the Smad pathway, whereas BISCs initiate the activation of Smad-independent pathways via p38 resulting in the induction of Alkaline phosphatase (ALP). BMP receptor endocytosis has not been extensively studied and the potential role of localization to different regions of the plasma membrane in determining the signaling pathways activated by PFCs and BISCs was not explored so far. In the present work, the localization of BMP receptors in distinct membrane domains and the consequential impact on BMP signaling were investigated. By separating detergent-resistant membranes (DRMs) from cell lysates and subsequent gradient ultracentrifugation, it could be demonstrated that BRI and BRII cofractionate with cav-1, the marker protein of caveolae. Moreover, both receptor types interacted with cav-1 and showed a partially colocalization with cav-1 at the plasma membrane. Although these results point to a caveolar localization, BMP receptors cofractionated also with DRMs in cells exhibiting no caveolae, suggesting an additional non-caveolar raft localization. Beyond that, BRII could also be localized to clathrin-coated pits (CCPs) by means of immuno-electronmicroscopy studies. The second part of this thesis demonstrated that both membrane regions influence BMP signaling in distinct ways. Smad1/5 was shown to be phosphorylated independently of endocytic events at the cell surface. On the one hand, disruption of DRM regions by cholesterol depletion inhibited specifically BMP2-mediated ALP production, while Smad signaling was unaffected. On the other hand, inhibition of clathrin-mediated endocytosis by specific inhibitors affected BMP2-induced Smad signaling as well as the induction of ALP, suggesting that both Smad-dependent and Smad-independent signaling pathways are required for BMP2 induced ALP production. These findings propose an important regulatory impact of different endocytic routes and membrane regions on BMP signaling as well as that a distinct membrane localization of BMP receptors account for specific signaling properties initiated at PFCs or BISCs.},
  subject      = {Knochen-Morphogenese-Proteine},
  language  = {en}
}
@phdthesis{Xiang2006,
  author    = {Xiang, Chaomei},
  title     = {The role of B-RAF in embryonic development of mouse forebrain},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-18326},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2006},
  abstract  = {Die Familie der RAF-Kinasen umfasst drei Mitglieder, A-RAF, B-RAF und C-RAF. Nur f{\"u}r die B-RAF-Isoform wurde eine wichtige Funktion f{\"u}r die Entwicklung des Zentralen Nervensystems (ZNS) gefunden. Das Fehlen von B-RAF f{\"u}hrt bei neu generierten embryonalen Neuronen zum Zelltod, weil sie in vitro nicht auf {\"u}berlebensfaktoren reagieren k{\"o}nnen. Bei einer zweiten Zelllinie, die durch die Abwesenheit von B-RAF beeintr{\"a}chtigt ist, handelt es sich um endotheliale Zellen. Ihr Zelltod f{\"u}hrt zu inneren Blutungen und zu Letalit{\"a}t von B-RAF-/--M{\"a}usen zwischen Tag 10.5 (E10.5) und 12.5 (E12.5) der Embryonalentwicklung. Dies verhinderte bisher weitere Untersuchungen der neuralen B-RAF-Funktion bei sp{\"a}teren Stadien. Im Gegensatz zu B-RAF-/--M{\"a}usen {\"u}berleben B-RAFKIN/KIN-M{\"a}use die Mitte der Embryonalentwicklung, da ihre Endothelzellen vor Apoptose gesch{\"a}tzt sind. Diese Tiere besitzen kein B-RAF, stattdessen wird im B-RAF-Locus ein chim{\"a}res Protein exprimiert, das den N-Terminus von B-RAF sowie alle Dom{\"a}nen von A-RAF umfasst. Der Schutz vor abnormaler neuraler Apoptose im Vorderhirn macht diese Tiere zu einem potentiellen Modell zur Untersuchung der Proliferations- und Differenzierungsfunktion von B-RAF, die die Kinase neben der {\"U}berlebensfunktion in der ZNS-Entwicklung aus{\"u}bt. Die detaillierte Untersuchung der B-RAFKIN/KIN-Tiere konzentrierte sich auf die Entwicklung der Hirnrinde. Augenscheinlich waren kortikale Defekte im B-RAFKIN/KIN Vorderhirn: Der Verlust von B-RAF f{\"u}hrte zu einer starken Reduzierung von Brn-2 exprimierenden pyramidalen Projektions-Neuronen begleitet von einer St{\"o}rung der Dendritenbildung mit weniger und d{\"u}nneren Dendriten in diesen oberen Schichten. Weitere Untersuchungen mit BrdU-Markierungsexperimenten zeigten in der ventrikul{\"a}ren Schicht reduzierte Zellproliferation f{\"u}r E14.5-E16.5 der Mutantenembryonen und ein Migrationsdefizit der sp{\"a}tgebideten kortikalen Neuronen. W{\"a}hrend der Proliferationsdefekt der Hirnrinden-Vorl{\"a}uferzellen mit einer reduzierten ERK-Aktivierung einherging, bleibt der Mechanismus der gest{\"o}rten neuralen Migration zu erkl{\"a}ren. Unsere Hypothese ist, dass die subzellul{\"a}re Lokalisation von Phospho-ERK in den wandernden Hirnrinden-Neuronen der B-RAFKIN/KIN-M{\"a}use ver{\"a}ndert sein k{\"o}nnte. Zur Best{\"a}igung der in vivo-Funktion von B-RAF und weiteren Studien zu ihrer unbekannten Rolle in der embryonalen Neurogenese sowie anderen Morphogenesen w{\"a}re die konditionale B-RAF Inaktivierung erforderlich. Durch die Deletion des genetischen Materials bzw. die Inaktivierung der Genfunktion in ausgew{\"i}?'½hlten Zellen zu einem bestimmten Zeitpunkt ließen sich die Embryo-Letalit{\"a}t sowie unerw{\"u}nschte pleiotrope Nebeneffekte vermeiden und akkumulierende, kompensierende Entwicklungsver{\"a}nderungen von Beginn an ausschließen. Um die Cre Rekombinase-Methode einsetzen zu k{\"o}nnen, wurden floxed B-RAF embryonale Stammzell (ES)-Zelllinien generiert. Außerdem wurde ein auf dem Tetrazyklin Operator basierendes Schaltallel in den B-RAF Genort von embryonalen Stammzellen integriert, so dass die B-RAF Expression konditional und reversibel durch die Zugabe von Doxyzyklin angeschaltet werden konnte. Bisher wurden hochgradige chim{\"a}re M{\"a}use nach Blastozysten-Injektion geboren. Die Keimbahn{\"u}bertragung dieser chim{\"a}ren M{\"a}use wird momentan untersucht. Wenn beide konditionale Mauslinien bereit sind, k{\"i}?'½nnte die Entwicklung ihres Zentralnervensystems untersucht werden, um die Rolle von B-RAF in der Entwicklung des Nervensystems herauszufinden.},
  subject      = {Maus},
  language  = {en}
}
@phdthesis{Stegmeier2006,
  author    = {Stegmeier, Johannes Friedrich},
  title     = {Study of Omp85 Family Proteins YaeT and YtfM and Multidrug Export Machineries in Escherichia coli},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-18171},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2006},
  abstract  = {In this study the Omp85 family proteins YaeT and YtfM of Escherichia coli were investigated by using biochemical and electrophysiological methods as well as bioinformatical and structural analysis. In addition, knock-out strains were constructed to further study the relevance of these proteins in vivo. The prediction that Omp85 proteins are composed of two domains, a periplasmic amino-terminal POTRA (polypeptide translocation associated) domain and a carboxy-terminal domain anchoring these proteins in the outer membrane, was confirmed by the construction of mutants. It could be shown that the carboxy-terminal part of the proteins is able to insert into the outer bacterial membrane, even if the POTRA domain is removed. Furthermore, pore-forming activity in the black-lipid bilayer was observed for both full-length proteins as well as their carboxy-terminal membrane located parts. The channels formed by both proteins in the black lipid bilayer showed variable single channel conductance states rather than a defined value for conductance. In 1M KCl, e.g. YaeT forms pores with a channel conductance of 100 to 600 pS containing a most abundant value at 400 pS. This variability is at least reasonable for YaeT due to a prerequisite flexibility of its channel for OMP insertion. YaeT was identified to form a cation selective, YtfM an anion selective channel, which is less pH dependent than YaeT. Another feature of the YaeT channel is that its selectivity and conductance is influenced by charged detergent molecules indicating an accumulation of these molecules in hydrophobic pockets inside the compact channel. YaeT revealed heat-modifiable mobility in SDS-PAGE which is characteristic for \&\#946;-barrel OMPs, whereas YtfM did not show this behaviour. This result could be explained by sequence alignment and structural comparison of YaeT and YtfM via CD and FTIR spectra displaying much higher \&\#946;-strand content for the carboxy-terminal part of YaeT compared to YtfM. Since the carboxy-terminal parts were shown to have pore forming ability and are inserted in the OM in vivo, the substitution of the essential protein YaeT by its carboxy-terminal mutant was attempted in a yaeT knock-out strain. The carboxy-terminal half of YaeT was not sufficient to compensate depletion of the full-length protein indicating an important role of the amino-terminus for cell viability. In contrary, YtfM is shown to be a non-essential protein and lack of YtfM had no effects on the composition and integrity of the OM. However, chromosomal deletion of ytfM remarkably reduced the growth rate of cells. This study provides the first detailed investigation of the structure of YaeT and describes its electrophysiological behaviour, which could be a basis for further studies of YaeT and its substrate proteins. Furthermore, YtfM was characterised and its in vivo function was investigated revealing YtfM as the second Omp85 family protein of importance in E. coli. In a second part of this study assembly and function of multidrug efflux pumps were investigated. Drug efflux pumps are tripartite export machineries in the cell envelope of Gram-negative bacteria conferring multidrug resistance and therefore causing severe problems for medical treatment of diseases. Protein structures of all three efflux pump components are solved, but the exact interaction sites are still unknown. Assembly of a hybrid exporter system composed of the Pseudomonas aeruginosa channel tunnel OprM, the E. coli adaptor protein AcrA and its associated transporter AcrB could be shown by chemical cross-linking, even though this efflux pump is not functional. Exchange of the hairpin domain of AcrA by the corresponding hairpin from the adaptor protein MexA of P. aeruginosa restored functionality tested by antibiotic sensitivity assays. This shows the importance of the MexA hairpin domain for functional interaction with the OprM channel tunnel. Interestingly, the hybrid protein was also able to assemble with TolC as outer membrane component to form a functional efflux pump indicating a higher flexibility of TolC compared to OprM concerning interaction partners. Based on these results, an interaction model of the hairpin domain and the channel tunnel on molecular level for AcrA and TolC as well as MexA and OprM, respectively, is presented. This model provides a basis for directed mutagenesis to reveal the exact contact sites of the hairpin of the adapter protein and the outer membrane component},
  subject      = {Escherichia coli},
  language  = {en}
}
@phdthesis{Glos2006,
  author    = {Glos, Julian},
  title     = {Amphibian communities of the dry forest of Western Madagascar : taxonomy, ecology and conservation},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-18146},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2006},
  abstract  = {In meiner Arbeit habe ich taxonomische, gemeinschafts{\"o}kologische und aut{\"o}kologische Aspekte im westmadagassischen Trockenwald untersucht. Ziel dieser Arbeit war es Antworten auf die Fragen zu geben wie die einzelnen Arten die Habitate in Raum und Zeit nutzen, welchen Einfluss abiotische Parameter, Austrocknungsrisiko der Laichgew{\"a}sser und Mikrohabitat haben und wie Pr{\"a}datoren die Gemeinschaft und das Verhalten einzelner Arten beeinflussen. Somit tr{\"a}gt diese Arbeit dazu bei die grundlegenden Mechanismen zu verstehen, die die Zusammensetzung einer Lebensgemeinschaft bestimmen. Im Einzelnen untersuchte ich hierzu folgende Fragestellungen: Aus welchen Arten bestehen die Anurengemeinschaften des westmadagassischen Trockenwaldes, und wie lassen sich diese Arten morphologisch voneinander abgrenzen? Welche Unterschiede finden sich zwischen den Arten bez{\"u}glich ihres Paarungssystems, ihrer life-history und ihrer Habitatwahl bzw. den Anpassungen an ihr Habitat? Gibt es spezifische Kaulquappengemeinschaften, die sich anhand biotischer und abiotischer Umweltvariablen vorhersagen lassen? Unterscheiden sich die Muster der Vorhersagbarkeit von Gemeinschaften zwischen unterschiedlichen Habitattypen innerhalb eines lokalen r{\"a}umlichen Skalenniveaus? Wie beeinflusst das Vorkommen von Raubfeinden die Verteilung von Kaulquappen und deren Verhalten auf der r{\"a}umlichen Skalenebene einzelner Laichgew{\"a}sser? Anhand welcher Umweltvariablen l{\"a}sst sich die Laichplatzwahl von Anuren in diesem Habitat vorhersagen? Wie lassen sich die Ergebnisse nutzen, um Empfehlungen zum Schutz bedrohter Arten auszusprechen? In dieser Arbeit beschreibe ich eine Froschart wissenschaftlich neu. Diese Art, Scaphiophryne menabensis, ist die seltenste Froschart in ihrem Verbreitungsgebiet, und aus meiner Arbeit resultiert die dringende Empfehlung, sie in ein bestehendes Schutzkonzept f{\"u}r den Kirindy-Wald und seine Umgebung mit einzubeziehen. Weiterhin beschreibe ich wissenschaftlich erstmalig in dieser Arbeit f{\"u}nf Kaulquappenarten und pr{\"a}sentiere Daten zu {\"O}kologie, life-history und Verhalten dieser Arten. Die wissenschaftliche Beschreibung weiterer Frosch- und Kaulquappenarten ist Gegenstand noch andauernder Studien (Scaphiophryne sp., Heterixalus carbonei und H. tricolor; Revision der Kaulquappen von Scaphiophryne). Die Ergebnisse dieser Arbeit stellen damit die Basis f{\"u}r alle weiteren {\"o}kologischen Studien an Fr{\"o}schen und Kaulquappen dieses {\"O}kosystems dar. FAZIT Die Amphibienfauna Madagaskars ist einzigartig, und sie stellt ein aufregendes Feld f{\"u}r {\"o}kologische Fragestellungen dar, sowohl als eigenst{\"a}ndiges System betrachtet als auch als Modell f{\"u}r andere Systeme. Umso mehr verwundert es, dass bislang kaum detaillierte {\"o}kologische Studien an diesem System durchgef{\"u}hrt wurden. Die vorliegende Arbeit schafft zun{\"a}chst mit der taxonomischen Beschreibung der vorkommenden Arten die Basis f{\"u}r {\"o}kologische Fragestellungen und zeigt dann auf den Ebenen sowohl der Gemeinschaft als auch einzelner Arten, wie verschiedene Umweltfaktoren die Verteilung von Anuren in Raum und Zeit beeinflussen. Es zeigt sich, dass sowohl statische Eigenschaften der Gew{\"a}sser als auch dynamische Faktoren wie Raubfeinde oder das Vorhandensein anderer Kaulquappen die Verteilung der Arten auf verschiedenen r{\"a}umlichen Skalenebenen sowie deren Verhalten beeinflussen. Somit tragen die Ergebnisse dieser Arbeit dazu bei, die grundlegenden Mechanismen zu verstehen, die die Zusammensetzung der Lebensgemeinschaften in diesem {\"O}kosystem bestimmen. Nicht zuletzt erm{\"o}glichen diese Erkenntnisse, geeignete, artenorientierte Schutzkonzepte f{\"u}r diese in ihrer Existenz stark bedrohte Anurengemeinschaft zu entwickeln und die Effekte von Habitatzerst{\"o}rung auf diese Gemeinschaft aufzuzeigen.},
  subject      = {Lurche},
  language  = {en}
}
@phdthesis{Thum2006,
  author    = {Thum, Andreas Stephan},
  title     = {Sugar reward learning in Drosophila : neuronal circuits in Drosophila associative olfactory learning},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-17930},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2006},
  abstract  = {Genetic intervention in the fly Drosophila melanogaster has provided strong evidence that the mushroom bodies of the insect brain act as the seat of memory traces for aversive and appetitive olfactory learning (reviewed in Heisenberg, 2003). In flies, electroshock is mainly used as negative reinforcer. Unfortunately this fact complicates a comparative consideration with other inscets as most studies use sugar as positive reinforcer. For example, several lines of evidence from honeybee and moth have suggested another site, the antennal lobe, to house neuronal plasticity underlying appetitive olfactory memory (reviewed in Menzel, 2001; Daly et al., 2004). Because of this I focused my work mainly on appetitive olfactory learning. In the first part of my thesis, I used a novel genetic tool, the TARGET system (McGuire et al., 2003), which allows the temporally controlled expression of a given effector gene in a defined set of cells. Comparing effector genes which either block neurotransmission or ablate cells showed important differences, revealing that selection of the appropriate effector gene is critical for evaluating the function of neural circuits. In the second part, a new engram of olfactory memory in the Drosophila projection neurons is described by restoring Rutabaga adenlylate cyclase (rut-AC) activity specifically in these cells. Expression of wild-type rutabaga in the projection neurons fully rescued the defect in sugar reward memory, but not in aversive electric shock memory. No difference was found in the stability of the appetitive memories rescued either in projection neurons or Kenyon cells. In the third part of the thesis I tried to understand how the reinforcing signals for sugar reward are internally represented. In the bee Hammer (1993) described a single octopaminergic neuron - called VUMmx1 - that mediates the sugar stimulus in associative olfactory reward learning. Analysis of single VUM neurons in the fly (Selcho, 2006) identified a neuron with a similar morphology as the VUMmx1 neuron. As there is a mutant in Drosophila lacking the last enzymatic step in octopamine synthesis (Monastirioti et al., 1996), Tyramine beta Hydroxylase, I was able to show that local Tyramine beta Hydroxylase expression successfully rescued sugar reward learning. This allows to conclude that about 250 cells including the VUM cluster are sufficient for mediating the sugar reinforcement signal in the fly. The description of a VUMmx1 similar neuron and the involvement of the VUM cluster in mediating the octopaminergic sugar stimulus are the first steps in establishing a neuronal map for US processing in Drosophila. Based on this work several experiments are contrivable to reach this ultimate goal in the fly. Taken together, the described similiarities between Drosophila and honeybee regarding the memory organisation in MBs and PNs and the proposed internal representation of the sugar reward suggest an evolutionarily conserved mechanism for appetitive olfactory learning in insects.},
  subject      = {Taufliege},
  language  = {en}
}
@phdthesis{Bach2006,
  author    = {Bach, Peter},
  title     = {Growth and characterization of NiMnSb-based heterostructures},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-17771},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2006},
  abstract  = {In this work heterostructures based on the half-Heusler alloy NiMnSb have been fabricated and characterized. NiMnSb is a member of the half-metallic ferromagnets, which exhibit an electron spin-polarization of 100\% at the Fermi-level. For fabrication of these structures InP substrates with surface orientations of (001),(111)A and (111)B have been used. The small lattice mismatch of NiMnSb to InP allows for pseudomorphic layers, the (111) orientation additionally makes the formation of a half-metallic interface possible. For the growth on InP(001), procedures for the substrate preparation, growth of the lattice matched (In,Ga)As buffer layer and of the NiMnSb layer have been developed. The effect of flux-ratios and substrate temperatures on the MBE growth of the buffer as well as of the NiMnSb layer have been investigated and the optimum conditions have been pointed out. NiMnSb grows in the layer-by-layer Frank-van der Merwe growth mode, which can be seen by the intensity oscillations of the RHEED specular spot during growth. RHEED and LEED measurements show a flat surface and a well-defined surface reconstruction. High resolution x-ray measurements support this statement, additionally they show a high crystalline quality. Measurements of the lateral and the vertical lattice constant of NiMnSb films on (001) oriented substrates show that layers above a thickness of 20nm exhibit a pseudomorphic as well as a relaxed part in the same layer. Whereas layers around 40nm show partly relaxed partitions, these partitions are totally relaxed for layers above 100nm. However, even these layers still have a pseudomorphic part. Depth-dependent x-ray diffraction experiments prove that the relaxed part of the samples is always on top of the pseudomorphic part. The formation and propagation of defects in these layers has been investigated by TEM. The defects nucleate early during growth and spread until they form a defect network at a thickness of about 40nm. These defects are not typical misfit dislocations but rather antiphase boundaries which evolve in the Mn/Sb sublattice of the NiMnSb system. Dependent on the thickness of the NiMnSb films different magnetic anisotropies can be found. For layers up to 15nm and above 25nm a clear uniaxial anisotropy can be determined, while the layers with thicknesses in between show a fourfold anisotropy. Notably the easy axis for the thin layers is perpendicular to the easy axis observed for the thick layers. Thin NiMnSb layers show a very good magnetic homogeneity, as can be seen by the very small FMR linewidth of 20Oe at 24GHz. However, the increase of the linewidth with increasing thickness shows that the extrinsic damping gets larger for thicker samples which is a clear indication for magnetic inhomogeneities introduced by crystalline defects. Also, the magnetic moment of thick NiMnSb is reduced compared to the theoretically expected value. If a antiferromagnetic material is deposited on top of the NiMnSb, a clear exchange biasing of the NiMnSb layer can be observed. In a further step the epitaxial layers of the semiconductor ZnTe have been grown on these NiMnSb layers, which enables the fabrication of NiMnSb/ZnTe/NiMnSb TMR structures. These heterostructures are single crystalline and exhibit a low surface and interface roughness as measured by x-ray reflectivity. Magnetic measurements of the hysteresis curves prove that both NiMnSb layers in these heterostructures can switch separately, which is a necessary requirement for TMR applications. If a NiMn antiferromagnet is deposited on top of this structure, the upper NiMnSb layer is exchange biased by the antiferromagnet, while the lower one is left unaffected. Furthermore the growth of NiMnSb on (111) oriented substrates has been investigated. For these experiments, InP substrates with a surface orientation of (111)A and (111)B were used, which were miscut by 1 to 2° from the exact orientation to allow for smoother surfaces during growth. Both the (In, Ga)As buffer as well as the NiMnSb layer show well defined surface reconstructions during growth. X-ray diffraction experiments prove the single crystalline structure of the samples. However, neither for the growth on (111)A nor on (111)B a perfectly smooth surface could be obtained during growth, which can be attributed to the formation of pyramid-like facets evolving as a result of the atomic configuration at the surface. A similar relaxation behavior as NiMnSb layers on (001) oriented InP could not be observed. RHEED and x-ray diffraction measurements show that above a thickness of about 10nm the NiMnSb layer begins to relax, but remnants of pseudomorphic parts could not be found. Magnetic measurements show that the misorientation of the substrate crystal has a strong influence on the magnetic anisotropies of NiMnSb(111) samples. In all cases a uniaxial anisotropy could be observed. The easy axis is always aligned parallel to the direction of the miscut of the substrate.},
  subject      = {Nickelverbindungen},
  language  = {en}
}
@phdthesis{Betz2005,
  author    = {Betz, Christian},
  title     = {Scalable authoring of diagnostic case based training systems},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-17885},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2005},
  abstract  = {Diagnostic Case Based Training Systems (D-CBT) provide learners with a means to learn and exercise knowledge in a realistic context. In medical education, D-CBT Systems present virtual patients to the learners who are asked to examine, diagnose and state therapies for these patients. Due a number of conflicting and changing requirements, e.g. time for learning, authoring effort, several systems were developed so far. These systems range from simple, easy-to-use presentation systems to highly complex knowledge based systems supporting explorative learning. This thesis presents an approach and tools to create D-CBT systems from existing sources (documents, e.g. dismissal records) using existing tools (word processors): Authors annotate and extend the documents to model the knowledge. A scalable knowledge representation is able to capture the content on multiple levels, from simple to highly structured knowledge. Thus, authoring of D-CBT systems requires less prerequisites and pre-knowledge and is faster than approaches using specialized authoring environments. Also, authors can iteratively add and structure more knowledge to adapt training cases to their learners needs. The theses also discusses the application of the same approach to other domains, especially to knowledge acquisition for the Semantic Web.},
  subject      = {Computerunterst{\"u}tztes Lernen},
  language  = {en}
}
@phdthesis{Mueller2005,
  author    = {M{\"u}ller, Claudia Maria},
  title     = {Studies on the Role of Histone-like Proteins in Gene Regulation in Uropathogenic Escherichia coli Isolate 536},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-17617},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2005},
  abstract  = {In this study, the role of histone-like proteins in gene regulation in uropathogenic Escherichia coli isolate 536 was monitored. The histone-like nucleoid structuring protein H-NS is a global regulator in Escherichia coli that has been intensively studied in non-pathogenic strains. No comprehensive study on the role of H-NS and it's homolog StpA on gene expression in a pathogenic E. coli strain has been carried out so far. Moreover, we identified a third, so far uncharacterized member of the H-NS-like protein family in uropathogenic E. coli isolate 536, which was designated Hlp (H-NS-like protein). Hlp is a 134-amino acid protein, which shares 58 \% sequence identity with H-NS. The gene coding for the Hlp protein, hlp, is found in several uropathogenic E. coli variants, but not in non-pathogenic E. coli K-12. In UPEC strains 536 and CFT073, Hlp is encoded on a possibly horizontally acquired 23-kb genomic region inserted into the serU locus. Studies on hlp transcription revealed, that the gene is transcribed monocistronically from a single promoter and that expression is repressed by H-NS. Purified Hlp protein was binding to its own and to the hns promoter, thereby mediating negative auto- and crossregulation. Furthermore, Hlp and H-NS were directly interacting, resulting in the formation of stable heteromers. Complementation studies with hns mutant strains in a K-12 background revealed that the Hlp protein had in vivo activity, being able to complement the lack of H-NS in terms of motility, growth, and repression of the proU, bgl, and clyA genes. When analyzing the role of the histone-like proteins in expression of virulence-associated genes by using DNA arrays and classical phenotypic assays, most of the observed effects were mediated by the H-NS protein alone. Expression profiling revealed that transcript level of more than 500 genes was affected by an hns mutation, resulting in increased expression of alpha-hemolysin, fimbriae and iron-uptake systems, as well as genes involved in stress adaptation. Furthermore, several other putative virulence factors were found to be part of the H-NS regulon. On the other hand, no effect of StpA alone was observed. An hns stpA double mutant, however, exhibited a distinct gene expression pattern that differed in great parts from that of the hns single mutant. This suggests a direct interaction between the two homologs and the existence of distinct regulons of H-NS and an H-NS/StpA heteromeric complex. Although the H-NS protein has - either as homomer or in complex with StpA - a marked impact on gene expression in pathogenic E. coli strains, its effect on urovirulence is ambiguous. At a high infection dose, hns mutants accelerate lethality in murine UTI and sepsis models relative to the wild type, probably due to increased production of alpha-hemolysin. At lower infectious dose, however, mutants lacking H-NS are attenuated through their impaired growth rate, which can only partially be compensated by the higher expression of numerous virulence factors. As seen with StpA, an hlp single mutant did not exhibit a notable phenotype under standard growth conditions. A severe growth defect of hns hlp double mutants at low temperatures, however, suggests a biological relevance of H-NS/Hlp heteromers under certain circumstances. Furthermore, these mutants expressed more capsular polysaccharide and curli fimbriae, thereby indicating a distinct role of H-NS and Hlp in regulation of these surface structures. The H-NS paralogs Hlp and StpA also modulated H-NS-mediated regulation of fimbrial adhesins, and are oppositely required for normal growth at low or high temperatures, respectively. Finally, expression levels of the three histone-like proteins H-NS, StpA and Hlp itself varied with different temperatures, thereby suggesting a flexible composition of the nucleoid-associated protein pool. Hence, we propose that the biological role of Hlp and StpA does not rely on a distinct function of the single protein, but rather on their interaction with the global regulator H-NS.},
  subject      = {Escherichia coli},
  language  = {en}
}
@phdthesis{Wu2006,
  author    = {Wu, Rongxue},
  title     = {Integrins and SPARC : potential implications for cardiac remodeling},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-17531},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2006},
  abstract  = {Der enorme Umbau des Herzgewebes, wie man ihn nach Druck{\"u}berlastung des Ventrikels oder MyokardInfarkt beobachten kann, gilt als eine der kausalen Ursachen des Herzversagens. Die Ver{\"a}nderungen in der Architektur des Herzens beeinflussen die mechanischen Eigenschaften des Herzmuskels, begr{\"u}ndet sind sie jedoch in Anpassungsprozessen auf der zellul{\"a}ren Ebene vor allem in einer Modulation der Expression bestimmter Gene. Gemeinsam mit Integrinen, den Transmembran-Rezeptoren, welche die extrazellul{\"a}re Umgebung mit dem intrazellul{\"a}ren Zytoskelett verbinden, geh{\"o}ren Proteine der extrazellul{\"a}ren Matrix (ECM) und matrizellul{\"a}re Proteine zu den Schl{\"u}sselkomponenten, die den Umbauprozess im Herzen steuern. Aus diesen Gr{\"u}nden hatte diese Doktorarbeit zum Ziel, die Rolle der Integrine f{\"u}r die Regulation der Genexpression und die Leistungsf{\"a}higkeit des Herzmuskels w{\"a}hrend der durch Druck{\"u}berlastung oder myokardialen Infarkt (MI) hervorgerufenen Wundheilungsprozesse zu analysieren. Um die Beteiligung von Integrin Beta 1 zu untersuchen, wurde ein experimentelles Modell der Druck{\"u}berlastung im Mausherzen (aortic banding; Konstriktion der Aorta; AB) eingesetzt, wobei M{\"a}use mit einer konditionalen, Herz-spezifischen Deletion des Integrin Beta 1 Gens untersucht wurden. Ein besonderes Augenmerk wurde dabei auf die physiologischen Unterschiede und eine ver{\"a}nderte Genexpression im gestressten Herzen in An- oder Abwesenheit von Integrin Beta 1 gelegt. Interessanterweise wurden die M{\"a}use, welche eine Kombination aus Integrin knock-out Allel und dem Kardiomyozyten-spezifischen konditionalen knock-out Allel von Integrin Beta 1 aufwiesen im normalen Mendelschen Verh{\"a}ltnis geboren und wuchsen normal auf. Obwohl diese Tiere immer noch geringe Mengen von Integrin Beta 1 in ihrem Herzen aufwiesen (exprimiert von nicht-Myozyten), besaßen diese M{\"a}use eine ver{\"a}nderte Herzfunktion und waren sehr sensitiv gegen{\"u}ber AB. Im Gegensatz zu der kompensatorischen hypertrophischen Reaktion, die in Wildtyp M{\"a}usen zu beobachten war, zeigte sich in den Integrin Beta 1-defizienten Mausherzen kein Gewebeumbau. Auch die erh{\"o}hte Expression von verschiedenen ECM Proteinen, insbesondere die verst{\"a}rkte Expression des matrizellul{\"a}ren Proteins SPARC, unterblieb nach AB in den Integrin Beta 1-defizienten Tieren. Interessanterweise konnte auch eine transiente Erh{\"o}hung der SPARC mRNA w{\"a}hrend der Umbauprozesse im Herzen in Folge von myokardialem Infarkt (MI) mittels cDNA Makroarrays festgestellt werden. In der Tat fanden sich gr{\"o}ßere Mengen von SPARC bereits 2 Tage (~2,5-fach erh{\"o}ht), 7 Tage (~4-fach erh{\"o}ht) und 1 Monat (~2-fach erh{\"o}ht) nach MI, w{\"a}hrend ein spezifischer Inhibitor der Integrin alpha v Untereinheit diese Hochregulation von SPARC in vivo verhinderte. Immunfluoreszenz Untersuchungen von Herzgewebe verdeutlichten, dass sich die erh{\"o}hte Expression von SPARC auf das Infarktareal beschr{\"a}nkte, dass die Expression von SPARC nach einer anf{\"a}nglichen Erh{\"o}hung im Verlauf von 1 Monaten wieder auf das Anfangsniveau zur{\"u}ckging und dass die verst{\"a}rkte Expression von der Einwanderung von Fibroblasten in das isch{\"a}mische Herzgewebe begleitet war. In vitro stimulierten die Wachstumsfaktoren TGF-Beta 1 und PDGF-BB die Expression von SPARC durch Fibroblasten. Wie sich an Hand von ELISA und Western Blot Untersuchungen feststellen ließ, war die Inhibition von Integrin Beta v nicht in der Lage, die durch TGF-Beta 1 oder PDGF induzierte Sekretion von SPARC zu beeinflussen. Jedoch zeigte sich, dass Vitronektin, ein Ligand von Integrin alpha v, sowohl die Sekretion von TGF-Beta 1 als auch von PDGF-BB durch Kardiomyozyten induzierte und diese Reaktion wurde durch den Integrin alpha v Inhibitor komplett unterdr{\"u}ckt. In funktioneller Hinsicht wirkte SPARC auf die durch ECM Proteine induzierte Migration von Fibroblasten ein, so dass man davon ausgehen kann, dass die lokale Freisetzung von SPARC nach myokardialem Infarkt zur Wundheilung im Herzen beitr{\"a}gt. Zusammenfassend l{\"a}ßt die Kombination der in vivo und in vitro erhobenen experimentellen Daten den Schluss zu, dass mehrere Integrin Untereinheiten eine entscheidende Rolle w{\"a}hrend der Gewebeumbildung im Herzen spielen. Integrin-abh{\"a}ngige Genexpressionsereignisse wie beispielsweise die erh{\"o}hte Expression von SPARC nach MI sind entscheidend an der Koordination der Wundheilung beteiligt. Diese Prozesse scheinen auf einer komplexen Wechselwirkung und Kommunikation zwischen verschiedenen Zelltypen wie Kardiomyozyten und Fibroblasten zu beruhen, um lokal begrenzt eine Heilung und Vernarbung des verletzten Gewebes zu regulieren. Die Aufkl{\"a}rung des fein abgestimmten Wechselspiels zwischen Integrinen matrizellul{\"a}ren Proteinen wie SPARC und Wachstumsfaktoren wird sicherlich zu einem besseren und klinisch nutzbarem Verst{\"a}ndnis der molekularen Mechanismen des Gewebeumbaus im Herzen beitragen.},
  subject      = {Integrine},
  language  = {en}
}
@phdthesis{Varadarajulu2006,
  author    = {Varadarajulu, Jeeva},
  title     = {Integrin alpha(v) and Focal adhesion kinase - promising targets to limit smooth muscle cell migration},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-17484},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2006},
  abstract  = {Die Pr{\"a}vention einer Restenose nach PTCA ist eines der wichtigsten Ziele f{\"u}r Forscher und Kliniker. Etwa 1,5 Millionen Interventionen werden weltweit j{\"a}hrlich durchgef{\"u}hrt und mit Hilfe von Stentimplantationen k{\"o}nnen die meisten Patienten erfolgreich behandelt werden. Jedoch kommt es in bis zu 60 \% der F{\"a}lle zu einer Restenosierung des behandelten Gef{\"a}sses innerhalb von etwa 6 Monaten. F{\"u}r die Entwicklung der Neointima, Hauptursache der Restenose, sind Wanderung glatter Gef{\"a}ssmuskelzellen (GMZ) und Ablagerungen von Proteinen der extrazellul{\"a}ren Matrix (EZM) verantwortlich. Signalkaskaden, die {\"u}ber Integrin Rezeptoren vermittelt werden, spielen in der Migration von GMZ eine zentrale Rolle. Viele Integrine binden {\"u}ber eine spezifische Aminos{\"a}uresequenz, die sogenannte RGD Sequenz, die in verschiedenen EZM Proteinen und in auf Zelloberfl{\"a}chen gebundenen Immunglobulinen vorkommt. Bisher konnte von verschiedenen Integrinantagonisten, wie Antik{\"o}rpern, zyklischen Peptiden, Peptidomimetika und Nicht-Peptiden, gezeigt werden, dass die die pathologische Reaktion vermindern k{\"o}nnen, was auf die Bedeutung der Integrin vermittelten Signalkaskaden in der GMZ Migration hinweist. Wir konnten zeigen, dass die Wanderung von GMZ sowohl mit einem pharmakologischen Inhibitor, wie auch durch die endogene {\"U}berexpression eines FAK Inhibitors, der {\"u}ber ein AAV Vektorsystem {\"u}bertragen wurde, gehemmt werden konnte. So stellt die Blockade der Integrin vermittelten Signalkaskaden ein vielversprechendes Ziel f{\"u}r die Inhibition der Restenose nach PTCA dar. Im ersten Teil der Arbeit konnten wir nach Stimulation von humanen GMZ mit Vitronektin (VN) eine verst{\"a}rkte Tyrosinphosphorylierung (PTyr) verschiedener zellul{\"a}rer Proteine nachweisen. Dabei zeigte sich eine besonders signifikante Phosphorylierung eines Proteins, das mittels Immunpr{\"a}zipitation als "focal adhesion kinase" (FAK) identifiziert wurde. Die erh{\"o}hte PTyr zeigte sich auch am Tyrosinrest FAK Tyr-397, der Autophosphorylierungsstelle der Kinase. Die erh{\"o}hte PTyr von FAK war abh{\"a}ngig von der Stimulation durch VN und nicht zu beobachten, wenn die GMZ auf Poly-L-Lysin ohne spezifische Rezeptor Ligand Interaktion adh{\"a}rierten. Mit Hilfe eines Integrin \&\#61537;V Inhibitors konnte diese rezeptorvermittelte Aktivierung in einer dosisabh{\"a}ngigen Weise verhindert werden. Die Inhibition der durch VN stimulierten Migration (Haptotaxis) mit Hilfe des \&\#61537;V Inhibitors korrelierte mit der Reduktion der Aktivierung Integrin vermittelter Signalwege, im Besonderen der PTyr von FAK. Interessanterweise konnte die Blockade von Integrin \&\#61537;V nicht nur die durch VN stimulierte Haptotaxis, sondern auch die durch Wachstumsfaktoren induzierte Chemotaxis hemmen. Die Migrationsrate wurde mit Hilfe eines modifizierten Boyden-Migrationskammer Experiments ermittelt, das ein in vitro Modell zur Untersuchung von Zellwanderung darstellt. Der \&\#61537;V Inhibitor hemmte auch die Invasion der GMZ in eine Matrigel Matrix und die Sekretion der Matrixmetalloproteinase 2. Eine Apoptose wurde bei den verwendeten Konzentrationen nicht induziert. FAK stellt ein wichtiges Schl{\"u}sselprotein in vielen zellul{\"a}ren Mechanismen dar. So konnte die Beteiligung von FAK in der Regulation der Zellmigration an verschiedenen Zellarten gezeigt werden. Die {\"U}berexpression von FRNK, der C-terminalen Dom{\"a}ne von FAK, ist in der Lage die in vitro Migration von GMZ wie auch die Neointimabildung in einem Schweinemodell zur Entwicklung der Restenose zu verhindern. FAK stellt somit ein vielversprechendes Ziel f{\"u}r die Inhibition der Restenoseentwicklung nach PTCA dar. Der letzte Teil der Arbeit konzentrierte sich auf die Identifikation von Bindungspartnern der N-terminalen Dom{\"a}ne von FAK mit Hilfe eines bakteriellen „two hybrid" Systems. Es wurde als ein m{\"o}glicher Bindungspartner ein 17,9 kDa grosses Protein gefunden. Das humane Homolog ist als AGS4 bezeichnet und stellt einen GTPase Aktivator dar. Es zeigte sich, dass es in der Lage ist, mit der N-terminalen Dom{\"a}ne von FAK zu interagieren, und dass es stark in h{\"a}matopoetischen Zellen exprimiert wird. Zusammenfassend kann man sagen, dass unsere Ergebnisse FAK als ein vielversprechendes Ziel f{\"u}r die Inhibition der GMZ Migration erscheinen lassen. Das Vorliegen verschiedener induzierter Signalwege kann durch die Rolle der EZM Proteine und der Wachstumsfaktoren in der Zellmigration erkl{\"a}rt werden. Das Ziel dieser Studie war die Signalkaskaden, die zu einer GMZ Migration und somit zu einer Restenose f{\"u}hren, zu unterbrechen. Die Ergebnisse zeigen, dass \&\#61537;V Integrine und Signalkaskaden, die FAK vermittelt sind, wichtig f{\"u}r die Zellmigration sind. Die Unterbrechung dieser FAK vermittelten Signalwege, sei es durch einen pharmakologischen Inhibitor oder durch die {\"U}berexpression von FRNK f{\"u}hrte zu einer Inhibition der Migration.},
  subject      = {Restenose},
  language  = {en}
}
@phdthesis{Wang2006,
  author    = {Wang, Dapeng},
  title     = {The mechanism of glucocorticoid induced murine thymocyte and peripheral T cell apoptosis},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-17317},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2006},
  abstract  = {Glucocordicoide sind kleine lipophile Verbindungen, die viele biologische Effekte verursachen, wenn sie an den intrazellul{\"a}ren Glukokortikoidrezeptor (GR) binden. Dieser wandert wiederum in den Nucleus, um dort direkt oder indirekt die Transkription der Gene zu regulieren. Glukokortikoide sind der Grundstein in der Behandlung f{\"u}r eine Anzahl von h{\"a}matologischen b{\"o}sartigen Erkrankungen, wie Leuk{\"a}mie, Lymphome und Myelome. In der Literatur wird beschrieben, dass Glukokortikoide {\"u}ber die Vermittlung von Apoptose wirken.die Wirkung. Trotz der enormen Fortschritte im Verst{\"a}ndnis des regulierten Zelltodes, ist der genaue Mechanismus, den Glukokortikoide bei der Apoptose vermitteln, unbekannt. Die Daten, die bis jetzt erzielt wurden, deuten stark darauf hin, dass Gentransaktivierung durch den GR f{\"u}r den Beginn der durch Glukokortikoide verursachten Thymozytenapoptose verantwortlich ist. Außerdem wurde gezeigt, dass das multikatalytische Proteasom, einige Mitglieder der BCL2-Familie, {\"A}nderungen im Kalziumfluss sowie Caspasen eine wichtige Rolle in der Durchf{\"u}hrungsphase des durch Glukokortikoide vermittelten Zelltodes spielen Jedoch ist die genaue Reihenfolge dieses Prozesses bisher nicht bekannt. Ein Hauptschwierigkeit der gegenw{\"a}rtigen Diskussion entsteht aus der Tatsache, dass unterschiedliche Zellarten, wie Thymozyten, reife T-Zellen und Lymphomzellen verglichen werden, ohne ihre unterschiedlichen Eigenschaften und Genexpressionsprofile zu beachten. Obwohl angenommen wird, dass Glukokortikoide Apoptose {\"u}ber einen konservierten Mechanismus, wird dies nicht durch irgendwelche Daten unterst{\"u}tzt. In anderen Worten, es ist m{\"o}glich, dass Apoptose in Thymozyten, reifen T-Zellen und Lymphomzellen {\"u}ber unterschiedliche Signalwege vermittelt wid. Wir fragten uns daher, ob ein einzelner durch Glukokoritkoide eingeleiteter Signaltransduktionsweg daf{\"u}r verantwortlich ist, dass Apoptose in allen T-Lamphozytenarten eingeleitet wird, oder ob noch andere Signalwege existieren. Daher verglichen wir die Rolle des Proteasomes, verschiedener Caspasen, des lysosomalen Kompartements und anderer Faktoren in der durch Glukokortikoide induzierten Apoptose in Mausthymozyten und pepripheren T-Zellen sowie T-ALL Lymphomzellen. Unsere Entdeckungen zeigen, dass die Anfangsphase der durch Glukokortikoide induzierten Apoptose unabh{\"a}ngig von der Differenzierungsstadien der Zelle ist. Apoptose wird sowohl in Thymozyten als auch in reifen T-Zellen durch den GR vermittelt und ist von der Gentranskription abh{\"a}ngig. Im Gegensatz dazu unterscheidet sich die Durchf{\"u}hrungsphase erheblich in ihren Anforderungen f{\"u}r eine Anzahl von Signaltransduktionskomponenten zwischen Thymozyten und peripheren T-Zellen. W{\"a}hrend in Thymozyten das Proteasom, die Caspasen 3, 8 und 9 sowie Cathepsin B eine wichtige Rolle in durch Glukokortikoide induzierten Zelltod spielen, sind diese Faktoren f{\"u}r die Induktion des Zell-Todes in peripheren T- Zellen entbehrlich. Im Gegensatz dazu scheinen {\"A}nderungen in der Expression und intrazellul{\"a}ren Lokalisation von Mitgliedern der Bcl-2 Familie nicht zum durch Glukokortikoide induzierten Zellltod beitzutragen, egal um welchen Zelltyp es sich handelt. Wir haben beobachtet, dass eine Behandlung von Thymozyten mit Glukokortikoiden zu einer Aktivierung der lysosomalen Protease Cathepsin B f{\"u}hrt. Dies ist ein essentieller Schritt zur Einleitung von Apoptose durch Glukortikoide und zeigt zum ersten Mal, dass der lysosomale Amplifikationsloop in diesen Prozess involviert ist. Die Analyse des durch Glukokortikoide induzierten Zelltodes in verschiedenen T-ALL Zelllinien deutet darauf hin, dass die durch Glukokortikoide induzierten Signalwege in Thymozyten und allen Lymphonzelllinien aber nicht in peripheren T Zellen {\"u}bereinstimmen. Da die hoch-dosierte Glukokortikoidbehandlung eine wichtige Rolle in der Behandlung von hematologischen b{\"o}sartigen Erkrankungen spielt, k{\"o}nnen unsere Beobachtungen eine Grundlage f{\"u}r eine neue Anti-Krebs-Stragie bilden, die darauf ausgelegt ist, spezifisch Tumorzellen zu eliminieren aber reife T-Zellen unber{\"u}hrt lassen.},
  subject      = {T-Lymphozyt},
  language  = {en}
}
@phdthesis{Groh2005,
  author    = {Groh, Claudia},
  title     = {Environmental influences on the development of the female honeybee brain Apis mellifera},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-17388},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2005},
  abstract  = {F{\"u}r die Honigbiene spielt der Geruchssinn eine entscheidende Rolle bei der Kommunikation innerhalb des Sozialstaates. Kastenspezifische, auf uweltbedingten Einfl{\"u}ssen basierende sowie altersbedingte Unterschiede im olfaktorisch gesteuerten Verhalten liefern ein hervorragendes Modellsystem f{\"u}r diese Studie, um die Entwicklung und Funktion neuronaler Plastizit{\"a}t im olfaktorischen System zu untersuchen. Diese Studie konzentriert sich auf Unterschiede zwischen K{\"o}niginnen und Arbeiterinnen, den beiden weiblichen Kasten innerhalb des Bienestaates, sowie auf umweltbedingte Plastizit{\"a}t. Diploide Eier, aus denen sich K{\"o}niginnen und Arbeiterinnen entwickeln, sind genetisch identisch. Dennoch entwickeln sich K{\"o}niginnen wesentlich schneller zum Adulttier als Arbeiterinnen, sind als Imago gr{\"o}ßer, leben wesentlich l{\"a}nger und zeigen andere Verhaltensweisen. Diese Unterschiede werden durch eine differentielle larvale F{\"u}tterung initiiert. Im Anschluss an das Larvenstadium und somit nach erfolgter Kastendetermination, entwickeln sich die Bienen {\"u}ber eine Puppenphase (verdeckelte Phase) zum Imago. Adulte Bienen klimatisieren das zentrale Brutareal auf einer mittleren Temperatur von 35°C konstant. Bienen, die bei niedrigeren Temperaturen innerhalb des physiologisch relevanten Bereichs aufwachsen, weisen Defizite im olfaktorischen Lernverhalten und in der Tanzkommunikation auf. M{\"o}gliche neuronale Korrelate f{\"u}r altersbedingte, temperatur- und kastenspezifische Unterschiede im olfaktorisch gesteuerten Verhalten sollten in dieser Arbeit betrachtet werden. Die strukturellen Analysen konzentrierten sich dabei auf prim{\"a}re (Antennalloben) und sekund{\"a}re (Pilzk{\"o}rper-Calyces)olfaktorische Verarbeitungszentren im Gehirn von sich entwickelnden und adulten Tieren beider Kasten. Synchron verdeckelte Brutzellen beider Kasten wurden unter kontrollierten Bedingungen im Inkubator herangezogen. Neuroanatomische Untersuchungen wurden an fixierten Gewebeschnitten mittels einer Doppelfluoreszenzf{\"a}rbung mit Fluor-Phalloidin und anti-Synapsin Immuncytochemie durchgef{\"u}hrt. Diese Doppelmarkierung erm{\"o}glichte die Visualisierung und Quantifizierung individueller Synapsenkomplexe (Microglomeruli) im Pilzk{\"o}rper-Calyx. Phalloidin bindet an verschiedene F-Aktin Isoformen und kann zum Nachweis von F-Aktin im Insektennervensystem verwendet werden. F-Aktin wird w{\"a}hrend der Entwicklung in Wachstumskegeln und in adulten Gehirnen in pr{\"a}synaptischen Endigungen und dendritischen Dornen exprimiert. Pr{\"a}synaptische Elemente wurden durch den Einsatz eines spezifischen Antik{\"o}rpers gegen das Drosophila-Vesikeltransportprotein Synapsin I charakterisiert. Mit Hilfe der konfokalen Laser-Scanning Mikroskopie wurde die exakte r{\"a}umliche Zuordnung der Fluoreszenzsignale anhand optischer Schnitte durch die Pr{\"a}parate realisiert. Anhand dieser Methodik konnten erstmals {\"u}ber reine Volumenanalysen hinausgehende Messungen zur synaptischen Strukturplastizit{\"a}t im Pilzk{\"o}rper-Calyx durchgef{\"u}hrt werden. Die Untersuchungen an Gehirnen in den verschiedenen Puppenstadien zeigten Unterschiede im Entwicklungsverlauf der Gehirne mit dem Fokus auf die Bildung antennaler Glomeruli und calycaler Microglomeruli. Unterschiede in der Gehirnentwicklung verdeutlichten die ontogenetische Plastizit{\"a}t des Gehirns der Honigbiene. Entsprechend der k{\"u}rzeren Puppenphase der K{\"o}niginnen bildeten sich sowohl antennale Glomeruli als auch alle Untereinheiten (Lippe, Collar, Basalring) des Calyx etwa drei Tage fr{\"u}her aus. Direkt nach dem Schlupf zeigten quantitative Analysen innerhalb der Pilzk{\"o}rper-Calyces eine signifikant geringere Anzahl an Microglomeruli bei K{\"o}niginnen. Diese neuronale Strukturplastizit{\"a}t auf verschiedenen Ebenen der olfaktorischen Informationsverarbeitung korreliert mit der kastenspezifischen Arbeitsteilung. Die Arbeit liefert Erkenntnisse {\"u}ber den Einfluss eines wichtigen kontrollierten Umweltparameters, der Bruttemperatur, w{\"a}hrend der Puppenphase auf die synaptische Organisation der adulten Pilzk{\"o}rper-Calyces. Bereits geringe Unterschiede in der Aufzuchtstemperatur (1°C) beeinflussten signifikant die Anzahl von Microglomeruli in der Lippenregion des Calyx beider weiblicher Kasten. Die maximale Anzahl an MG entwickelte sich bei Arbeiterinnen bei 34.5°C, bei K{\"o}niginnen aber bei 33.5°C. Neben dieser entwicklungsbedingten neuronalen Plastizit{\"a}t zeigt diese Studie eine starke altersbedingte Strukturplastizit{\"a}t der MG w{\"a}hrend der relativ langen Lebensdauer von Bienenk{\"o}niginnen. Hervorzuheben ist, dass die Anzahl an MG in der olfaktorischen Lippenregion mit dem Alter anstieg (~55\%), in der angrenzenden visuellen Collarregion jedoch abnahm (~33\%). Die in der vorliegenden Arbeite erstmals gezeigte umweltbedingte Entwicklungsplastizit{\"a}t sowie altersbedingte synaptische Strukturplastizit{\"a}t in den sensorischen Eingangsregionen der Pilzk{\"o}rper-Calyces k{\"o}nnte kasten- und altersspezifischen Anpassungen im Verhalten zugrunde liegen.},
  subject      = {Biene},
  language  = {en}
}
@phdthesis{Thakar2006,
  author    = {Thakar, Juilee},
  title     = {Computational models for the study of responses to infections},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-17266},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2006},
  abstract  = {In diesem Jahrhundert haben neue experimentelle Techniken und Computer-Verfahren enorme Mengen an Information erzeugt, die bereits viele biologische R{\"a}tsel enth{\"u}llt haben. Doch die Komplexit{\"a}t biologischer Systeme wirft immer weitere neue Fragen auf. Um ein System zu verstehen, bestand der Hauptansatz bis jetzt darin, es in Komponenten zu zerlegen, die untersucht werden k{\"o}nnen. Ein neues Paradigma verkn{\"u}pft die einzelnen Informationsteile, um sie auf globaler Ebene verstehen zu k{\"o}nnen. In der vorgelegten Doktorarbeit habe ich deshalb versucht, infekti{\"o}se Krankheiten mit globalen Methoden („Systembiologie") bioinformatisch zu untersuchen. Im ersten Teil wird der Apoptose-Signalweg analysiert. Apoptose (Programmierter Zelltod) wird bei verschiedenen Infektionen, zum Beispiel bei Viruserkrankungen, als Abwehrmaßnahme eingesetzt. Die Interaktionen zwischen Proteinen, die ‚death' Dom{\"a}nen beinhalten, wurden untersucht, um folgende Fragen zu kl{\"a}ren: i) wie wird die Spezifit{\"a}t der Interaktionen erzielt? -sie wird durch Adapter erreicht, ii) wie werden Proliferation/ {\"U}berlebenssignale w{\"a}hrend der Aktivierung der Apoptose eingeleitet? - wir fanden Hinweise f{\"u}r eine entscheidende Rolle des RIP Proteins (Rezeptor-Interagierende Serine/Threonine-Proteinkinase 1). Das Modell erlaubte uns, die Interaktions-Oberfl{\"a}chen von RIP vorherzusagen. Der Signalweg wurde anschließend auf globaler Ebene mit Simulationen f{\"u}r verschiedene Zeitpunkte analysiert, um die Evolution der Aktivatoren und Inhibitoren des Signalwegs und seine Struktur besser zu verstehen. Weiterhin wird die Signalverarbeitung f{\"u}r Apoptosis-Signalwege in der Maus detailliert modelliert, um den Konzentrationsverlauf der Effektor-Kaspasen vorherzusagen. Weitere experimentelle Messungen von Kaspase-3 und die {\"U}berlebenskurven von Zellen best{\"a}tigen das Modell. Der zweite Teil der Resultate konzentriert sich auf das Phagosom, eine Organelle, die eine entscheidende Rolle bei der Eliminierung von Krankheitserregern spielt. Dies wird am Beispiel von M. tuberculosis veranschaulicht. Die Fragestellung wird wiederum in zwei Aspekten behandelt: i) Um die Prozesse, die durch M. tuberculosis inhibiert werden zu verstehen, haben wir uns auf das Phospholipid-Netzwerk konzentriert, das bei der Unterdr{\"u}ckung oder Aktivierung der Aktin-Polymerisation eine große Rolle spielt. Wir haben f{\"u}r diese Netzwerkanalyse eine Simulation f{\"u}r verschiedene Zeitpunkte {\"a}hnlich wie in Teil eins angewandt. ii) Es wird vermutet, dass Aktin-Polymere bei der Fusion des Phagosoms mit dem Lysosom eine Rolle spielen. Um diese Hypothese zu untersuchen, wurde ein in silico Modell von uns entwickelt. Wir fanden heraus, dass in der Anwesenheit von Aktin-Polymeren die Suchzeit f{\"u}r das Lysosom um das F{\"u}nffache reduziert wurde. Weiterhin wurden die Effekte der L{\"a}nge der Aktin-Polymere, die Gr{\"o}ße der Lysosomen sowie der Phagosomen und etliche andere Modellparameter analysiert. Nach der Untersuchung eines Signalwegs und einer Organelle f{\"u}hrte der n{\"a}chste Schritt zur Untersuchung eines komplexen biologischen Systems der Infektabwehr. Dies wurde am Beispiel der Wirt-Pathogen Interaktion bei Bordetella pertussis und Bordetella bronchiseptica dargestellt. Die geringe Menge verf{\"u}gbarer quantitativer Daten war der ausschlaggebende Faktor bei unserer Modellwahl. F{\"u}r die dynamische Simulation wurde ein selbst entwickeltes Bool'sches Modell verwendet. Die Ergebnisse sagen wichtige Faktoren bei der Pathologie von Bordetellen hervor, besonders die Bedeutung der Th1 assoziierten Antworten und dagegen nicht der Th2 assoziierten Antworten f{\"u}r die Eliminierung des Pathogens. Einige der quantitativen Vorhersagen wurden durch Experimente wie die Untersuchung des Verlaufs einer Infektion in verschiedenen Mutanten und Wildtyp-M{\"a}usen {\"u}berpr{\"u}ft. Die begrenzte Verf{\"u}gbarkeit kinetischer Daten war der kritische Faktor bei der Auswahl der computer-gest{\"u}tzten Modelle. Der Erfolg unserer Modelle konnte durch den Vergleich mit experimentellen Beobachtungen belegt werden. Die vergleichenden Modelle in Kapitel 6 und 9 k{\"o}nnen zur Untersuchung neuer Wirt-Pathogen Interaktionen verwendet werden. Beispielsweise f{\"u}hrt in Kapitel 6 die Analyse von Inhibitoren und inhibitorischer Signalwege aus drei Organismen zur Identifikation wichtiger regulatorischer Zentren in komplexen Organismen und in Kapitel 9 erm{\"o}glicht die Identifikation von drei Phasen in B. bronchiseptica und der Inhibition von IFN-\&\#947; durch den Faktor TTSS die Untersuchung {\"a}hnlicher Phasen und die Inhibition von IFN-\&\#947; in B. pertussis. Eine weitere wichtige Bedeutung bekommen diese Modelle durch die m{\"o}gliche Identifikation neuer, essentieller Komponenten in Wirt-Pathogen Interaktionen. In silico Modelle der Effekte von Deletionen zeigen solche Komponenten auf, die anschließend durch experimentelle Mutationen weiter untersucht werden k{\"o}nnen.},
  subject      = {Bordetella pertussis},
  language  = {en}
}
@phdthesis{Duttu2005,
  author    = {Duttu, Vallabhapurapu Subrahmanya},
  title     = {Regulation of B lymphocyte terminal differentiation and death by the transcription factor Blimp-1},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-17158},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2005},
  abstract  = {B lymphocyte induced maturation protein-1 (Blimp-1) und X-box-binding protein-1" (XBP-1) sind als Transkriptionsfaktoren unverzichtbar f{\"u}r die terminale Differenzierung von B-Lymphozyten zu Immunglobulin (Ig)-sezernierenden Plasmazellen. Ebenso stellen die unfolded protein response (UPR) und das Spleißen von XBP-1, beides ausgel{\"o}st durch erh{\"o}hte Ig-Produktion, entscheidende Schritte auf dem Weg zur Plasmazellentstehung dar. Allerdings ist das Molek{\"u}l/ sind die Molek{\"u}le nach wie vor unbekannt, die diesen beiden Ereignissen in der Signalkaskade vorgeschaltet sind. Da die ektope Expression von Blimp-1 in B-Zellen hinreicht, diese zu Plasmazellen zu differenzieren, erscheint es plausibel, dass Blimp-1 das Molek{\"u}l sein k{\"o}nnte, das die Ausl{\"o}sung einer UPR und das Spleißen von XBP-1 steuert. Dieser M{\"o}glichkeit wurde durch ektope Expression von Blimp-1 in der Maus-B-Zell-Lymphomlinie WEHI 231 und in prim{\"a}ren B-Zellen aus der Milz von M{\"a}usen nachgegangen. Die ektope Expression von Blimp-1 f{\"u}hrte in beiden Zelltypen zur Erh{\"o}hung der Ig Produktion, zum Spleißen von XBP-1 und zur Sekretion von Immunglobulinen. Interessanterweise war der N-terminale Anteil von Blimp-1, bestehend aus den Aminos{\"a}uren 1-751, hinreichend, um diese Effekte auszul{\"o}sen, w{\"a}hrend der C-Terminus, der die Aminos{\"a}uren 465-856 umfaßte, keinen Effekt hatte. Dar{\"u}berhinaus, wurde die Expression von BIP, dessen Gen ein UPR-Zielgen ist, durch ektope Expression von Blimp-1 bzw. dessen N-Terminus in prim{\"a}ren B-Zellen erh{\"o}ht. Diese Ergebnisse zeigen deutlich, dass Blimp-1, speziell dessen N-terminale Dom{\"a}ne, hinreichend ist, um eine UPR und die Prozessierung von XBP-1 auszul{\"o}sen, was zur Ig-Sekretion von B-Zellen f{\"u}hrt.},
  subject      = {B-Lymphozyt},
  language  = {en}
}
@phdthesis{Troesken2005,
  author    = {Tr{\"o}sken, Eva-Regina},
  title     = {Toxicological evaluation of azole fungicides in agriculture and food chemistry},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-17016},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2005},
  abstract  = {Azole sind wichtige Chemikalien, die als Fungizide in der Landwirtschaft und der Medizin eingesetzt werden. Auch als Zytostatika in der Humanmedizin finden sie Anwendung. Die fungizide Wirkung beruht auf der Hemmung der Lanosterol-14\&\#945;-Demethylase (CYP51), die die Demethylierung von Lanosterol zum „Follicular Fluid Meiosis Activating Steroid (FF-MAS)" katalysiert. F{\"u}r Pilze ist das sp{\"a}ter resultierende Ergosterol ein essentieller Bestandteil der Zellmembran. Exponierten Pilzen fehlt Ergosterol was zu einem Zusammenbruch der Zellmembran f{\"u}hrt. S{\"a}ugetiere k{\"o}nnen Cholesterol, das sp{\"a}tere Produkt der Lanosterol-14\&\#945;-Demethylierung, das zur Synthese von z.B. Gallens{\"a}uren und Sexualhormonen n{\"o}tig ist, mit der Nahrung aufnehmen. FF-MAS und das resultierende T-MAS (Testis Meiosis Activating Steroids), die direkten Produkte der CYP51 katalysierten Reaktion, wirken als Meiose-aktivierende Steroide auf Ovarien und Hoden und werden nicht mit der Nahrung aufgenommen. Eine Hemmung der CYP51 Aktivit{\"a}t k{\"o}nnte das endokrine System beeinflussen und wird daher als unerw{\"u}nschte Nebenwirkung der Azole betrachtet. Aromatase (CYP19) katalysiert die Demethylierung von Testosteron zu {\"O}stradiol und wird durch Azole gehemmt. Die Verringerung der {\"O}strogenspiegel durch CYP19-Inhibition ist das Wirkprinzip der als Zytostatika genutzten Azole, bei den Fungiziden wird es als unerw{\"u}nschte Nebenwirkung angesehen. Ein ideales Azol sollte Pilz-CYP51 stark inhibieren, aber sowohl humanes CYP19 wie auch humanes CYP51 sollten durch ein solches Azol nicht inhibiert werden. Ein ideales Azol-Zytostatikum sollte eine starke inhibitorische Potenz gegen{\"u}ber humanem CYP19 aufweisen, hingegen sollten humanes und Pilz-CYP51 nicht inhibiert werden. Ziel dieser Arbeit war es nun festzustellen: sind Fungizide und Antimykotika starke Inhibitoren von Pilz-CYP51? Zeigen Fungizide und Antimykotika keine Aktivit{\"a}t gegen{\"u}ber humanem CYP19 und humanem CYP51? Sind Zytostatika starke Inhibitoren von humanem CYP19? Zeigen Zytostatika keine Aktivit{\"a}t gegen{\"u}ber humanem CYP51 und Pilz-CYP51? Die inhibitorische Potenz von 22 Azolen, aus den drei Anwendungsgebieten, wurden an vier Systemen getestet: i) an humanem CYP19 und einem fluoreszierenden Pseudosubstrat, ii) an CYP19 und Testosteron als Substrat, iii) an humanem CYP51 und iv) Candida albicans CYP51 und Lanosterol als Substrat. Die Produktbildung wurde mittels Hochdruckfl{\"u}ssigkeitschromatographie gekoppelter Tandem-Massenspektrometrie nach Photosprayionisation gemessen. Das humane CYP51 wurde von „BD Gentest Cooperation" zur Verf{\"u}gung gestellt. Ein katalytisch aktiver Enzymkomplex bestehend aus der Lanosterol-14\&\#945;-Demethylase von Candida albicans und der Oxidoreduktase von Candida tropicalis, wurde im Baculovirussystem exprimiert. Ein Vergleich der inhibitorischen Wirkst{\"a}rke der Substanzen auf menschliches CYP19 und CYP51 und Pilz-CYP51 zeigt, dass einige Azole das erw{\"u}nschte Bild zeigen. Dazu geh{\"o}ren die beiden Zytostatika Fadrozol und Letrozol, sowie Fluconazol und Itraconazol, zwei Antimykotika aus der Humanmedizin, und einige Fungizide z.B. Cyproconazol und Hexaconazol. Ein unerw{\"u}nschtes Bild zeigen z.B. Prochloraz, Bifonazol, Ketoconazol und Miconazol. Sieben Azole weisen ein gemischtes Bild an inhibitorischen Wirkst{\"a}rken auf. Um einen modellartigen Eindruck der R{\"u}ckst{\"a}nde von Azolen in Lebensmitteln zu erhalten, wurde eine auf LC-ESI-MS/MS basierende R{\"u}ckstandsanalytik f{\"u}r Azole im Wein entwickelt. Alle gefunden R{\"u}ckst{\"a}nde lagen unterhalb der beh{\"o}rdlich festgelegten R{\"u}ckstandsh{\"o}chstmengen. Um die inhibitorische Wirkung der Azole auf die verschiedenen Enzymsysteme in einem gr{\"o}ßeren Zusammenhang zu bringen, wurden die IC50 Werte mit Expositionsdaten von Bauern, maximalen Plasmaspiegeln in Patienten nach der Einnahme von Antimykotika und mit Expositionsgrenzwerten f{\"u}r die Langzeitaufnahme von Pflanzenschutzmittelr{\"u}ckst{\"a}nden („Acceptable Daily Intake Levels", ADI) verglichen. Basierend auf den dargestellten Ergebnissen k{\"o}nnen folgende Schlussfolgerungen gezogen werden. Das Risiko f{\"u}r landwirtschaftliche Arbeiter durch Exposition gegen{\"u}ber Azolfungiziden kann im Bezug auf menschliches CYP19 und CYP51 als vernachl{\"a}ssigbar eingestuft werden, wenn die entsprechenden Sicherheitsvorkehrungen getroffen werden. Im medizinischen Bereich muss grunds{\"a}tzlich der Einsatz von Bifonazol, Miconazol und Ketoconazol mit Blick auf die hohe inhibitorische Potenz gegen{\"u}ber menschlichem CYP19 und 51 kritisch betrachtet werden. Unter der Annahme, dass die ADI Werte eingehalten werden, stellen R{\"u}ckst{\"a}nde auf Lebensmitteln in Bezug auf die genannten Enzymsysteme keine Bedrohung f{\"u}r den Verbraucher da. Die Inhibition von CYP19 muss als St{\"o}rung des Hormonsystems angesehen werden. Die Bedeutung von FF-MAS und T-MAS im endokrinen System muss noch abschließend gekl{\"a}rt werden und damit auch die Frage, wie viel Bedeutung der Inhibition von menschlichem CYP51 beigemessen werden muss.},
  subject      = {Azole},
  language  = {en}
}
@phdthesis{Stahl2005,
  author    = {Stahl, Rainer},
  title     = {Electroactive Conjugated Polymers as Charge-Transport Materials for Optoelectronic Thin-Film Devices},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-16980},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2005},
  abstract  = {In this work the electrochemical and spectroelectrochemical properties of a series of pi-conjugated organic polymers were studied. The polymers were deposited on platinum electrodes or ITO-coated glass substrates by potentiodynamic electro-polymerisation of the corresponding monomeric precursor molecules. The electro-chemical and photophysical properties of the triarylborane monomers were studied in detail in order to estimate possible influences on the behaviour of the corresponding polymer. The first part of this work aimed at the synthesis and investigation of conjugated donor-acceptor polymers which combine the prerequisites of an OLED within one material: the transport of positive and negative charges and the formation of emissive excited states. With the carbazole-substituted oxadiazoles 1-3 it was shown that on the one hand the carbazole functionality is suitable for enabling the electrochemical polymerisation of the monomers and on the other hand it facilitates reversible p-doping of the resultant polymers. Although n-doping of poly-1-poly-3 is possible due to the electron-deficient oxadiazole rings, it causes the continuous degradation of these electron-acceptor units. Interestingly, this process does not influence the capability of p-doping of the polymers. With respect to its electrochemical and spectroelectrochemical properties the behaviour of the borane polymer poly-4 is absolutely identical with that of the oxadiazole polymers. Moreover, the optical excitation of poly-4 in the solid state leads to the emission of blue-green light which suggests that this polymer might also possess electroluminescent properties. AFM-measurements of poly-4 films on ITO-coated glass substrates revealed, that the film thickness can be controlled to a certain extent by the number of polymerisation redox cycles. It was shown from the electrochemical and photophysical properties of the triarylboranes 4-6 that the pi-pi-interaction between boron and nitrogen atoms is comparably weak in these molecules. This leads to an unexpected ground-state polarisation with a partially positive boron atom and a partially negative nitrogen atom. Moreover, it was found that TAB 4 possesses a lower symmetry than D3 in solution and that excitation energy can be transferred amongst the three subchromophores of 4. By titration experiments it was also demonstrated that TAB 4 can reversibly bind fluoride ions and that the binding event significantly influences the optical absorption characteristics of the chromophore. It can be assumed, that the above mentioned properties, which have a profound influence on the photophysical behaviour of these triarylborane chromophores, also determine the behaviour of the corresponding polymer in a solid state environment. The aim of the second part of this work was the investigation of purely n-conducting materials based on electron-deficient borane and viologen polymers. The corresponding precursor molecules should be polymerised on platinum electrodes by reductive electropolymerisation. However, a reductive polymerisation was not possible for the borane monomer 19 which is thought to be due to a strong localisation of the unpaired electron on the central boron atom of the radical anion. An electropolymerisation of the cyano-substituted bispyridinio-compound 17 failed because of the poor quality of CN- as a leaving group. Thus, a synthesis of the analogous isomer 18 was developed, in which the cyano-substituents were exchanged by the better leaving group Cl-. The viologen polymer poly-18, which can be regarded as an electron-deficient iso-electronic analogue of poly(para-phenylene), was successfully deposited on a platinum electrode by reductive electropolymerisation of 18. Poly-18 can be reversibly n-doped at comparably low potentials; however, at higher potentials the polymer is overcharged and destroyed irreversibly. As the synthetic strategy for 18 allows the variation of both spacer unit and leaving group in the last two steps of the reaction sequence, a series of analogous compounds can be easily synthesised using this route.},
  subject      = {Polymerhalbleiter},
  language  = {en}
}
@phdthesis{Denker2006,
  author    = {Denker, Katrin},
  title     = {Isolation and characterization of channel-forming proteins in the outer membrane of E. coli and Borrelia species},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-16955},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2006},
  abstract  = {In this study pore forming proteins of the gram-negative bacteria B. burgdorferi, B. duttonii and E.coli were investigated. Therefore the study is subdivided into three parts. In the first part outer membrane preparation of three relapsing fever Borrelia were investigated. In the second part the putative TolC homologue BB0124 of B. burgdorferi, the Lyme borreliosis agent, was studied. In the last part the influence of point mutants within the greasy slide of the maltose specific porin (LamB) of E. coli were shown. In the first part of this study outer membrane preparations of three Borrelia relapsing fever strains have been studied for pore-forming activity in the black lipid bilayer assay. Histograms of conductance fluctuations were obtained from single-channel experiments with outer membrane preparations of B. hermsii, B. recurentis and B. duttonii. All strains had a different conductance fluctuation pattern with a broad range of single-channel conductance values varying from 0.5 nS - 11 nS. Common for all three strains was a high pore-forming activity at around 0.5 nS. Furthermore the proteins of the outer membrane of B. duttonii were separated by chromatographic methods. Some eluate fractions contained a channel-forming protein, which was forming stable channels with a single-channel conductance of 80 pS in 1 M KCl. Characterization of this channel showed that it is slightly anionic selective and voltage independent. The small single-channel conductance suggests that it is a specific pore. However, a substrate specificity could not be determined. In the second part, for the B. burgdorferi HB19 and p66 knock out strain HB19/K02, their outer membrane preparations were characterized in the black lipid bilayer assay. Comparing the histograms of single-channel conductions fluctuations of both strains showed no single-channel activity at 11.5 nS for the p66 knock out strain. This verifies earlier studies that P66 is a pore-forming protein in B. burgdorferi. Furthermore, one fraction obtained by anion exchange chromatography of the p66 knock out outer membrane protein preparation showed a uniform channel-forming activity with a single channel conductance of 300 pS. The electrophysically characterization of the 300 pS channel showed that it is not ionselective or voltage dependent. By mass spectrometry using peptide mass finger prints, BB0142 could be identified as the sole channel forming candidate in the active fraction. A BLAST search and a conserved domain search showed that BB0142 is a putative TolC homologue in B. burgdorferi. Furthermore the location of the bb0142 gene within the chromosome is in an operon encoding a multidrug efflux pump. In this study the expression of an outer membrane component of a putative drug efflux system of B. burgdorferi was shown for the first time. In the third part functional studies of the maltooligosaccharide-specific LamB channel were performed. The 3D-structure of LamB suggests that a number of aromatic residues (Y6, Y41, W74, F229, W358 and W420) within the channel lumen is involved in carbohydrate and ion transport. All aromatic residues were replaced by alanine (A) scanning mutagenesis. Furthermore, LamB mutants were created in which one, two, three, four and five aromatic residues were replaced to study their effects on ion and maltopentaose transport through LamB. The purified mutant proteins were reconstituted into lipid bilayer membranes and the single-channel conductance was studied. The results suggest that all aromatic residues provide some steric hindrance for ion transport through LamB. Highest impact is provided by Y6 and Y41, which are localized opposite to Y118, which forms the central constriction of the LamB channel. Stability constants for binding of maltopentaose to the mutant channels were measured using titration experiments with the carbohydrate. The mutation of one or several aromatic amino acids led to a substantial decrease of the stability constant of binding. The highest effect was observed when all aromatic amino acids were replaced by alanine because no binding of maltopentaose could be detected in this case. However, binding was again possible when Y118 was replaced by tryptophane (W). The carbohydrate-induced block of the channel function could also be used for the study of current noise through the different mutant LamB-channels. The analysis of the power density spectra of some of the mutants allowed the evaluation of the on- and off-rate constants (k1 and k-1) of carbohydrate binding to the binding-site inside the channels. The results suggest that both on- and off-rate constants were affected by the mutations. For most mutants k1 decreased and k-1 increased.},
  subject      = {Escherichia coli},
  language  = {en}
}
@phdthesis{Pils2005,
  author    = {Pils, Birgit},
  title     = {Insights into the evolution of protein domains give rise to improvements of function prediction},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-16805},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2005},
  abstract  = {The growing number of uncharacterised sequences in public databases has turned the prediction of protein function into a challenging research field. Traditional annotation methods are often error-prone due to the small subset of proteins with experimentally verified function. Goal of this thesis was to analyse the function and evolution of protein domains in order to understand molecular processes in the cell. The focus was on signalling domains of little understood function, as well as on functional sites of protein domains in general. Glucosaminidases (GlcNAcases) represent key enzymes in signal transduction pathways. Together with glucosamine transferases, they serve as molecular switches, similar to kinases and phosphatases. Little was known about the molecular function and structure of the GlcNAcases. In this thesis, the GlcNAcases were identified as remote homologues of N-acetyltransferases. By comparing the homologous sequences, I was able to predict functional sites of the GlcNAcase family and to identify the GlcNAcases as the first family member of the acetyltransferase superfamily with a distinct catalytic mechanism, which is not involved in the transfer of acetyl groups. In a similar approach, the sensor domain of a plant hormone receptor was studied. I was able to predict putative ligand-binding sites by comparing evolutionary constraints in functionally diverged subfamilies. Most of the putative ligand-binding sites have been experimentally confirmed in the meantime. Due to the importance of enzymes involved in cellular signalling, it seems impossible to find substitutions of catalytic amino acids that turn them catalytically inactive. Nevertheless, by scanning catalytic positions of the protein tyrosine phosphatase families, I found many inactive domains among single domain and tandem domain phosphatases in metazoan proteomes. In addition, I found that inactive phosphatases are conserved throughout evolution, which led to the question about the function of these catalytically inactive phosphatase domains. An analysis of evolutionary site rates of amino acid substitutions revealed a cluster of conserved residues in the apparently redundant domain of tandem phosphatases. This putative regulatory center might be responsible for the experimentally verified dimerization of the active and inactive domain in order to control the catalytic activity of the active phosphatase domain. Moreover, I detected a subgroup of inactive phosphatases, which presumably functions in substrate recognition, based on different evolutionary site rates within the phosphatase family. The characterization of these new regulatory modules in the phosphatase family raised the question whether inactivation of enzymes is a more general evolutionary mechanism to enlarge signalling pathways and whether inactive domains are also found in other enzyme families. A large-scale analysis of substitutions at catalytic positions of enzymatic domains was performed in this work. I identified many domains with inactivating substitutions in various enzyme families. Signalling domains harbour a particular high occurrence of catalytically inactive domains indicating that these domains have evolved to modulate existing regulatory pathways. Furthermore, it was shown that inactivation of enzymes by single substitutions happened multiple times independently in evolution. The surprising variability of amino acids at catalytic positions was decisive for a subsequent analysis of the diversity of functional sites in general. Using functional residues extracted from structural complexes I could show that functional sites of protein domains do not only vary in their type of amino acid but also in their structural location within the domain. In the process of evolution, protein domains have arisen from duplication events and subsequently adapted to new binding partners and developed new functions, which is reflected in the high variability of functional sites. However, great differences exist between domain families. The analysis demonstrated that functional sites of nuclear domains are more conserved than functional sites of extracellular domains. Furthermore, the type of ligand influences the degree of conservation, for example ion binding sites are more conserved than peptide binding sites. The work presented in this thesis has led to the detection of functional sites in various protein domains involved in signalling pathways and it has resulted in insights into the molecular function of those domains. In addition, properties of functional sites of protein domains were revealed. This knowledge can be used in the future to improve the prediction of protein function and to identify functional sites of proteins.},
  subject      = {Dom{\"a}ne <Biochemie>},
  language  = {en}
}
@phdthesis{Pozgajova2005,
  author    = {Pozgajova, Miroslava},
  title     = {Studies on formation and stabilization of pathological thrombi in vivo},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-16784},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2005},
  abstract  = {Platelet activation and adhesion resulting in thrombus growth is essential for normal hemostasis, but can lead to irreversible, life-threatening vessel occlusion. In the current study, the contribution of platelet integrins, activation receptors and the contact system of blood coagulation in such pathological conditions was investigated in mice.},
  subject      = {Thrombose},
  language  = {en}
}
@phdthesis{Toben2005,
  author    = {Toben, Catherine Gisela},
  title     = {Generation and analysis of transgenic mice expressing ovalbumin as a neo-self antigen under control of the myelin basic protein promoter},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-16708},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2005},
  abstract  = {In this project two novel murine autoimmune models were to be established in an attempt to further investigate the nervous system disorders of Multiple Sclerosis and Guillain Barr{\´e} Syndrome. Previous experimental autoimmune encephalomyelitis (EAE) and experimental autoimmune neuritis (EAN) models have demonstrated that T cells play a major role in these diseases. Which roles CD4 and CD8 T cells specifically have in the initiation, propagation and termination of an autoimmune nervous system disorder remains controversial. To this end two transgenic mice specifically expressing the neo-antigen (Ag) ovalbumin (OVA) in either the central nervous system (CNS) or peripheral nervous system (PNS) were to be generated. The myelin basic protein (MBP) is a major component of the myelin sheath both within the CNS and the PNS. Therefore the MBP promoter was employed for its distinct regulatory elements to facilitate exclusive CNS or PNS OVA expression. The adoptive transfer of OVA specific MHCI restricted (OT-I) and MHCII restricted (OT-II) TCR Tg T cells extended the OVA Tg mouse model by allowing potentially encephalitogenic T cells to be tracked in vivo. Specificity for the target Ag should enable the dynamic role of antigen specific T cells in neuroinflammatory diseases to be revealed in more detail.},
  subject      = {Multiple Sklerose},
  language  = {en}
}
@phdthesis{Kleinsteuber2005,
  author    = {Kleinsteuber, Martin},
  title     = {Jacobi-type methods on semisimple Lie algebras : a Lie algebraic approach to numerical linear algebra},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-16454},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2005},
  abstract  = {Es wird eine Lie-algebraische Verallgemeinerung sowohl des klassischen als auch des Sortier-Jacobi-Verfahrens f{\"u}r das symmetrische Eigenwertproblem behandelt. Der koordinatenfreie Zugang erm{\"o}glicht durch eine neue Betrachtungsweise die Vereinheitlichung strukturierter Eigen- und Singul{\"a}rwertprobleme, darunter bis dato noch nicht betrachtete F{\"a}lle. F{\"u}r beide Verfahren wird lokal quadratische Konvergenz, sowohl f{\"u}r den regul{\"a}ren als auch f{\"u}r den irregul{\"a}ren Fall, gezeigt. Die Analyse und Verallgemeinerung der sog. speziellen Sweeps f{\"u}r das symmetrische Eigenwertproblem f{\"u}hrt zu neuen Sweep-Methoden f{\"u}r strukturierte Eigen- und Singul{\"a}rwertprobleme, die ein besseres Konvergenzverhalten als die bisher bekannten aufweisen.},
  subject      = {Eigenwert},
  language  = {en}
}
@phdthesis{Bradeanu2005,
  author    = {Bradeanu, Ioana Lavinia},
  title     = {Photoionization and excitation of free variable size van der Waals clusters in the inner shell regime},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-16372},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2005},
  abstract  = {The studies presented in this thesis deal with resonant and non-resonant excitation of free variable size clusters using synchrotron radiation in the soft X-ray regime. The post collision interaction (PCI) effect is investigated in free variable size krypton and argon clusters near the Kr 3d and Ar 2p ionization energies. The core ionization energies of surface and bulk sites in variable size clusters can be clearly distinguished. This is mostly due to the polarization screening. It is found that the asymmetry, which is a consequence of PCI, is characteristically smaller for clusters than for isolated atoms. Moreover, there is less asymmetry for bulk sites than for surface sites in variable size rare gas clusters. We assign the results in terms of mechanisms that are based on quantum mechanical models of post collision interaction. Complementary experiments on the photoionization of free van der Waals clusters are performed by using zero kinetic energy (ZEKE) photoelectron spectroscopy in the Ar 2p-, Kr 3d-, Ne 1s-, and N2-regimes. The experimental approach is also suitable to detect cluster size dependent changes in electronic structure. This also allows us to study post collision interaction in variable size clusters. The parameters of the PCI profiles deduced for ZEKE experiments indicate that there are no significant changes in core ionization dynamics compared to near-threshold experiments. Results from model calculations in Kr 3d ionization energy indicate that different geometric sites can be clearly distinguished from each other by their substantial shift in Kr 3d ionization energy, though the dimer shows almost the same Kr 3d ionization energy as the free atom. A comparison with the experimental results indicates that there is resemblance with the model calculations, even though close-lying ionization energies are blended and require deconvolutions of the experimental spectra. It is evident from the present work that one can observe distinct shifts in core ionization energies in van der Waals clusters that are formed in wide size distributions of a jet expansion. The emission of ultraviolet fluorescence radiation from variable size argon clusters is investigated with high spectral resolution in the Ar 2p-excitation regime. The fluorescence excitation spectra reveal strong fluorescence intensity in the Ar 2p-continuum, but no evidence for the occurrence of discrete low-lying core-exciton states in the near-edge regime. This finding is different from the absorption and photoionization cross sections of argon clusters and the solid. The dispersed fluorescence shows a broad molecular band centered near 280 nm. The present results are consistent with the formation of singly charged, excited moieties within the clusters, which are assigned as sources of the radiative relaxation in the 280 nm regime. A fast energy transfer process (interatomic Coulombic decay, ICD) is assigned to be primarily the origin of these singly charged, excited cations besides intra-cluster electron impact ionization by Auger electrons. Our findings give possibly the first experimental evidence for ICD in the core level regime. Free, variable size nitrogen clusters are investigated in the N 1s excitation regime in comparison with the free molecule and solid nitrogen. The conversion of Rydberg states into core excitons, surface and bulk, was studied. The experimental results are simulated by ab initio calculations using (N2)13 as a reasonable prototype cluster structure that allows us to simulate both surface and bulk properties in comparison with the isolated molecule. The present results clearly show that there are specific properties, such as molecular orientation, in molecular van der Waals clusters, which do not exist in atomic van der Waals clusters. It is shown that inner and outer surface sites give rise to distinct energy shifts of the low lying surface core excitons.},
  subject      = {Photoionisation},
  language  = {en}
}
@phdthesis{Kackstaetter2003,
  author    = {Kackstaetter, Uwe R.},
  title     = {Contaminant diffusion and sorption of an artificial leachate in selected geologic barriers of Frankonia, Bavaria, Germany},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-16151},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2003},
  abstract  = {The geologic barrier represents the final contact between a landfill and the environment. Ideally suited are clays and mudstones because of sufficient vertical and lateral extent, low hydraulic conductivities and high sorptive characteristics. Since hydraulic conductivity is no longer the single criteria to determine transport and retardation of contaminants in geologic landfill barrier materials, diffusive and sorptive characteristics of 4 different clay and mudstone lithologies in Northern Bavaria, were investigated. Cored samples from various depths were included in this study and subjected to evaluations of geochemistry, mineralogy, physical parameters, sorption and diffusion. A transient double reservoir with decreasing source concentration was designed and constructed using clear polycarbonate cylinders for undisturbed clay plugs of 2 to 4cm thickness. Samples were also fitted with internal electrical conductivity probes to determine the migration of the diffusive front. A multi chemical species synthetic landfill leachate was contrived to simulate and evaluate natural pollutant conditions. A computational method for determining mineralogy from geochemical data was also developed. It was found that sorptive processes are mostly controlled by the quality and type of fine grained phyllosilicates and the individual chemical species involved exhibited linear, Freundlich, as well as Langmuir sorption properties. Effective diffusion and sorption coefficients were also determined using POLLUTEv6 (GAEA, 1997) software and receptor reservoir concentrations for K, Na, Ca, Cu, NH4, Cl, NO3, SO4, and concentration totals at predetermined time intervals. Anion exclusion proved to be a major factor in the diffusion process and was used to explain many observed anomalies. Furthermore, diffusion coefficients were found not to be static with a multi chemical species leachate, but actually varied during the course of the experiment. Strong indications point toward the major role of pore space quality, shape, and form as control of diffusive properties of a geologic barrier. A correlation of CECNa of the samples with De may point to a possible deduction of diffusive properties for multi species leachates without extensive and time consuming laboratory tests},
  language  = {en}
}
@phdthesis{Boehler2005,
  author    = {B{\"o}hler, Elmar},
  title     = {Algebraic closures in complexity theory},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-16106},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2005},
  abstract  = {We use algebraic closures and structures which are derived from these in complexity theory. We classify problems with Boolean circuits and Boolean constraints according to their complexity. We transfer algebraic structures to structural complexity. We use the generation problem to classify important complexity classes.},
  subject      = {Komplexit{\"a}tstheorie},
  language  = {en}
}
@phdthesis{Amthor2005,
  author    = {Amthor, Stephan},
  title     = {Redox properties of Bis-Triarylamines and ligand properties of Thianthrenophane},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-15916},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2005},
  abstract  = {The one electron oxidation potential of ten TAAs with all permutations of Cl , OMe- and Me-substituents in the three p-positions were determined by CV. The half wave potential of the first oxidation wave correlates linearly with the number of Cl- and OMe-substituents. AM1-CISD derived values of the absorption energies are in good agreement with the experiments but differ strongly for the oscillator strengths as well as for neutral compounds and their corresponding mono radical cations. The small solvent dependence of the experimental UV/Vis spectra in CH2Cl2 and MeCN reflects a minor charge transfer character of the electronic transitions. The UV/Vis/NIR spectra of the series of TAAs and their corresponding radical cations and the AM1 computations reveal that even small substituents may lead to strong symmetry breaking and to a modified electronic structure. The spectroscopic properties of a series of four bis-TAA donor-bridge-donor X-B-X dimers, composed of two asymmetric TAA chromophores (monomers) were investigated. UV/vis-, fluorescence and transient absorption spectra were recorded and compared with those of the corresponding X-B monomers. The excited states of the dimers are described as MV states which show, depending on the chemical nature of the bridge, a varying amount of interactions. It was found that superradiant emission only proceeds in the case of weak and medium coupling. Whether the first excited state potential energy surface of the dimers is a single minimum or a double minimum potential depends on the solvent polarity and the electronic coupling. In the latter case, the dimer relaxes in a symmetry broken CT state. The [2.2]paracyclophane bridged dimer is an example for a weakly coupled system, because the spectroscopic behavior is very similar to the corresponding p xylene monomer. In contrast, anthracene as well as p-xylene bridges mediate a stronger coupling and reveal a significant cooperative influence on the optical properties. A series of [2.2]paracylophane bridged bis-TAA MV radical cations X-B-X+ were analyzed by a GMH three-level model which takes two transitions into account: the IV-CT band and the bridge band. From the GMH analysis, one can conclude that the [2.2]paracyclophane moiety is not the limiting factor which governs the intramolecular charge transfer. The electronic interactions are of course smaller than direct conjugation but from the order of magnitude of the couplings of the [2.2]paracyclophane MV species it can be assumed that this bridge is able to mediate significant through-space and through-bond interactions. From the exponential dependence of the electronic coupling V between the two TAA localized states on the distance r between the two redox centers, it was inferred that the HT proceeds via superexchange mechanism. The analysis reveals that even significantly longer conjugated bridges should still mediate significant electronic interactions, because the decay constant of a series of conjugated MV species is small. The absorption properties of a series of bis-TAA-[2.2]paracyclophane dications X+-B-X+ were presented. The localized and the CT transitions of these dications are explained and analyzed by an exciton coupling model which also considers the photophysical properties of the monomeric TAA radical cations. Together with AM1-CISD calculated transition moments, experimental transition moments and transition energies of the bis-TAA dications were used to calculate electronic couplings by a GMH approach. These couplings are a measure for interactions of the excited MV CT states. The modification of the diabatic states reveals similarities of the GMH three-level model and the exciton coupling model. Comparison of the two models shows that the transition moment between the excited mixed-valence states of the dimer equals the dipole moment difference of the ground and the excited bridge state of the corresponding monomer. Thianthrenophane (1) has a cavity which offers enough room to potentially enable endohedral coordination to small ions or molecules. For the complexation of silver(I) perchlorate, the complex stability constants of thianthrenophane logK1=5.45 and of thianthrene logK2=9.16 were determined by UV/Vis titration. Single competition transport experiments with ten metal salts demonstrate a very high selectivity of thianthrenophane as a carrier for silver(I) and a distinctly higher transport rate compared to carriers such as thianthrene and 14-ane-S4. Although the X-ray crystal structure analysis of the polymeric [Ag(1)]ClO4 shows an exohedral coordination to silver(I), the formation of an endohedral [Ag(1)]+ complex is suggested to be the explanation for the unusual carrier selectivity of silver(I) by 1 in bulk liquid membrane.},
  subject      = {Triarylamine},
  language  = {en}
}
@phdthesis{Kriegisch2005,
  author    = {Kriegisch, Volker},
  title     = {Electron transfer processes between organic redox centres and electrodes via active bridges in self-assembled monolayers},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-15892},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2005},
  abstract  = {Cyclovoltammetrische Messungen der Ferrocenalkylthiole 1 - 3 belegen, dass homogene, gemischte Monolagen aus redoxaktiven Verbindungen und redoxinaktiven Alkylthiolen gebildet werden. Die von Creager et al. bestimmten ET Raten der Ferrocenalkylthiole 1 - 3 konnten hierbei verifiziert werden. Wie erwartet erfolgt eine Abnahme der ET Geschwindigkeit bei einer Kettenverl{\"a}ngerung des Alkylspacers von 2 nach 3. Eine unterschiedliche Konnektivit{\"a}t zwischen Redoxzentrum und Alkylspacer, z. B. die Einf{\"u}hrung einer Carbonyl-Funktion im Falle von 1, unter Beibehaltung der Kettenl{\"a}nge zeigt keinen bemerkbaren Einfluß auf den ET. Trotzt vergleichbaren Abstands der aromatischen Ferrocenthiole 4 und 5 zu der C8-Alkyl-Verbindung 2 zwischen Redoxzentrum und Elektrode, weisen diese aufgrund ihrer starken Konjugation sehr hohe ET Geschwindigkeiten auf. Die elektronischen Kopplungsfaktoren selbst deuten auf einen nichtadiabtischen ET zwischen Redoxzentrum und Elektrode hin. Wie erwartet kommt es zu einem Anwachsen der Kopplungsfaktoren bei sich verk{\"u}rzender Kettenl{\"a}nge oder bei Einf{\"u}hrung konjugierter Spacersysteme. Zusammenfassend kann gesagt werden, dass Erfahrungen hinsichtlich der Pr{\"a}paration der Monolagen gesammelt, die gemessenen ET Raten f{\"u}r der literaturbekannten Verbindungen 1 - 3 best{\"a}tigt und diese Informationen auf die konjugierten Verbindungen 4 und 5 angewandt werden konnten. Im zweiten Teil wurden die Triarylamin- (29, 32) und Phenothiazinalkylthiole (35) bez{\"u}glich ihres ET Verhaltens in gemischten Monolagen untersucht. Mittels Cyclovoltammetrie konnte gezeigt werden, daß einheitlich geformte, verd{\"u}nnte Monolagen vorliegen. Die ET Raten der Triarylamin- (29, 32) und Phenithiazinalkylthiole (35) sind jedoch um den Faktor 10 bis 100 h{\"o}her als vergleichbare Ferrocenalkylthiole gleicher Kettenl{\"a}nge [1, 2], wohingegen f{\"u}r Monolagen, welche [Ru(bpy)2(pp)]+-Alkythiole enthalten, {\"a}quivalente Werte gefunden wurden [3]. Die ET Geschwindigkeit wird von zwei Parametern beeinflusst: dem elektronischen Kopplungsmatrixelement und der Regorganisationsenergie \&\#61548;\&\#61472; [4]. Die ET Geschwindigkeit in Donor-substituierten Alkylthiolen wird haupts{\"a}chlich durch \&\#61548; beeinflusst und sogar kleine {\"A}nderungen dieser zeigen eine große Auswirkung auf die zu untersuchenden Prozesse. Aus diesem Grund wird eine Zunahme der ET Geschwindigkeit von Ferrocen (hohe Reorganisationsenergie) {\"u}ber die Phenothiazinverbindung 35 und [Ru(bpy)2(pp)]+ zu den Triarylaminchromophoren 29 und 32 (niedrige Reorganisationsenergie) beobachtet. Weiterhin spielt, im Gegensatz zu Beobachtung von Creager et al. an {\"a}quivalenten Ferrocenverbingungen, die Anbindung des Redoxzentrums an den Alkylspacer eine bedeutende Rolle. Im Falle der elektronenreichen Ether-verbr{\"u}ckten Verbindung 29 wird der ET nicht alleine durch \&\#61548;, sondern ebenso durch mesomere Effekte bestimmt. Bei 29 kommt es durch Lokalisation der positiven Ladung nahe der Ether Funktion formal zu einer Kettenverk{\"u}rzung um eine „Methyleneinheit", welche schließlich in h{\"o}heren ET Geschwindigkeiten resultiert. Im dritten Teil dieser Dissertation wurde ein Serie „molekularer Dr{\"a}hte" bestehend aus Methoxy- oder Chlorid-substituierten Triarylamin- und Phenothiazinverbindungen mit unterschiedlichen Br{\"u}ckeneinheiten und Br{\"u}ckenl{\"a}ngen zwischen Redoxzentrum und Ankerfunktion dargestellt und im Hinblick auf ihr ET Verhalten untersucht. Durch cyclovoltammetrische und UV/Vis-spektroskopische Untersuchungen konnte gezeigt werden, dass sowohl die Oxidationspotentiale als auch die energetischen Zust{\"a}nde der Chromophore recht gut durch Einf{\"u}hrung unterschiedlicher Redoxzentren und Br{\"u}ckeneinheiten beeinflusst werden k{\"o}nnen. Trotz erfolgreicher Kontrolle der Dichte der Chromophoreinheiten in den gemischten Monolagen konnte nur f{\"u}r die Verbindungen 49, 52 und 87 mit Nitril-substituierten Br{\"u}ckeneinheiten verl{\"a}ssliche ET Geschwindigkeiten erhalten werden. Bei diesen Chromphoren ist ein Absinken der ET Geschwindigkeit bei zunehmender Dichte der redoxaktiven Molek{\"u}le in den gemischten Monolagen zu beobachten, welche auf eine {\"A}nderung der Adsorptionsgeometrie hindeutet. Bei zunehmender Packungsdichte der Chromophore f{\"u}hrt dies zu einer aufrechteren Stellung der redoxaktiven Spezies. F{\"u}r alle anderen Verbindungen konnten keine Werte aufgrund der zu schnellen ET Geschwindigkeiten ermittelt werden. Konformelle, wie auch die sehr geringe Abstandsabh{\"a}ngigkeit des ET, resultieren in hohen ET Geschwindigkeiten oder auch ung{\"u}nstige HOMO-LUMO Energien bez{\"u}glich des Donors, der Br{\"u}cke und der Elektrode sind Gr{\"u}nde f{\"u}r dieses Verhalten. Die Tatsache, dass Verbindung 49 und 52 beinahe die gleichen Geschwindigkeitskonstanten des ETs unabh{\"a}ngig von der Anzahl der Br{\"u}ckeneinheiten (n = 2, n = 3) besitzen, deutet darauf hin, dass ein Hopping-Prozess stattfindet, bei welchem eine geringere L{\"a}ngenabh{\"a}ngigkeit des ETs als bei eine Superexchange-Mechanismus zu erwarten ist.},
  subject      = {Monoschicht},
  language  = {en}
}
@phdthesis{Ruester2005,
  author    = {R{\"u}ster, Christian},
  title     = {Magnetotransport effects in lateral and vertical ferromagnetic semiconductor junctions},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-15554},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2005},
  abstract  = {This work is an investigation of giant magnetoresistance (GMR), tunneling magnetoresistance (TMR) and tunneling anisotropic magnetoresistance (TAMR)effects in (Ga,Mn) based ferromagnetic semiconductor junctions. Detailed results are published in the following articles: [1] C. R{\"u}ster, T. Borzenko, C. Gould, G. Schmidt, L.W. Molenkamp, X. Liu, T.J.Wojtowicz, J.K. Furdyna, Z.G. Yu and M. Flatt´e, Very Large Magnetoresistance in Lateral Ferromagnetic (Ga,Mn)As Wires with Nanoconstrictions, Physical Review Letters 91, 216602 (2003). [2] C. Gould, C. R{\"u}ster, T. Jungwirth, E. Girgis, G.M. Schott, R. Giraud, K. Brunner, G. Schmidt and L.W. Molenkamp, Tunneling Anisotropic Magnetoresistance: A Spin-Valve-Like Tunnel Magnetoresistance Using a Single Magnetic Layer, Physical Review Letters 93, 117203 (2004). [3] C. R{\"u}ster, C. Gould, T. Jungwirth, J. Sinova, G.M. Schott, R. Giraud, K. Brunner, G. Schmidt and L.W. Molenkamp, Very Large Tunneling Anisotropic Magnetoresistance of a (Ga,Mn)As/GaAs/(Ga,Mn)As Stack, Physical Review Letters 94, 027203 (2005). [4] C. R{\"u}ster and C. Gould, T. Jungwirth, E. Girgis, G.M. Schott, R. Giraud, K. Brunner, G. Schmidt and L.W. Molenkamp, Tunneling anisotropic magnetoresistance: Creating a spin-valve-like signal using a single ferromagnetic semiconductor layer, Journal of Applied Physics 97, 10C506 (2005).},
  subject      = {Galliumarsenid},
  language  = {en}
}
@phdthesis{Sohns2005,
  author    = {Sohns, Andreas},
  title     = {Halfsandwich iron complexes with Silanol-functionalized Cyclopentadienyl ligands},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-15809},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2005},
  abstract  = {...},
  subject      = {Halbsandwich-Verbindungen},
  language  = {en}
}
@phdthesis{Schmitt2005,
  author    = {Schmitt, Rainer},
  title     = {P-H-functionalized Phosphenium Tungsten Complexes : exchange reactions at the phosphorus and cycloadditions with heteroallenes},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-15818},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2005},
  abstract  = {...},
  subject      = {Phospheniumkomplexe},
  language  = {en}
}
@phdthesis{Schaefer2005,
  author    = {Sch{\"a}fer, Matthias},
  title     = {Molecular mechanisms of floor plate formation and neural patterning in zebrafish},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-15789},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2005},
  abstract  = {The vertebrate spinal cord is composed of billions of neurons and glia cells, which are formed in a highly coordinated manner during early neurogenesis. Specification of these cells at distinct positions along the dorsoventral (DV) axis of the developing spinal cord is controlled by a ventrally located signaling center, the medial floor plate (MFP). Currently, the origin and time frame of specification of this important organizer are not clear. During my PhD thesis, I have analyzed the function of the novel secreted growth factor Midkine-a (Mdka) in zebrafish. In higher vertebrates, mdk and the related factor pleiotrophin (ptn) are widely expressed during embryogenesis and are implicated in a variety of processes. The in-vivo function of both factors, however, is unclear, as knock-out mice show no embryonic phenotype. We have isolated two mdk co-orthologs, mdka and mdkb, and one single ptn gene in zebrafish. Molecular phylogenetic analyses have shown that these genes evolved after two large gene block duplications. In contrast to higher vertebrates, zebrafish mdk and ptn genes have undergone functional divergence, resulting in mostly non-redundant expression patterns and functions. I have shown by overexpression and knock-down analyses that Mdka is required for MFP formation during zebrafish neurulation. Unlike the previously known MFP inducing factors, mdka is not expressed within the embryonic shield or tailbud but is dynamically expressed in the paraxial mesoderm. I used epistatic and mutant analyses to show that Mdka acts independently from these factors. This indicates a novel mechanism of Mdka dependent MFP formation during zebrafish neurulation. To get insight into the signaling properties of zebrafish Mdka, the function of both Mdk proteins and the candidate receptor Anaplastic lymphoma kinase (Alk) have been compared. Knock-down of mdka and mdkb resulted in the same reduction of iridophores as in mutants deficient for Alk. This indicates that Alk could be a putative receptor of Mdks during zebrafish embryogenesis. In most vertebrate species a lateral floor plate (LFP) domain adjacent to the MFP has been defined. In higher vertebrates it has been shown that the LFP is located within the p3 domain, which forms V3 interneurons. It is unclear, how different cell types in this domain are organized during early embryogenesis. I have analyzed a novel homeobox gene in zebrafish, nkx2.2b, which is exclusively expressed in the LFP. Overexpression, mutant and inhibitor analyses showed that nkx2.2b is activated by Sonic hedgehog (Shh), but repressed by retinoids and the motoneuron-inducing factor Islet-1 (Isl1). I could show that in zebrafish LFP and p3 neuronal cells are located at the same level along the DV axis, but alternate along the anteroposterior (AP) axis. Moreover, these two different cell populations require different levels of HH signaling and nkx2.2 activities. This provides new insights into the structure of the vertebrate spinal cord and suggests a novel mechanism of neural patterning.},
  subject      = {Zebrab{\"a}rbling},
  language  = {en}
}
@phdthesis{Bayer2005,
  author    = {Bayer, Tanja},
  title     = {Toxicity and biotransformation of 1,1,1,3,3-Pentafluoropropane, 3,3,3-Trifluoropropionic acid and 1,1,1,3-Tetrachloropropane},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-15731},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2005},
  abstract  = {The biotransformation of 1,1,1,3,3-pentafluoropropane was investigated in rats and in in vitro systems. First, the metabolites were identified in vivo using GC/MS and 19F NMR analysis. The main metabolite was identified as trifluoroacetic acid, the minor metabolite as 3,3,3-trifluoropropionic acid and as a cleavage product, inorganic fluoride was found. As the in vitro system, liver microsomes from rat and human samples and rat liver homogenates were used. Trifluoroacetic acid and 3,3,3 trifluoropropionic acid were confirmed in vitro as metabolic intermediates, following biotransformation of 1,1,1,3,3-pentafluoropropane by the cytochrome P-450-system. Studies, designed for clarifying the cardiotoxicity of 1,1,1,3,3-pentafluoropropane were driven by the hypothesis that 3,3,3-trifluoropropionic acid is the toxic agent. This was based on the lethal toxicity, which was observed in previous in vivo experiments. In addition, the point of its structural similarity to toxic agents as for example monofluoroacetic acid or of possible metabolic intermediates like difluoroacrylic acid with known toxicity were considered to support this assumption. However, trifluoroacetic acid was neglected as the sought-after toxic agent because of its different toxic effects, known from literature. Investigations on the biotransformation of 3,3,3-trifluoropropionic acid were performed and resulted in no metabolic activity and in poor elimination of 3,3,3-trifluoropropionic acid in vivo. The histopathological effects on the heart, which were observed in the 90-day oral toxicity study of 1,1,1,3,3-pentafluoropropane in rats, namely mononuclear inflammatory cell infiltrations and degenerated myocardial fibers, were not observed after a 28 day repeated exposure of up to 10 mg/kg b.w. of 3,3,3-trifluoropropionic acid. However, a single high dose of 3,3,3-trifluoropropionic acid lead to severe toxicological effects. The difference in the observed toxic effects after a single and repeated administration may be due to adaptive mechanisms in rats. The toxicological effects included clinical signs like ataxia, coma and cramps. The conditions of the rats suggested possible inhibition of the energy supply to the organism. Furthermore, the interference of 3,3,3-trifluoropropionic acid in the functionality of the organism was investigated. Experiments were performed in vitro in rat liver and heart mitochondria to investigate effects on the mitochondrial ß-oxidation. However, the transformation of the substrate [U14C] palmitic acid in the ß oxidation pathway was not inhibited by 3,3,3-trifluoropropionic acid. In addition, no cytotoxicity of 3,3,3 trifluoropropionic acid was observed in the cell culture systems. The main effect after a single dose of 3,3,3-trifluoropropionic acid was seen in clinical pathology and metabonomic analysis. The decrease in blood glucose is considered to have the most far-reaching consequences for the toxicity of 3,3,3-trifluoropropionic acid. If considering this change as the primary effect after a single dose, secondary effects, for example, the above-mentioned clinical signs could be explained. In addition, the observed high level of ketone bodies might have been responsible for life-threatening possible ketoacidosis. In general, ketoacidosis occurs after an imbalance between glycolysis, lipolysis, TCA cycle activity and respiratory function. Based on the results, ß-oxidation of fatty acids was not affected, and due to the decrease in glucose levels and the high levels of acetyl CoA, glycolysis was considered not to be impaired. Increased amounts of acetyl CoA might be a result of insufficient activity of the TCA cycle. However, the inhibition of the TCA cycle can be based on the impairment of specific enzymes and/or on the involvement of messenger substrates like insulin. Supporting the first mentioned aspect are decreased levels of TCA cycle intermediates, like \&\#945;-ketoglutarate or citrate, as seen in 1H-NMR spectra of urine. However, the second aspect would explain the drop in blood glucose with the impairment of glucose transporters or the impairment of the insulin balance. If a single dose of 3,3,3-trifluoropropionic acid had stimulated the insulin release, glycolysis would be activated, and high amounts of acetyl CoA would be produced. In case of impaired use by the TCA cycle, levels of ketone bodies would be increased. Experiments were designed to characterize the direct effect of 3,3,3-trifluoropropionic acid on rat insulinoma-derived INS-1 cells as possible increase in insulin release. Further investigations are necessary to answer in which step of the metabolic pathway 3,3,3-trifluoropropionic acid interferes or finally which specific enzyme is inhibited or activated by 3,3,3-trifluoropropionic acid, leading to the drop in blood glucose and finally in lethal toxicity.},
  subject      = {Fluorkohlenwasserstoffe},
  language  = {en}
}
@phdthesis{JimenezPearson2005,
  author    = {Jim{\´e}nez-Pearson, Mar{\´i}a-Antonieta},
  title     = {Characterization of the mechanisms of two-component signal transduction involved in motility and chemotaxis of Helicobacter pylori},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-15698},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2005},
  abstract  = {Flagellen-basierte Motilit{\"a}t und Chemotaxis stellen essentielle Pathogenit{\"a}tsfaktoren dar, die f{\"u}r die erfolgreiche Kolonisierung der Magenschleimhaut durch H. pylori notwendig sind. Die Mechanismen der Regulation der Flagellensynthese und das Chemotaxis-System von H. pylori weisen trotz einiger {\"A}hnlichkeiten fundamentale Unterschiede zu den Systemen anderer Bakterien auf. In H. pylori ist die Flagellensynthese durch eine komplex regulierte Kaskade kontrolliert, die Regulatorkomponenten wie das Zweikomponentensystem HP244/FlgR, die Sigma Faktoren 54 und 28 und den Sigma Faktor28-Antagonisten FlgM enth{\"a}lt. Das Signal, welches {\"u}ber die Histidinkinase des Zweikomponentensystems HP244/FlgR die Expression der Sigma Faktor54-abh{\"a}ngigen Klasse 2 Flagellengene reguliert, ist bisher noch nicht bekannt. Allerdings konnte mit HP137 ein Protein identifiziert werden, das im „yeast two-hybrid" System sowohl mit der korrespondierenden Kinase HP244 des Flagellenregulators FlgR, als auch mit der Flagellenkomponente FlgE´ interagiert (Rain et al., 2001). In dieser Arbeit wurde eine m{\"o}gliche Rolle von HP137 in einem R{\"u}ckkopplungsmechanismus untersucht, welcher die Aktivit{\"a}t der Histidinkinase in der Flagellenregulation kontrollieren k{\"o}nnte. Obwohl die Deletion des ORF hp137 zu einer unbeweglichen Mutante f{\"u}hrte, legen die erfolglosen Komplementations Experimente, sowie die Beobachtung, dass HP137 in vitro keinen bedeutenden Effekt auf die Aktivit{\"a}t der Histidinkinase HP244 hat nahe, dass HP137 weder in H. pylori noch im nahe verwandten C. jejuni direkt an der Flagellenregulation beteiligt ist. Das Chemotaxis-System von H. pylori unterscheidet sich vom gutuntersuchten Chemotaxis-System der Enterobakterien in einigen Aspekten. Zus{\"a}tzlich zu dem CheY Response Regulator Protein (CheY1) besitzt H. pylori eine weitere CheY-artige Receiver-Dom{\"a}ne (CheY2) welche C-terminal an die Histidinkinase CheA fusioniert ist. Zus{\"a}tzlich finden sich im Genom von H. pylori Gene, die f{\"u}r drei CheV Proteine kodieren die aus einer N-terminalen Dom{\"a}ne {\"a}hnlich CheW und einer C-terminalen Receiver Dom{\"a}ne bestehen, w{\"a}hrend man keine Orthologen zu den Genen cheB, cheR, and cheZ findet. Um einen Einblick in den Mechanismus zu erhalten, welcher die chemotaktische Reaktion von H. pylori kontrolliert, wurden Phosphotransferreaktionen zwischen den gereinigten Signalmodulen des Zweikomponentensystems in vitro untersucht. Durch in vitro-Phosphorylierungsexperimente wurde eine ATP-abh{\"a}ngige Autophosphorylierung der bifunktionellen Histidinkinase CheAY2 und von CheA´, welches ein verk{\"u}rztes Derivat von ChAY2 ohne Receiver-Dom{\"a}ne darstellt, nachgewiesen. CheA´ zeigt eine f{\"u}r an der Chemotaxis beteiligte Histidinkinasen typische Phosphorylierungskinetik mit einer ausgepr{\"a}gten exponentiellen Phase, w{\"a}hrend die Phosphorylierungskinetik von CheAY2 nur eine kurze exponentielle Phase aufweist, gefolgt von einer Phase in der die Hydrolyse von CheAY2~P {\"u}berwiegt. Es wurde gezeigt, dass die Anwesenheit einer der CheY2 Dom{\"a}ne die Stabilit{\"a}t der phosphorylierten P1 Dom{\"a}ne im CheA Teil des bifunktionellen Proteins beeinflusst. Außerdem wurde gezeigt, dass sowohl CheY1 als auch CheY2 durch CheAY2 phosphoryliert werden und dass die drei CheV Proteine die Histidinkinase CheA´~P dephosphorylieren, wenn auch mit einer im Vergleich zu CheY1 und CheY2 geringeren Affinit{\"a}t. Außerdem ist CheA´ in der Lage seine Phosphatgruppen auf CheY1 aus C. jejuni und CheY aus E. coli zu {\"u}bertragen. Retrophosphorylierungsexperimente weisen darauf hin, dass CheY1~P die Phosphatgruppe zur{\"u}ck auf die Histidinkinase CheAY2 {\"u}bertragen kann und dass die CheY2-Dom{\"a}ne in dem bifunktionellen Protein CheAY2 als „Phosphat Sink" agiert der den Phosphorylierungszustand und damit die Aktivit{\"a}t des frei diffundierbaren Proteins CheY1 reguliert, das vermutlich es mit dem Flagellenmotor interagiert. Es konnte weiterhin gezeigt werden, dass die unabh{\"a}ngige Funktion der beiden Dom{\"a}nen CheA´ und CheY2 f{\"u}r eine normale chemotaktische Signalgebung in vivo nicht ausreicht. In dieser Arbeit wurden also Hinweise auf eine komplexe Kaskade Phosphat{\"u}bertragungsreaktionen im chemotaktischen System von H. pylori gefunden, welches {\"A}hnlichkeiten zu dem Syteme-Chemotaxis von S. meliloti aufweist an denen multiple CheY Proteine beteiligt sind. Die Rolle der CheV Proteine bleibt im Moment unklar, jedoch k{\"o}nnte es sein, dass sie an einer weiteren Feinregulierung der Phosphatgruppen{\"u}bertragungsreaktionen in diesem komplexen chemotaktischen System beteiligt sind},
  subject      = {Helicobacter pylori},
  language  = {en}
}
@phdthesis{Dietzek2005,
  author    = {Dietzek, Benjamin},
  title     = {Ultrafast linear and non-linear spectroscopy : from biological light-receptors to artificial light-harvesting systems},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-15684},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2005},
  abstract  = {In the experiments presented in this work, linear and non-linear femtosecond time-resolved spectrsocopy were applied to investigate the structure-function and functiondynamics relationship in biological and artificially designed systems. The experiments presented in this work utilize femtosecond time-resolved transient absorption and transient grating as well as picosecond time-resolved fluorescence spectroscopy to investigate the photophysics and photochemistry of biological photoreceptors and address the light-induced excited-state processes in a particular molecular device that serves as a - structurally - very simple light-harvesting antenna and potentially as a catalysis-switch for the production of hydrogen in solution. The combination of white-light probe transient absorption and coherent transient grating spectroscopies yields spectral information about the excited state absorption in concert with high quality, high signal-to-noise kinetic transients, which allow for precise fitting and therefore very accurate time-constants to be extracted from the data. The use of femtosecond time-resolved transient grating spectroscopy is relatively uncommon in addressing questions concerning the excited-state reaction pathways of complex (biological) systems, and therefore the experiments presented in this work constitute according to the literature the first studies applying this technique to a a metalloporphyrin and an artificial light-harvesting antenna.},
  subject      = {Femtosekundenspektroskopie},
  language  = {en}
}
@phdthesis{Daumer2005,
  author    = {Daumer, Volker},
  title     = {Phase coherent transport phenomena in HgTe quantum well structures},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-15538},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2005},
  abstract  = {Although spintronics has aroused increasing interest, much fundamental research has to be done. One important issue is the control over the electronic spin. Therefore, spin and phase coherent transport are very important phenomena. This thesis describes experiments with mercury based quantum well structures. This narrow gap material provides a very good template to study spin related effects. It exhibits large Zeeman spin splitting and Rashba spin-orbit splitting. The latter is at least four to five times larger than in III-V semiconductors. Initially a short review on the transport theory was presented. The main focus as on quantisation effects that are important to understand the related experiments. Thus, Shubnikov-de Haas and the quantum Hall effect have been analysed. Due to the first fabrication of nanostructures on Hg-based quantum well samples, the observation of ballistic transport effects could be expected. Hence, the Landauer-B¨uttiker theory has been introduced which gives the theoretical background to understand such effects. With respect to the main topic of this thesis, phase coherence has been introduced in detail. Experiments, where coherence effects could be observed, have been explained theoretically. Here, possible measurement setups have been discussed, e.g., a ring shaped structure to investigate the Aharonov-Bohm and related effects. Due to the fact, that all experiments, described in this thesis, were performed on Hg-based samples, the exceptional position of such samples among the \&\#147;classical\&\#148; semiconductors has been clarified. Hg1-xMnx Te quantum wells are type-III QWs in contrast to the type-I QWs formed by e.g., GaAs/AlGaAs heterostructures. With a well width of more than 6 nm and a manganese content of less than 7\% they exhibit an inverted band alignment. Band structure calculations based on self consistent Hartree calculations have been presented. The common description of a diluted magnetic semiconductor with the Brillouin function has been introduced and the experiments to obtain the empiric parameters T0 and S0 have been presented. Rashba spin-orbit splitting and giant Zeeman splitting have been explained theoretically and the magnetic ordering of a spin glass as well as the relevant interactions therein have been discussed. The next chapter describes the first realisation of nanostructures on Hg-based heterostructures. Several material specific problems have been solved, but the unique features of this material system mentioned above justify the effort. Interesting new insight could be found and will be found with these structures. Onto a series of QW samples, cross-shaped structures with several lead widths have been patterned. With the non-local resistance measurement setup, evidence for quasiballistic transport was demonstrated in cross-shaped structures with lead widths down to 0.45 mm. The non-local bend resistance and a regime of rebound trajectories as well as the anomalous Hall effect could be identified. Monte-Carlo simulations of the classical electron trajectories have been performed. A good agreement with the experimental data has been achieved by taking a random scattering process into account. Encouraged by this success the technology has been improved and ring-shaped structures with radii down to 1 mm have been fabricated. Low temperature (below 100 mK), four terminal resistance measurements exhibit clear Aharonov-Bohm oscillations. The period of the oscillations agrees very well with a calculation that takes only the sample geometry into account. One goal using such a structure is the experimental prove of the spin-orbit Berry phase. Therefore an additional Shottky gate on top of the ring was needed. With this structure evidence for the Aharonov-Casher effect was observed. Here, a perpendicular applied electric field causes analogous oscillations as does the magnetic field in the AB effect. A subsequent change in the Rashba SO splitting due to several applied gate voltages while measuring the AB effect should reveal the SO Berry phase. Although initially evidence of a phase change was detected, a clear proof for the direct measurement of the SO Berry phase could not be found. In the future, with an advanced sample structure, e.g., with an additional Hall bar next to the ring, which permits a synchronous measurement of the Rashba splitting, it might be possible to measure the SO Berry phase directly. In manganese doped HgTe QWs two different effects simultaneously cause spin splitting: the giant Zeeman and the Rashba effect. By analysing the Shubnikovde Haas oscillations and the node positions of their beating pattern, it has been possible to separate these two effects. Whereas the Rashba effect can be identified by its dependence on the structure inversion asymmetry, varied by the applied gate voltage, the giant Zeeman splitting is extracted from its strong temperature dependence, because Rashba splitting is temperature independent. The analysis revealed, that the Rashba splitting is larger than or comparable to the giant Zeeman splitting even at moderately high magnetic fields. In an extraordinary HgMnTe QW sample, that exhibits the n= 1 quantum Hall plateau from less than 1 T up to 28 T, the anomalous Hall effect could be excluded. Intense studies on the temperature dependence of the QHE as well as band structure calculations have revealed this extraordinary behaviour to be an ordinary band structure effect of this system. In a series of mesoscopic structures on nonmagnetic and magnetic QWs, an investigation of the universal conductance uctuations have been carried out. In the},
  subject      = {Quecksilbertellurid},
  language  = {en}
}
@phdthesis{Masek2005,
  author    = {Masek, Pavel},
  title     = {Odor intensity learning in Drosophila},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-15546},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2005},
  abstract  = {It has been known for a long time that Drosophila can learn to discriminate not only between different odorants but also between different concentrations of the same odor. Olfactory associative learning has been described as a pairing between odorant and electric shock and since then, most of the experiments conducted in this respect have largely neglected the dual properties of odors: quality and intensity. For odorant-coupled short-term memory, a biochemical model has been proposed that mainly relies on the known cAMP signaling pathway. Mushroom bodies (MB) have been shown to be necessary and sufficient for this type of memory, and the MB-model of odor learning and short-term memory was established. Yet, theoretically, based on the MB-model, flies should not be able to learn concentrations if trained to the lower of the two concentrations in the test. In this thesis, I investigate the role of concentration-dependent learning, establishment of a concentration-dependent memory and their correlation to the standard two-odor learning as described by the MB-model. In order to highlight the difference between learning of quality and learning of intensity of the same odor I have tried to characterize the nature of the stimulus that is actually learned by the flies, leading to the conclusion that during the training flies learn all possible cues that are presented at the time. The type of the following test seems to govern the usage of the information available. This revealed a distinction between what flies learned and what is actually measured. Furthermore, I have shown that learning of concentration is associative and that it is symmetrical between high and low concentrations. I have also shown how the subjective quality perception of an odor changes with changing intensity, suggesting that one odor can have more than one scent. There is no proof that flies perceive a range of concentrations of one odorant as one (odor) quality. Flies display a certain level of concentration invariance that is limited and related to the particular concentration. Learning of concentration is relevant only to a limited range of concentrations within the boundaries of concentration invariance. Moreover, under certain conditions, two chemically distinct odorants could smell sufficiently similarly such, that they can be generalized between each other like if they would be of the same quality. Therefore, the abilities of the fly to identify the difference in quality or in intensity of the stimuli need to be distinguished. The way how the stimulus is analyzed and processed speaks in favor of a concept postulating the existence of two separated memories. To follow this concept, I have proposed a new form of memory called odor intensity memory (OIM), characterized it and compared it to other olfactory memories. OIM is independent of some members of the known cAMP signaling pathway and very likely forms the rutabaga-independent component of the standard two-odor memory. The rutabaga-dependent odor memory requires qualitatively different olfactory stimuli. OIM is revealed within the limits of concentration invariance where the memory test gives only sub-optimal performance for the concentration differences but discrimination of odor quality is not possible at all. Based on the available experimental tools, OIM seems to require the mushroom bodies the same as odor-quality memory but its properties are different. Flies can memorize the quality of several odorants at a given time but a newly formed memory of one odor interferes with the OIM stored before. In addition, the OIM lasts only 1 to 3 hours - much shorter than the odor-quality memory.},
  subject      = {Taufliege},
  language  = {en}
}
@phdthesis{Motsch2005,
  author    = {Motsch, Isabell},
  title     = {Lamin A and lamin C are differentially dysfunctional in autosomal dominant Emery-Dreifuss muscular dystrophy},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-15360},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2005},
  abstract  = {Emery-Dreifuss muscular dystrophy (EDMD) is a rare genetic disorder characterised by early contractures of the elbows, Achilles tendons and spine, slowly progressive muscle wasting and cardiomyopathy associated with cardiac conduction defect. The autosomal dominant form is caused by mutations in the LMNA gene which gives rise to lamin A and lamin C proteins by alternative splicing. These A-type lamins, together with B-type lamins, form the nuclear lamina, a network of intermediate filament proteins underlining the nuclear envelope. In order to ascertain the role lamin A and C separately contribute to the molecular phenotype, we analysed ten LMNA mutations and one single nucleotide polymorphism (SNP) in transfection studies in COS7 fibroblasts and, partially, in C2C12 myoblasts. The EGFP or DsRed2 tagged lamins were exogenously expressed either individually or both A-types together and examined by light and electron microscopy. The protein mobility of lamin A mutants was determined by FRAP analysis. Additionally, a co-immunoprecipitation binding assay of in vitro synthesised A-type lamins and emerin was performed.Eight of the LMNA mutations (R50S, R133P, E358K, E358K+C<T1698, E361K, R527P, L530P, R541S and G602S) and the SNP C<T1698, when expressed in lamin A, exhibited a range of nuclear mis-localisation patterns from a wild type phenotype to the formation of nuclear aggregates. Two mutations (T150P and delQ355) led to the severe mis-localisation of the exogenous protein and additionally affected nuclear envelope reassembly and mid-body protein composition after mitosis. Exogenously expressed DsRed2 tagged wild type and mutant lamin C was only inserted into the nuclear lamina if co-expressed with the equivalent EGFP tagged lamin A construct, except for the T150P mutation which prevented either lamin from reaching the nuclear lamina. The T150P, R527P and L530P mutations reduced the ability of lamin A, but not lamin C from binding to emerin. These data indicate that mutations in the rod domain of lamin A mainly impair its function as a structural protein, whereas mutations of the globular tail domain appear to disrupt protein-protein interactions important for gene regulation and signal transduction processes. In addition, our results suggest specific functional roles for the emerin-lamin A and emerin-lamin C containing protein complexes; this is the first report to propose that the A-type lamin mutations may be differentially dysfunctional for the same LMNA mutation.},
  subject      = {Muskeldystrophie},
  language  = {en}
}
@phdthesis{Schindelin2005,
  author    = {Schindelin, Johannes},
  title     = {The standard brain of Drosophila melanogaster and its automatic segmentation},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-15518},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2005},
  abstract  = {In this thesis, I introduce the Virtual Brain Protocol, which facilitates applications of the Standard Brain of Drosophila melanogaster. By providing reliable and extensible tools for the handling of neuroanatomical data, this protocol simplifies and organizes the recurring tasks involved in these applications. It is demonstrated that this protocol can also be used to generate average brains, i.e. to combine recordings of several brains with the same features such that the common features are emphasized. One of the most important steps of the Virtual Insect Protocol is the aligning of newly recorded data sets with the Standard Brain. After presenting methods commonly applied in a biological or medical context to align two different recordings, it is evaluated to what extent this alignment can be automated. To that end, existing Image Processing techniques are assessed. I demonstrate that these techniques do not satisfy the requirements needed to guarantee sensible alignments between two brains. Then, I analyze what needs to be taken into account in order to formulate an algorithm which satisfies the needs of the protocol. In the last chapter, I derive such an algorithm using methods from Information Theory, which bases the technique on a solid mathematical foundation. I show how Bayesian Inference can be applied to enhance the results further. It is demonstrated that this approach yields good results on very noisy images, detecting apparent boundaries between structures. The same approach can be extended to take additional knowledge into account, e.g. the relative position of the anatomical structures and their shape. It is shown how this extension can be utilized to segment a newly recorded brain automatically.},
  subject      = {Taufliege},
  language  = {en}
}
@phdthesis{Siddiki2005,
  author    = {Siddiki, Afif},
  title     = {Model calculations of current and density distributions in dissipative Hall bars},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-15100},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2005},
  abstract  = {In this work we examine within the self-consistent Thomas-Fermi-Poisson approach the low-temperature screening properties of a two-dimensional electron gas (2DEG) subjected to strong perpendicular magnetic fields. In chapter 3, numerical results for the unconfined 2DEG are compared with those for a simplified Hall-bar geometry realized by two different confinement models. It is shown that in the strongly nonlinear-screening limit of zero temperature the total variation of the screened potential is related by simple analytical expressions to the amplitude of an applied harmonic modulation potential and to the strength of the magnetic field. In chapter 4 we study the current and charge distribution in a two-dimensional electron system, under the conditions of the integer quantized Hall effect, on the basis of a quasilocal transport model, that includes nonlinear screening effects on the conductivity via the self-consistently calculated density profile. The existence of "incompressible strips" with integer Landau level filling factor is investigated within a Hartree-type approximation, and nonlocal effects on the conductivity along those strips are simulated by a suitable averaging procedure. This allows us to calculate the Hall and the longitudinal resistance as continuous functions of the magnetic field B, with plateaus of finite widths and the well-known, exactly quantized values. We emphasize the close relation between these plateaus and the existence of incompressible strips, and we show that for B values within these plateaus the potential variation across the Hall bar is very different from that for B values between adjacent plateaus, in agreement with recent experiments. We have improved on the previous chapter by a critical investigation of the impurity potential profiles and obtained reasonable estimates of the range and the amplitude of the potential fluctuations. We added a harmonic perturbation potential to the confining potential in order to generate the long-range-part of the overall impurity potential in the translation invariant model. This treatment of the long-range fluctuations allowed us to resolve apparent discrepancies such as the dependence of the QH plateau width on the mobility and to understand the crossing values of the high and low temperature Hall resistances. An interesting outcome of this model is that, it predicts different crossing values depending on the sample width and mobility. In chapter 6 we brie y report on theoretical and experimental investigations of a novel hysteresis effect that has been observed on the magneto-resistance (MR) of quantum-Hall (QH) bilayer systems in magnetic field (B) intervals, in which one layer is in a QH-plateau while the other is near an edge of a QH-plateau. We extend a recent approach to the QH effect, based on the Thomas-Fermi-Poisson theory and a local conductivity model to the bilayer system. This approach yields very different density and potential landscapes for the B-values at different edges of a QH plateau. Combining this with the knowledge about extremely long relaxation times to the thermodynamic equilibrium within the plateau regime, we simulate the hysteresis in the "active" current-carrying layer by freezing-in the electron density in the other, "passive", layer at the profile corresponding to the low-B edge of its QH plateau as B is swept up, and to the profile at the high-B edge as B is swept down. The calculated MR hysteresis is in good qualitative agreement with the experiment. If we use the equilibrium density profile, we obtain excellent agreement with an "equilibrium" measurement, in which the system was heated up to ~ 10K and cooled down again at each sweep step.},
  subject      = {Elektronengas},
  language  = {en}
}
@phdthesis{Dragota2005,
  author    = {Dragota, Simona Olimpia},
  title     = {Contributions to the chemistry of higher-coordinate Silicon : synthesis, structure, and stereodynamics of new Silicon(IV) complexes with SiO2N2C, SiO4C, or SiO6 skeletons},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-15304},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2005},
  abstract  = {This thesis contributes to the field of silicon chemistry, with a special emphasis on the chemistry of penta- and hexacoordinate silicon.The spirocyclic zwitterionic Lambda5Si-silicates 1-6 with a (2,2,6,6-tetramethylpiperidinio)- methyl group and two identical bidentate chelate ligands derived from glycine, (S)-alanine, (S)-phenylalanine, (S)-valine, (S)-tert-leucine, or (S)-proline bound to the silicon(IV) coordination center were synthesized and structurally characterized for the first time.The hitherto unknown spirocyclic zwitterionic Lambda5Si-silicates 7-12 with an (ammonio)- methyl group and two identical bidentate chelate ligands derived from (S)-lactic acid, (S)-3- phenyllactic acid, or (S)-mandelic acid were synthesized and structurally characterized in the solid state (elemental analyses (C, H, N), crystal structure analyses, 15N and 29Si VACP/MAS solid-state NMR experiments) and in solution (except 10; 1H, 13C, and 29Si NMR experiments)The spirocyclic zwitterionic Lambda5Si-silicates 13, 15, and 16 with an (ammonio)methyl group and two bidentate meso-oxolane-3,4-diolato(2-) ligands bound to the silicon(IV) coordination center were synthesized for the first time. The already existent compound 14 was resynthesized in order to perform a crystal structure analysis. All compounds were characterized by elemental analyses (C, H, N), 29Si VACP/MAS solid-state NMR experiments, and solution NMR studies (1H, 13C, 15N, and 29Si NMR experiments), and compounds 14-16 were additionally studied by single-crystal X-ray diffraction.The already existent zwitterionic Lambda5Si-silicate 17 was synthesized by new methods, including a remarkable Si-C cleavage reaction with benzoin. To investigate the dynamic behavior of the known zwitterionic Lambda5Si-silicate 18 in solution, VT 1H NMR experiments in CD2Cl2 were performed in the temperature range -100 °C to 23 °C.The hexacoordinate silicon compounds 19-22 containing multidentate ligands derived from citric acid or (S)-malic acid were synthesized for the first time. The anionic Lambda6Si-silicates 19-22 were structurally characterized in the solid state by single-crystal X-ray diffraction and VACP/MAS NMR spectroscopy (13C, 15N, 29Si). Upon dissolution in water at 20 °C, spontaneous hydrolysis of the Lambda6Si-silicate anions was observed.},
  subject      = {Silicate},
  language  = {en}
}
@phdthesis{Popp2005,
  author    = {Popp, Christian},
  title     = {Cuticular transport of hydrophilic molecules with special focus on primary metabolites and active ingredients},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-15174},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2005},
  abstract  = {The plant cuticle as an interface between the plant interior and the adjoining atmosphere plays an important role in any interaction between the plant and its environment. Transport processes across the cuticles were the object of countless research since many decades. However, bulk of the work done was focused on transport of lipophilic molecules. It is highly plausible to examine the penetration of lipophilic compounds, since the cuticle is dominated by lipophilic compartments itself, and the most crop protection agents have lipophilic character. As a result of this research, cuticular transport of lipophilic compounds is relatively well understood. Since several years, examinations were expanded on transport of hydrophilic molecules. In the present study, a direct comparison was made between transport properties of lipophilic and hydrophilic compounds, which allows an objective assessment of the mechanism governing their penetration. The results of this present study debunked the existence of two different pathways across isolated cuticles of Hedera helix (English ivy), a lipophilic and a hydrophilic pathway. This finding was supported by examinations regarding to accelerator and temperature effects on the mobility of both pathways, because the hydrophilic path is insensitive to them - in contrary to the lipophilic one. The lipophilic pathway is rigorously restricted to lipophilic molecules and the hydrophilic pathway is only accessible for hydrophilic molecules. Uncharged hydrophilic compounds can cross the cuticle even the molecules are of relatively large dimensions. In contrast to that, dissociable compounds with a molar volume higher than 110 cm³ mol-1 are excluded from cuticular penetration. Differences in the mobility of uncharged and dissociable molecules might be a hint towards the chemical nature of the polar pathways. It is assumed, that both, cellulose and pectin fibrils, traverse the cuticle which are originated from the epidermal cell wall. While uncharged carbohydrates might be able to penetrate across a pathway made up of cellulose and pectin, dissociated amino acids might be restricted to the cellulose path. This could be a plausible explanation for the higher mobility and the higher cuticle/water partition coefficients of the carbohydrates compared with the amino acids. A hydrophilic pathway was found with isolated grapevine cuticles, too. The apparent size selectivity of the hydrophilic pathway implies transport via narrow pores. From the present data, a mean pore radius of 0.31 nm (H. helix) or rather 0.34 nm (V. vinifera) was calculated. The absolute number of pores per cm² is 1.1 x 109 for H. helix and 3.3 x 109 for V. vinifera cuticles. This finding and the enlarged pore size distribution of grapevine cuticles might be an explanation for the transport of uncharged and dissociable hydrophilic compounds of higher molar volume like paraquat dichloride - in contrast to ivy membranes Wax extraction of ivy membranes uncovers additional pores, which explains the increased mobilities of the hydrophilic compounds across dewaxed membranes. From these extensive measurements it is very conspicuous, that the bulk of cuticular water transpiration occurs via the polar pathway. Since the work was focused on cuticular penetration of primary metabolites like amino acids and carbohydrates, a mechanistic explanation of leaching processes is obtained, simultaneously. In cuticular research, an inconsistent terminology regarding the transport path of the hydrophilic compounds was used. The term 'hydrophilic pathway' is definitely correct, since it makes no statement with regard to the shape of this path. In contrast to that, the terms 'polar pore' or 'aqueous pore' could imply that there is a tube or rather a water-filled tube traversing the cuticle. However - at this point of time - the imagination about the shape of this path is a pathway across interfibrilar gaps within polysaccharide strains. The proposed diameter of these interfibrilar gaps fits very well to the diameter determined in this study. Therefore, the imagination of a pore is not unfounded, but it is a very narrow pore, definitely. Additionally, this pathway is a very straight pathway which corresponds to this simplified imagination. An expanded study was done with paraquat dichloride, which was applied as aqueous droplets on grapevine cuticles. It is assumed that these model membranes reflect transport properties which are very close to that of relevant crops and weeds. The predominating parameter for paraquat penetration is the moisture, either originated from a relative humidity of at least 75\% or provided by added chemicals. There is a tendency for good suitability of hygroscopic additives. Increased paraquat penetration was also obtained by raised concentrations and removal of the cuticular waxes.},
  subject      = {Kutikula},
  language  = {en}
}
@phdthesis{Heck2005,
  author    = {Heck, Klaus},
  title     = {Wireless LAN performance studies in the context of 4G networks},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-14896},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2005},
  abstract  = {Wireless communication is nothing new. The first data transmissions based on electromagnetic waves have been successfully performed at the end of the 19th century. However, it took almost another century until the technology was ripe for mass market. The first mobile communication systems based on the transmission of digital data were introduced in the late 1980s. Within just a couple of years they have caused a revolution in the way people communicate. The number of cellular phones started to outnumber the fixed telephone lines in many countries and is still rising. New technologies in 3G systems, such as UMTS, allow higher data rates and support various kinds of multimedia services. Nevertheless, the end of the road in wireless communication is far from being reached. In the near future, the Internet and cellular phone systems are expected to be integrated to a new form of wireless system. Bandwidth requirements for a rich set of wireless services, e.g.\ video telephony, video streaming, online gaming, will be easily met. The transmission of voice data will just be another IP based service. On the other hand, building such a system is by far not an easy task. The problems in the development of the UMTS system showed the high complexity of wireless systems with support for bandwidth-hungry, IP-based services. But the technological challenges are just one difficulty. Telecommunication systems are planned on a world-wide basis, such that standard bodies, governments, institutions, hardware vendors, and service providers have to find agreements and compromises on a number of different topics. In this work, we provide the reader with a discussion of many of the topics involved in the planning of a Wireless LAN system that is capable of being integrated into the 4th generation mobile networks (4G) that is being discussed nowadays. Therefore, it has to be able to cope with interactive voice and video traffic while still offering high data rates for best effort traffic. Let us assume a scenario where a huge office complex is completely covered with Wireless LAN access points. Different antenna systems are applied in order to reduce the number of access points that are needed on the one hand, while optimizing the coverage on the other. No additional infrastructure is implemented. Our goal is to evaluate whether the Wireless LAN technology is capable of dealing with the various demands of such a scenario. First, each single access point has to be capable of supporting best-effort and Quality of Service (QoS) demanding applications simultaneously. The IT infrastructure in our scenario consists solely of Wireless LAN, such that it has to allow users surfing the Web, while others are involved in voice calls or video conferences. Then, there is the problem of overlapping cells. Users attached to one access point produce interference for others. However, the QoS support has to be maintained, which is not an easy task. Finally, there are nomadic users, which roam from one Wireless LAN cell to another even during a voice call. There are mechanisms in the standard that allow for mobility, but their capabilities for QoS support are yet to be studied. This shows the large number of unresolved issues when it comes to Wireless LAN in the context of 4G networks. In this work we want to tackle some of the problems.},
  subject      = {Drahtloses lokales Netz},
  language  = {en}
}
@phdthesis{Wagh2005,
  author    = {Wagh, Dhananjay Anil},
  title     = {"Bruchpilot" -molecular and functional characterization of a novel active zone protein at the Drosophila synapse},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-14989},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2005},
  abstract  = {Chemical neurotransmission is a complex process of central importance for nervous system function. It is thought to be mediated by the orchestration of hundreds of proteins for its successful execution. Several synaptic proteins have been shown to be relevant for neurotransmission and many of them are highly conserved during evolution- suggesting a universal mechanism for neurotransmission. This process has checkpoints at various places like, neurotransmitter uptake into the vesicles, relocation of the vesicles to the vicinity of calcium channels in order to facilitate Ca2+ induced release thereby modulating the fusion probability, formation of a fusion pore to release the neurotransmitter and finally reuptake of the vesicles by endocytosis. Each of these checkpoints has now become a special area of study and maintains its own importance for the understanding of the overall process. Ca2+ induced release occurs at specialized membrane structures at the synapse known as the active zones. These are highly ordered electron dense grids and are composed of several proteins which assist the synaptic vesicles in relocating in the vicinity of Ca2+ channels thereby increasing their fusion probability and then bringing about the vesicular fusion itself. All the protein modules needed for these processes are thought to be held in tight arrays at the active zones, and the functions of a few have been characterized so far at the vertebrate active zones. Our group is primarily interested in characterizing the molecular architecture of the Drosophila synapse. Due to its powerful genetics and well-established behavioural assays Drosophila is an excellent system to investigate neuronal functioning. Monoclonal antibodies (MABs) from a hybridoma library against Drosophila brain are routinely used to detect novel proteins in the brain in a reverse genetic approach. Upon identification of the protein its encoding genetic locus is characterized and a detailed investigation of its function is initiated. This approach has been particularly useful to detect synaptic proteins, which may go undetected in a forward genetic approach due to lack of an observable phenotype. Proteins like CSP, Synapsin and Sap47 have been identified and characterized using this approach so far. MAB nc82 has been one of the shortlisted antibodies from the same library and is widely used as a general neuropil marker due to the relative transparency of immunohistochemical whole mount staining obtained with this antibody. A careful observation of double stainings at the larval neuromuscular junctions with MAB nc82 and other pre and post-synaptic markers strongly suggested an active zone localization of the nc82 antigen. Synaptic architecture is well characterized in Drosophila at the ultrastructural level. However, molecular details for many synaptic components and especially for the active zone are almost entirely unknown. A possible localization at the active zone for the nc82 antigen served as the motivation to initiate its biochemical characterization and the identification of the encoding gene. In the present thesis it is shown by 2-D gel analysis and mass spectrometry that the nc82 antigen is a novel active zone protein encoded by a complex genetic locus on chromosome 2R. By RT-PCR exons from three open reading frames previously annotated as separate genes are demonstrated to give rise to a transcript of at least 5.5 kb. Northern blots produce a prominent signal of 11 kb and a weak signal of 2 kb. The protein encoded by the 5.5 kb transcript is highly conserved amongst insects and has at its N-terminus significant homology to the previously described vertebrate active zone protein ELKS/ERC/CAST. Bioinformatic analysis predicts coiled-coil domains spread all over the sequence and strongly suggest a function involved in organizing or maintaining the structure of the active zone. The large C-terminal region is highly conserved amongst the insects but has no clear homologues in veretebrates. For a functional analysis of this protein transgenic flies expressing RNAi constructs under the control of the Gal4 regulated enhancer UAS were kindly provided by the collaborating group of S.Sigrist (G\&\#1616;ttingen). A strong pan-neuronal knockdown of the nc82 antigen by transgenic RNAi expression leads to embryonic lethality. A relatively weaker RNAi expression results in behavioural deficits in adult flies including unstable flight and impaired walking behavior. Due to this peculiar phenotype as observed in the first knockdown studies the gene was named "bruchpilot" (brp) encoding the protein "Bruchpilot (BRP)" (German for crash pilot). A pan-neuronal as well as retina specific downregulation of this protein results in loss of ON and OFF transients in ERG recordings indicating dysfunctional synapses. Retina specific downregulation also shows severely impaired optomotor behaviour. Finally, at an ultrastructural level BRP downregulation seems to impair the formation of the characteristic T-shaped synaptic ribbons at the active zones without significantly altering the overall synaptic architecture (in collaboration with E.Asan). Vertebrate active zone protein Bassoon is known to be involved in attaching the synaptic ribbons to the active zones as an adapter between active zone proteins RIBEYE and ERC/CAST. A mutation in Bassoon results in a floating synaptic ribbon phenotype. No protein homologous to Bassoon has been observed in Drosophila. BRP downregulation also results in absence of attached synaptic ribbons at the active zones. This invites the speculation of an adapter like function for BRP in Drosophila. However, while Bassoon mutant mice are viable, BRP deficit in addition to the structural phenotype also results in severe behavioural and physiological anomalies and even stronger downregulation causes embryonic lethality. This therefore suggests an additional and even more important role for BRP in development and normal functioning of synapses in Drosophila and also in other insects. However, how BRP regulates synaptic transmission and which other proteins are involved in this BRP dependant pathway remains to be investigated. Such studies certainly will attract prominent attention in the future.},
  subject      = {Taufliege},
  language  = {en}
}
@phdthesis{Schwenkert2005,
  author    = {Schwenkert, Isabell},
  title     = {Phenotypic characterization of hangover at the neuromuscular junction},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-14977},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2005},
  abstract  = {Ethanoltoleranz beruht vermutlich auf Ver{\"a}nderung in synaptischer Plastizit{\"a}t; da die Mechanismen, die zu dieser Anpassung der Synapsen f{\"u}hren, in hang-Mutanten offensichtlich defekt sind, war es Ziel dieser Arbeit zu erkl{\"a}ren, wie HANG zu synaptischer Plastizit{\"a}t beitr{\"a}gt. In diesem Zusammenhang war es besonders wichtig herauszufinden, in welchem neuronalen Prozeß HANG eine Rolle spielt. Antik{\"o}rperfarbungen gegen HANG zeigten, da das Protein in allen neuronalen Zellkernen larvaler und adulter Gehirne vorhanden ist. Gehirne der hangAE10 Mutante zeigen keine F{\"a}rbung, was best{\"a}tigt, da diese Tiere Nullmutanten f{\"u}r HANG sind. Eine genauere Analyse der Verteilung von HANG im Zellkern ergab, daß HANG in einem punktartigen Muster an bestimmten Stellen im Kern angereichert ist; diese HANG-Aggregate sind an der Innenseite der Kernmembran lokalisiert und colokalisieren nicht mit dem Chromatin. Auf der Basis dieser Ergebnissen wurde postuliert, daß HANG vermutlich an der Stabilisierung, Prozessierung oder dem Export von mRNAs beteiligt ist. Da synaptische Plastizit{\"a}t gut an den einzelnen Neuronen der neuromuskul{\"a}ren Synapse von Drosophila-Larven studiert werden kann, wurde die Morphologie der Motorneurone dritter Larven am Muskelpaar 6/7 des Segments A4 untersucht. Diese Untersuchungen zeigten, da Boutonanzahl und Axonl{\"a}nge in hangAE10-Larven um 40 \% erh{\"o}ht sind. Außerdem zeigen einige Boutons der hang-Mutanten eine abnormale, sanduhrf{\"o}rmige Form, was darauf hinweist, daß sie nach Initiation der Bouton-Teilung m{\"o}glicherweise in einem halb-separierten Zustand geblieben sind. Die Zunahme an Boutons in den Mutanten ist im wesentlichen auf eine Zunahme der Anzahl der Typ Ib-Boutons zur{\"u}ckzuf{\"u}hren. Die Analyse der Verteilung verschiedener synaptischer Marker in hangover-Mutanten ergab keine Hinweise auf Abnormalit{\"a}ten im Zytoskelett oder in der Ausbildung der pr{\"a}-und postsynaptischen Strukturen. Des weiteren ist die Anzahl der aktiven Zonen relativ zur Boutonoberfl{\"a}che nicht ver{\"a}ndert; da hang-Mutanten aber mehr synaptische Boutons pro synaptischem Terminal besitzen, kann man insgesamt von einer Zunahme der Anzahl der aktiven Zonen ausgehen. Die pr{\"a}synaptische Expression von HANG in den Mutanten rettet die erh{\"o}hte Boutonanzahl und die verl{\"a}ngerten Axone, was ebenfalls beweist, daß die beobachteten synaptischen Defekte auf das Fehlen von HANG und nicht auf Sekund{\"a}rmutationen zur{\"u}ckzuf{\"u}hren sind. Eine postsynaptische Expression der hangover cDNA in den Mutanten dagegen rettet den Ph{\"a}notyp nicht. Die Anzahl der synaptischen Boutons wird unter anderem durch cAMP-Levels bestimmt, welche somit synaptische Plastizit{\"a}t regeln. Da hang-Mutanten eine erh{\"o}hte Boutonanzahl aufweisen, f{\"u}hrte dies zu der Spekulation, daß der Ph{\"a}notyp dieser Mutanten m{\"o}glicherweise auf ver{\"a}nderte cAMPlevels zur{\"u}ckzuf{\"u}hren ist. Um dies zu {\"u}berpr{\"u}fen, wurde die Morphologie der neuromuskul{\"a}ren Synapsen von hangAE10-Larven mit denen von dnc1 verglichen, welche Defekte in der cAMP-Kaskade aufweisen. Einige Aspekte des Ph{\"a}notyps (z. B. die Zunahme der Boutonanzahl und das Verhaltnis von aktiven Zonen pro Boutonfl{\"a}che) sind sehr ¨ahnlich; jedoch unterscheiden sich die beiden Mutanten in anderen morphologischen Aspekten. Die Expression eines UAS-dnc-Transgens in hangover-Mutanten modifizierte den hang-Ph{\"a}notyp ebenfalls nicht. Auf der Basis der Ergebnisse dieser Arbeit wurde ein Modell f{\"u}r die Funktion von HANG erstellt, nach dem dieses Protein vermutlich am Isoform-spezifischen Spleißen bestimmter Transkripte beteiligt ist, deren Produkte f{\"u}r die synaptische Plastizit{\"a}t an der neuromuskul{\"a}ren Synapse ben{\"o}tigt werden.},
  subject      = {Taufliege},
  language  = {en}
}
@phdthesis{Epstude2005,
  author    = {Epstude, Kai},
  title     = {What you get is what you see? Comparisons influence the social induction of affect},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-14961},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2005},
  abstract  = {The present research is concerned with the topic of socially induced affect. In previous research the focus was mainly on affective convergence. A prominent topic in that context was "emotional contagion" (Hatfield, Cacioppo, \& Rapson, 1994). Affective divergence has been also been found. However, its influence on the theoretical debate remained weak. Besides research on emotions also social comparison research attended to the topic. In order to explain affective divergence and convergence an integrative model based on social comparison processes is proposed here. Based on the selective accessibility model (Mussweiler, 2003) it is assumed that affective convergence can be seen as assimilation to a comparison standard (the observed model). Therefore, the basic assumption is that a comparison between an observer and the model takes place. Affective divergence corresponds to an affective contrast from that standard. Which of these two phenomena occurs depends on the type of comparison processes that took place. Six experiments were conducted. In Experiment 1 it was shown that comparisons intensify the social induction of affect. The influence of the comparison focus was studied in Experiments 2 and 3. If the perceiver searches for similarities between the self and the model, affective convergence occurs. If differences are searched for, affective divergence is found. The latter is mainly found under special circumstances, e.g. if the model belongs to another social group (Experiment 3). In Experiment 1-3 it was shown comparisons influence the social induction of affect. In Experiment 4-6 the underlying processes were explored. The selective accessibility model (Mussweiler, 2003) attributes a central role to the selective activation of self-knowledge in order to explain judgmental assimilation and contrast. In Experiments 4 and 5 the role of the self was explored more thoroughly. Evidence for socially induced affect (affective convergence) has only been found when the self has been previously activated. When the self was not activated no such effect was found. The assumption that the activation of specific self-knowledge is the basis for socially induced affect was tested in Experiment 5. Results supported the assumption. The present experiments give rise to the assumption that social comparisons are a key element in the social induction of affect. Affective convergence and divergence are explained and processes for the affect induction are defined. The findings also have implications for research on automatic behaviour and especially to explain automatic contrast. In addition implications for social comparison research can be derived.},
  language  = {en}
}
@phdthesis{Schmidt2004,
  author    = {Schmidt, Robert},
  title     = {The behavioral economics of foreign exchange markets - a psychological view on human expectation formation in foreign exchange markets},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-14921},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2004},
  abstract  = {The development of free floating exchange rates can hardly be explained by macroeconomic fundamentals as supposed by traditional economic theories. Therefore, prominent economists yet conclude that there exists an 'exchange rate disconnect puzzle' (see Obstfeld and Rogoff [2000]). The observable exchange rate trends are often attributed to an excessive speculative trading behavior of foreign exchange market participants. In this study we deal with psychological factors, which may be important for understanding the observable exchange rate movements. Thus, our study belongs to the new research field of behavioral economics, which considers the relevance of psychological factors in economic contexts. The main objective of behavioral economists is to develop a more realistic view of the actual human behavior in the context of economics. Therefore, behavioral economists often refer to the work of behavioral decision theorists, who introduced new concepts under the general heading of bounded rationality. Central to the concept of bounded rationality is the assumption that humans' actual behavior deviates from the ideal of economic rationality due to at least two reasons: first, decisions are usually based on an incomplete information basis (limited information) and, second, the information processing of human beings is limited by their computational capacities (limited cognitive resources). Due to these limitations people are forced to apply simplification mechanisms in information processing. Important simplification mechanisms, which play a decisive role in the process judgment and decision making, are simple heuristics. Simple heuristics can principally be characterized as simple rules of thumb, which allow quick and efficient decisions even under a high degree of uncertainty. In this study, our aim is to analyze the relevance of simple heuristics in the context of foreign exchange markets. In our view, the decision situation in foreign exchange markets can serve as a prime example for decision situations in which simple heuristics are especially relevant as the complexity of the decision situation is very high. The study is organized as follows. In Chapter II, we deal with the exchange rate disconnect puzzle. In particular, we discuss and check the main implications of the traditional economic approach for explaining exchange rate movements. The asset market theory of exchange rate determination implies that exchange rates are mainly driven by the development of macroeconomic fundamentals. Furthermore the asset market theory assumes that foreign exchange market participants form rational expectations concerning future exchange rate developments and that exchange rates are determined in efficient markets. Overall the empirical evidence suggests that the traditional approach for explaining exchange rate changes is at odds with the data. Chapter III addresses the existence of long and persistent trends in exchange rate time series. Overall, our empirical analysis reveals that exchange rates show a clear tendency to move in long and persistent trends. Furthermore, we discuss the relevance of speculation in foreign exchange markets. With regard to the impact of speculation, economic theory states that speculation can have either a stabilizing effect or a destabilizing effect on exchange rates. At the end of Chapter III, we examine the Keynesian view on the functioning of asset markets. In Chapter IV we explore the main insights from the new research field of behavioral economics. A main building block of behavioral economics is the concept of bounded rationality first introduced by Herbert Simon [1955]. In the centre of the concept of bounded rationality is a psychological analysis of the actual human judgment and decision behavior. In Chapter IV, we discuss the concept of bounded rationality in detail and illustrate important insights of behavioral decision theories. In particular, we deal with the relevance of simple heuristics in the context of foreign exchange markets. Chapter V provides experimental and empirical evidence for the suggested relevance of simple heuristics in foreign exchange markets. In the first experiment, we deal with the human expectation formation. We compare point forecasts of the EUR/USD exchange rate surveyed from professional analysts and experimentally generated point forecasts of students for a simulated exchange rate time series. The results show that the forecasting performance of both groups differs substantially. Afterwards we analyze the nature of expectation formation of both groups in detail to reveal similarities and differences, which allow us to draw reasonable explanations for the differences in the forecasting performances. In the second experiment, we analyze the expectation formation in an experimental foreign exchange market. This approach allows us to consider the relevance of expectation feedback as individuals' expectations directly influence the actual realization of the time series. Thus, Keynes' predictions on the importance of conventions in asset markets can be analyzed. Overall, both experiments reveal that the human beings tend to apply simple trend heuristics, when forming their expectations about future exchange rates. In the empirical part of Chapter V we deal with the usefulness of such simple trend heuristics in real world. Only if simple trend heuristics lead to profits in the specific environment of foreign exchange markets, their application can be recommended. Thus, we analyze the profitability of simple technical analysis tools in foreign exchange markets. Finally, Chapter VI provides concluding remarks.},
  subject      = {Devisenmarkt},
  language  = {en}
}
@phdthesis{Proels2004,
  author    = {Pr{\"o}ls, Reinhard},
  title     = {Regulation and function of extracellular invertases of tomato},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-10260},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2004},
  abstract  = {Wachstum und Entwicklung pflanzlicher Gewebe bedingen eine fortw{\"a}hrende Ver{\"a}nderung von Source-Sink Beziehungen. Gewebe mit einem Nettoexport (Source) oder - import (Sink) von Kohlenhydraten m{\"u}ssen ihren aktuellen Bedarf an Assimilaten entsprechend dem Entwicklungsstadium anpassen. Dar{\"u}ber hinaus haben Pflanzen als ortsgebundene Lebewesen Regulationsmechanismen entwickelt, die eine flexible Antwort der Assimilatverteilung auf spezielle Anforderungen des Habitats, wie biotische oder abiotische Stressfaktoren und wechselnde Lichtbedingungen, erm{\"o}glichen. Die Assimilatverteilung ist vielf{\"a}ltig reguliert und erfordert spezifische Enzymfunktionen, wie Zuckertransporter und saccharosespaltende Enzyme. Extrazellul{\"a}re Invertasen nehmen eine essentielle Funktion in der apoplastischen Phloementladung und in der Regulation von Source-Sink {\"U}berg{\"a}ngen ein. Dies spiegelt sich in dem Auftreten verschiedener Invertase- Isoenzyme mit speziellen Expressions- und Regulationsmustern wider, welche eine Koordination des Kohlenhydratmetabolismus in unterschiedlichen Geweben, zu unterschiedlichen Entwicklungsstufen und unter sich {\"a}ndernden Umweltbedingungen erm{\"o}glichen. Ein detailliertes Wissen {\"u}ber die Funktion extrazellul{\"a}rer Invertasen k{\"o}nnte eingesetzt werden, um Wachstum, Entwicklung oder Pathogenresisitenz von Nutzpflanzen gezielt zu ver{\"a}ndern. In der vorliegenden Studie wurden die Regulationsmuster und die Funktion dreier extrazellul{\"a}rer Invertasen aus Tomate, Lin5, Lin6 und Lin7 untersucht. Durch umfangreiche Promotorstudien konnte eine gewebe- und entwicklungsspezifische Expression dieser Isoenzyme und entsprechende Regulationsmuster offengelegt werden. Lin5 zeigt eine entwicklungsabh{\"a}ngige Expression in Fr{\"u}chten. Lin6 wird in fr{\"u}hen Entwicklungsstadien, beginnend mit der Samenkeimung, exprimiert; in ausgewachsenen Pflanzen ist eine Lin6 Expression nur in Pollen oder nach Verwundungsinduktion nachweisbar. Lin7 wird ausschließlich in Tapetum-Gewebe und Pollen exprimiert. Die hormonelle Regulation der Isogene wurde im Detail untersucht, hierbei konnten bekannte Ph{\"a}notypen, welche durch Gibberellins{\"a}ure und Jasmonate bedingt werden, mit Invertasefunktionen in Korrelation gebracht werden. Dar{\"u}ber hinaus konnte in einem funktionalen Ansatz gezeigt werden, dass Lin7 eine wichtige Rolle in der Pollenkeimung zukommt. Die vorliegende Arbeit stellt die umfassendste Untersuchung extrazellul{\"a}rer Invertasen w{\"a}hrend der Bl{\"u}tenentwicklung dar, an der drei Isoenzyme aus Tomate beteiligt sind. Dadurch, dass den einzelnen Invertasen Lin5, Lin6 und Lin7 individuelle Funktionen zugewiesen werden konnten, er{\"o}ffnen sich neue Erkenntnisse {\"u}ber die Kohlenhydratversorgung w{\"a}hrend der Bl{\"u}ten- und Fruchtentwicklung. F{\"u}r die untersuchten gewebespezifischen Promotoren er{\"o}ffnen sich zudem Anwendungsm{\"o}glichkeiten in der Biotechnologie, was insbesondere f{\"u}r den pollenspezifischen Lin7 Promotor zutrifft. Es konnte gezeigt werden, dass der Lin6 Promotor das Ziel von hormon-, zucker- und verwundungsvermittelten Signalwegen ist. Dar{\"u}ber hinaus konnte nachgewiesen werden, dass Elemente des circadianen Oszillators von A. thaliana mit dem Lin6 Promotor funktionell interagieren und die Lin6 Expression einem diurnalen Rhythmus unterliegt. Dieses komplexe Regulationsmuster spiegelt sich in vielen cis-aktiven Elementen wider, die im Lin6 Promotor vorgefunden wurden. Durch dieses Merkmal wird die These gest{\"u}tzt, dass verschiedene Stimuli {\"u}ber die extrazellul{\"a}re Invertase integriert werden und so eine koordinierte Zellantwort auf sich {\"a}ndernde interne und externe Bedingungen erm{\"o}glicht wird. Nachdem Zuckermolek{\"u}le ihrerseits die Expression von Lin6 induzieren, wird dadurch eine Amplifikation von Signalen {\"u}ber eine positive R{\"u}ckkopplungsschleife erm{\"o}glicht. Die Vielzahl an cis-aktiven Elementen und deren Anordnung im Lin6 Promotor stellen ein ideales Modellsystem dar, um Fragen in Bezug auf Signalinteraktion und -integration zu untersuchen. In einer umfangreichen Studie wurde der Lin6 Promotor erfolgreich als induzierbares Expressionssystem eingesetzt. Hierbei wurde ein Invertaseinhibitor unter der Kontrolle des cytokinininduzierbaren Lin6 Promotors in transgenen Tabakpflanzen exprimiert. Mit diesem Ansatz ist es gelungen einen kausalen Zusammenhang zwischen dem Hormon Cytokinin und extrazellul{\"a}ren Invertasen in der Seneszenzverz{\"o}gerung herzustellen. Diese Studie zeigt, dass induzierbare Expressionssysteme essentiell sind, um spezifische Fragestellungen auf molekularer Ebene kl{\"a}ren zu k{\"o}nnen. Bei der Klonierung obig genannter Promotorsequenzen haben sich zudem zwei interessante strukturelle Besonderheiten ergeben. Zum einen sind die Gene von Lin5 und Lin7 in einem Tandem auf dem Genom angeordnet, zum anderen konnte eine Transposoninsertion im Intron I des Lin5 Gens gezeigt werden. Mit einem Primerpaar, das aus der Transposaseregion dieses Transposons abgeleitet wurde, konnten entsprechende Sequenzen von mehreren Solanaceae Spezies gewonnen werden.},
  subject      = {Tomate},
  language  = {en}
}
@phdthesis{Eichelberger2005,
  author    = {Eichelberger, Holger},
  title     = {Aesthetics and automatic layout of UML class diagrams},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-14831},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2005},
  abstract  = {In the last years, visual methods have been introduced in industrial software production and teaching of software engineering. In particular, the international standardization of a graphical software engineering language, the Unified Modeling Language (UML) was a reason for this tendency. Unfortunately, various problems exist in concrete realizations of tools, e.g. due to a missing compliance to the standard. One problem is the automatic layout, which is required for a consistent automatic software design. The thesis derives reasons and criteria for an automatic layout method, which produces drawings of UML class diagrams according to the UML specification and issues of human computer interaction, e.g. readability. A unique set of aesthetic criteria is combined from four different disciplines involved in this topic. Based on these aethetic rules, a hierarchical layout algorithm is developed, analyzed, measured by specialized measuring techniques and compared to related work. Then, the realization of the algorithm as a Java framework is given as an architectural description. Finally, adaptions to anticipated future changes of the UML, improvements of the framework and example drawings of the implementation are given.},
  subject      = {URL},
  language  = {en}
}
@phdthesis{Wagener2005,
  author    = {Wagener, Annika},
  title     = {The NoGo-anteriorization and its relation to a central inhibitory mechanism},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-14799},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2005},
  abstract  = {The maximum of the brain electrical field after NoGo stimuli is located more anteriorly than that after stimuli that tells participants to respond. The difference in topography was called NoGo-Anteriorization (NGA). Recently, there was a debate, whether the NGA is related to a central inhibitory process or not. However, experiments showed that the NGA is not the result of motor potentials during Go trials, the NGA does not represent higher response conflict and or higher mental effort in NoGo trials, and the NGA is not based on less cognitive response selection in NoGo trials. Therefore, the experiments support the assumption that the NGA is connected to an inhibitory mechanism in NoGo conditions.},
  subject      = {Handlung},
  language  = {en}
}
@phdthesis{Allgaier2004,
  author    = {Allgaier, Axel},
  title     = {Aeolian sand movement in an arid linear dune ecosystem, Nizzana, Western Negev, Israel},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-14727},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2004},
  abstract  = {In a three-year study the current aeolian transportation processes were examined in a linear dune area previously used for grazing near Nizzana at the Israeli-Egyptian border. The research area was subject to heavy grazing across the border, which led to the total destruction of the natural vegetation in the period of 1967 to 1982. As a consequence, intensified aeolian activity and significant changes of the morphology of the dunes were observed. After the end of the grazingg on the Israeli side, a rapid return of the vegetation in the interdune corridors and on the footslopes of the dunes took place. In addition also a reduction of obviously active areas on the dune crests was observed. The situation on Egyptian territory west the border remained unchanged until today. This study is aimed at understanding the changed aeolian morphodynamics east the border. The emphasis was placed on the investigation of the spatial and temporal distribution of aeolian sand transport as well as on the influencing factors morphology, surface condition and vegetation.},
  subject      = {Negev},
  language  = {en}
}
@phdthesis{Schneider2005,
  author    = {Schneider, Gy{\"o}rgy},
  title     = {Studies on the architecture and on transferability of pathogenicity islands of uropathogenic Escherichia coli strain 536},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-14231},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2005},
  abstract  = {The establishment of genomic approaches including the sequence determination of complete bacterial genomes started a new era in microbiological research. Since then more than two hundred prokaryotic and eukaryotic genomes have been completely sequenced, and there are additional complete genome projects including different bacterial species and strains in progress (http://www.tigr.org, http://www.sanger.ac.uk). The continously growing amount of bacterial DNA sequence information gives us also the possibility to gain deeper insight into bacterial pathogenesis. With the help of comparative genomics, microbiological research can focus on those DNA sequences that are present in pathogenic bacteria but are absent in non-pathogenic strains. With this knowledge and with the help of molecular biological methods such as PCR,DNA-chip technology, subtractive hybridisation, transcriptomics and proteomics we can analyse in detail what makes a particular bacterial strain pathogenic. This knowledge also gives us the possibility to develop new vaccines, therapeutic approaches or diagnostic tools. The aim of this work was the structural and functional analysis of DNA regions of uropathogenic Escherichia coli strain 536 that belong to the flexible E. coli gene pool. The first part of this thesis focused on the identification and structural characterisation of pathogenicity island V of strain 536 (PAI V536). PAI V536 is integrated at the pheV tRNA gene at 64 minutes of the E. coli K-12 chromosome. In addition to the intact pheV tRNA gene, a truncated copy ('pheV) that represents the last 22 bp of this gene's 3'-end was identified 49 kb downstream of pheV on PAI V536. The analysis of the DNA sequence flanked by pheV and 'pheV revealed characteristics that are typical of PAIs. This DNA region exhibits homology to IS-elements and prophages and also comprises determinants coding for the Pix fimbriae, a phosphoglycerate transport system, an autotransporter, as well as for hypothetical proteins. Downstream of 'pheV, the K15 capsule determinant (kpsK15) of this strain is located. Structural analysis of the 20-kb kpsK15 locus revealed a so far unknown genetic organisation indicative of recombination events between a group 2 and group 3 capsule gene cluster. Downstream of the capsule determinant, the genes encoding a type II secretion system (general secretion pathway -GSP) are located on PAI V536. The K15 capsule locus was functionally characterized. Specific inactivation of each of the regions 1 to 3 of the kpsK15 gene cluster, and the use of a K15 capsule-specific antiserum demonstrated that this determinant is the functional K15 capsule locus of strain 536. It has been shown in an experimental murine model of ascending urinary tract infection with suckling mice that the K15 capsule contributes to urovirulence. Interestingly, the K15 capsule is not involved in serum resistance of strain 536. Inactivation of the PAI V536-encoded type II secretion system excluded a role of this general secretion pathway for capsule biosynthesis and virulence of strain 536 in the murine ascending urinary tract infection model. In the second part of the thesis, the transferability of PAIs was further investigated. Using PAI II536 as a model, mobilisation of this island from strain 536 into suitable recipient strains was investigated. For this purpose, an antibiotic resistance cassette, the R6K origin of replication as well as plasmid pGP704 carrying the mobilisation region of plasmid RP4 have been inserted into PAI II536. Transformation with the helper plasmid RP4, resulted a derivative of strain 536 that was used as a donor for conjugation experiments, while for recipient the pir + laboratory strain SY327 was used. After deletion the circularised PAI II536 was mobilised with the help of the conjugative helper plasmid (RP4) into the recipient laboratory strain SY327. The frequency of this event was about 10-8. It was also demonstrated that in the transconjugant strains the mobilized PAI II536 could be permanently present as a circular form and also can be integrated into the chromosome at the same chromosomal insertion site (leuX) as in the donor strain 536. Furthermore, after mobilisation and chromosomal integration of PAI II536 it was possible to remobilise this PAI back to a PAI II536-negative derivative of strain 536. The results obtained in this thesis increase our knowledge of the structure and function of a pathogenicity island of uropathogenic E. coli strain 536 and shed some light on the mechanisms contributing to genome plasticity and evolution of pathogenic E. coli variants.},
  subject      = {Escherichia coli},
  language  = {en}
}
@phdthesis{Bundschu2005,
  author    = {Bundschu, Karin},
  title     = {Generation and characterization of spred-2 knockout mice},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-14333},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2005},
  abstract  = {Spreds are a new Sprouty-related family of membrane-associated proteins inhibiting the MAPK signaling pathway by interacting with Ras and Raf-1. Different studies have already demonstrated the inhibitory function of Spreds in cell culture systems, but the in vivo function of Spreds in the whole organism was still unclear. Therefore, Spred-2 knockout mice were generated using a gene trap approach. The Spred-2 deficiency was verified on RNA and protein levels and the lack of functional Spred-2 protein in mice caused a dwarf phenotype similar to achondroplasia, the most common form of human dwarfism. Spred-2-/- mice showed reduced growth and body weight, they had a shorter tibia length and showed narrower growth plates as compared to wildtype mice. Spred-2 promoter activity and protein expression were detected in chondrocytes, suggesting an important function of Spred-2 in chondrocytes and bone development. Furthermore, stimulation of chondrocytes with different FGF concentrations showed earlier and augmented ERK phosphorylation in Spred-2-/- chondrocytes as compared to Spred-2+/+ chondrocytes. These observations suggest a model, in which loss of Spred-2 inhibits bone growth by inhibiting chondrocyte differentiation through upregulation of the MAPK signaling pathway. An additional observation of Spred-2-/- mice was an increased bleeding phenotype after injuries, whereas the bleeding volume was extremely enlarged and the bleeding time was significantly prolonged. So far, hypertension as cause could be excluded, but to discover the physiological reasons for this phenotype, the different steps of the clotting cascade have to be investigated further. As the Spred-2 promoter activity studies demonstrated a high and specific Spred-2 expression in vascular smooth muscle cells and previous studies showed an interaction of Spreds with RhoA, a key regulator of vascular smooth muscle contraction, the regulation of smooth muscle contractility seems to be a good candidate of this phenomenon. Moreover, Spred-1 and Spred-2 specific antibodies were generated as important tools to study the protein expression patterns in mice. Furthermore, nothing was known about the Spred-2 promoter region and its regulation. Here, a detailed in situ analysis of the physiological promoter activity profile in the gene trapped Spred-2-deficient mouse strain was shown. In these mice, the beta-galactosidase and neomycin fusion gene (\&\#946;-geo) of the gene trap vector was brought under control of the endogenous Spred-2 promoter, giving the opportunity to monitor Spred-2 promoter activity in practically every organ and their corresponding sub-compartments. X-Gal staining of sections of newborn and adult mice revealed 1) a very high Spred-2 promoter activity in neural tissues and different glands; 2) a high activity in intestinal and uterine smooth muscle cells, and kidney; 3) a low activity in heart, testis, lung, and liver; 4) an almost lacking activity in skeletal muscle and spleen, and 5) very interestingly, a very distinct and strong activity in vascular smooth muscle cells. Moreover, comparison of newborn and adult mouse organs revealed a nearly congruent Spred-2 promoter activity. These detailed data provide valuable information for further studies of the physiological functions of Spred-2 in organs showing strong Spred-2 promoter activity, which are in most of these organs still unclear. Finally, gene targeting vectors for Spred-1 and Spred-2 were cloned, to generate ES cells with a floxed exon 2 of the Spred-1 and Spred-2 gene, respectively. Now, these ES cells are valuable tools to establish conditional knockout mice. This is of major interest to investigate the physiological tissue specific functions of Spred-1 and Spred-2, especially if the double knockout mice are not viable.},
  subject      = {Spred Protein},
  language  = {en}
}
@phdthesis{ElMasri2005,
  author    = {El-Masri, Harun},
  title     = {A genetic analysis of somitogenesis in the Medaka (Oryzias latipes)},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-14515},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2005},
  abstract  = {Somites are repeated epithelial segments that are generated in a rhythmic manner from the presomitic mesoderm (PSM) in the embryonic tailbud. Later, they differentiate into skeletal muscle, cartilage and dermis. Somitogenesis is regulated by a complex interplay of different pathways. Notch/Delta signaling is one of the pathways well characterized in zebrafish through mutants affected in its different components. Previous work in mouse, chicken and zebrafish has shown that also additional components are required during somitogenesis, most importantly through an FGF and Retinoic acid (RA) gradient, as well as Wnt signaling. However, no zebrafish mutants with defects in these pathways showing specific somite malformations are described. This was explained by functional redundancies among related genes that have resulted from a whole genome duplication which occurred in a teleost fish ancestor 350 million years ago. As distinct duplicates exist in different teleost species, a large scale mutagenesis screen in the medaka (Oryzias latipes) has been performed successfully in Kyoto, Japan. I analyzed nine of the isolated medaka mutants that show variable aspects of somitic phenotypes. This includes a complete or partial loss of somite boundaries (e.g. bms and sne), somites with irregular sizes and shapes (e.g. krz and fsl) or partially fused and enlarged somites (e.g. dpk). Although some of these medaka mutants share characteristics with previously described zebrafish somite mutants, most of the mutants represent unique phenotypes, not obtained in the zebrafish screens. In-situ hybridization analyses with marker genes implicated in the segmentation clock (e.g. her7), establishment of anterior-posterior (A-P) polarity (e.g. mesp) and differentiation of somites (e.g. myf5, lfng) revealed that the medaka mutants can be separated into two classes. Class I shows defects in tailbud formation and PSM prepatterning, and lateron somite boundary formation was impaired in these mutants. A unique member of this class with a novel phenotype is the doppelkorn (dpk) mutant that has single fused or enlarged somites. This phenotype has not been reported till now in zebrafish somite mutants. In-situ analyses on dpk showed that stabilization of the cyclically expressed somitogenesis clock genes must be affected in this mutant. This is accompanied by a disrupted regulation of A-P polarity genes like mesp. This suggests that dpk is a mutant deficient in the wave front, which is necessary for the down-regulation of oscillating genes in the anterior PSM. Furthermore, as the initiation of oscillation of all three cyclic her genes was unaffected in dpk embryos, I could exclude that this mutant in affected in the Notch/Delta pathway. Another mutant that belongs to this class is the samidare (sam) mutant. Morphologically, sam mutants are similar to zebrafish after eight (aei). In both cases, the first 7-9 somites are formed properly, but after this somite formation ceases. Different to the situation in aei, sam mutant embryos presented an additional defect in the mid-hindbrain boundary (MHB) region. Similar MHB defects were described in the zebrafish fgf8 mutant acerebellar (ace). In ace zebrafish mutant, somites were only slightly defective, although FGF signaling has been shown to be important for somite formation in chicken, mouse and zebrafish. This was explained by functional redundancy between fgf8 and fgf24 ligands in the tailbud of zebrafish. Thus, it is interesting to suggest that the sam mutant, based on the parallel defects in somites and MHB, is a potential member of the FGF signaling pathway muatnts. It was shown that FGF plays a crucial role during MHB formation in medaka. In addition, I showed that fgf8 acts non-redundantly during tailbud formation and somitogenesis in medaka. Furthermore, I showed that FGF signaling regulates somite size also in medaka and that fgfr1 is the only FGF receptor expressed in the tailbud and somites. In class II medaka somite mutants, PSM prepatterning appears normal, whereas A-P polarity, boundary formation, epithelialization or the later differentiation of somites appears to be affected. Such mutants have not been isolated so far in zebrafish, mice or chicken. Therefore, medaka class II somite mutants seem to be a novel group of mutants that opens new perspectives to analyze A-P polarity regulation, determination and boundary formation in the presence of a normally functioning clock in the PSM. Identifying the encoding genes for all analyzed medaka somite mutants will contribute to the understanding of the molecular interactions of different signaling pathways involved during somitogenesis, and is expected to result in the identification of new components.},
  subject      = {Japank{\"a}rpfling},
  language  = {en}
}
@phdthesis{DjoukaFonkwe2005,
  author    = {Djouka-Fonkw{\´e}, Merline Laure},
  title     = {Association of S-type and I-type granitoids in the Neoproterozoic Cameroon orogenic belt, Bafoussam area, West Cameroon : geology, geochemistry and petrogenesis},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-14526},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2005},
  abstract  = {The Bafoussam area in west Cameroon is located within the Cameroon Neoproterozoic orogenic belt (north of the Congo craton) which is part of the Central African Fold Belt (CAFB).The evolution of the CAFB is related to the collision between the convergent West African craton, the S{\~a}o Francisco - Congo cratons and the Sahara Metacraton. The outcrop area stretches over a surface of ~1000 km2 and dominantly consists of granitoids which intruded wall-rocks of gneiss and migmatite during the Pan-African orogeny. The Bafoussam granitoid emplacement was influenced by the N 30 °E strike-slip shear zone in the prolongation of the Cameroon Volcanic Line, but also by the N 70 °E Central Cameroon Shear Zone. In the field, these two shear directions are expressed in the schistosity and foliation trajectories, fault orientation and the alignment of the volcanic cones as well. In the Bafoussam area, four types of granitoids can be distinguished, including: (i) the biotite granitoid, (ii) the deformed biotite granitoid, (iii) the mega feldspar granitoid, and (iv) the two-mica granitoid. These granitoids occur as elongated plutons hosting irregular mafic enclaves (amphibole-bearing, biotite-rich, and metagabbroic types) and are frequently cut by late pegmatites, aplite dykes and quartz veins. Petrographically, they range in composition from syenogranite (major), alkali-feldspar granite, granodiorite, monzogranite, quartz-syenite, quartzmonzonite to quartz-monzodiorite. Potassium feldspar, quartz, plagioclase and biotite are the principal phases, in cases accompanied by amphibole and accessory minerals such as apatite,zircon, monazite, titanite, allanite, ilmenite and magnetite. Sericite, epidote and chlorite are secondary minerals. In addition, the two-mica granitoid contains primary muscovite and sometimes igneous garnet. In the granitoids, potassium feldspar is orthoclase (microcline and orthoclase: Or81-97Ab19-3), and plagioclase is mainly oligoclase with some albite and andesine (An3-35Ab96-64).Biotite is Fe-rich (meroxene and lepidomelane, with some siderophyllite), having high Fe2+/(Fe2+ + Mg) ratios of 0.40-0.80. It is a re-equilibrated primary biotite and suggests calc-alkaline and peraluminous nature of the host granitoids. Amphibole is edenitic and magnesian hastingsitic hornblende, with high Mg/(Mg + Fe2+) ratios of 0.50-0.62. The evolution of the hornblende was dominated by the edenitic, tschermakitic, pargasitic and hastingsitic substitution types. Primary muscovite is iron-rich [Fe2+/(Fe2+ + Mg) = 0.52-0.82] and has experienced celadonite and paragonite substitutions. Igneous garnet is almandine-spessartine (XFe = 0.99 and XMn = 0.46-0.56). The euhedral grain shapes of garnet crystals and the absence of inclusions coupled with the high Mn and Fe2+contents (2.609-3.317 a.p.f.u and 2.646-3.277 a.p.f.u,respectively) and low Mg contents (0.012-0.038 a.p.f.u) clearly point to its plutonic origin. The Mn-depletion crystallization model is suggested for the origin of the analyzed garnet, i.e. initial crystallization of garnet inducing early decrease of Mn in the original melt. Aluminum-in-hornblende and phengite barometric estimates show that the granitoids crystallized at 4.2 ± 1.1 to 6.6 ± 1.0 kbar, corresponding to emplacement depths of 15-24 km.Zircon and apatite saturation temperature calibrations and hornblende-plagioclase thermometry yielded emplacement temperatures between 772 ± 41 and 808 ± 34 °C. Except the two-mica granitoid, the titanite-magnetite-quartz assemblage gives oxygen fugacities ranging from 10-17 to 10-13, suggesting that the granitoids were produced by an oxidized magma. Since the twomica granitoid lacks magnetite, it was originated from a magma under reducing conditions, below the quartz-fayalite-magnetite buffer. Fluid inclusions in quartz from hydrothermal veins are secondary in nature and are found in trails along healed microcracks or in clusters. Two types of fluid inclusion have been recognized, mixed aqueous-non-aqueous volatile fluid inclusions subdivided into aqueous-rich mixed and non-aqueous volatile-rich mixed fluid inclusions, and pure aqueous fluid inclusions.The non-aqueous volatile-rich mixed fluid inclusions are one-, two-, or three-phase inclusions, whereas the aqueous-rich mixed fluid inclusions are exclusively three-phase inclusions. Both have similar low to moderate salinities (1 to 10 equiv. wt. \%). The total homogenization temperatures of the aqueous-rich mixed fluid inclusions are slightly lower than those of the nonaqueous volatile-rich mixed fluid inclusions, ranging from 150 to 250 °C and 170 to 300 °C,respectively. They contain nearly pure CO2, or CO2 with addition of 4.1-13.5 mole \% CH4 as volatile constituents. Pure aqueous fluid inclusions are two-phase with lower total homogenization temperatures (130-150 °C) and salinities ranging from 3 to 8 equiv. wt. \%. They display mixing salt system characteristics, having NaCl as the dominant salt and considerable amounts of other divalent cations. Aqueous-rich mixed fluid inclusions and pure aqueous fluid inclusions exhibit a low geothermal gradient value of 18 °C/km, whereas the non-aqueous volatiles-rich mixed fluid inclusions have a high density which correspond to high geothermal gradient of 68 °C/km. The studied granitoids are intermediate to felsic in compositions (56.9-74.6 wt. \% SiO2)and have high contents of alkalis K2O (1.73-7.32 wt. \%) and Na2O (1.25-5.13 wt. \%) but low abundances in MnO (0.01-0.20 wt. \%), MgO (0.10-3.97 wt. \%), CaO (0.37-4.85 wt. \%), P2O5(up to 0.90 wt. \%). They display variable contents in TiO2 (0.07-0.91 wt. \%), Fe2O3* (total Fe = 0.96-7.79 wt. \%) and Al2O3 (12.0-17.6 wt. \%) contents. The granitoids show a wide range of high-field-strength elements (HFSE) and large ion lithophile elements (LILE) contents, with felsic granitoids being enriched in HFSE and the intermediate granitoids displaying in contrast high LILE concentrations. They exhibit chemical characteristics of non-alkaline to mid-alkaline, alkali-calcic, calc-alkaline, K-rich to shoshonitic, ferriferous affinities. Chondrite-normalized rare earth element (REE) patterns are characterized by a strong enrichment in light compared to heavy REEs [(La/Sm)N = 3.23-9.65 and (Ga/Lu)N = 1.45-5.54, respectively], with small to significant negative Eu anomalies (Eu/Eu* = 0.28-1.08). Ocean ridge granites (ORG)normalized multi-elements spidergrams display typical collision-related granites pattern, with characteristic negative anomalies of Ba, Nb and Y, and positive anomalies in Rb, Th and Sm. The granitoids under study are genetically I-type granitoids (biotite granitoid, deformed biotite granitoid and mega feldspar granitoid) and one S-type granitoid (two-mica granitoid). The I-type granitoids are metaluminous (ASI: 0.70-1.00) or moderately peraluminous if highly fractionated (ASI: 1.01-1.06). The geochemistry and petrological features of these I-type granitoids argue for close genetic relationships and it is suggest that they originated from a single parent magma. The observed variability in mineralogy and major and trace element compositions in these granitoids are then the reflection of the fractional crystallization that evolved separation of plagioclase, biotite, K-feldspar and accessory minerals at the level of emplacement. The two mica S-type granitoid is exclusively peraluminous (ASI: 1.07-1.25) and classified as a peraluminous leucocratic granitoid or leucogranite. It is marked in its CIPW normative composition by the permanent presence of corundum, ranging between 0.12 and 3.03. The Bafoussam granitoids were emplaced in a syn- to post-collisional tectonic environment. The observed deformational features and the concentrations in Y, less than 40 ppm, confirm that they are related to an orogenesis. Whole-rock Rb-Sr isochrons defines an igneous crystallization ages of 540 ± 27 Ma for the biotite granitoid and 587 ± 41 Ma for the mega feldspar granitoid. These ages fit with the range of Pan-African granitoid ages (650-530 Ma) in West Cameroon and correspond to the Pan-African D2 deformation event in the Neoproterozoic Cameroon orogenic belt. The two-mica granitoid yields an older Rb-Sr isochron age of 663 ± 62 Ma which is considered to be probably a mixing age. The Nd-Sr isotopic compositions indicate that the I-type granitoids have been produced by partial melting of a tonalite-granodiorite source in the lower crust. This is supported by their initial 87Sr/86Sr(600 Ma) ratios (0.705-0.709) and by their WNd(600 Ma) values (0.2 to -6.3, mainly < 0). The two-mica granitoid was generated by partial melting of a greywacke-dominated source involving biotite-limited, biotite dehydration melting. Chemical data of the two-mica granitoid that support this hypothesis are low CaO/Na2O (0.11-0.38) and Sr/Ba (0.20-0.30), the high Rb/Sr (2.26-7.00), the high initial 87Sr/86Sr(600 Ma) ratios ranging from 0.708 to 0.720, the large range in Al2O3/TiO2 (47-204) and the negative WNd(600 Ma) values (-9.9 to -14.0). Moreover,the higher initial 87Sr/86Sr(600 Ma) ratios of the two-mica granitoid are consistent with an upper crust origin. The depleted mantle Nd model ages (TDM) of 1.3-2.3 Ga indicate that the studied granitoids originated by partial melting of Paleoproterozoic and Mesoproterozoic crust, with limited mantle-derived magma contribution. The high initial 87Sr/86Sr(600 Ma) ratios of these granitoids coupled with the wide negative WNd(600 Ma) values strongly suggest a very long residence time in the crust of their protoliths before the melting event. The petrologic signatures of the Bafoussam granitoids are similar to those described in other Pan-African belts of western Gondwanaland such as the neighbouring provinces of Nigeria and the Central African Republic, as well as in the Borborema Province of northeastern Brazil. This supports the previous hypothesis that the Central African fold Belt including Cameroon, Nigeria and the Central African Republic provinces has a continuation in Brazil.},
  subject      = {Kamerun <West>},
  language  = {en}
}
@phdthesis{Pietsch2005,
  author    = {Pietsch, Christof},
  title     = {The genetics of species differences within the genus Nasonia ASHMEAD 1904 (Hymenoptera: Pteromalidae)},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-14348},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2005},
  abstract  = {The genetics of species differences is an outstanding question in evolutionary biology. How do species evolve to become phenotypically distinct and how is the genetic architecture organized that underlie species differences? Phenotypic diverged traits are supposed to be frequently involved in prezygotic isolation, i.e. they prevent the formation of hybrids, whereas postzygotic isolation occurs when hybrids experience a fitness reduction. The parasitic wasp genus Nasonia represents an appropriate model system to investigate the genetics of species differences as well as the genetics of postzygotic isolation. The genus consists of three species N. vitripennis, N. longicornis and N. giraulti that differ particularly in male traits that are assumed to posses an adaptive significance: courtship behaviour and wing size differences. The courtship behaviour consists of cyclically repeated series of head nods that are separated by pauses. The stereotypic performance allowed to split up the display into distinct courtship components. Males of N. vitripennis bear vestigial forewings and are incapable of flight, whereas N. longicornis wear intermediate sized wings and N. giraulti is fully capable of flying. Nasonia species can produce interspecific hybrids after removing Wolbachia bacteria induced hybrid incompatibilities with antibiotics. Postzygotic isolation occurs to different extent and is asymmetric among reciprocal crosses, e.g. inviability is stronger in the N. vitripennis (\&\#9792;) x N. longicornis (\&\#9794;) cross than in the N. longicornis (\&\#9792;) x N. vitripennis (\&\#9794;) cross. The formation of hybrids allow to study the genetic of species differences in QTL (quantitative trait locus) analyses as well as the genetics of postzygotic isolation causing hybrid inviability. The aim of the study was to investigate the genetic architecture of differences in courtship behaviour and wing size between N. vitripennis and N. longicornis and to assess the genetics of postzygotic isolation to gain clues about the evolutionary processes underlying trait divergence and establishment of reproductive isolation between taxa. In a QTL analysis based on 94 F2-hybrid individuals of an LV cross only few QTL for wing size differences have been found with relatively large effects, although a large proportion of the phenotypic variance remained unexplained. The QTL on courtship behaviour analysis based on 94-F2 hybrid males revealed a complex genetic architecture of courtship behaviour with QTL of large phenotypic effects that explained more than 40 \% of the phenotypic variance in one case. Additionally, an epistatic analysis (non-additive interlocus interaction) of courtship QTL revealed frequent genetic interchromsomal relations leading in some instances to hybrid specific effects, e.g. reversion of phenotypic effects or the transgression of phenotypes. A QTL analysis based on a threefold sample size revealed, however, an overestimation of QTL effects in the analysis based on smaller sample size pointing towards a genetic architecture of many loci with small effects governing the phenotypic differences in courtship behaviour. Furthermore, the the study comprised the analysis of postzygotic isolation in the reciprocal crosses N. vitripennis (\&\#9792;) x N. longicornis (\&\#9794;) versus N. longicornis (\&\#9792;) x N. vitripennis (\&\#9794;) located several loci distributed over different chromosomes that are involved in hybrid incompatibility. The mapping of hybrid incompatibility regions reproduced for the first time the observed asymmetries in the strength of postzygotic isolation in reciprocal crosses of between the more distant related taxa within the genus Nasonia. Stronger postzygotic incompatibilities in the VL cross are supposed to result from the superposition of nuclear-nuclear incompatibilities with nuclear-cytoplasmic incompatibilities, whereas the coincidences of these to types of incompatibilities were found to be much weaker in the reciprocal LV cross.},
  subject      = {Pteromalidae},
  language  = {en}
}
@phdthesis{Rabie2005,
  author    = {Rabie, Tamer},
  title     = {Cellular regulation of platelet glycoprotein VI : in vivo and in vitro studies in mice},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-14267},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2005},
  abstract  = {Platelet interaction with the subendothelium is essential to limit blood loss after tissue injury. However, upon rupture of atherosclerotic plaques, this interaction may result in blood vessel occlusion leading to life threatening diseases such as myocardial infarction or stroke. Among the subendothelial matrix proteins, collagen is considered to be the most thrombogenic component as it directly activates platelets. Platelets interact with collagen, either indirectly through glycoprotein (GP) Ib-V-IX receptor complex, or directly through the major collagen receptor on the platelet surface, GPVI. The work presented here focused on studying the cellular regulation of GPVI. In addition, a possible role for GPVI in thrombus formation induced by atherosclerotic plaque material was investigated and it was found that GPVI plays an important role in this process. Using a recently published mitochondrial injury model, it was found that GPVI contains a cleavage site for a platelet-expressed metalloproteinase. Further studies showed that platelet activation by CRP, or thrombin induced down-regulation of GPIb\&\#61537;, but not GPVI. In parallel, cellular regulation of GPV was studied and it was found that GPV is cleaved in vitro by the metalloproteinase ADAM17. In previous studies it was shown that injection of mice with the anti-GPVI mAb, JAQ1, induces GPVI down-regulation, which is associated with a strong, but transient, thrombocytopenia. Using new anti-GPVI mAbs, which bind different epitopes on the receptor, it is shown in this study that GPVI down-regulation occurs in an epitope-independent manner. Further experiments showed that antibody treatment induces a transient, but significant increase in bleeding time. Using different genetically modified mice, it is shown that, upon antibody injection, GPVI is both, shed from the platelet surface and internalized into the platelet. Signaling through the immunoreceptor tyrosine-based activation motif (ITAM) of the FcR\&\#61543; chain is essential for both processes, while LAT and PLC\&\#61543;2 are essential for the shedding process only. Antibody-induced increase in bleeding time and thrombocytopenia were absent in LAT deficient mice, showing that it is possible to uncouple the associated side effects from the down-regulation process. As antibody-induced GPVI internalization still occurs in LAT and PLC\&\#61543;2 deficient mice, this suggests a novel signaling pathway downstream of GPVI that has not been described so far.},
  subject      = {Maus},
  language  = {en}
}
@phdthesis{Hipondoka2005,
  author    = {Hipondoka, Martin H.T.},
  title     = {The development and evolution of Etosha Pan, Namibia},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-14351},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2005},
  abstract  = {This study explores and examines the geomorphology of a large endorheic basin, approximately twice the size of Luxemburg, situated in the Etosha National Park, Namibia. The main focus is directed on how and when this depression, known as Etosha Pan, came into being. Geomorphological investigation was complemented and guided primarily by the application and interpretation of satellite-derived information. Etosha Pan has attracted scientific investigations for nearly a century. Unfortunately, their efforts resulted into two diverging and mutually exclusive views with respect to its development. The first and oldest view dates back to the 1920s. It hypothesized Etosha Pan as a desiccated palaeolake which was abandoned following the river capture of its major fluvial system, the Kunene River. The river capture was assumed to have taken place in the Pliocene/Early Pleistocene. In spite of the absence of fluvial input that the Kunene contributed, the original lake was thought to have persisted until some 35 ka ago, long after the Kunene severed its ties with the basin. The current size of the basin and its playa status was interpreted to have resulted from deteriorating climatic conditions. The opposing view emerged in the 1980s and gained prominence in the 1990s. This view assumed that there were an innumerable number of small pans on the then surface of what later to become Etosha Pan. Since the turn of the Pliocene to Early Pleistocene, these individual pans started to experience a combined effect of fluvial erosion during the rainy season and wind deflation during the dry period. The climatic regime during that entire period was postulated to be semi-arid as today. This climatic status was used to rule out any existence of a perennial lake within the boundary of Etosha since the Quaternary. Ultimately, these denudational processes, taking place in a seasonal rhythm, caused the individual pans to deepen and widen laterally into each other and formed a super-pan that we call Etosha today. Thus the Kunene River had no role to play in the development of the Etosha Pan according to this model. However, proponents of this model acknowledged that the Kunene once fed into the Owambo Basin and assigned the end of the Tertiary to the terminal phase of that inflow. Findings of this study included field evidence endorsing the postulation that the Kunene River had once flowed into the Owambo Basin. Its infilled valley, bounding with the contemporary valley of the Kunene near Calueque, was identified and points towards the Etosha Pan. It is deliberated that a large lake, called Lake Kunene, existed in the basin during the time. Following the deflection of the Kunene River to the coast under the influence of river incision and neo-tectonic during the Late Pliocene, new dynamics were introduced over the Owambo Basin surface. After the basin was deprived of its major water and sediment budget that the Kunene River contributed, it was left with only smaller rivers, most notably the Cuvelai System, as the only remaining supplier. This resulted in the Cuvelai System concentrating and limiting its collective load deposition to a lobe of Lake Kunene basin floor. The accident of that lobe is unclear, but it is likely that it constituted the deepest part of the basin at the time or it was influenced by neo-tectonic that helped divert the Kunene River or both. Against the backdrop of fluvial action that was initiating the new lake, most parts of the rest of the basin, then denied of lacustrine activity, were intermittently riddled with a veneer of sediment, especially during phases of intensified aeolian activity. In the mean time, the area that was regularly receiving fluvial input started to shape up as a distinct lake with the depositions of sediments around the water-body, primarily via littoral action, serving as embankment. Gradually, a shoreline is formed and assisted in fixing and delineating the spatial extent of the new and much smaller lake, called Lake Etosha. That Lake Etosha is the predecessor of the modern day Etosha Pan. Indicators for a perennial lake found in this study at Etosha include fossil fragments of Clariidae species comparable to modern species measuring some 90 cm, and those of sitatunga dated to approximately 5 ka. None of these creatures exist today at Etosha because of their ecological requirements, which among others, include permanent water. The sitatunga, in addition, is known as the only truly amphibious antelope in the world. Since its inception, the new lake underwent a number of geomorphological modifications. A prominent character amongst these modifications is the orientation of the lake, which has its long-axis oriented in the ENE-WSW direction. It resulted from wave action affected by the prevailing dominant northeasterly wind, which is believed to have been in force since the Middle Pleistocene. Lake Etosha has also witnessed phases of waning and waxing under the influence of the prevailing climatic regime. Over the last 150 ka, the available data intercepted about seven phases of high lake levels. These data are generally in agreement with regional palaeoclimatic data, particularly when compared with those obtained from neighbouring Makgadikgadi Pans in Botswana. The last recorded episode of the wet phase at Etosha was some 2,400 years before the present.},
  subject      = {Etoschapfanne},
  language  = {en}
}
@phdthesis{Strehl2005,
  author    = {Strehl, Christoph-Peter},
  title     = {Evolution of colony characteristics in the harvester ant genus Pogonomyrmex},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-14324},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2005},
  abstract  = {Die Gattung Pogonomyrmex ist besonders gut geeignet, um die Evolution der Charakteristika von Ameisenkolonien allgemein zu untersuchen, und insbesondere deren soziogenetische Struktur, da die Biologie f{\"u}r einige ihrer Arten sehr gut bekannt ist, und eine Diversit{\"a}t an Paarungsh{\"a}ufigkeiten und K{\"o}nniginnenzahlen vorkommt. Diese Variation in der soziogenetischen Struktur der Kolonien erzeugt eine hohe Varianz an Verwandschaftsgraden innerhalb von Kolonien, und kann eine Hauptkomponente darstellen, welche die Evolution verschiedenster Koloniecharakteristika vorantreibt. Um die Variabilit{\"a}t intrakolonialer Verwandschaftsgrade innerhalb der Gattung Pogonomyrmex genau zu bestimmen, wurde f{\"u}r ausgew{\"a}hlte Mitglieder der Gattung, n{\"a}mlich f{\"u}r P. (sensu stricto) rugosus, P. (sensu stricto) badius and P. (Ephebomyrmex) pima, mit Hilfe der Technik des DNA-Fingerabdruckes die Anzahl an Matrilinien und Patrilinien bestimmt. Es wurde versucht die Evolution dieser Koloniecharakteristika vor dem Hintergrund einer Phylogenie zu erkl{\"a}ren. Zu diesem Zweck wurde ein Gen-Stammbaum f{\"u}r 39 Arten der Gattung Pogonomyrmex erstellt. Die Artabdeckung betrug 83\% bei den Nord-Amerikanischen, und 43\% bei den S{\"u}d-Amerikanischen Arten. Effektive Mehrfachpaarung von K{\"o}niginnen wurde f{\"u}r P. rugosus (me=4.1) und P. badius (me=6.7) best{\"a}tigt. Zus{\"a}tzlich wurde gezeigt, dass beide Arten monogyn sind. Diese Ergebnisse best{\"a}tigen Verhaltensbeobachtungen von Mehrfachpaarungen in diesen Arten. Mittlerweile ist Mehrfachpaarung in 9 Pogonomyrmex Arten bekannt (bei 3 Arten durch Verhaltensbeobachtungen - bei 6 Arten durch genetischen Nachweis). In P. (E.) pima hingegen waren alle der untersuchten K{\"o}niginnen einfach gepaart (me=1.0). Daher k{\"o}nnte es sein, dass Mehrfachpaarung entweder fr{\"u}h in der Evolution der Gattung Pogonomyrmex entstand und nachtr{\"a}glich in der Untergattung Ephebomyrmex verloren wurde (Plesiomorphie-Hypothese), oder sie entstand zum ersten mal in der Untergattung Pogonomyrmex sensu stricto (Apomorphie-Hypothese). In P. huachucanus, einer Art, die basal zu dem Nord-Amerikanischen sensu stricto Komplex ist, k{\"o}nnten die im Vergleich zu ihren sensu stricto Verwandten geringeren effektiven Paarungsh{\"a}ufigkeiten der K{\"o}niginnen (J. Gadau and C.-P. Strehl, unver{\"o}ffentlicht) einen Wechsel von Monandrie zu Polyandrie im Verlauf der Entstehung der fortschrittlicheren sensu stricto Arten widerspiegeln, was die Apomorphie-Hypothese unterst{\"u}tzen w{\"u}rde. Die intrakolonialen Verwandtschaftsgrade sind dennoch in P. (E.) pima niedrig. Dies ist m{\"o}glicherweise auf mehrere reproduktive K{\"o}niginnen (Polygynie) zur{\"u}ckzuf{\"u}hren. Polygynie ist ebenfalls dokumentiert f{\"u}r mindestens vier weitere Arten der Untergattung Ephebomyrmex, mit genetischer Evidenz allerdings bisher nur f{\"u}r P. (E.) pima. Es k{\"o}nnte sein, dass es einen evolution{\"a}ren Ausgleich (trade-off) zwischen Polyandrie und Polygynie innerhalb der Untergattung Ephebomyrmex gab, und daher beide Untergattungen eine hohe genetische Vielfalt innerhalb der Kolonien behielten. Diese hohe genetische Vielfalt k{\"o}nnte einer der Gr{\"u}nde sein f{\"u}r den Erfolg und die Radiation der Gattung Pogonomyrmex in Trockengebieten. Evolution k{\"o}nnte eine hohe genetische Vielfalt von Pogonomyrmex Kolonien beg{\"u}nstigt haben, da sie den Kolonien hilft die Organisation der Kolonie und die Effizienz mit der externe Aufgaben ausgef{\"u}hrt werden zu verbessern. Wenigstens in P. badius konnte eine Verkn{\"u}pfung zwischen Patrilinien und physischem Polyethismus gefunden werden, was auf eine Verbesserung der Kolonieorganisation mit Hilfe von Polyandrie hindeutet. Dar{\"u}ber hinaus k{\"o}nnten die dargelegten extremen Polyandrie- Werte den P. badius-Weibchen helfen die M{\"o}glichkeit der Inzucht aufgrund eingeschr{\"a}nkter Ausbreitung zu bew{\"a}ltigen. Eine eingeschr{\"a}nkte Ausbreitung wird auch in P. (E.) pima durch fl{\"u}gellose, intermorphe K{\"o}niginnen beobachtet. Jedoch wird bei P. (E.) pima die Inzucht durch Auskreuzen mittels M{\"a}nnchen m{\"o}glicherweise verhindert, da keine signifikante Inzucht gefunden wurde. In den vorliegenden Gen-Stammb{\"a}umen war die Untergattung Pogonomyrmex Ephebomyrmex von der Untergattung Pogonomyrmex sensu stricto getrennt. Daher k{\"o}nnte es sein, dass P. Ephebomyrmex in den Status einer Gattung erhoben wird, auch aufgrund distinkter morphologischer und lebensgeschichtlicher Charaktere. F{\"u}r eine pr{\"a}zise taxonomische Revision m{\"u}sste allerdings eine breite Erg{\"a}nzung an Arten vorgenommen werden. Es wurde in P. rugosus Kolonien normalerweise eine geringe Anzahl von unverwandten Arbeiterinnen vorgefunden, die m{\"o}glicherweise aus Brutraub ausgewachsener Kolonien auf G{\"u}ndungs-Kolonien stammen. Es ist allseits bekannt, dass die meisten Gr{\"u}ndungskolonien von benachbarten, ausgewachsenen Kolonien der eigenen Art zerst{\"o}rt werden, aber es wurde bisher angenommen, dass die Brut dieser Kolonien ebenfalls zerst{\"o}rt wurde. Dieser oft vernachl{\"a}ssigte Aspekt k{\"o}nnte einen wichtigen St{\"a}rke-Bonus f{\"u}r ausgewachsene Kolonien darstellen.},
  subject      = {Pogonomyrmex},
  language  = {en}
}
@phdthesis{AlOuran2005,
  author    = {Al-Ouran, Nedal},
  title     = {Environmental assessment, documentation and spatial modeling of heavy metal pollution along the Jordan Gulf of Aqaba using coral reefs as environmental indicator},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-14090},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2005},
  abstract  = {Two phases of reef sampling were carried out. The first included regular samples taken along the coastline of Aqaba (27km long) at depths of 4-15m, and used to determine spatial distribution of pollution. The second phase included three 20cm-deep cores obtained from within the industrial zone. These cores were drilled from pre-dated communities, where the growth rate was determined earlier to be 10mm y-1, therefore the core obtained represented a period of 20 years (i.e. 1980-2000). The cores were used to reconstruct the metal pollution history at the most heavily used site along the coast (industrial zone).All samples were examined with respect to their metal content of Cd, Pb, Cu, Zn, Ni, and Cr. Almost all of them have shown records above the calculated background values. Mean values of Cd, Pb, Cu, Zn, Ni and Cr recorded along the coast were 1,25; 4,26; 9,76; 11,40; 2,29 and 10,522, µg g-1 respectively, and for core samples 1.4; 4.2; 5.7; 6.4; 2.3 and 8.21 µg g-1 respectively. Spatial distribution of metal enrichment in reef samples have shown a general and clear increasing trend towards the south. Same increasing trend was also in core samples where the six metals have shown a prominent increasing trend towards the core surface indicating an increase of coastal activities during the last twenty years. High and relatively high values were recorded at the oil port, the industrial area and main port, and thus categorized as highly impacted areas. Intermediate metal content were recorded in samples of the north beach, and thus classified as being relatively impacted, where the lowest metal concentrations were observed at the marine reserve, the least impacted site along the coast. The high enrichment of metal is attributed mainly to anthropogenic impacts. The natural inputs of the six metals studied in the Gulf of Aqaba are generally very low, due to the geographic positions and the absence of wadi discharge and as a result of low rainfall. Several potential sources of heavy metals were investigated. The industrial-related activities, port operations and phosphate dust were among the main sources currently threatening the marine ecosystem in Aqaba. Applying the Principle Components Analysis method (PCA) to all samples taken along the coastline has resulted in categorizing three different groups according to their metal enrichment, the first is composed of samples taken from the north beach and the main port with intermediate to high enrichment, the second joined the samples of the marine park and the marine reserve with low and relatively low enrichment, and the last group joined samples of the industrial zone and the oil port with high enrichment. The Principle Component Scores were also utilized to confirm the spatial distribution and relationships of the examined heavy metals along the coast. Two models (interpolated by SURFER \&\#61666; 7.0 and ArcView\&\#61666; 3.2a) were developed, the first was based on the PC scores of the first component, and shows clearly the positive anomalies in metal concentrations along the coast. The second model was developed by plotting the second factor scores on a landuse map of Aqaba. According to these models, it has shown that the positive anomalies are associated with three different zones; industrial area, the main port and the oil port. The results have shown that coral reefs can be used as good environmental indicator for assessments and monitoring processes, and they can provide data and information on both the spatial distribution of pollution and their history. The present work is the first to document the environmental status along the whole coast of Aqaba and the first to use coral reef as a tool/ indicator.},
  subject      = {Golf von Akaba},
  language  = {en}
}
@phdthesis{Huenten2005,
  author    = {H{\"u}nten, Peter},
  title     = {Channel-forming proteins in the cell wall of amino acid-producing Corynebacteria},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-13890},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2005},
  abstract  = {Corynebacterium glutamicum is together with C. callunae and C. efficiens a member of the diverse group of mycolic-acid containing actinomycetes, the mycolata. These bacteria are potent producer of glutamate, lysine and other amino acids on industrial scale. The cell walls of most actinomycetes contain besides an arabinogalactan-peptidoglycan complex large amounts of mycolic acids. This three-layer envelope is called MAP (mycolyl-arabinogalactan-peptidoglycan) complex and it represents a second permeability barrier beside the cytoplasmic membrane similar to the outer membrane of Gram-negative bacteria. In analogy to the situation in the outer membrane of Gram-negative bacteria, channels are present in the mycolic acid layer of the mycobacterial cell wall for the passage of hydrophilic solutes. Molecular studies have provided far-reaching findings on the amino acid flux and its balance in C. glutamicum in general, but the L-glutamate export still remains unknown. The properties of the outer layers, typical of mycolata, seem to be of major importance in this process, and diffusion seems to play a key role for this part of the cell wall. The major aim of this thesis was to identify and study novel channel-forming proteins of the amino acid producers C. glutamicum, C. callunae and C. efficiens. Cell wall extracts of the organisms were investigated and a novel pore-forming protein, named PorH, that is homologue in all three organisms, was detected and characterized. PorHC.glut was isolated from C. glutamicum cells cultivated in minimal medium. The protein was identified in lipid bilayer experiments and purified to homogeneity by fast-protein liquid chromatography across a HiTrap-Q column. The purified protein forms cation-selective channels with a diameter of about 2.2 nm and an average single-channel conductance of about 2.5 nS in 1 M KCl in the lipid bilayer assay. Organic solvent extracts were used to study the permeability properties of the cell wall of C. callunae and C.efficiens. The cell extracts contained channel-forming activity, the corresponding proteins were purified to homogeneity by fast-protein liquid chromatography across a HiTrap-Q column and named PorHC.call and PorHC.eff. Channels formed by PorHC.call are cation-selective with a diameter of about 2.2 nm and an average single-channel conductance of 3 nS, whereas PorHC.eff forms slightly anion selective channels with an average single-channel conductance of 2.3 nS in 1 M KCl in the lipid bilayer assay. The PorH proteins were partially sequenced and the corresponding genes, which were designated as porH, were identified in the published genome sequence of C. glutamicum and C. efficiens. The chromosome of C. callunae is not sequenced, but PorHC.call shows a high homology to PorHC.eff and PorHC.glut. The proteins have no N-terminal extension, only the inducer methionine, which suggests that secretion of the proteins could be very similar to that of PorAC.glut of C. glutamicum. PorHC.glut is coded in the bacterial chromosome by a gene that is localized in the vincinity of the porAC.glut gene, within a putative operon formed by 13 genes that are encoded by the minus strand. Both porins are cotranscribed and coexist in the cell wall, which was demonstrated in RT-PCR and immunological detection experiments. The arrangement of porHC.glut and porAC.glut on the chromosome is similar to that of porBC.glut and porCC.glut and it was found that PorAC.glut, PorHC.glut, PorBC.glut and PorCC.glut coexist in the cell wall of C. glutamicum. The molecular mass of about 6 kDa of the PorH channel forming proteins is rather small and suggests that the cell wall channels are formed by oligomers. A possibly hexameric form was demonstrated for PorHC.glut in Western blot analysis with anti- PorHC.glut antibodies. Secondary structure predictions for PorHC.glut, PorHC.call and PorHC.eff predict that a stretch of about 42 amino acids of PorHC.glut and 28 amino acids of PorHC.call and PorHC.eff forms amphipathic \&\#61537;-helices with a total length of 6.3 nm and 4.2 nm respectively. This should be sufficient to cross the mycolic acid layer. Another objective of this work was to establish an heterologous expression system for corynebacterial channel-forming proteins, to investigate the channel-forming properties of the up to now only hypothetical porins PorA, PorB, PorC from C. efficiens and PorC from C. glutamicum. We could demonstrate with recombinant expression experiments in E. coli that porBC.eff and porCC.eff encode for channel-forming proteins. They are, like PorBC.glut, anion-selective with a similar single-channel conductance of 1 nS in 1 M KCl.},
  subject      = {Corynebacterium callunae},
  language  = {en}
}
@phdthesis{Mahnkopf2005,
  author    = {Mahnkopf, Sven},
  title     = {Photonic crystal based widely tunable laser diodes and integrated optoelectronic components},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-13860},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2005},
  abstract  = {In a first aspect of this work, the development of photonic crystal based widely tunable laser diodes and their monolithic integration with photonic crystal based passive waveguide and coupler structures is explored theoretically and experimentally. In these devices, the photonic crystal is operated in the photonic bandgap which can be used for the realization of effective reflectors and waveguide structures. Such tunable light sources are of great interest for the development of optical network systems that are based on wavelength division multiplexing. In a second aspect of this work, the operation of a photonic crystal block near the photonic band edge is investigated with respect to the so-called superprism effect. After a few introductory remarks that serve to motivate this work, chapter 3 recapitulates some aspects of semiconductor lasers and photonic crystals that are essential for the understanding of this work so that the reader should be readily equipped with the tools to appreciate the results presented in this work.},
  subject      = {Laserdiode},
  language  = {en}
}
@phdthesis{FernandezMora2005,
  author    = {Fern{\´a}ndez-Mora, Eugenia},
  title     = {Analysis of the maturation of Rhodococcus equi-containing vacuoles in macrophages},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-14049},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2005},
  abstract  = {Rhodococcus equi is a Gram-positive intracellular pathogen which can cause severe bronchopneumonia in foals. In recent years, the role of this bacterium as human pathogen has been noted, as R.equi infections in humans have increase in frequency. This increase is associated with the rise in immunosupressed individuals, specially AIDS patients, where infection leads to symptoms and pathology similar to those seen in foals with a high mortality rate. Due to its capability to survive and multiply in murine and equine macrophages, R.equi has been classified as a facultative intracellular bacterium. R.equi is found frequently in macrophages in alveolar infiltrate from infected animals. The pathogenicity of R.equi depends on its ability to exist and multiply inside macrophages and has been associated with the presence of virulence plasmids. It has been observed that, inside foal alveolar macrophages, R.equi-containing vacuoles (RCVs) do not mature into phagolysosomes. However, most of the intracellular events during R.equi infection have not been investigated in detail. The aim of this study was to elucidate the intracellular compartmentation of R.equi and the mechanism by which the bacteria avoid destruction in host macrophages. The importance of the virulence-associated plasmids of R.equi for the establishment of RCVs was also evaluated. Furthermore, the intracellular fate of viable and non-viable R.equi was compared in order to study whether viability of R.equi influeciantes the establishment of RCVs. In this study, the RCV was characterized by using a variety of endocytic markers to follow the path of the bacteria trhough murine macropages. Transmission electron microscopy-base analysis showed that R.equi was found equally frequently in phagosomes with loosely or thightly apposed membranes, and RCV often contains numerous membranous vesicles. Laser scanning microscopy of infected macrophages showed that the majority of phagosomes containing R.equi acquired transiently the early endosomal markers Rab5, Ptlns3P, and EEA-1, suggesting initially undisturbed phagosome maturation. Although the RCV acquired some late endosomal markers, such as Rab7, LAMP-1, and Lamp-2, they did not acquired vATPase, did not interact with pre-labeled lysosomes, and failed to acidify. These data clearly suggest that the RCV is a compartment which has left vacuoles that resemble multivesicular body compartments (MVB), which are transport intermediates between early and late endosomes and display internal vesicles very similar to the ones observed within RCVs. Analyisis of several R.equi strains containing either VapA- or VapB-expressing plasmids or neither demonstrated that the possession of the virulence-associated plasmids does not affect phagosome trafficking over a two hour period of infection. The finding that non-viable R.equi was still able to inhibit phagosome maturation (although not to the same extent as viable R.equi did) suggests that heat-insensitive factors, such as cell periphery lipids, may play a major role in inhibition of phagosome maturation, although heat-sensitive factors may also be involved.},
  subject      = {Rhodococcus equi},
  language  = {en}
}
@phdthesis{Maksimenka2005,
  author    = {Maksimenka, Raman},
  title     = {Techniques in frequency conversion and time-resolved spectroscopy with nonlinear optical processes in the femtosecond regime},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-14087},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2005},
  abstract  = {Nichtlineare Frequenzumsetzung der niederenergetischen femtosekunden Laserpulsen wurde in den Festk{\"o}rpermitteln nachgeforscht. Ramanumwandlung im weiss-Licht-freien Regime des impulsiven stimulierten Raman Streuungs wurde erzielt, indem man KGW-Kristall mit den Bessel-Lichtstrahl pumpte. Leistungs-f{\"a}higes Superkontinuumerzeugung wurde f{\"u}r die sub-microjule Pulse demonstriert, die in Mikrostrukturfaser fokussiert wurden. Anwendung von Vier-Wellen-Mischung Techniken zur {\"U}berwachung der Aufregenzustandsdynamik in den mehratomigen Molek{\"u}len wurde demonstriert. Zeitkonstanten der Prozesse, die auf Schwingungsenergiewiederverteilung nach dem ursprunglichen Photoanregung von Stilben-3 bezogen wurden, wurden mittels der Pump-CARS Technik festgestellt, in der CARS-Prozess als wirkungsvoller Modus-vorgew{\"a}hlter Filter diente. Spektrale sowie zeitliche Eigenschaften der elektronischen Entspannungbahnen in den Azulenderivats wurden erforscht, indem man verg{\"a}nglichen-Bev{\"o}lkerungs-Gittern und Pump-Probe verg{\"a}nglichen Absorptions Techniken verwendete.},
  subject      = {Frequenzumsetzung},
  language  = {en}
}
@phdthesis{Joshi2005,
  author    = {Joshi, Sanjeev},
  title     = {Preparation and characterization of CdS nanoparticles},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-13395},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2005},
  abstract  = {Zusammenfassung CdS-Nanoteilchen mit Gr{\"o}ßen zwischen 1.1 und 4.2 nm wurden in {\"A}thanol und mit Thioglycerol (TG)-H{\"u}lle synthetisiert. Es wurde gezeigt, dass die nass-chemische Synthese ohne Wasser und die Verwendung von TG als H{\"u}lle folgende Vorteile bieten: Es konnten kleinere Teilchen hergestellt und eine schmalere Gr{\"o}ßenverteilung erzielt werden. Zus{\"a}tzlich wird dem Altern der Teilchen vorgebeugt, und die Ergebnisse sind besser reproduzierbar. Hochaufgel{\"o}ste Photoemissions-Messungen an kleinen CdS-Teilchen (1.1, 1.4, 1.7, 1.8; 1.8 nm mit Glutathion-H{\"u}lle) ergaben Beitr{\"a}ge von f{\"u}nf verschiedenen Schwefelatom-Typen zum S 2p-Gesamt Signal. Außerdem wurde beobachtet, dass Nanoteilchen unterschiedlicher Gr{\"o}ße und/oder mit unterschiedlichen H{\"u}llen-Substanzen verschiedene Photoemissionsspektren zeigen und verschieden starke Strahlensch{\"a}den aufweisen. Bei den 1.4 nm großen CdS-Teilchen entsprechen die Komponenten des S 2p-Signals entweder Schwefelatomen mit unterschiedlichen Cd-Nachbarn, Thiol-Schwefelatomen oder teilweise oxidiertem Schwefel. Die jeweilige Zuweisung der Schwefeltypen erfolgte {\"u}ber Intensit{\"a}ts-{\"A}nderungen der einzelnen S 2p-Komponenten als Funktion der Photonenenergie und des Strahlenschadens. Die Daten der 1.4 nm großen CdS-Teilchen wurden mit PES-Intensit{\"a}ts-Rechnungen verglichen, die auf einem neuen Strukturmodell-Ansatz basieren. Von den drei verwendeten CdS-Strukturmodellen konnte nur ein Modell mit 33 S-Atomen die Variation der experimentellen Intensit{\"a}ten richtig wieder geben. Modelle von gr{\"o}ßeren Nanoteilchen mit beispielsweise 53 S-Atomen zeigen Abweichungen von den experimentellen Daten der 1.4 nm-Teilchen. Auf diese Weise kann indirekt auf die Gr{\"o}ße der gemessenen Teilchen geschlossen werden. Die Intensit{\"a}tsrechnungen wurden zum einen „per Hand" zur groben Absch{\"a}tzung durchgef{\"u}hrt, zum anderen wurden exaktere Berechnungen mit einem von L. Weinhardt und O. Fuchs entwickelten Programm angestellt. Diese best{\"a}tigen die Ergebnisse der Absch{\"a}tzung. Zudem wurde festgestellt, dass die inelastische freie Wegl{\"a}nge \&\#955; keinen signifikanten Einfluss auf die Modellrechnungen hat. Die gemessenen Intensit{\"a}ts-{\"A}nderungen konnten zwar mit mehreren leicht verchiedenen Modellen erkl{\"a}rt werden, allerdings f{\"u}hrte nur ein kugelf{\"o}rmiges Teilchen-Modell auch zu den richtigen Intensit{\"a}tsverh{\"a}ltnissen der einzelnen S 2p-Komponenten. Weiterhin konnte beobachtet werden, dass die elektronische Bandl{\"u}cke gr{\"o}ßer ist als die optische Bandl{\"u}cke. Bei den PES-Messungen wurden einige wichtige Einfl{\"u}sse sichtbar. So spielen strahlenbedingte Effekte eine große Rolle. Kenntnisse {\"u}ber die Zeitskala solcher Effekte erm{\"o}glichen PES-Aufnahmen mit guter Signal-Qualit{\"a}t und erlauben eine Extraploation zur Situation ohne Strahlenschaden. Auch die D{\"u}nnschicht-Pr{\"a}paration beeinflusst die Spektren. Beispielsweise zeigten mit Elektrophorese hergestellte Filme Hinweise auf Agglomeration. Schichten, die per Tropfen-Deposition erzeugt wurden, weisen spektrale {\"A}nderungen am Rand der Probe auf, und Filme aus Nanoteilchen-Pulver waren nicht homogen. Mikro-Raman Experimente, die in Kollaboration mit Dr. M. Schmitt und Prof. W. Kiefer durchgef{\"u}hrt wurden, ließen große Unterschiede in den Spektren von Nanoteilchen und TG in L{\"o}sung erkennen. Dies wurde vor allem auf das Fehlen von S - H -Bindungen zur{\"u}ckgef{\"u}hrt und zeigt damit, dass alle TG-Molek{\"u}le verwertet oder ausgewaschen wurden.},
  subject      = {Cadmiumsulfid},
  language  = {en}
}
@phdthesis{Bera2005,
  author    = {Bera, Holger},
  title     = {Halfsandwich tungsten complexes with a silanol-functionalized cyclopentadienyl ligand : synthesis and reactivity},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-13778},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2005},
  abstract  = {Within the studies concerning metallo-silanols, halfsandwich-tungsten complexes have been silanol-functionalized at the cyclopentadienyl ligand. The stability and the condensation behavior have been investigated. Thus, it was shown that these complexes are stable enough for isolation but they are reactiv enough for time-effective condensation reactions with diverse chlorosilanes, chlorostannanes or metalhalogenides. These processes are characterized by an increased reactivity in contrast to metallo-silanols with a direct metal-bonded silanol group and proves that the separation of the silanol group has to be regarded as a successful manipulation. In addition, this modification allows a wide variation of the ligand sphere of the metal which was shown by H/Cl exchange, methylation, silylation or phosphine substitution. These changes evoke a small but significant influence on the silanol group. For example leads an introduced phosphine to an enhanced stability of the silanol function. A further separation of the silanol group from the metal by an additional alkylidene spacer leads to the complete lost of the stabilizing effect of the metal fragment and generates silanols which show a condensation behavior very similar to those of ordinary organosilanols.},
  subject      = {Wolframkomplexe},
  language  = {en}
}
@phdthesis{Na2005,
  author    = {Na, Shin-Young},
  title     = {PKB/Akt : a critical regulator of lymphocyte, development and function},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-13755},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2005},
  abstract  = {Protein kinase B (PKB), a serine threonine kinase, is highly involved in the regulation of cellular proliferation and survival. To characterize PKB's function in lymphocyte development and activation, transgenic (tg) mice that express a membrane targeted constitutively active form of PKBa (myr PKB) in T and B cells were analysed. Thymocytes from myr PKB tg mice showed enhanced proliferation after T cell receptor (TCR) engagement compared to wild type (wt) mice. Astonishingly, myr PKB tg thymocytes were capable to proliferate in response to PMA only and were also less sensitive to inhibition by the calcineurin inhibitors CsA or FK506, which indicates the proliferative response of myr PKB tg T cells is relatively independent of calcium mobilisation and calcineurin activity. In addition, when TCR signalling was inhibited by the MEKinase inhibitor PD98059 or the Srckinase inhibitor PP1 myr PKB tg thymocytes again were more resistant to inhibition. Western blot analysis revealed myr PKB enhances activation of the kinases Lck, Raf and Erk after TCR/CD3 stimulation. Thus, myr PKB renders proliferative responses of thymocytes more sensitive to TCR signals by positive regulation of the Lck-Raf-MEK-Erk signalling pathway. Studies on the cellular location of the tg protein showed myr PKB is located in membrane socalled "lipid rafts". Furthermore, we found that after TCR/CD3 ligation endogenous cytoplasmic PKB moves into "lipid rafts", which highlights PKB as a crucial mediator of TCR proximal signalling events. Analysing three different TCR tg model systems for positive and negative selection of immature precursors in the thymus, we found myr PKB promotes positive selection of CD4+ but not CD8+ T cells. This most likely results from PKB's positive cross-talk on Lck-Raf-Erk signalling, which is known to influence thymocyte selection and CD4/CD8-lineage choice. Furthermore, myr PKB enhances phosphorylation of glycogen synthase kinase 3 (GSK3), a negative regulator of the transcription factor NFAT (nuclear factor of activated T cells) and T cell activation, and of the adapter protein c-Cbl. Concerning negative selection, myr PKB enhanced (OT1 mice), reduced (HY mice) or had no influence (OT2 mice) on negative selection. Thus, myr PKB's effect on negative selection strongly depends on the model system analysed and this most likely results from differences in TCR affinity/avidity and TCR specificity for MHC. 106 Peripheral CD4+ T cells from myr PKB tg mice showed enhanced production of both Th1 and Th2 cytokines. Furthermore, after TCR/CD3 stimulation in the presence of TGF-b1, wt CD4+ T cells showed a drastic inhibition of proliferation, whereas myr PKB tg CD4+ T cells proliferated even better, i.e. they were resistant to the inhibitory TGF-b1 signals. Expression of myr PKB in B cells leads to reduced Ca2+ flux and proliferation after BCR stimulation, but activation of Lyn, SLP-65, c-Cbl and GSK-3 were enhanced. When we analysed B cell subsets in myr PKB tg mice, a decrease in immature and mature B cells became obvious, whereas cell numbers for marginal zone (MZ) B cells were normal. In aged myr PKB tg mice we detected a very strong reduction of pro/pre and immature B cell populations in the bone marrow, indicating PKB is very important for maintenance of B cell development. Furthermore, myr PKB also lead to a strong reduction of peritoneal B-1 cells. However, expression of NFATc1, which is required for B-1 cell development, was comparable between wt and myr PKB tg B-1 cells. To analyse the effect of myr PKB on immunoglobulin production, mice were immunized with thymus dependent (TD) and independent (TI) antigens. In both cases, B cell responses were strongly elevated in myr PKB tg mice. Finally, RT-PCR analyses of in vitro expanded B cells revealed increased Blimp-1 and Notch3 expression in myr PKB tg B cells, which might be primary candidates involved in their enhanced effector function. In summary, this study clearly shows an important cross-talk between PKB and various critical signalling molecules downstream of the TCR and BCR. Thereby active PKB modulates and regulates the thresholds for thymocyte selection and T cell activation as well as for B cell development and function.},
  subject      = {Proteinkinase B},
  language  = {en}
}
@phdthesis{Zhou2005,
  author    = {Zhou, Qingchun},
  title     = {Molecular analysis of the sex-determining region of the Y chromosome in the platyfish Xiphophorus maculatus},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-13827},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2005},
  abstract  = {A large variety of sex determination systems have been described in fish. However, almost no information is available about sex determination in the classical fish models, the zebrafish Danio rerio and the pufferfish Takifugu rubripes. A DNA-binding protein gene called dmrt1bY (or DMY) has been recently described as an outstanding candidate for the primary sex-determining gene in the medaka fish Oryzias latipes. But this gene is not the universal master sex-determining gene in teleost fish, since dmrt1bY is not found in most other fishes. Hence, other fish models need to be examined including the platyfish Xiphophorus maculatus. Xiphophorus maculatus has three types of sex chromosomes (X, Y and W; females are XX, WX or WY; males are XY or YY). Its gonosomes are at an early stage of differentiation. The sex-determining locus on the sex chromosomes is flanked by two receptor tyrosine kinase genes, the Xmrk oncogene and its protooncogenic progenitor gene egfrb, which both delimit a region of about 0.6 centiMorgans. This situation should allow the positional cloning of the sex-determining gene (SD) of the platyfish. For this purpose, Bacterial Artificial Chromosome (BAC) contigs were assembled from a BAC library of XY males constructed in our laboratory, using the oncogene Xmrk, egfrb, as well as a Y-specific pseudogene called ps-criptY as starting points. The ps-criptY sequence was found to be closely linked to the SD gene, since no recombination was observed between SD and ps-criptY in more than 400 individuals tested. Two major BAC contigs for the X chromosome (about 2.5 Mb) and three major BAC contigs for the Y chromosome (about 3.5 Mb) were built up and analyzed by strategic sequencing. These are some of the largest contigs ever assembled for the sex chromosomes of a non-mammalian vertebrate species. The molecular analysis of the ps-criptY contig was the major objective of this work. The Y-specific ps-criptY contig has been extended over 1 Mb in this work with 58 identified molecular markers. Approximatively 700 kb of non-redundant sequences has been obtained from this contig by strategic sequencing. Numerous Y-linked markers from the contig including ps-criptY were also detected on the X chromosome. Nevertheless, major structural differences were observed between the X and Y chromosomes. Particularly, a large region, which is present at one copy on the X chromosome and contains several candidate genes, was found to be duplicated on the Y chromosome. Evidence for an inversion in the sex-determining region and for the Y-specific accumulation of a repeated sequence called XIR was also obtained. Such events might correspond to an initiation of differentiation between both types of gonosomes. Accumulation of transposable elements was also observed in the ps-criptY contig. A DNA transposable element, helitron, was isolated from the sex-determining region of X. maculatus. Three copies of helitron are located on the ps-criptY contig and one copy on the X-linked contig (helitron has roughly 15 copies per haploid genome). No in-frame stop codon, truncation or intron was found in these four copies, which present high nucleotide identities to each other. This suggests that helitron elements might be active or have been recently active in X. maculatus. A consensus open reading frame of helitron was also assembled from medaka (Oryzias latipes) genomic sequences. Two candidate genes from the ps-criptY contig are also located on the W chromosome in the X. maculatus Usumacinta strain (heterogamety). These markers show the relationship between the different types of gonosomes and allow to compare the male and female heterogameties in the platyfish. Several gene candidates were identified in the ps-criptY contig. However, some of them such as msh2, cript, igd and acr probably correspond to pseudogenes. Interestingly, a novel gene, called swimy, is exclusively expressed in spermatogonia of the adult testis. Swimy is a gene encoding a DNA-binding protein with several putative DNA-binding domains. The data suggest that swimy is a very promising candidate for the master SD gene. Another novel gene, which is called fredi and encodes a novel helix-turn-helix protein, is predominately expressed in the adult testis and currently under scrutiny. There is no doubt that the master SD gene of X. maculatus will be identified by positional cloning. Further molecular analysis of the contigs built in this work will shed new light on the molecular mechanism of sex determination and the evolution of sex chromosomes in fish.},
  subject      = {Platy},
  language  = {en}
}
@phdthesis{Stojic2005,
  author    = {Stojic, Jelena},
  title     = {Cloning and functional characterization of novel genes expressed preferentially in the human retina},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-13746},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2005},
  abstract  = {The human retina is a multi-layered neuronal tissue specialized for the reception and processing of visual information. The retina is composed of a great diversity of neuronal cell types including rod and cone photoreceptors, bipolar cells, ganglion cells, amacrine cells, horizontal cells and M{\"u}ller glia. In response to light, a coordinated series of molecular events, the so-called phototransduction cascade, is triggered in photoreceptor cells and the signals from the photoreceptors are further processed by the bipolar and ganglion cells to the higher centers of the brain. The retina as highly complex system may be greatly susceptible to genetic defects which can lead to a wide range of disease phenotypes. Therefore, isolation and characterisation of the genes active in the human retina will facilitate our deeper understanding of retinal physiology and mechanisms underlying retinal degeneration and provide novel candidates for the retinal disease genes. To identify novel genes that are specifically or predominantly expressed in the human retina, a cDNA library enriched for retina specific transcripts was generated using suppression subtractive hybridization (SSH) technique. In total, 1113 clones were randomly isolated from the retina SSH cDNA library and partially sequenced. On the basis of BLASTN algorithm analysis these clones were classified into four categories including those with I) significant homology to known human genes (766/1113), II) significant homology to partial transcripts and hypothetical gene predictions (162/1113), III) no homology to known mRNAs (149/1113), and IV) vector sequences and clones derived from mitochondrial genes (36/1113). After correcting for redundancy, category I represented 234 known human genes and category II a total of 92unknown transcripts. Clones from category I, were selected for expression analysis by RT-PCR in a great number of human tissues. This resulted in the identification of 16 genes which were expressed exclusively in the retina, 13 which were highly expressed in the retina compared to other tissues, 12 genes which were specifically expressed in neuronal tissues and 48 ubiquitously expressed genes. Thus, our expression analysis resulted in the identification of 29 genes exclusively or abundantly transcribed in the human retina. Of those, retina specific genes L25,L33, L35, L37, L38 and L40 were selected for further analysis. To characterize the complete mRNA sequences of these transcripts a full-length human retina cDNA library was constructed. The analysis of the L25 gene revealed three splicing variants of the ABCC5 gene, consequently named ABCC5_SV1 (SV1), ABCC5_SV2 (SV2) and ABCC5_SV3 (SV3).These isoforms comprise the first five exons of ABCC5 and additional novel exons named 5a, 5b and 5c, generated by differential exon usage. The determined lengths of the three transcripts are 2039 bp, 1962 bp, and 1887 bp in size, respectively. RT-PCR, real-time PCR and Northern blot analysis of ABCC5 as well as the isoforms SV1, SV2 and SV3demonstrated high levels of expression for all transcripts in the retina compared to other tissues. Analysis of their nucleotide sequences revealed that inclusion of exon 5a in splicing variant SV1 produced a frame shift and premature termination codon (PTC). Our data show that this splice variant is the target of nonsense mediated mRNA decay (NMD). This was shown by inhibition of protein synthesis with antibiotics puromycin and anisomycin in human cell lines A-RPE 19 and Y79. Our analysis resulted in an increase of the PTC containing transcript and a decrease of the ABCC5 transcript. Conversely, the amount of both transcripts (SV1 and ABCC5) returned to pre-treatment levels after removal of the inhibitors. Together, our results suggest that alternative splicing of the ubiquitously expressed ABCC5 gene in addition to NMD is involved in retina-specific transcriptional regulation of the mRNA level of ABCC5. In contrast, additional experiments demonstrated that the levels of expression ofSV2 and SV3 isoforms do not appear to influence ABCC5 transcription. Several of the cloned genes were selected for additional genotyping of single nucleotide polymorphisms (SNPs) in order to construct their SNP maps which are going to be used for future association studies of complex disease AMD. Thus, identification of novel retinal genes and their functional characterization will further our elucidation of retinal physiology in general and in the diseased state in particular, by providing candidate retinal disease genes.},
  subject      = {Netzhaut},
  language  = {en}
}
@phdthesis{Volkmann2004,
  author    = {Volkmann, Thorsten},
  title     = {Lattice gas models and simulations of epitaxial growth},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-13812},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2004},
  abstract  = {In this PhD thesis, we develop models for the numerical simulation of epitaxial crystal growth, as realized, e.g., in molecular beam epitaxy (MBE). The basic idea is to use a discrete lattice gas representation of the crystal structure, and to apply kinetic Monte Carlo (KMC) simulations for the description of the growth dynamics. The main advantage of the KMC approach is the possibility to account for atomistic details and at the same time cover MBE relevant time scales in the simulation. In chapter 1, we describe the principles of MBE, pointing out relevant physical processes and the influence of experimental control parameters. We discuss various methods used in the theoretical description of epitaxial growth. Subsequently, the underlying concepts of the KMC method and the lattice gas approach are presented. Important aspects concerning the design of a lattice gas model are considered, e.g. the solid-on-solid approximation or the choice of an appropriate lattice topology. A key element of any KMC simulation is the selection of allowed events and the evaluation of Arrhenius rates for thermally activated processes. We discuss simplifying schemes that are used to approximate the corresponding energy barriers if detailed knowledge about the barriers is not available. Finally, the efficient implementation of the MC kinetics using a rejection-free algorithm is described. In chapter 2, we present a solid-on-solid lattice gas model which aims at the description of II-VI(001) semiconductor surfaces like CdTe(001). The model accounts for the zincblende structure and the relevant surface reconstructions of Cd- and Te-terminated surfaces. Particles at the surface interact via anisotropic nearest and next nearest neighbor interactions, whereas interactions in the bulk are isotropic. The anisotropic surface interactions reflect known properties of CdTe(001) like the small energy difference between the c(2x2) and (2x1) vacancy structures of Cd-terminated surfaces. A key element of the model is the presence of additional Te atoms in a weakly bound Te* state, which is motivated by experimental observations of Te coverages exceeding one monolayer at low temperatures and high Te fluxes. The true mechanism of binding excess Te to the surface is still unclear. Here, we use a mean-field approach assuming a Te* reservoir with limited occupation. In chapter 3, we perform KMC simulations of atomic layer epitaxy (ALE) of CdTe(001). We study the self-regulation of the ALE growth rate and demonstrate how the interplay of the Te* reservoir occupation with the surface kinetics results in two different regimes: at high temperatures the growth rate is limited to one half layer of CdTe per ALE cycle, whereas at low enough temperatures each cycle adds a complete layer. The temperature where the transition between the two regimes occurs depends mainly on the particle fluxes. The temperature dependence of the growth rate and the flux dependence of the transition temperature are in good qualitative agreement with experimental results. Comparing the macroscopic activation energy for Te* desorption in our model with experimental values we find semiquantitative agreement. In chapter 4, we study the formation of nanostructures with alternating stripes during submonolayer heteroepitaxy of two different adsorbate species on a given substrate. We evaluate the influence of two mechanisms: kinetic segregation due to chemically induced diffusion barriers, and strain relaxation by alternating arrangement of the adsorbate species. KMC simulations of a simple cubic lattice gas with weak inter-species binding energy show that kinetic effects are sufficient to account for stripe formation during growth. The dependence of the stripe width on control parameters is investigated. We find an Arrhenius temperature dependence, in agreement with experimental investigations of phase separation in binary or ternary material systems. Canonical MC simulations show that the observed stripes are not stable under equilibrium conditions: the adsorbate species separate into very large domains. Off-lattice simulations which account for the lattice misfit of the involved particle species show that, under equilibrium conditions, the competition between binding and strain energy results in regular stripe patterns with a well-defined width depending on both misfit and binding energies. In KMC simulations, the stripe-formation and the experimentally reported ramification of adsorbate islands are reproduced. To clarify the origin of the island ramification, we investigate an enhanced lattice gas model whose parameters are fitted to match characteristic off-lattice diffusion barriers. The simulation results show that a satisfactory explanation of experimental observations within the lattice gas framework requires a detailed incorporation of long-range elastic interactions. In the appendix we discuss supplementary topics related to the lattice gas simulations in chapter 4.},
  subject      = {Kristallwachstum},
  language  = {en}
}
@phdthesis{Engelhardt2004,
  author    = {Engelhardt, Catherine Marie},
  title     = {Identification and characterisation of the Spred protein family},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-11456},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2004},
  abstract  = {The subject of this thesis was the cloning and the initial biochemical and functional characterisation of novel human proteins with an N-terminal Ena-VASP homology (EVH)-1 domain and a C-terminal Sprouty homologous region (SPR), which are related to the Drosophila AE33 protein. During the course of this work, three mouse homologues of the AE33 fly protein have been reported and termed Sprouty-related protein with an EVH-1 domain 1, 2 and 3 (Spred-1, -2, -3)(Wakioka et al, 2001; Kato et al, 2003). Spred-1, -2 and -3 are membrane associated substrates of receptor tyrosine kinases and they act as negative regulators of the Ras pathway during growth factor stimulation. As the Spred-family members seem to exert similar functions, the specific function of each member remains enigmatic. Therefore, we investigated the mRNA and protein expression patterns of the two murine protein family members Spred-1 and Spred-2 on the whole organ level. Furthermore, we focussed on the cellular localisation and the role of human and murine Spred-2 in the organism. The expression patterns of Spred-1 and Spred-2 differed markedly among various tissues and cell types. In mouse, Spred-1 is abundantly expressed in adult brain, cerebellum, and fetal tissues, whereas Spred-2 was ubiquitously expressed. In humans, Spred-2 was found to be strongly expressed in glandular epithelia and in invasive cytotrophoblasts, and at the subcellular level its immunoreactivity was associated with secretory vesicles and was found to colocalise with Rab11 GTPase. The new human Spred gene family was investigated in detail. Cloning of the fulllength form of human Spred-2 resulted in an 1254 bp coding sequence, corresponding to a 418 amino-acids protein. Immunoblotting with a set of affinitypurified antibodies confirmed the expression of a 47 kDa protein and suggested the presence of additional differently sized variants. Cloning of various shortened Spred- 2 mRNAs and identification of 2 additional human Spred genes (localised on different chromosomes) with their respective EST (expressed sequence tag) revealed that the new human Spred gene family displays extensive splicing, leading to the generation of short and long Spred proteins. All protein isoforms and splicing variants contain an EVH1-domain located at the N-terminus of the protein. The full-length forms ("a" forms) comprised the SPR, another functional domain localised at the C-terminus whereas the short variants (Spred-1b, 2 c-e, 3 c) lack the entire C-terminal SPR domain or part of it. The existence of short and long splicing variants of Spred-1, -2 and -3 revealed a common principle of organisation and splicing pattern in the Spred family. Functional analyses of the 5 cloned Spred-2 splicing variants revealed differential subcellular localisation and differential regulation of serum- and EGF- mediated ERK activation in HEK-293 cells. Taken together, these results indicate a highly specific expression pattern of Spred-1 and Spred-2 in various tissues suggesting a specific physiological role for the individual Spred isoform in these tissues. For example, Spred-2 appears to be involved in regulating secretory pathways. Furthermore, the human Spred family contains three genes, which are subject to extensive alternative splicing resulting in at least 8 different proteins with differential subcellular localisation and differential regulatory potential of the MAPK pathways during growth factor stimulation.},
  subject      = {Spred Protein},
  language  = {en}
}
@phdthesis{Graefe2005,
  author    = {Gr{\"a}fe, Stefanie},
  title     = {Laser-control of molecular dynamics},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-13388},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2005},
  abstract  = {In this work a new algorithm to determine quantum control fields from the instantaneous response of systems has been developed. The derived fields allow to establish a direct connection between the applied perturbation and the molecular dynamics. The principle is most easily illustrated in regarding a classical forced oscillator. A particle moving inside the respective potential is accelerated if an external field is applied acting in the same direction as its momentum (heating). In contrary, a deceleration is achieved by a field acting in the opposite direction as the momentum (cooling). Furthermore, when the particle reaches a classical turning point and then changes its direction, the sign of the field has to be changed to further drive the system in the desired way. The frequency of the field therefore is in resonance with the oscillator. This intuitively clear picture of a driven classical oscillator can be used for directing (or controlling) quantum mechanical wave packet motion. The efficiency of the instantaneous dynamics algorithm was demonstrated in treating various model problems, the population transfer in double well potentials, excitation and dissociation of selective modes, and the population transfer between electronic states. Although it was not tried to optimize the fields to gain higher yields, the control was found to be very efficient. Driving population transfer in a double well potential could be shown to take place with nearly 100\% efficiency. It was shown that selective dissociation within the electronic ground state of HOD can be performed by either maximizing a selected coordinate's differential momentum change or the energy absorption. Concerning the population transfer into excited electronic states, a direct comparison with common control algorithms as optimal control theory and genetic algorithms was accomplished using a one-dimensional representation of methyl iodide. The fields derived from the various control theories were effective in transferring population into the chosen target state but the underlying physical background of the derived optimal fields was not obvious to explain. The instantaneous dynamics algorithm allowed to establish a direct relation between the derived fields and the underlying molecular dynamics. Bound-to-bound transitions could be handled more effectively. This was demonstrated on the sodium dimer in a representation of 3 electronic states being initially in its vibronic ground state. The objective was to transfer population into a predefined excited state. Choosing the first or the second state as a target, the control fields exhibited quite different features. The pulse-structure is related to the excited state wave packet, moving in, and out of the Franck-Condon region. Changing the control objective, the derived control field performed pure electronic transitions on a fast time-scale via a two-step transition. Futhermore, orientational effects have been investigated. The overall-efficiency of the population transfer for differently oriented molecules was about 70 \% or more if applying a control field derived for a 45° orientation. Spectroscopic methods to gain information about the outcome of the control process have been investigated. It was shown that pump/probe femtosecond ionization spectroscopy is suited to monitor time-dependent molecular probability distributions. In particular, time-dependent photoelectron spectra are able to monitor the population in the various electronic states. In the last chapter a different possibility of controlling molecules was regarded by investigating molecular iodine with a setup similar to the STIRAP ("Stimulated Raman Adiabatic passage") scenario. The possibility to extend this technique to a fs-time scale was examined in theory as well as in experiments, the latter being performed by Dr. Torsten Siebert in the Kiefer group, University of W{\"u}rzburg. It was shown that off-resonant excitation with implementation of the pulses with a higher intensity of the Stokes pulse as compared to the pump pulse - describing a so-called f-STIRAP like configuration - was shown to effectively transfer population into excited ground-state vibrational levels. This was theoretically underlined by comparing the numerically exact coupling case with the adiabatic picture. The process was described to run in the vicinity of adibaticity. A new model explaining the process by the system's vector rotating around the dressed state vector will be adopted in future calculations. Altogether, a new promising algorithm to control dynamical processes based on the instantaneous response has been developed. Because the derived control fields have been shown to be very efficient in selectively influencing molecules, it is to be expected that farther reaching applications can be realized in future investigations.},
  subject      = {Laserstrahlung},
  language  = {en}
}
@phdthesis{Li2004,
  author    = {Li, Jie},
  title     = {Differential effects of neuromelanin and synthetic dopamine melanin on cell lines},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-13588},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2004},
  abstract  = {xxx},
  language  = {en}
}
@phdthesis{Hassel2005,
  author    = {Haßel, Sylke},
  title     = {Signal transduction via multiple BMP receptor complexes},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-13353},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2005},
  abstract  = {BMPs influence a variety of cellular processes. They have been shown to regulate proliferation, differentiation, migration and apoptosis and thus play central roles during developmental processes and tissue homeostasis. Ligand mediated signal transduction is transmitted via BMP type I and BMP type II receptors, both members of the serine/threonine kinase superfamily. The BMP receptor mediated signal transduction is not explored in detail. Therefore our aim was to address different aspects of BMP mediated signal transduction with main focus on BRII and its regulation. Due to the existence of two alternative splice variants, a long and a short form, the function of the two variants and the impact of the C-terminal extension are of general interest. Moreover, mutations in the BMPR2 gene were identified to be responsible for PPH, a autosomal dominant lung disease. In this thesis, BRII phosphorylation and signalling mediated by different receptor oligomers were investigated and multiple BRII associated proteins were identified. We could show that the oligomerization pattern of BMP receptors exhibits a higher degree of flexibility compared to other receptors of that superfamily. In the present work the BMP2 mediated signal transduction should be examined, depending on the receptor oligomerization pattern. Using kinase-deficient mutants, it could be demonstrated, that signalling via preformed BMP receptor complexes is mediated by the well characterized Smad1/5/8 pathway, whereas signalling initiated by BMP2 induced recruitment of the receptors activates the p38 pathway and leads to Alkaline Phosphatase production. To further study signalling events triggered directly from the BRII a proteomics-based screen for BRII associated proteins was performed. 53 associated proteins were found, the majority being signal transducing molecules, but in addition metabolic proteins, transcriptional regulators and others were identified. These proteins enable to gain a deeper insight in BMP mediated signalling. One of the interactors, the receptor tyrosine kinase c-kit, was characterized in more detail. It could be demonstrated, that BRII and c-kit form a complex in vitro and in vivo, and the interaction is enhanced upon BMP2 stimulation. 2D phosphopeptid mapping showed that BRII is phosphorylated at S757 upon activation of c-kit by SCF. Moreover, c-kit and its ligand SCF are modulating BMP2 pathways, by enhancing Smad1/5 phosphorylation, Smad-transcriptional activity, Alkaline Phosphatase production and expression of Cbfa1. All these pathways hint towards modulation of the osteoblast development via c-kit. Thus, we were able to develop a novel paradigm for the BMP2 meditated signalling. One of the initial triggers for BRII is the auto-phosphorylation of BRII. Here we analyze ligand-independent as well as ligand-dependent phosphorylation of BRII. Some phosphorylation sites in BRII were identified. The general phosphorylation occurs mostly on serines. S815, S818 and Y825 are identified targets of phosphorylation whose function is still unclear. However phosphorylation of S336 is demonstrated to be essential for BRII activation. The elucidation of BMP receptor phosphorylation and oligomerization as well as the impact of a number of BRII associated proteins (such as c-kit), demonstrated in this thesis that BMP signalling has to be regulated precisely on multiple levels. This can be useful for the development of selective signalling inhibitors for basic research and therapeutic approaches of PPH and other diseases.},
  subject      = {Knochen-Morphogenese-Proteine},
  language  = {en}
}
@phdthesis{Swiderek2005,
  author    = {Swiderek, Halina},
  title     = {Typing and genome comparison of Neisseria meningitidis by DNA-microarrays},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-13374},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2005},
  abstract  = {In the present thesis, two projects on the use of microarray technology for molecular epidemiology of Neisseria meningitidis have been followed. The first one evaluated microarrays based on polymorphism-directed oligonucleotide design for typing of N. meningitidis adopting the multilocus sequence typing (MLST) concept. The number of oligonucleotides needed to cover all known polymorphisms was much lower compared to the number needed if a tiling strategy would have been chosen. Initial experiments using oligonucleotides 28-32 nucleotides in length, revealed that the applied hybridisation protocols were highly specific. However, despite of several optimisation steps, the rate of misidentification of oligonucleotides remained >1.8\% in consecutive validation experiments using arrays representing the genetic diversity at three MLST loci. This finding led to the assumption that the high density of polymorphic sites and extensive GC-content variations at N. meningitidis MLST loci hindered the successful implementation of MLST microarrays based on polymorphism-directed oligonucleotide design. In the 1980s, the ET-15 clone emerged within the ST-11 complex of N. meningitidis. This new clone was associated with severe meningococcal disease and outbreaks world-wide. Therefore, the goal of the second project was to identify genetic differences between ET-15 strains and other ST-11 strains using whole genome microarray technology. Three genes encoding hypothetical proteins were identified to be present in all ET-15 strains but absent in other ST-11 strains. This finding together with unpublished observation from our group suggested that several genome alterations occurred before the clonal expansion of the ET-15 clone started. The role that these three genes play in the pathogenicity of the ET-15 clone is unclear. The genome comparisons revealed furthermore that studies of the ET-15 clone displayed approximately two-fold less gene content variation than ST-11 strains not belonging to the ET-15 clone. This finding is in accordance with the recent emergence and clonal expansion of the ET-15 variant.},
  subject      = {Neisseria meningitis},
  language  = {en}
}
@phdthesis{Joestingmeier2005,
  author    = {J{\"o}stingmeier, Martin},
  title     = {On the competition of superconductivity, antiferromagnetism and charge order in the high-Tc compounds},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-13036},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2005},
  abstract  = {Diese Arbeit l{\"a}ßt sich in zwei grobe Abschnitte gliedern. Der erste Teil umfaßt die Kapitel 1-3, in denen drei verschiedene Konzepte beschrieben werden, die zum Verst{\"a}ndis stark korrelierter Vielteilchen-Systeme dienen. Dies sind zun{\"a}chst einmal die SO(5)-Theorie in Kapitel 3, die den allgemeinen Rahmen vorgibt und auf der numerischen Seite die Stochastische Reihen Entwicklung (SSE) in Kapitel 1 und der Contractor Renormierungsgruppen Ansatz (CORE), s.Kapitel 2). Die zentrale Idee dieser Dissertationsschrift besteht darin, diese verschiedenen Konzepte zu kombinieren, um ein besseres Verst{\"a}ndnis der Hochtemperatursupraleiter zu erhalten. Im zweiten Teil dieser Arbeit (Kap. 4 und Kap. 5) werden die so gewonnenen Ergebnisse dargestellt. Die zentrale Idee dieser Arbeit, d.h. die Kombination der SO(5)-Theorie mit den F{\"a}higkeiten bosonischer Quanten-Monte-Carlo Verfahren und den {\"u}berlegungen der Renormierungsgruppe, hat sich sich am Beispiel der Physik der Hochtemperatur-Supraleiter als sehr tragf{\"a}hig erwiesen. Die numerischen Simulationen reproduzieren bei den behandelten Modelle eine Reihe wichtiger experimenteller Daten. Die Grundlage f{\"u}r eine k{\"u}nftige weitere schrittweise Erweiterung des Modells wurde so geschaffen. Eine offene Frage ist z.B. die Restaurierung der SO(5)-Symmetrie an einem multi-kritischen Punkt, wenn die l{\"a}ngerreichweitigen Wechselwirkungen mit in das Modell einbezogen sind.},
  subject      = {Hochtemperatursupraleitung},
  language  = {en}
}
@phdthesis{Patra2005,
  author    = {Patra, Amiya Kumar},
  title     = {Modulation of the NFAT signaling pathway by protein kinase B (PKB) ; a perspective study in the context of thymocyte development and T cell function},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-13315},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2005},
  abstract  = {To analyze the role of protein kinase B(PKB)on developmental and functional aspects of T cells, we have generated transgenic mouse lines expressing a constitutively active form of PKB (myrPKB) in early stages of T cell development.Peripheral CD4+ T cells from PKB tg mice are hyperreactive, more efficient in producing th1 and th2 cytokines and show faster and CD28 co-stimulation independent cell cycle progression.Interestingly PKB tg T cells are resistant to CsA treatment in proliferation and cytokine production.Further analysis show PKB tg CD4+ T cells have a drastically reduced nuclear translocation of NFAT proteins and this is due to a direct interaction between PKB and NFAT. To study whether the negative regulatiopn of NFATs by PKB affects T cell development, we analyzed double tg mice expressing both, a constitutively active version of calcineurin (dCam) and myrPKB. dCam tg mice have a severe block in thymocyte development at the DN3 stage.But in the dCam/PKB double tg mice this developmental block is significantly rescued.This rescue of thymocyte development by PKB is due to the expression of RAG1 and subsequent TCRb chain expression. CsA treatment of neonatal thymic lobes from dCam mice restores normal thymocyte development, indicating involvement of NFATs in the severe block in dCam thymocyte development.Confocal studies clearly established that compared to dCam DN cells there is a significant reduction in the nuclear levels of NFATc1 and NFATc3 in dCam/PKB cells.Downregulation of nuclear NFAT levels by myrPKB thus seems to be an essential parameter in dCam cells to proceed with normal differentiation. In summary, the data from PKB tg peripheral CD4+ T cells and dCam/PKB double tg thymocytes clearly establish PKB as an important modulator of T cell development and function and PKB as a novel negative regulator of NFAT activation.},
  subject      = {T-Lymphozyt},
  language  = {en}
}
@phdthesis{Muellner2004,
  author    = {M{\"u}llner, Antje},
  title     = {Breeding ecology and related life-history traits of the hoatzin, Opisthocomus hoazin, in a primary rainforest habitat},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-13239},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2004},
  abstract  = {The hoatzin (Opisthocomus hoazin) is an enigmatic bird that lives in the riparian lowlands of northern South America. Among its peculiar attributes are 1) microbial foregut fermentation, unique in birds, to convert plant cellulose in the foliage which it consumes into simple sugars, 2) an ongoing debate about the puzzling taxonomic position, although a relationship to the Cuculiformes appears likely, 3) adaptive wing claws in the young which are used for climbing, and 4) co-operative breeding behaviour. Despite the information available on digestive mode and taxonomy little has been published on its breeding biology and behaviour and until now almost all knowledge was based on a study in the savannah of Venezuela. This is the first detailed study of the hoatzin's nesting ecology in a rainforest habitat. From 1995-1998 and in 2000 I monitored a hoatzin population which consisted of approximately 700 individuals in an Amazonian rainforest in Ecuador situated in the Cuyabeno Wildlife Reserve (between 0°02' N, 76°0' W, 0°03' S, and 76°14' W). The area is composed of various black water lagoons and small rivers, flooded forests and terra firme forest. Primarily, I examined group composition and breeding pattern and success related to traits such as clutch and egg size, offspring sex ratio and the number of parents involved in a common breeding attempt. Apart from standardised observations and monitoring I took blood samples from chicks, which were later used for molecular sexing and for DNA fingerprints. Food plants were collected and determined and a rough habitat mapping was conducted. Since the impacts of boat tourism in the area became apparent I investigated the interactions of adult and young hoatzins with tourists and measured the plasma concentration of the hormone corticosterone in chicks as an indicator of stress. Each chapter has its own introduction to the specific topic and can be read independently. The main findings of this study are: The reproduction of the hoatzin was timed strictly following the bimodal rainy pattern in the area. There was only one breeding attempt per year. Only 18\% of breeding attempts ended successfully with at least one fledgling. Incubation started with the first egg laid and led to hatching asynchrony. In most cases only the A-chick survived and there is evidence for a brood reduction strategy. I observed egg size variation patterns both within the clutches and between the clutches. Approximately 80\% of breeding attempts were carried out with auxiliaries. Units with alloparentals had a higher breeding success than single pairs. The results indicate a trade-off between helping and group size. DNA band-sharing comparisons revealed the existence of joint-nests, where several females laid their eggs in one single nest. The clutches of these joint-nests suffered severe egg loss during all stages of incubation. Breeding success did not differ between single- and joint-nests. The primary offspring sex ratio was biased towards daughters. There was no differential mortality between the sexes until fledging. Individual breeding units employed an adaptive production of offspring of each sex according to their current group size. Rainforest tourism negatively influenced the survival and growth of young, not yet fledged hoatzins. In addition tourist-exposed young showed a stronger hormonal stress response than their conspecifics from undisturbed sites. In contrast, breeding adults appear to have habituated to tourist boats and exposure to observers.},
  subject      = {Hoatzins},
  language  = {en}
}
@phdthesis{Berkane2005,
  author    = {Berkane, Emir},
  title     = {Etude de l'interaction entre GpJ, une prot{\´e}ine du bact{\´e}riophage Lambda, et LamB, une prot{\´e}ine de la membrane externe des bact{\´e}ries gram-n{\´e}gatives},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-12889},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2005},
  abstract  = {La fixation du bact{\´e}riophage Lambda sur son r{\´e}cepteur cellulaire, LamB, est d{\^u}e {\`a} une prot{\´e}ine de sa queue appel{\´e}e GpJ. Le but des travaux est d'{\´e}tudier l'int{\´e}raction entre le bact{\´e}riophage Lambda et LamB {\`a} travers l'{\´e}tude du complexe entre LamB et GpJ exprim{\´e}e en prot{\´e}ine de fusion. Pour ce faire, deux prot{\´e}ines de fusion sont utilis{\´e}es : MBP-gpJ et HisgpJ. MBP-gpJ est une prot{\´e}ine de fusion entre la Maltose Binding Prot{\´e}ine et l'extr{\^e}mit{\´e} Cterminale de la prot{\´e}ine GpJ (r{\´e}sidu 684 {\`a} 1132), gr{\^a}cieusement fournie par le Pr. Charbit (Paris, France). Gr{\^a}ce {\`a} la Technique du Film Noir (BLM), il a {\´e}t{\´e} permis d'observer que MBP-gpJ, apr{\`e}s expression dans E.coli et purification, int{\´e}ragit gr{\^a}ce au fragment de GpJ avec l'extr{\^e}mit{\´e} extracellulaire de LamB. Cette int{\´e}raction se traduit par un blocage complet et r{\´e}versible des canaux de LamB sauvage, mais {\´e}galement de mutants: LamB de Shigella sonnei, LamB Y118G et LamB D4+D6+D9v. Afin d'obtenir des informations sur la liaison de LamB avec uniquement le fragment de GpJ sans la partie MBP, une autre prot{\´e}ine de fusion a {\´e}t{\´e} r{\´e}alis{\´e}e: His-GpJ. His-gpJ repr{\´e}sente l'extr{\^e}mit{\´e} C-terminale de GpJ (684-1132) en fusion avec un 6×Histidine-tag. Cette prot{\´e}ine est exprim{\´e}e sous forme de corps d'inclusion dans E.coli. Apr{\`e}s purification et renaturation, une prot{\´e}ine de nouveau soluble peut {\^e}tre obtenue. Lors d'exp{\´e}riences de Film Noir, His-gpJ int{\´e}ragit certes avec LamB, mais n'induit pas le blocage des canaux comme pr{\´e}cedemment observ{\´e} apr{\`e}s ajout de MBP-gpJ. En parall{\`e}le, la formation d'un complexe entre His-gpJ et LamB sauvage, ainsi que de mutants a pu {\^e}tre confirm{\´e}e au travers de travaux de SDS-PAGE et d'immunod{\´e}tection par la pr{\´e}sence de bandes de masse mol{\´e}culaire {\´e}lev{\´e}e. L'utilisation de mutants de LamB a par ailleurs permis d'essayer d'identifier la partie de LamB impliqu{\´e}e dans l'interaction avec le fragment C-terminal de GpJ, qui se r{\´e}v{\`e}le {\^e}tre diff{\´e}rente de celle de GpJ dans la queue du bact{\´e}riophage Lambda. Mots cl{\´e}s: bact{\´e}riophage Lambda, gpJ, LamB, technique du film noir (BLM), immunod{\´e}tection.},
  subject      = {Bakteriophage Lambda},
  language  = {en}
}
@phdthesis{Beck2005,
  author    = {Beck, Jan},
  title     = {The macroecology of Southeast-Asian hawkmoths (Lepidoptera: Sphingidae)},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-13001},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2005},
  abstract  = {This study investigates the abundance and geographic distribution of the hawkmoth species (Lepidoptera: Sphingidae) of Southeast-Asia and analyses the resulting patterns of biodiversity, biogeography and macroecology. Data on the distribution of species were retrieved from published and unpublished faunal lists and museum collections (in close cooperation with the Natural History Museum, London). Over 34,500 records of the global distribution of the 380 species that occur in Southeast-Asia (including New Guinea and the Solomon Islands) were used for a GIS-supported estimate of distributional ranges, which can be accessed at http://www.sphingidae-sea.biozentrum.uni-wuerzburg.de, an Internet site that also provides pictures of the species and checklists for 114 islands of the Malesian region. The abundance of species in local assemblages was assessed from nightly collections at artificial light sources. Using a compilation of own samples as well as published and unpublished data from other sources, local abundance data on 93 sites were used for analysis, covering 159 species or 17,676 specimens.},
  language  = {en}
}
@phdthesis{TrujilloVargas2005,
  author    = {Trujillo Vargas, Claudia Milena},
  title     = {Development of vaccines against allergic asthma using products derived from intracellular bacteria or helminths},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-12992},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2005},
  abstract  = {Die „Hygiene Hypothese" postuliert, dass der Kontakt mit Infektionserregern in der fr{\"u}hen Kindheit die Entwicklung von Th2-abh{\"a}ngigen allergischen Immunreaktionen verhindern kann, indem dadurch entweder eine vorrangig Th1-gerichtete Immunit{\"a}t etabliert wird oder alternativ die Bildung von regulatorischen T Zellen induziert wird. Basierend auf dieser Theorie zielte die vorliegende Arbeit darauf ab, Produkte von Mikroorganismen oder W{\"u}rmern als m{\"o}gliche Komponenten von Impfstoffen gegen Allergien zu testen. Im ersten Teil dieser Arbeit wurden lebende BCG, Hitze abget{\"o}tete BCG (hk-BCG), CpG und PPD, die alle als Th1 Adjuvantien bekannt sind, auf ihre Effektivit{\"a}t getestet, allergisches Asthma in der Maus zu unterdr{\"u}cken. Alle Adjuvantien konnten die durch Allergie induzierte Lungeneosinophilie, die Schleimproduktion in der Lunge und mit Ausnahme von PPD, die Lungen{\"u}berempfindlichkeit (AHR) unterdr{\"u}cken, wenn sie zusammen mit OVA/alum verabreicht wurden. Die Lungeneosinophilie konnte jedoch nicht in IL-12 oder IFN-gamma defizienten M{\"a}usen durch die Applikation von hk-BCG, CpG oder PPD verhindert werden. Interessanterweise waren jedoch lebende BCG in der Lage, die allergische Th2 Immunreaktion zu unterdr{\"u}cken. Ebenso war die Wirkung von lebendem BCG unabh{\"a}ngig vom IL-10, TLR-2, TLR-4 oder MyD88 vermittelten Signalweg. Wurden M{\"a}use, die mit den verschiedenen Adjuvantien zusammen mit OVA/alum geimpft wurden, einer zweiten Runde OVA/alum Sensibilisierung unterzogen, so konnten nur lebende und hk-BCG die Entwicklung der Entz{\"u}ndung in der Lunge effektiv unterdr{\"u}cken. Diese Wirkung konnte durch den adoptiven Transfer von CD4+ T Zellen auf naive M{\"a}use {\"u}bertragen werden. Zusammenfassend zeigen diese Daten, daß lebende BCG am effektivsten, gefolgt von hk-BCG, CpG und schließlich PPD allergische Th2 Immunreaktionen unterdr{\"u}cken konnten. Als n{\"a}chstes wurde untersucht, ob eine Impfung mit dendritischen Zellen (DC) die Entwicklung von Th2 Zellen durch die Induktion von allergenspezifischen Th1 Zellen verhindern kann. Die Applikation von OVA-gepulsten aus dem Knochenmark stammenden-dendritischen Zellen (BM-DC), die mit CpG in vitro stimuliert wurden, konnten die Lungeneosinophilie und Entz{\"u}ndung in den Atemwegen in OVA-immunisierten M{\"a}usen nicht reduzieren. OVA-spezifische IgG1 und IgE Antik{\"o}rpermengen im Serum waren ebenfalls nicht vermindert. Versuche mit OVA-gepulsten Langerhans-zellen (LC) f{\"u}hrten zu {\"a}hnlichen Ergebnissen wie mit BM-DC. Jedoch waren in M{\"a}usen, die mit CpG/OVA gepulsten BM-DC behandelt wurden, deutlich erh{\"o}hte Werte an OVA-spezifischen IgG2a Antik{\"o}rper im Serum nachzuweisen, was auf die Induktion einer allergenspezifischen Th1 Immunreaktion in vivo schließen l{\"a}ßt. Insgesamt zeigen die Ergebnisse aber, dass weder die Impfung mit OVA-gepulsten und CpG-stimulierten BM-DC noch mit OVA-gepulsten LC eine Verringerung der allergischen Th2 Immunreaktion in einem Mausmodell mit schwerem atopischem Asthma bewirkt. Im dritten Teil der Arbeit wurde NES, ein exkretorisches/sekretorisches Produkt des Helminthen Nippostrongylus brasiliensis, als ein neues m{\"o}gliches Adjuvant zur Unterdr{\"u}ckung allergischer Reaktionen untersucht. Die Applikation von NES zusammen mit OVA/alum inhibierte deutlich die Entwicklung der Lungeneosinophilie, Becherzellmetaplasie und Schleimproduktion in der Lunge sowie die Entwicklung der AHR. Das verwendete NES enthielt geringe Mengen an LPS, die diese Wirkung erkl{\"a}ren k{\"o}nnte. Allerdings war die Unterdr{\"u}ckung der Th2 Immunreaktion durch NES unabh{\"a}ngig von TLR-4 und konnte immer noch nachgewiesen werden, wenn LPS-depletiertes NES verwendet wurde. Schließlich konnte NES die OVA-induzierte Th2 Immunreaktion unabh{\"a}ngig von IL-10 und IFN-gamma reduzieren. Außerdem konnte der Verdau von NES mit Proteinase K oder eine Hitzebehandlung (kochen) den Th2-unterdr{\"u}ckenden Effekt nicht aufheben. Interessanterweise inhibierte NES in vivo eine OVA-spezifische Th2 Immunreaktion in Anwesenheit einer starken NES-spezifischen Th2 Reaktion. Zusammenfassend f{\"u}hren diese Ergebnisse zu dem Schluß, daß der Helminth N. brasiliensis Substanzen produziert, die die Entwicklung von allergischen Th2 Immunreaktionen beeinflussen. Diese Produkte und ihre Wirkmechanismen genauer zu charakterisieren, k{\"o}nnte zu sehr effektiven Adjuvantien f{\"u}hren, welche allergische Reaktionen unterdr{\"u}cken k{\"o}nnten. Die Ergebnisse dieser Arbeit k{\"o}nnten zuk{\"u}nftig dazu beitragen, effiziente Impfungen zu entwickeln, die Menschen vor der Entwicklung von allergischen Immunreaktionen sch{\"u}tzen.},
  subject      = {Bronchialasthma},
  language  = {en}
}
@phdthesis{Akimzhanov2005,
  author    = {Akimzhanov, Askar M.},
  title     = {Epigenetic repression of the NFATc1 transcription factor in human lymphomas},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-12921},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2005},
  abstract  = {We examined the regulation of NFATc1 in different lymphomas and observed an inversed correlation between the methylation status and expression of NFATc1. Our data demonstrate that aberrant DNA methylation associated with chromatin remodeling within nfatc1 locus is a major mechanism for the repression of NFATc1 expression, suggesting that the DNA methylation-mediated transcriptional silencing of NFATc1 may be a critical event in the tumorogenesis of ALCLs and cHLs. Furthermore, the DNA methylation of human nfatc1 promoter region could be used as a novel biomarker of tumor progression. Our results indicate a close link between the loss of immunoreceptor signaling and NFATc1 expression in human lymphomas. For both ALCLs and cHLs, defects in immunoreceptor signaling have been described which result in a loss of receptor-mediated gene expression programs (Schwering et al., 2003; Bonzheim et al., 2004; Marafioti et al., 2004). In T cells, one indicator gene of these programs appears to be the nfatc1 gene whose expression is controlled by TCR signals (Chuvpilo et al., 2002a). In contrast, in T cells NFATc1 expression is unaffected by TCR signals, and NFATc2 was found to be expressed at normal levels in ALCLs and cHLs (L.K., unpubl. data). Moreover, the activity of NF-kappaB factors which can bind to certain NFAT binding sites and share a distantly-related DNA binding domain with NFATs is strongly elevated in cHL cells (Bargou et al., 1997; Hinz et al., 2001; Hinz et al., 2002) suggesting that NFATs and NF-kappaBs exert very different effects on generation and maintenance of Hodgkin's lymhomas. However, it should be mentioned that in Burkitt's and further B cell lymphomas in which NFATc1 proteins are strongly expressed and controlled by receptor signals (Kondo et al., 2003), they could exert a promoting function in tumor development. The genes of p53 family members p63 and p73 are prominent examples for mammalian genes whose products can act both as oncoproteins and tumor suppressor genes (Hibi et al., 2000; Stiewe and Putzer, 2002), and it is likely that more genes exist which encode both tumor suppressors and oncoproteins. It remains to be shown whether the nfatc1 gene is one of them.},
  subject      = {Lymphom},
  language  = {en}
}
@phdthesis{Kittel2004,
  author    = {Kittel, Olaf},
  title     = {CP violation in production and decay of supersymmetric particles},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-12767},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2004},
  abstract  = {In dieser Dissertation untersuchen wir CP verletzende Effekte von MSSM-Phasen in Produktion und Zwei-Teilchen-Zerfaellen von Neutralinos, Charginos und Sfermionen. Fuer verschiedene supersymmetrische Prozesse definieren und berechnen wir CP-ungerade Asymmetrien, welche auf Spatprodukten basieren. Wir zeigen numerische Ergebnisse fuer Elektron-Positron-Kollisionen an einem zukuenftigen Linearbeschleuniger mit einer Energie von 500 - 800 GeV, hoher Luminositaet und longitudinal polarisierten Strahlen.},
  subject      = {Supersymmetrisches Teilchen},
  language  = {en}
}
@phdthesis{Deppisch2004,
  author    = {Deppisch, Frank},
  title     = {Towards a reconstruction of the SUSY seesaw model},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-12757},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2004},
  abstract  = {In this work, we studied in great detail how the unknown parameters of the SUSY seesaw model can be determined from measurements of observables at or below collider energies, namely rare flavor violating decays of leptons, slepton pair production processes at linear colliders and slepton mass differences. This is a challenging task as there is an intricate dependence of the observables on the unknown seesaw, light neutrino and mSUGRA parameters. In order to separate these different influences, we first considered two classes of seesaw models, namely quasi-degenerate and strongly hierarchical right-handed neutrinos. As a generalisation, we presented a method that can be used to reconstruct the high energy seesaw parameters, among them the heavy right-handed neutrino masses, from low energy observables alone.},
  subject      = {Supersymmetrie},
  language  = {en}
}
@phdthesis{Babocsi2005,
  author    = {Babocsi, Krisztina},
  title     = {Characterization of II-VI semiconductor nanostructures by low wavenumber raman- and four-wave-mixing spectroscopy},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-12551},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2005},
  abstract  = {Es ist bekannt, dass r{\"a}umlich eingeschr{\"a}nkte Ladungstr{\"a}ger in niederdimensionalen Halbleitern zur Verst{\"a}rkung optischer und elektronischer Eigenschaften solcher Nanostrukturen beitragen. Die Physik des "Quantum Confinements" ist trotz umfangreicher Nachforschungen noch immer nicht v{\"o}llig verstanden. Die vorliegende Arbeit beinhaltet eine qualitative Studie quasi-nulldimensionaler II-VI Halbleiter Nanostrukturen. Es wurden handels{\"u}bliche und w{\"a}rmebehandelte CdSxSe1-x Quantenpunkte (QDs) mittels linearer und nicht-linearer Spektroskopie untersucht. Im Rahmen nicht-resonanter Raman Spektroskopie wurden Schl{\"u}sseleigenschaften der QDs, wie z.B. der Durchmesser und die Gr{\"o}ßenverteilung, bestimmt. Die Anordnung der Energieniveaus in einer atom-{\"a}hnlichen Struktur hat die Verst{\"a}rkung der Intensit{\"a}t akustischer Phononen zur Folge, welche im Bulk nicht nachgewiesen werden k{\"o}nnen. In Nanokristallen sind nur zwei Sorten akustischer Vibrationen Raman-aktiv: Die kugelsymmetrischen (l = 0) und die quadrupolaren (l=2) Vibrationen, die durch linear polarisierte Laserpulse selektiv angeregt werden k{\"o}nnen. Die Gr{\"o}ße der QDs wurde durch Ber{\"u}cksichtigen der Abh{\"a}ngigkeit der Vibrationsfrequenz akustischer Phononen von dem Durchmesser des Nanokristalls berechnet. Die Gr{\"o}ßenverteilung der QDs ist aus dem normalisierten FWHM ("full width at half maximum") der symmetrischen Vibration bestimmt worden. Die Relaxationsprozesse in Quantenpunkten finden auf einer Pikosekundenskala statt, zu deren Untersuchung ultraschnelle Spektroskopiemethoden mit Laserpulsen im Femtosekundenbereich notwendig sind. Es wurden in einer Glasmatrix eingebettete CdS0.6Se0.4 QDs von 9.1 nm Durchmesser mittels Fs-VWM- und Fs-PPT-Spektroskopie untersucht. In beiden F{\"a}llen wurden zirkular polarisierte Fs-Laserpulse eingesetzt. Es ist gezeigt worden, dass die Auswahlregeln f{\"u}r die Polarisation sehr stark von der Symmetrie der Nanokristalle abh{\"a}ngig sind. Es ist gezeigt worden, dass die angeregten Nanokristalle der Symmetriegruppe C2v oder niedriger angeh{\"o}ren und der Nachweis einer hexagonalen Struktur der Nanokristalle wurde erbracht. Die G{\"u}ltigkeit des Vier-Niveau-Modells wurde ebenfalls nachgewiesen. Dieses Modell enth{\"a}lt einen Grundzustand, zwei Exzitonzust{\"a}nde und einen Biexzitonenzustand. Das Entstehen der VWM- und PPT-Signale in verbotenen Polarisationsgeometrien wurde durch das Auftreten starker Coulomb-Wechselwirkung zwischen Exzitonen, die sich in demselben QD befinden, und durch die niedrige Symmetrie der QDs erkl{\"a}rt. Aufgrund der quadratischen Abh{\"a}ngigkeit der Intensit{\"a}ten der VWM-Signale von der Intensit{\"a}t der PPT-Signale, konnten die Ergebnisse der VWM-Messungen durch PPT-Untersuchungen gepr{\"u}ft werden. Die Effizienz der Methode der zirkular polarisierten Fs-VWM-Spektroskopie wurde bei der Untersuchung von in einer Glasmatrix eingebetteten w{\"a}rmebehandelten CdSe Quantenpunkten noch einmal best{\"a}tigt. Die Aufmerksamkeit auf Nicht-Phonon-Relaxationsmechanismen des Grund- und angeregten Zustands des Exzitons gerichtet. Außerdem konnte die Abh{\"a}ngigkeit der Kristallasymmetrie von der Nanopartikelgr{\"o}ße und von den Wachstumsbedingungen abgesch{\"a}tzt werden. Es zeigte sich, dass qualitativ hochwertige Quantenpunkte am effizientesten durch lange Wachstumszeiten bei niedrigen Temperaturen hergestellt werden k{\"o}nnen. Dabei haben die Nanokristalle gen{\"u}gend Zeit f{\"u}r „Nukleation" und nehmen eine symmetrischere Form an. Außerdem ist es nachgewiesen worden, dass die Exzitonrelaxation sehr stark von den Coulomb-Wechselwirkungen zwischen den Ladungstr{\"a}gern abh{\"a}ngt. Die Relaxationsprozesse der Exzitonen werden sowohl durch die Auger Selbstionisation, als auch durch den anschließenden Einfang der Ladungstr{\"a}ger in tiefen Fallen (an der Quantenpunktoberfl{\"a}che und/oder in der dielektrischen Matrix) deutlich verlangsamt. Dadurch wird die Lebensdauer der Exzitonen deutlich verk{\"u}rzt und liegt im Pikosekundenbereich. Die Relaxation der Exzitonen von h{\"o}heren Energieniveaus in den Grundzustand erfolgt auch auf zwei Wegen: Am Anfang des Relaxationsprozesses (t31 ~ 200 fs) ist Auger-Thermalisierung der Ladungstr{\"a}ger f{\"u}r die Relaxation des Elektrons von seinem angeregten 1pe Zustand auf sein niedrigeres 1se Energieniveau verantwortlich. W{\"a}renddessen erfolgt die Relaxation des Lochs sehr schnell {\"u}ber sein dichtes Spektrum von Valenzbandzust{\"a}nden. Diesem Prozess folgt unmittelbar der Einfang der Ladungstr{\"a}ger in tiefen Fallen, die sich an der Nanokristall-Glasmatrix-Grenzfl{\"a}che befinden. Diese Fallen sind eine direkte Konsequenz der Asymmetrie des Nanokristalls: je zahlreicher und je tiefer die Fallen, desto h{\"o}her ist die Asymmetrie des Kristalls. Im Rahmen dieser Arbeit ist eine komplette Charakterisierung der in einer Glas- matrix eingebetteten CdSSe-Quantenpunkte gelungen. Die wichtigsten Eigenschaften, wie z.B. die Gr{\"o}ße und die Gr{\"o}ßenverteilung der Quantenpunkte, sind durch polarisierte Raman-Messungen bestimmt worden. Um ein komplettes Bild {\"u}ber die Nanokristalle zu bekommen, sind weitere nicht-lineare Spektroskopiemethoden eingesetzt worden. Polarisierte VWM Spektroskopie wurde zur Untersuchung verschiedener Quantenpunktensembles erfolgreich eingesetzt und daraus sind wertvolle Informationen {\"u}ber die Symmetrie der Nanokristalle gewonnen worden. Weiterhin sind die Exzitonrelaxationsmechanismen beschrieben worden, die die Verst{\"a}rkung der optischen nicht-linearen Eigenschaften und starke Coulomb-Wechselwirkungen zwischen Exzitonen erkl{\"a}ren. Durch die Untersuchung der Auswirkung verschiedener Wachstumsbedingungen auf die Symmetrie der QDs stellt diese Arbeit einen erg{\"a}nzenden Beitrag zu Herstellungsverfahren qualitativ hochwertiger Quantenpunkte dar.},
  subject      = {Zwei-Sechs-Halbleiter},
  language  = {en}
}
@phdthesis{Biswas2005,
  author    = {Biswas, Kajal},
  title     = {Analysis of Nitrogen starvation induced filamentous growth and characterization of putative essential genes in the human fungal pathogen, Candida albicans},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-11554},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2005},
  abstract  = {1. Zusammenfassung Candida albicans ist ein opportunistisch pathogener Hefepilz, der sowohl oberfl{\"a}chliche Infektionen der Schleimhaut als auch lebensbedrohliche systemische Infektionen hervorrufen kann. Obwohl die F{\"a}higkeit von C.albicans Infektionen auszul{\"o}sen weitgehend vom Immunstatus des Wirts abh{\"a}ngt, besitzt der Pilz doch auch spezifische Eigenschaften, die eine Kolonisierung, Disseminierung und Anpassung an unterschiedliche Wirtsnischen erm{\"o}glichen und ihn vom harmlosen Kommensalen zum gef{\"a}hrlichen Krankheitsserreger werden lassen. Unter bestimmten Umweltbedingungen geht C.albicans vom Wachstum als sprossende Hefe zum invasiven, filament{\"o}sen Wachstum {\"u}ber, das eine wichtige Rolle in der Pathogenit{\"a}t des Pilzes spielt. Stickstoffmangel ist eines der Signale, die das filament{\"o}se Wachstum in C.albicans induzieren, und die Kontrolle der Morphogenese durch die Verf{\"u}gbarkeit von Stickstoff wurde in dieser Arbeit detailliert untersucht. Ammonium ist f{\"u}r Hefepilze eine bevorzugte Stickstoffquelle, die {\"u}ber spezifische Transporter in die Zelle aufgenommen wird. In der vorliegenden Arbeit konnte gezeigt werden, dass C.albicans zwei Ammoniumpermeasen besitzt, deren Expression durch Stickstoffmangel induziert wird. W{\"a}hrend die Deletion von CaMEP1 oder CaMEP2 keinen Einfluss auf das Wachstum bei limitierenden Ammoniumkonzentrationen hatte, konnten \&\#61508;mep1 \&\#61508;mep2 Doppelmutanten bei Ammoniumkonzentrationen unter 5 mM nicht mehr wachsen. Im Gegensatz zu \&\#61508;mep1 Mutanten bildeten \&\#61508;mep2 Mutanten unter Stickstoffmangel keine Hyphen mehr und wuchsen ausschließlich in der Hefeform. CaMep2p hat also nicht nur eine Funktion als Ammoniumtransporter, sondern spielt auch eine Rolle bei der Induktion des filament{\"o}sen Wachstums. Weitere Experimente zeigten, dass CaMep2p ein weniger effizienter Ammoniumtransporter als CaMep1p ist, daf{\"u}r aber st{\"a}rker exprimiert wird, und dass dieser Unterschied wichtig f{\"u}r die Signalfunktion von CaMep2p ist. Durch Deletionsanalysen konnte bewiesen werden, dass die C-terminale, cytoplasmatische Dom{\"a}ne von CaMep2p essentiell f{\"u}r die Induktion des Hyphenwachstums ist, f{\"u}r den Ammoniumtransport jedoch nicht ben{\"o}tigt wird, und diese beiden Funktionen von CaMep2p daher voneinander getrennt werden k{\"o}nnen. In C.albicans gibt es mindestens zwei Signalwege die das filament{\"o}se Wachstum steuern, eine MAP-Kinase-Kaskade und einen cAMP-abh{\"a}ngigen Signalweg, die in den Transkriptionsfaktoren Cph1p bzw. Efg1p enden. Bei Inaktivierung des einen oder des anderen Signalwegs induziert Stickstoffmangel kein filament{\"o}ses Wachstum mehr. Ein hyperaktives CaMEP2 Allel konnte den filament{\"o}sen Wachstumsdefekt sowohl von \&\#61508;cph1 als auch \&\#61508;efg1 Mutanten aufheben, nicht jedoch den einer \&\#61508;cph1 \&\#61508;efg1 Doppelmutante oder einer Mutante, der das G-Protein Ras1p fehlte, das beide Signalwege aktiviert. Umgekehrt wurde der filament{\"o}se Wachstumsdefekt von \&\#61472;\&\#61508;mep2 Mutanten durch ein dominant-aktives RAS1 Allel bzw. durch die Zugabe von cAMP aufgehoben. Diese Ergebnisse deuten darauf hin, dass CaMep2p bei Stickstoffmangel sowohl den MAP-Kinase- als auch den cAMP-abh{\"a}ngigen Signalweg aktiviert, um filament{\"o}ses Wachstum zu induzieren. In gen{\"u}gend hohen Konzentrationen reprimierte Ammonium das filament{\"o}se Wachstum selbst wenn die Signalwege artifiziell aktiviert waren. Die bevorzugte Stickstoffquelle Ammonium ist deshalb ein Inhibitor der Morphogenese, der durch denselben Transporter in die Zelle aufgenommen wird, der bei Stickstoffmangel das filament{\"o}se Wachstum von C.albicans induziert. Obwohl ein genaues Verst{\"a}ndnis der Virulenzmechanismen von C.albicans auch neue Ans{\"a}tze zur Bek{\"a}mpfung von Infektionen durch diesen Pilz liefern kann, ist doch die Identifizierung und Charakterisierung von essentiellen Genen als potentielle Ziele f{\"u}r die Entwicklung neuer Antimykotika eine Strategie, die von der pharmazeutischen Industrie favorisiert wird. Aus diesem Grund wurden in Zusammenarbeit mit einem Industriepartner drei Gene von C.albicans ausgew{\"a}hlt, die in anderen Pilzen als essentiell beschrieben wurden, und im Rahmen dieser Arbeit funktionell charakterisiert. RAP1 codiert f{\"u}r das Repressor/Aktivator Protein 1, ein Transkriptionsfaktor und Telomerbindeprotein, das in der B{\"a}ckerhefe Saccharomyces cerevisiae essentiell ist. Die Deletion des RAP1 Gens in C.albicans beeintr{\"a}chtigte jedoch nicht die Lebensf{\"a}higkeit der Mutanten, so dass RAP1 kein vielversprechendes Ziel darstellt. CBF1 (centromere binding factor 1) ist in S.cerevisiae wichtig f{\"u}r die korrekte Chromosomenverteilung w{\"a}hrend der Mitose und außerdem auch f{\"u}r die transkriptionelle Aktivierung der Methioninbiosynthesegene; in den verwandten Hefen Kluyveromyces lactis und Candida glabrata ist CBF1 sogar essentiell. C.albicans \&\#61508;cbf1 Mutanten wiesen jedoch keinen erh{\"o}hten Chromosomenverlust auf, so dass CBF1 hier offensichtlich keine Rolle bei der Chromosomensegregation spielt. Allerdings waren die Mutanten auxotroph f{\"u}r schwefelhaltige Aminos{\"a}uren und generell stark im Wachstum beeintr{\"a}chtigt, was zeigte, dass Cbf1p f{\"u}r das normale Wachstum von C.albicans wichtig ist. YIL19 ist in S.cerevisiae ein essentielles Gen und hat eine Funktion bei der Reifung der 18S rRNA. YIL19 stellte sich auch in C.albicans als essentiell heraus. Konditionale Mutanten, in denen YIL19 durch induzierbare, FLP-vermittelte Rekombination aus dem Genom deletiert wurde, waren nicht lebensf{\"a}hig und akkumulierten rRNA Vorstufen. Durch diese Untersuchungen konnte gezeigt werden, dass YIL19 essentiell f{\"u}r diesen wichtigen zellul{\"a}ren Prozess und f{\"u}r die Lebensf{\"a}higkeit von C.albicans ist und sich m{\"o}glicherweise als Ziel f{\"u}r die Entwicklung antifungaler Substanzen eignet.},
  subject      = {Candida albicans},
  language  = {en}
}
@phdthesis{Papastathopoulos2005,
  author    = {Papastathopoulos, Evangelos},
  title     = {Adaptive control of electronic excitation utilizing ultrafast laser pulses},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-12533},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2005},
  abstract  = {The subject of this work has been the investigation of dynamical processes that occur during and after the interaction of matter with pulses of femtosecond laser radiation. The experiments presented here were performed in the gas phase and involve one atomic and several model molecular systems. Absorption of femtosecond laser radiation by these systems induces an electronic excitation, and subsequently their ionization, photofragmentation or isomerization. The specific adjustment of the excitation laser field properties offers the possibility to manipulate the induced electronic excitation and to influence the formation of the associated photoproducts. From the perspective of the employed spectroscopic methods, the development of photoelectron spectroscopy and its implementation in laser control experiments has been of particular interest in this thesis. This technique allows for a most direct and intuitive observation of electronic excitation dynamics in atomic as well as in complex polyatomic molecular systems. The propagation of an intermediate electronic transient state, associated to the formation of a particular photoproduct, can be interrogated by means of its correlation to a specific state of the atomic or molecular continuum. Such correlations involve the autoionization of the transient state, or by means of a second probe laser field, a structural correlation, as summarized by the Koopman's theorem (section 2.4.1). The technique of adaptive femtosecond quantum control has been the subject of development in our group for many years. The basic method, by which the temporal profile of near-infrared laser pulses at a central wavelength of 800 nm, can be adjusted, is a programmable femtosecond pulse-shaper that comprises of a zero dispersion compressor and a commercial liquid crystal modulator (LCD). This experimental arrangement was realized prior to this thesis and served as a starting point to extend the pulse-shaping technique to the ultraviolet spectral region. This technological development was realized for the purposes of the experiments presented in Chapter 5. It involves a combination of the LCD-pulse-shaper with frequency up-conversion techniques on the basis of producing specifically modulated laser pulses of central wavelength 266 nm. Furthermore, the optical method X-FROG had to be developed in order to characterize the often complex structure of generated ultraviolet pulses. In the adaptive control experiments presented in this work, the generated femtosecond laser pulses could be automatically adjusted by means of specifically addressing the 128 independent voltage parameters of the programmable liquid-crystal modulator. Additionally a machine learning algorithm was employed for the cause of defining laser pulse-shapes that delivered the desired (optimal) outcome in the investigated laser interaction processes. In Chapter 4, the technique of feedback-controlled femtosecond pulse shaping was combined with time-of-flight mass spectroscopy as well as photoelectron spectroscopy in order to investigate the multiphoton double ionization of atomic calcium. A pronounced absolute enhancement of the double ionization yield was obtained with optimized femtosecond laser pulses. On the basis of the measured photoelectron spectra and of the electron optimization experiments, a non-sequential process was found, which plays an important role in the formation of doubly charged Calcium ions. Then in Chapter 5, the dynamics following the pp* excitation of ethylene-like molecules were investigated. In this context, the model molecule stilbene was studied by means of femtosecond photoelectron spectroscopy. Due to the simplicity of its chemical structure, stilebene is one of the most famous models used in experimental as well as theoretical studies of isomerization dynamics. From the time-resolved experiments described in that chapter, new spectroscopic data involving the second excited electronic state S2 of the molecule were acquired. The second ethylenic product was the molecule tetrakis (dimethylamino) ethylene (TDMAE). Due to the presence of numerous lone pair electrons on the four dimethylamino groups, TDMAE exhibits a much more complex structure than stilbene. Nevertheless, previously reported studies on the dynamics of TDMAE provided vital information for planning and conducting a successful optimisation control experiment of the wavepacket propagation upon the (pp*) S1 excited potential surface of the molecule. Finally, in Chapter 6 the possibility of employing femtosecond laser pulses as an alternative method for activating a metallocene molecular catalyst was addressed. By means of an adaptive laser control scheme, an optimization experiment was realized. There, the target was the selective cleavage of one methyl-ligand of the model catalyst (Cp)^2Zr(CH3)^2, which induces a catalytic coordination position on the molecule. The spectroscopic studies presented in that chapter were performed in collaboration to the company BASF A.G. and constitute a proof-of principle attempt for a commercial application of the adaptive femtosecond quantum control technique.},
  subject      = {Ultrakurzer Lichtimpuls},
  language  = {en}
}
@phdthesis{Bechmann2004,
  author    = {Bechmann, Michael},
  title     = {Dynamics in quantum spin glass systems},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-12519},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2004},
  abstract  = {This thesis aims at a description of the equilibrium dynamics of quantum spin glass systems. To this end a generic fermionic SU(2), spin 1/2 spin glass model with infinite-range interactions is defined in the first part. The model is treated in the framework of imaginary-time Grassmann field theory along with the replica formalism. A dynamical two-step decoupling procedure, which retains the full time dependence of the (replica-symmetric) saddle point, is presented. As a main result, a set of highly coupled self-consistency equations for the spin-spin correlations can be formulated. Beyond the so-called spin-static approximation two complementary systematic approximation schemes are developed in order to render the occurring integration problem feasible. One of these methods restricts the quantum-spin dynamics to a manageable number of bosonic Matsubara frequencies. A sequence of improved approximants to some quantity can be obtained by gradually extending the set of employed discrete frequencies. Extrapolation of such a sequence yields an estimate of the full dynamical solution. The other method is based on a perturbative expansion of the self-consistency equations in terms of the dynamical correlations. In the second part these techniques are applied to the isotropic Heisenberg spin glass both on the Fock space (HSGF) and, exploiting the Popov-Fedotov trick, on the spin space (HSGS). The critical temperatures of the paramagnet to spin glass phase transitions are determined accurately. Compared to the spin-static results, the dynamics causes slight increases of T_c by about 3\% and 2\%, respectively. For the HSGS the specific heat C(T) is investigated in the paramagnetic phase and, by way of a perturbative method, below but close to T_c. The exact C(T)-curve is shown to exhibit a pronounced non-analyticity at T_c and, contradictory to recent reports by other authors, there is no indication of maximum above T_c. In the last part of this thesis the spin glass model is augmented with a nearest-neighbor hopping term on an infinite-dimensional cubic lattice. An extended self-consistency structure can be derived by combining the decoupling procedure with the dynamical CPA method. For the itinerant Ising spin glass numerous solutions within the spin-static approximation are presented both at finite and zero temperature. Systematic dynamical corrections to the spin-static phase diagram in the plane of temperature and hopping strength are calculated, and the location of the quantum critical point is determined.},
  subject      = {Spinglas},
  language  = {en}
}
@phdthesis{Flegel2005,
  author    = {Flegel, Michael L.},
  title     = {Constraint qualifications and stationarity concepts for mathematical programs with equilibrium constraints},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-12453},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2005},
  abstract  = {An exhaustive discussion of constraint qualifications (CQ) and stationarity concepts for mathematical programs with equilibrium constraints (MPEC) is presented. It is demonstrated that all but the weakest CQ, Guignard CQ, are too strong for a discussion of MPECs. Therefore, MPEC variants of all the standard CQs are introduced and investigated. A strongly stationary point (which is simply a KKT-point) is seen to be a necessary first order optimality condition only under the strongest CQs, MPEC-LICQ, MPEC-SMFCQ and Guignard CQ. Therefore a whole set of KKT-type conditions is investigated. A simple approach is given to acquire A-stationarity to be a necessary first order condition under MPEC-Guiganrd CQ. Finally, a whole chapter is devoted to investigating M-stationary, among the strongest stationarity concepts, second only to strong stationarity. It is shown to be a necessary first order condition under MPEC-Guignard CQ, the weakest known CQ for MPECs.},
  subject      = {Nichtlineare Optimierung},
  language  = {en}
}
@phdthesis{Schlirf2005,
  author    = {Schlirf, Michael},
  title     = {Revision and description of Keuper (Middle Ladinian to Rhaetian) invertebrate trace fossils from the southern part of the Germanic Basin and studies of related material},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-12288},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2005},
  abstract  = {The invertebrate trace fossils from the Keuper (Upper Triassic) of the southern part of the Germanic Basin are revised. The Keuper sediments of the Germanic Basin are predominantly composed of rocks representing various nonmarine environments dominated by red-bed facies. The W{\"u}rzburg Formation, the Stuttgart Formation, and the Hassberge Formation, all representing deposits of extended river systems, contain the richest ichnofauna. Trace fossil abundance is generally low and their occurrence is scattered. The studied material can be assigned to 28 ichnogenera, 38 ichnospecies, and 6 vernacular forms. Among the described trace fossils are one new ichnogenus and three new ichnospecies. Apart from the revision of the invertebrate trace fossils from the Keuper numerous related ichnotaxa from various localities and ages have been studied and revised. In the course of these studies several ichnotaxa are synonymised, lowered in rank, and new ichnogenera, subichnogenera, and ichnospecies are suggested. In addition, general guidelines for naming, and methodologies for studying invertebrate trace fossils are presented. The palaeoecology of three ichnocoenoses, one from the W{\"u}rzburg Formation and two from the Hassberge Formation in Lower Franconia are briefly discussed.},
  subject      = {Haßberge-Gebiet},
  language  = {en}
}
@phdthesis{Stey2004,
  author    = {Stey, Thomas Josef},
  title     = {Di(benzothiazol-2-yl)phosphane - Studies on a Janus Head Ligand -},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-12330},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2004},
  abstract  = {The design of ligands is one of the most important and simultaneously challenging fields of research in modern inorganic chemistry. The aim is to synthesise ligands that can serve as coordination units for a broad variety of metal fragments and different purposes. The ligands have to be very flexible concerning their donating behaviour and geometrical prerequisites in order to correspond to the required metal fragments.},
  subject      = {Phosphine},
  language  = {en}
}
@phdthesis{Dahnken2004,
  author    = {Dahnken, Christopher},
  title     = {Spectral properties of strongly correlated electron systems},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-12238},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2004},
  abstract  = {We investigate the single particle static and dynamic properties at zero temperature within the Hubbard an three-band-Hubbard model for the superconducting copper oxides. Based on the recently proposed self-energy functional approach (SFA) [M.Potthoff, Eur. Phys. J. B 32 429 (2003)], we present an extension of the cluster-perturbation theory (CPT) to systems with spontaneous broken symmetry. Our method accounts for both short-range correlations and long-range order. Short-range correlations are accurately taken into account via the exact diagonalization of finite clusters. Long-range order is described by variational optimization of a ficticious symmetry-breaking field. In comparison with related cluster methods, our approach is more flexible and, for a given cluster size, less demanding numerically, especially at zero temperature. An application of the method to the antiferromagnetic phase of the Hubbard model at half-filling shows good agreement with results from quantum Monte-Carlo calculations. We demonstrate that the variational extension of the cluster-perturbation theory is crucial to reproduce salient features of the single-particle spectrum of the insulating cuprates. Comparison of the dispersion of the low-energy excitations with recent experimental results of angular resolved photoemission spectroscopy (ARPES) allows us to fix a consistent parameter set for the one-band Hubbard model with an additional hopping parameter t' along the lattice diagonal. The doping dependence of the single-particle excitations is studied within the t-t-U Hubbard model with special emphasis on the electron doped compounds. We show, that the ARPES results on the band structure and the Fermi surface of Nd{2-x}Ce_xCuOCl_{4-\delta} are naturally obtained within the t-t-U Hubbard model without further need for readjustment or fitting of parameters, as proposed in recent theoretical considerations. We present a theory for the photon energy and polarization dependence of ARPES intensities from the CuO2 plane in the framework of strong correlation models. The importance of surface states for the observed experimental facts is considered. We show that for electric field vector in the CuO_2 plane the 'radiation characteristics' of the O 2p_{\sigma} and Cu 3d_{x^2-y^2} orbitals are strongly peaked along the CuO_2 plane, i.e. most photoelectrons are emitted at grazing angles. This suggests that surface states play an important role in the observed ARPES spectra, consistent with recent data from Sr_2CuCl_2O_2. We show that a combination of surface state dispersion and Fano resonance between surface state and the continuum of LEED-states may produce a precipitous drop in the observed photoelectron current as a function of in-plane momentum, which may well mimic a Fermi-surface crossing. This effect may explain the simultaneous 'observation' of a hole-like and an electron-like Fermi surfaces in Bi_2Sr_2CaCu_2O_{8+\delta} at different photon energies.},
  subject      = {Hochtemperatursupraleiter},
  language  = {en}
}
@phdthesis{Eckl2004,
  author    = {Eckl, Thomas},
  title     = {Phenomenological phase-fluctuation model for the underdoped cuprates},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-12115},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2004},
  abstract  = {In this thesis, a phenomenological phase-fluctuation model for the pseudogap regime of the underdoped cuprates was discussed. The key idea of the phase-fluctuation scenario in the high-T_c superconductors is the notion that the pseudogap observed in a wide variety of experiments arises from phase fluctuations of the superconducting gap. In this scenario, below a mean-field temperature scale T_c^{MF}, a d_{x^2-y^2}-wave gap amplitude is assumed to develop. However, the superconducting transition is suppressed to a considerably lower transition temperature T_c by phase fluctuations. In the intermediate temperature regime between T_c^{MF} and T_c, phase fluctuations of the superconducting order parameter give rise to the pseudogap phenomena. The phenomenological phase-fluctuation model discussed in this thesis consists of a two-dimensional BCS-like Hamiltonian where the phase of the pairing-amplitude is free to fluctuate. The fluctuations of the phase were treated by a Monte Carlo simulation of a classical XY model. First, the density of states was calculated. The quasiparticle tunneling conductance (dI/dV) obtained from our phenomenological phase fluctuation model was able to reproduce characteristic and salient features of recent scanning-tunneling studies of Bi2212 and Bi2201 suggesting that the pseudogap behavior observed in these experiments arises from phase fluctuations of the d_{x^2-y^2}-wave pairing gap. In calculating the single-particle spectral weight, we were further able to show how phase fluctuations influence the experimentally observed quasiparticle spectra in detail. In particular the disappearance of the BCS-Bogoliubov quasiparticle band at T_c and the change from a more V-like superconducting gap to a rather U-like pseudogap above T_c can be explained in a consistent way by assuming that the low-energy pseudogap in the underdoped cuprates is due to phase fluctuations of a local d_{x^2-y^2}-wave pairing gap with fixed magnitude. Furthermore, phase fluctuations can explain why the pseudogap starts closing from the nodal points, whereas it rather fills in along the anti-nodal directions and they can also account for the characteristic temperature dependence of the superconducting (pi,0)-photoemission-peak. Next, we have shown that the "violation" of the low-frequency optical sum rule recently observed in the SC state of underdoped Bi2212, which is associated with a reduction of kinetic energy, can be related to the role of phase fluctuations. The decrease in kinetic energy is due to the sharpening of the quasiparticle peaks close to the superconducting transition at T_c == T_{KT}, where the phase correlation length xi diverges. A detailed analysis of the temperature and frequency dependence of the optical conductivity sigma(omega)=sigma_1(omega)+i sigma_2(omega) revealed a superconducting scaling of sigma_2(omega), which starts already above T_c, exactly as observed in high-frequency microwave conductivity experiments on Bi2212. On the other hand, our model was only able to account for the characteristic peak, which is observed in sigma_1(omega) close to the superconducting transition, after the inclusion of an additional marginal-Fermi-liquid scattering-rate in the optical conductivity formula. Finally, we calculated the static uniform diamagnetic susceptibility. It turned out that the precursor effects of the fluctuating diamagnetism above T_c are very small and limited to temperatures close to T_c in a phase-fluctuation scenario of the pseudogap. Instead, the temperature dependence of the uniform static magnetic susceptibility is dominated by the Pauli spin susceptibility, which displayed a very characteristic temperature dependence, independent of the details of the gap function used in our model. This temperature dependence is qualitatively very similar to the experimentally observed change of the Knight-shift as a function of temperature in underdoped Bi2212.},
  subject      = {Hochtemperatursupraleiter},
  language  = {en}
}
@phdthesis{Szeghalmi2005,
  author    = {Szeghalmi, Adriana Viorica},
  title     = {The ground and excited state molecular structure of model systems undergoing photochemical processes and the characterization of active agents by means of vibrational spectroscopy and theoretical calculations},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-11961},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2005},
  abstract  = {The present thesis reports about vibrational and quantum chemical investigations on model systems undergoing photochemical processes and pharmaceutically active compounds, respectively. Infrared (IR) and Raman spectroscopy were applied for the characterization of the ground state molecular structure. Moreover, resonance Raman (RR) spectra contain additional information about the resonantly enhanced excited state molecular structure. A quantitative resonance Raman intensity analysis in conjunction with the simultaneous simulation of the absorption spectra by means of time-dependent propagation methods was accomplished in order to extract valuable information about the excited state molecular structures of the investigated systems. Surface enhanced Raman scattering (SERS) allows one to determine the interaction and adsorption site of active agents on a metal substrate. Furthermore, density functional theory (DFT) and potential energy distribution (PED) calculations were carried out for an exact assignment of the vibrational spectra. Complete active space self consistent field (CASSCF) and configuration interaction (CI) calculations for some model systems were also performed to assess the experimental results on the excited state potential surfaces. The fundamentals of resonance Raman spectroscopy are treated in detail, describing the physical processes and emphasizing the theoretical methodologies which allow one to obtain the information about the resonantly excited state via an RR intensity analysis. The Brownian oscillator model to determine the solvent reorganization energy is briefly presented. Furthermore, the SERS enhancement mechanisms and selection rules to determine the orientation of the molecules adsorbed on the metal substrate are discussed. The Hartree-Fock approach to calculate the ground state geometry is expatiated, and the basic characteristics of the CI and CASSCF calculations are specified. The chapter ends with a short description of the DFT calculations. Chapter 4 deals with the investigation of the excited state intramolecular proton transfer of the model system, 1-hydroxy-2-acetonaphthone (HAN). The vibrations showing the highest displacement parameters correspond to stretching and in-plane deformation modes of the naphthalene ring and the conjugated carbonyl group, while the OH stretching mode exhibits no observable enhancement. The cooperative effect of the skeletal vibrations reduces the distance between the carbonyl and hydroxyl oxygen atoms in accordance with a general electron density redistribution. Hence, the leading force in the proton transfer process is the increase in electron density on the carbonyl group and the decrease of the negative charge on the hydroxyl oxygen. In chapter 5 the structural and vibrational characteristics of the organic mixed valence system N,N,N',N'-tetraphenylphenylenediamine radical cation (1+) are discussed. The resonance Raman measurements showed that at least eight vibrational modes are strongly coupled to the optical charge transfer process in (1+). These Franck-Condon active modes were assigned to symmetric vibrations. The most enhanced band corresponds to the symmetric stretching mode along the N-phenylene-N unit and exhibits the largest vibrational reorganization energy. Nevertheless, symmetric stretching modes of the phenylene and phenyl units as well as deformation modes are also coupled to the electronic process. The total vibrational reorganization energy of these symmetrical modes is dominant, while the solvent induced broadening and reorganization energy are found to be small. Hence, (1+) adopts a symmetrical delocalized Robin-Day Class III structure in the ground state. Chapter 6 reports about a vibrational spectroscopic investigation of a model organic photorefractive thiophene derivative, 2-(N,N-diethylamino)-5-(2',2'-dicyanovinyl)-thiophene. The geometry of the first excited state were optimized and the FC parameters were calculated using the configuration interaction with single excitations method. These calculations show that the contribution of the zwitterionic structure to the excited state is significantly higher than in the ground state. The resonance Raman spectra indicate that several stretching modes along the bonds connecting the donor and acceptor moieties as well as the S-C stretching vibrations are enhanced. Chapter 7 presents the vibrational analysis of an aziridinyl tripeptide, a cysteine protease inhibitor active drug. The vibrational analysis reveals stronger H-bonding of the aziridine NH unit in the solid state of the aziridinyl tripeptide than in the liquid electrophilic building block, indicating medium strong intermolecular H-bond interactions in the crystal unit. The amide hydrogen atoms of the aziridinyl tripeptide are involved in weaker H-bonds than in an epoxide analogon. Furthermore, the characteristic vibrational modes of the peptide backbone were discussed. Chapter 8 reports on the adsorption mechanism of two related anti-leukemia active agents, 6-mercaptopurine (6MP) and 6-mercaptopurine-ribose (6MPR) on a silver colloid. Both molecules adsorb through the N1 and possibly S atom on the metal surface under basic conditions. The SERS spectra recorded for acidic pH values showed that the ribose derivative exhibits a different adsorption behavior compared to the free base. 6MP probably adsorbs on the silver sol through the N9 and N3 atoms, while 6MPR interacts with the surface via the N7 and probably S atoms. Around critical biological concentrations and pH values i.e. at low concentrations and almost neutral condition (pH 7-9), 6MPR interacts with the substrate through both N7 and N1 atoms, possibly forming two differently adsorbed species, while for 6MP only the species adsorbed via N1 was evidenced.},
  subject      = {Photochemie},
  language  = {en}
}