@phdthesis{Werner2014,
  author    = {Werner, Katharina Julia},
  title     = {Adipose Tissue Engineering - In vitro Development of a subcutaneous fat layer and a vascularized adipose tissue construct utilizing extracellular matrix structures},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-104676},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2014},
  abstract  = {Each year millions of plastic and reconstructive procedures are performed to regenerate soft tissue defects after, for example, traumata, deep burns or tumor resections. Tissue engineered adipose tissue grafts are a promising alternative to autologous fat transfer or synthetic implants to meet this demand for adipose tissue. Strategies of tissue engineering, especially the use of cell carriers, provide an environment for better cell survival, an easier positioning and supplemented with the appropriate conditions a faster vascularization in vivo. To successfully engineer an adipose tissue substitute for clinical use, it is crucial to know the actual intended application. In some areas, like the upper and lower extremities, only a thin subcutaneous fat layer is needed and in others, large volumes of vascularized fat grafts are more desirable. The use and interplay of stem cells and selected scaffolds were investigated and provide now a basis for the generation of fitted and suitable substitutes in two different application areas. Complex injuries of the upper and lower extremities, in many cases, lead to excessive scarring. Due to severe damage to the subcutaneous fat layer, a common sequela is adhesion formation to mobile structures like tendons, nerves, and blood vessels resulting in restricted motion and disabling pain [Moor 1996, McHugh 1997]. In order to generate a subcutaneous fat layer to cushion scarred tissue after substantial burns or injuries, different collagen matrices were tested for clinical handling and the ability to support adipogenesis. When testing five different collagen matrices, PermacolTM and StratticeTM showed promising characteristics; additionally both possess the clinical approval. Under culture conditions, only PermacolTM, a cross-linked collagen matrix, exhibited an excellent long-term stability. Ranking nearly on the same level was StratticeTM, a non-cross-linked dermal scaffold; it only exhibited a slight shrinkage. All other scaffolds tested were severely compromised in stability under culture conditions. Engineering a subcutaneous fat layer, a construct would be desirable with a thin layer of emerging fat for cushioning on one side, and a non-seeded other side for cell migration and host integration. With PermacolTM and StratticeTM, it was possible to produce constructs with ASC (adipose derived stem cells) seeded on one side, which could be adipogenically differentiated. Additionally, the thickness of the cell layer could be varied. Thereby, it becomes possible to adjust the thickness of the construct to the surrounding tissue. In order to reduce the pre-implantation time ex vivo and the costs, the culture time was varied by testing different induction protocols. An adipogenic induction period of only four days was demonstrated to be sufficient to obtain a substantial adipogenic differentiation of the applied ASC. Thus, seeded with ASC, PermacolTM and StratticeTM are suitable scaffolds to engineer subcutaneous fat layers for reconstruction of the upper and lower extremities, as they support adipogenesis and are appropriately thin, and therefore would not compromise the cosmesis. For the engineering of large-volume adipose tissue, adequate vascularization still represents a major challenge. With the objective to engineer vascularized fat pads, it is important to consider the slow kinetics of revascularization in vivo. Therefore, a decellularized porcine jejunum with pre-existing vascular structures and pedicles to connect to the host vasculature or the circulation of a bioreactor system was used. In a first step, the ability of a small decellularized jejunal section was tested for cell adhesion and for supporting adipogenic differentiation of hASC mono-cultures. Cell adhesion and adipogenic maturation of ASC seeded on the jejunal material was verified through histological and molecular analysis. After the successful mono-culture, the goal was to establish a MVEC (microvascular endothelial cells) and ASC co-culture; suitable culture conditions had to be found, which support the viability of both cell types and do not interfere with the adipogenic differentiation. After the elimination of EGF (epidermal growth factor) from the co-culture medium, substantial adipogenic maturation was observed. In the next step, a large jejunal segment (length 8 cm), with its pre-existing vascular structures and arterial/venous pedicles, was connected to the supply system of a custom-made bioreactor. After successful reseeding the vascular structure with endothelial cells, the lumen was seeded with ASC which were then adipogenically induced. Histological and molecular examinations confirmed adipogenic maturation and the existence of seeded vessels within the engineered construct. Noteworthily, a co-localization of adipogenically differentiating ASC and endothelial cells in vascular networks could be observed. So, for the first time a vascularized fat construct was developed in vitro, based on the use of a decellularized porcine jejunum. As this engineered construct can be connected to a supply system or even to a patient vasculature, it is versatile in use, for example, as transplant in plastic and reconstruction surgery, as model in basic research or as an in vitro drug testing system. To summarize, in this work a promising substitute for subcutaneous fat layer reconstruction, in the upper and lower extremities, was developed, and the first, as far as reported, in vitro generated adipose tissue construct with integrated vascular networks was successfully engineered.},
  subject      = {Tissue Engineering},
  language  = {en}
}
@article{VottelerCarvajalBerrioPudlasetal.2012,
  author    = {Votteler, Miriam and Carvajal Berrio, Daniel A. and Pudlas, Marieke and Walles, Heike and Schenke-Layland, Katja},
  title     = {Non-contact, Label-free Monitoring of Cells and Extracellular Matrix using Raman Spectroscopy},
  series = {Journal of Visual Expression},
  volume    = {63},
  journal   = {Journal of Visual Expression},
  number    = {e3977},
  doi       = {10.3791/3977},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-124569},
  year      = {2012},
  abstract  = {Non-destructive, non-contact and label-free technologies to monitor cell and tissue cultures are needed in the field of biomedical research.1-5 However, currently available routine methods require processing steps and alter sample integrity. Raman spectroscopy is a fast method that enables the measurement of biological samples without the need for further processing steps. This laser-based technology detects the inelastic scattering of monochromatic light.6 As every chemical vibration is assigned to a specific Raman band (wavenumber in cm-1), each biological sample features a typical spectral pattern due to their inherent biochemical composition.7-9 Within Raman spectra, the peak intensities correlate with the amount of the present molecular bonds.1 Similarities and differences of the spectral data sets can be detected by employing a multivariate analysis (e.g. principal component analysis (PCA)).10 Here, we perform Raman spectroscopy of living cells and native tissues. Cells are either seeded on glass bottom dishes or kept in suspension under normal cell culture conditions (37 °C, 5\% CO2) before measurement. Native tissues are dissected and stored in phosphate buffered saline (PBS) at 4 °C prior measurements. Depending on our experimental set up, we then either focused on the cell nucleus or extracellular matrix (ECM) proteins such as elastin and collagen. For all studies, a minimum of 30 cells or 30 random points of interest within the ECM are measured. Data processing steps included background subtraction and normalization.},
  language  = {en}
}
@phdthesis{Starke2007,
  author    = {Starke, Josefine},
  title     = {Dynamik, Biomechanik und Plastizit{\"a}t des Aktinzytoskeletts in migrierenden B16/F1 GFP-Aktin Melanomzellen in 2D und 3D extrazellul{\"a}rer Matrix},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-25689},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2007},
  abstract  = {Die Anpassung des Aktinzytoskeletts an extrazellul{\"a}re Gewebsstrukturen ist Voraussetzung f{\"u}r die Interaktion mit der extrazellul{\"a}ren Matrix und f{\"u}r die Zellbewegung, einschließlich der Invasion und Metastasierung von Tumorzellen. Wir untersuchten bei invasiven B16/F1 GFP-Aktin Mausmelanomzellen, ob und wie sich Zellform, Art und Effizienz der Bewegung an physikalisch unterschiedlich beschaffene kollagen{\"o}se Umgebungen anpassen: 1) mit Kollagen-Monomeren beschichtete 2D Objekttr{\"a}ger, 2) 2D Oberfl{\"a}che einer fibrill{\"a}ren Kollagenmatrix und 3) Zellen, die in einer 3D Kollagenmatrix eingebettet waren. Zur Darstellung des Aktinzytoskeletts wurden Zellen eingesetzt, die GFP-Aktin Fusionsprotein exprimierten, und mittels Zeitraffer-Videomikroskopie und Konfokalmikroskopie untersucht. Im direkten Vergleich waren Struktur und Dynamik des Aktinzytoskelett wie auch Zellform und Art der Migration unterschiedlich in den verschiedenen Umgebungen. Auf 2D planer Oberfl{\"a}che erfolgte eine rasche Adh{\"a}sion und Abflachung der Zellen (Spreading) mit nachfolgender Migration mit Bildung fokaler Adh{\"a}sionszonen, in die kabelartige Aktinstrukturen (Stress fibers) einstrahlten. Dagegen entwickelte sich in 3D Kollagenmatrices eine spindelf{\"o}rmige, fibroblasten{\"a}hnliche Zellform (mesenchymal) mit zylindrischen fingerf{\"o}rmigen vorderen Pseudopodien, die Zug der Zelle nach vorne bewirken und hochdynamisches polymeres Aktin, nicht jedoch Stress Fibers enthielten. Eine {\"a}hnliche Zellform und Struktur des Zytoskeletts entwickelte sich in Zellen auf 2D fibrill{\"a}rem Kollagen. Die Kontaktfindung und Migrationseffizienz auf oder in fibrill{\"a}ren Matrices war im Vergleich zu 2D kollagenbeschichteter Oberfl{\"a}che erschwert, die Migrationseffizienz verringert. In Kontrollversuchen wurden Migration und polarisierte Bildung von Aktindynamik durch Inhibitoren des Aktinzytoskeletts (Cytochalasin D, Latrunculin B, Jasplakinolide) stark gehemmt. Diese Befunde zeigen , dass die Struktur und Dynamik des Aktinzytoskeletts sowie die Art der Migration in Tumorzellen st{\"a}rker als bisher angenommen durch die umgebende Kollagenstruktur bestimmt wird. W{\"a}hrend 3D Kollagenmatrices in vivo {\"a}hnliche bipolare Zytoskelettstruktur f{\"o}rdern, m{\"u}ssen Abflachung der Zellen mit Bildung von Stress Fibers als spezifische Charakteristika von 2D Modellen angesehen werden.},
  subject      = {Aktin},
  language  = {de}
}
@phdthesis{Roehrig2015,
  author    = {R{\"o}hrig, Florian},
  title     = {Verbesserung der Medikamenteneinbringung in solide Tumoren durch Modifikation der extrazellul{\"a}ren Matrix},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-117381},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2015},
  abstract  = {Bei der Behandlung solider Tumoren spielen systemisch verabreichte Chemotherapeutika eine wich- tige Rolle. Allerdings akkumulieren diese Therapeutika besser in normalem Gewebe als in Tumoren. Als Ursache f{\"u}r diesen unzureichenden Transport von Medikamenten in den Tumor wurde bisher vor allem die dysfunktionale Tumorvaskulatur diskutiert. Diese befindet sich in einem chaotischen und unreifen Zustand ohne ausreichende Bedeckung der Gef{\"a}ße mit stabilisierenden Perizyten. Aus dem Zustand der Vaskulatur resultierend erreichen Medikamente den Tumor nur in geringem Ausmaß und werden dort heterogen verteilt. Als Grund f{\"u}r den Zustand der Vaskulatur wur- de ein großer {\"U}berschuss an pro-angiogenetischen Faktoren im Tumor ausgemacht. Durch eine anti-angiogenetische Behandlung konnte in pr{\"a}klinischen Modellen f{\"u}r einen gewissen Zeitraum die Tumorvaskulatur „normalisiert" werden. Dies zeichnete sich vor allem durch Ver{\"a}nderung von zwei wichtigen Parametern f{\"u}r die Medikamenteneinbringung aus: zum Einen kommt es zu einer Reduktion der Gef{\"a}ßdichte. Zum Anderen zu einer Reifung der Blutgef{\"a}ße. In einem Teil von Pati- enten scheint dabei der Effekt der Gef{\"a}ßverbesserung zu {\"u}berwiegen und es kann eine verbesserte Perfusion detektiert werden. Mutmaßlich f{\"u}hrt dies auch zu einer verbesserten Einbringung von Therapeutika in den Tumor und so zu einer erh{\"o}hten Effizienz der Therapie. In einem weiteren Teil der Patienten scheint jedoch der Effekt der Gef{\"a}ßreduktion zu {\"u}berwiegen und die detektierte Perfusion im Tumor wird durch die Behandlung verringert. Das in dieser Arbeit verwendete MT6-Fibrosarkom-Modell reagierte auf eine anti-angiogenetische Therapie nicht mit einer sonst in murinen Modellen beobachteten Wachstumsreduktion. Die- se erm{\"o}glichte eine so bisher nicht m{\"o}gliche Untersuchung der sekund{\"a}ren Effekte einer anti- angiogenetischen Therapie wie die Medikamenteneinbringung in den Tumor. Die Vaskulatur in MT6-Tumoren zeigte dabei nach einer anti-angiogenetischen Vorbehandlung, die erwarteten Merk-male einer „normalisierten" Vaskulatur wie eine Reduktion der Gef{\"a}ßdichte bei gleichzeitiger Rei- fung der verbleibenden Gef{\"a}ße. Dies f{\"u}hrte jedoch nicht zu einer verbesserten Effizienz einer subsequenten Chemotherapie. Durch Vergleich mit einem weiteren Tumor-Modell, dem 4T1-Modell f{\"u}r ein metastasierendes Mammakarzinom, konnten signifikante Unterschiede im Gef{\"a}ßbild beider Modelle ausgeschlossen werden. Durch mikroskopische Methoden konnte dabei beobachtet werden, dass die Diffusion von Medikamenten aus den Blutgef{\"a}ßen des MT6-Modells im Vergleich zum 4T1-Modell verringert war. Weitere Untersuchungen deuten auf eine Differenz in der Qualit{\"a}t der extrazellul{\"a}ren Matrix der verwendeten Tumor-Modelle. Durch mRNA-Expressionsanalysen konnte die Enzymfamilie der Lysyloxidasen als m{\"o}gliche Ursache f{\"u}r diesen Diffusionsunterschied identi- fiziert werden. Lysyloxidasen katalysieren vor allem die Quervernetzung von Proteinen der Extra- zellul{\"a}rmatrix. Im Weiteren konnte gezeigt werden, dass die Quervernetzung von Matrixproteinen durch Lysyloxidasen urs{\"a}chlich f{\"u}r die Diffusions-Inhibierung kleiner Molek{\"u}le wie das Chemo- therapeutikum Doxorubicin sein kann. Durch spezifische Inhibition der Lysyloxidasen mittels des Inhibitors βAPN konnte diese Diffusions-Inhibition sowohl in vitro als auch im MT6-Tumor-Modell nahezu vollst{\"a}ndig verhindert werden. Die hohe Aktivit{\"a}t von Lysyloxidasen im MT6-Modell stell- te allerdings kein Alleinstellungsmerkmal dieses Modells dar. In weiteren Untersuchungen konnte gezeigt werden, dass Lysyloxidasen in einer Vielzahl von murinen und humanen Tumorzelllinien {\"u}berexprimiert wird. Die Inhibition von Lysyloxidasen durch βAPN konnte dabei in allen unter- suchten Modellen die Einbringung von Medikamenten in den Tumor erh{\"o}hen und k{\"o}nnte so eine sinnvolle adjuvante Maßnahme zur Verbesserung bestehender Chemotherapien darstellen.},
  subject      = {Lysin-Oxidase},
  language  = {de}
}
@article{RymaTylekLiebscheretal.2021,
  author    = {Ryma, Matthias and Tylek, Tina and Liebscher, Julia and Blum, Carina and Fernandez, Robin and B{\"o}hm, Christoph and Kastenm{\"u}ller, Wolfgang and Gasteiger, Georg and Groll, J{\"u}rgen},
  title     = {Translation of collagen ultrastructure to biomaterial fabrication for material-independent but highly efficient topographic immunomodulation},
  series = {Advanced materials},
  volume    = {33},
  journal   = {Advanced materials},
  number    = {33},
  doi       = {10.1002/adma.202101228},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-256381},
  year      = {2021},
  abstract  = {Supplement-free induction of cellular differentiation and polarization solely through the topography of materials is an auspicious strategy but has so far significantly lagged behind the efficiency and intensity of media-supplementation-based protocols. Consistent with the idea that 3D structural motifs in the extracellular matrix possess immunomodulatory capacity as part of the natural healing process, it is found in this study that human-monocyte-derived macrophages show a strong M2a-like prohealing polarization when cultured on type I rat-tail collagen fibers but not on collagen I films. Therefore, it is hypothesized that highly aligned nanofibrils also of synthetic polymers, if packed into larger bundles in 3D topographical biomimetic similarity to native collagen I, would induce a localized macrophage polarization. For the automated fabrication of such bundles in a 3D printing manner, the strategy of "melt electrofibrillation" is pioneered by the integration of flow-directed polymer phase separation into melt electrowriting and subsequent selective dissolution of the matrix polymer postprocessing. This process yields nanofiber bundles with a remarkable structural similarity to native collagen I fibers, particularly for medical-grade poly(ε-caprolactone). These biomimetic fibrillar structures indeed induce a pronounced elongation of human-monocyte-derived macrophages and unprecedentedly trigger their M2-like polarization similar in efficacy as interleukin-4 treatment.},
  language  = {en}
}
@phdthesis{Roth2003,
  author    = {Roth, Martin},
  title     = {Functional and developmental characterisation of matrix binding sites in decapentaplegic},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-7542},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2003},
  abstract  = {In the last years it became evident that many cytokines do not only bind to their specific cell surface receptors but also interact with components of the extracellular matrix. Mainly in Drosophila, several enzymes were identified, that are involved in glycosaminoglycan synthesis. Mutations in these enzymes mostly result in disturbances of several signaling pathways like hedgehog, wingless, FGF or dpp. In most cases it was, due to these pleiotropic effects, not possible to examine the relevance of matrix interactions for single pathways. The aim of this work was to examine the relevance of matrix interactions for the TGF-ß superfamily member DPP. Based on the fact that DPP is highly homologous to human BMP-2, the basic N-terminus of mature DPP was mutated, which has been shown to contain a heparin-binding site in BMP-2. Thus, a wildtype variant (D-MYC), a deletion variant (D-DEL), which lacked the whole basic part of the N-terminus and a duplication variant (D-DUP), which contained a second copy of the basic core moitiv, were generated. In order to characterise the variants biochemically, they were expressed in E.coli and refolded in a bioactive form. In chicken limbbud assay, the deletion variant was much more active than the wildtype variant, comparable to data of BMP-2. By means of biacore mesurements with the immobilised ectodomain of the high affinity type I receptor thick veins, it could be demonstrated, that the variants differ only in matrix binding and not in their receptor affinity. Different matrix binding was shown by Heparin FPLC. The biological relevance of the matrix interaction of DPP was examined in transgenic flies. To allow expression of the different variants under the control of various Gal4 driver lines, they were cloned behind an UAS-promoter site. In early tracheal development, a strong dependence of DPP signaling on matrix binding was observed. While ectopic expression of the deletion variant caused only minor defects, the branching pattern was strongly disturbed by overexpression of wildtype and duplication variant. Ubiquitous expression of the variants in the wing imaginal disc caused overproliferation of the disc and expansion of the omb target gene expression. The extent of phenotypes correlated with the matrix binding ability of the variants. Corresponding disturbances of the wing vein pattern was observed in adult flies. By the crossing of different dpp allels, transheterozygous animals were created, that lack dpp only in imaginal discs. Expression of the variants under the control of a suitable dpp-Gal4 driver line revealed insights into the biological relevance of matrix binding on DPP gradient formation and specific target gene activation in wing imaginal discs. It was shown, that all variants were able to generate a functional DPP gradient with correct expression of the target genes omb and spalt. Again a correlation between extent of target gene domains and matrix binding ability of the corresponding variants was found. Thus by mutating the N-terminus of DPP, it could be shown that this is responsible for DPP`s matrix interaction. Also the relevance of matrix binding of DPP in different tissues was examined. It turned out, that the reorganisation of tracheal branching by DPP strongly depends on matrix interactions wheras the establishing of a gradient in wing imaginal discs depends only gradually on matrix interactions. Based on these data a model for the action of DPP/TGFßs as morphogens was established. While a deletion of matrix binding leads to a decrease in specific bioactivity of the cytokine, the latter is increased by additional matrix binding sites.},
  subject      = {Taufliege},
  language  = {en}
}
@article{PachelMathesBayeretal.2013,
  author    = {Pachel, Christina and Mathes, Denise and Bayer, Barbara and Dienesch, Charlotte and Wangorsch, Gaby and Heitzmann, Wolfram and Lang, Isabell and Ardehali, Hossein and Ertl, Georg and Dandekar, Thomas and Wajant, Harald and Frantz, Stefan},
  title     = {Exogenous Administration of a Recombinant Variant of TWEAK Impairs Healing after Myocardial Infarction by Aggravation of Inflammation},
  series = {PLoS ONE},
  volume    = {8},
  journal   = {PLoS ONE},
  number    = {11},
  doi       = {10.1371/journal.pone.0078938},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-129889},
  pages     = {e78938},
  year      = {2013},
  abstract  = {Background: Tumor necrosis factor-like weak inducer of apoptosis (TWEAK) and its receptor fibroblast growth factorinducible 14 (Fn14) are upregulated after myocardial infarction (MI) in both humans and mice. They modulate inflammation and the extracellular matrix, and could therefore be important for healing and remodeling after MI. However, the function of TWEAK after MI remains poorly defined. Methods and results: Following ligation of the left coronary artery, mice were injected twice per week with a recombinant human serum albumin conjugated variant of TWEAK (HSA-Flag-TWEAK), mimicking the activity of soluble TWEAK. Treatment with HSA-Flag-TWEAK resulted in significantly increased mortality in comparison to the placebo group due to myocardial rupture. Infarct size, extracellular matrix remodeling, and apoptosis rates were not different after MI. However, HSA-Flag-TWEAK treatment increased infiltration of proinflammatory cells into the myocardium. Accordingly, depletion of neutrophils prevented cardiac ruptures without modulating all-cause mortality. Conclusion: Treatment of mice with HSA-Flag-TWEAK induces myocardial healing defects after experimental MI. This is mediated by an exaggerated neutrophil infiltration into the myocardium.},
  language  = {en}
}
@article{NandaSteinleinHaafetal.2022,
  author    = {Nanda, Indrajit and Steinlein, Claus and Haaf, Thomas and Buhl, Eva M. and Grimm, Domink G. and Friedman, Scott L. and Meurer, Steffen K. and Schr{\"o}der, Sarah K. and Weiskirchen, Ralf},
  title     = {Genetic characterization of rat hepatic stellate cell line HSC-T6 for in vitro cell line authentication},
  series = {Cells},
  volume    = {11},
  journal   = {Cells},
  number    = {11},
  issn      = {2073-4409},
  doi       = {10.3390/cells11111783},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-275178},
  year      = {2022},
  abstract  = {Immortalized hepatic stellate cells (HSCs) established from mouse, rat, and humans are valuable in vitro models for the biomedical investigation of liver biology. These cell lines are homogenous, thereby providing consistent and reproducible results. They grow more robustly than primary HSCs and provide an unlimited supply of proteins or nucleic acids for biochemical studies. Moreover, they can overcome ethical concerns associated with the use of animal and human tissue and allow for fostering of the 3R principle of replacement, reduction, and refinement proposed in 1959 by William M. S. Russell and Rex L. Burch. Nevertheless, working with continuous cell lines also has some disadvantages. In particular, there are ample examples in which genetic drift and cell misidentification has led to invalid data. Therefore, many journals and granting agencies now recommend proper cell line authentication. We herein describe the genetic characterization of the rat HSC line HSC-T6, which was introduced as a new in vitro model for the study of retinoid metabolism. The consensus chromosome markers, outlined primarily through multicolor spectral karyotyping (SKY), demonstrate that apart from the large derivative chromosome 1 (RNO1), at least two additional chromosomes (RNO4 and RNO7) are found to be in three copies in all metaphases. Additionally, we have defined a short tandem repeat (STR) profile for HSC-T6, including 31 species-specific markers. The typical features of these cells have been further determined by electron microscopy, Western blotting, and Rhodamine-Phalloidin staining. Finally, we have analyzed the transcriptome of HSC-T6 cells by mRNA sequencing (mRNA-Seq) using next generation sequencing (NGS).},
  language  = {en}
}
@article{NandaSchroederSteinleinetal.2022,
  author    = {Nanda, Indrajit and Schr{\"o}der, Sarah K. and Steinlein, Claus and Haaf, Thomas and Buhl, Eva M. and Grimm, Domink G. and Weiskirchen, Ralf},
  title     = {Rat hepatic stellate cell line CFSC-2G: genetic markers and short tandem repeat profile useful for cell line authentication},
  series = {Cells},
  volume    = {11},
  journal   = {Cells},
  number    = {18},
  issn      = {2073-4409},
  doi       = {10.3390/cells11182900},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-288067},
  year      = {2022},
  abstract  = {Hepatic stellate cells (HSCs) are also known as lipocytes, fat-storing cells, perisinusoidal cells, or Ito cells. These liver-specific mesenchymal cells represent about 5\% to 8\% of all liver cells, playing a key role in maintaining the microenvironment of the hepatic sinusoid. Upon chronic liver injury or in primary culture, these cells become activated and transdifferentiate into a contractile phenotype, i.e., the myofibroblast, capable of producing and secreting large quantities of extracellular matrix compounds. Based on their central role in the initiation and progression of chronic liver diseases, cultured HSCs are valuable in vitro tools to study molecular and cellular aspects of liver diseases. However, the isolation of these cells requires special equipment, trained personnel, and in some cases needs approval from respective authorities. To overcome these limitations, several immortalized HSC lines were established. One of these cell lines is CFSC, which was originally established from cirrhotic rat livers induced by carbon tetrachloride. First introduced in 1991, this cell line and derivatives thereof (i.e., CFSC-2G, CFSC-3H, CFSC-5H, and CFSC-8B) are now used in many laboratories as an established in vitro HSC model. We here describe molecular features that are suitable for cell authentication. Importantly, chromosome banding and multicolor spectral karyotyping (SKY) analysis demonstrate that the CFSC-2G genome has accumulated extensive chromosome rearrangements and most chromosomes exist in multiple copies producing a pseudo-triploid karyotype. Furthermore, our study documents a defined short tandem repeat (STR) profile including 31 species-specific markers, and a list of genes expressed in CFSC-2G established by bulk mRNA next-generation sequencing (NGS).},
  language  = {en}
}
@article{HorderGuazaLasherasGrummeletal.2021,
  author    = {Horder, Hannes and Guaza Lasheras, Mar and Grummel, Nadine and Nadernezhad, Ali and Herbig, Johannes and Erg{\"u}n, S{\"u}leyman and Teßmar, J{\"o}rg and Groll, J{\"u}rgen and Fabry, Ben and Bauer-Kreisel, Petra and Blunk, Torsten},
  title     = {Bioprinting and differentiation of adipose-derived stromal cell spheroids for a 3D breast cancer-adipose tissue model},
  series = {Cells},
  volume    = {10},
  journal   = {Cells},
  number    = {4},
  doi       = {10.3390/cells10040803},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-236496},
  year      = {2021},
  abstract  = {Biofabrication, including printing technologies, has emerged as a powerful approach to the design of disease models, such as in cancer research. In breast cancer, adipose tissue has been acknowledged as an important part of the tumor microenvironment favoring tumor progression. Therefore, in this study, a 3D-printed breast cancer model for facilitating investigations into cancer cell-adipocyte interaction was developed. First, we focused on the printability of human adipose-derived stromal cell (ASC) spheroids in an extrusion-based bioprinting setup and the adipogenic differentiation within printed spheroids into adipose microtissues. The printing process was optimized in terms of spheroid viability and homogeneous spheroid distribution in a hyaluronic acid-based bioink. Adipogenic differentiation after printing was demonstrated by lipid accumulation, expression of adipogenic marker genes, and an adipogenic ECM profile. Subsequently, a breast cancer cell (MDA-MB-231) compartment was printed onto the adipose tissue constructs. After nine days of co-culture, we observed a cancer cell-induced reduction of the lipid content and a remodeling of the ECM within the adipose tissues, with increased fibronectin, collagen I and collagen VI expression. Together, our data demonstrate that 3D-printed breast cancer-adipose tissue models can recapitulate important aspects of the complex cell-cell and cell-matrix interplay within the tumor-stroma microenvironment},
  language  = {en}
}
@article{HenkeNandigamaErguen2020,
  author    = {Henke, Erik and Nandigama, Rajender and Erg{\"u}n, S{\"u}leyman},
  title     = {Extracellular matrix in the tumor microenvironment and its impact on cancer therapy},
  series = {Frontiers in Molecular Biosciences},
  volume    = {6},
  journal   = {Frontiers in Molecular Biosciences},
  number    = {160},
  issn      = {2296-889X},
  doi       = {10.3389/fmolb.2019.00160},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-199341},
  year      = {2020},
  abstract  = {Solid tumors are complex organ-like structures that consist not only of tumor cells but also of vasculature, extracellular matrix (ECM), stromal, and immune cells. Often, this tumor microenvironment (TME) comprises the larger part of the overall tumor mass. Like the other components of the TME, the ECM in solid tumors differs significantly from that in normal organs. Intratumoral signaling, transport mechanisms, metabolisms, oxygenation, and immunogenicity are strongly affected if not controlled by the ECM. Exerting this regulatory control, the ECM does not only influence malignancy and growth of the tumor but also its response toward therapy. Understanding the particularities of the ECM in solid tumor is necessary to develop approaches to interfere with its negative effect. In this review, we will also highlight the current understanding of the physical, cellular, and molecular mechanisms by which the pathological tumor ECM affects the efficiency of radio-, chemo-, and immunotherapy. Finally, we will discuss the various strategies to target and modify the tumor ECM and how they could be utilized to improve response to therapy.},
  language  = {en}
}
@phdthesis{Hegerfeldt2012,
  author    = {Hegerfeldt, Yael},
  title     = {Kollektive Invasion in Melanomexplantaten: Bedeutung von Zell-Matrix-Interaktionen},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-73849},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2012},
  abstract  = {Zellmigration ist essentiell f{\"u}r die Invasion und Metastasierung maligner Tumore. Neben der Bewegung von Einzelzellen zeigen Tumore sowohl epithe¬lialen als auch mesenchymalen Ursprungs auch kollektive Migration und Invasion multizellul{\"a}rer Zellverb{\"a}nde, die sich unter Beibehaltung von Zell-Zell-Adh{\"a}sionen koordiniert als Gruppe bewegen. Ziel der Arbeit war, prim{\"a}re humane Melanomexplantate mittels organotypischer Kultur in 3D Kollagenmatrices einzusetzen, um mittels Zeit-raffermikroskopie und experimentellen Blockadestrategien die zellul{\"a}ren und molekularen Grundlagen kollektiver Migration darzustellen, insbesondere die Bedeutung von Zell-Matrix-Interaktionen und Integrinen. In 3D Explantatkulturen bildeten prim{\"a}re Melanomexplantate reproduzierbar Invasionszonen und sich abl{\"o}sende und kollektiv wandernde Zellcluster aus. Diese zeichneten sich durch eine ausgepr{\"a}gte Polarit{\"a}t mit motiler Vorderfront mit zugartig reorientierten Kollagenfasern und nachgezogenem hinteren Teil der Gruppen aus, vergleichbar der Asymmetrie haptokinetisch migrierender Fibroblasten. β1 Integrine zeigten ein heterogenes Verteilungsmuster mit Fokalisierung an Zell-Matrix-Interaktionen vor allem an der Vorderfront und linearer Anordnung entlang der Zell-Zell-Grenzen. Adh{\"a}sionsblockierende anti- β1 Integrin-Antik{\"o}rper bewirkten nahezu vollst{\"a}ndige Hemmung der kollektiven Migration, mit Verlust der Zellgruppenpolarit{\"a}t und Migrationspersistenz. Nach Integrinblockade zerfielen Zellverb{\"a}nde infolge Losl{\"o}sung von Einzelzellen, die sich mittels β1 Integrin-unabh{\"a}ngiger, am{\"o}boider Migration durch die Kollagenmatrix bewegten. Der {\"U}bergang von β1 Integrin-abh{\"a}ngiger, kollektiver Migration zu am{\"o}boider Einzelzellwanderung (kollektiv-am{\"o}boide Transition) ist ein Beispiel f{\"u}r die Plastizit{\"a}t von Tumorzellwanderung, die in Anpassung an das Milieu einen Wechsel der Migrationsstrategie erlaubt. Die Plastizit{\"a}t der Tumorzellmigration muss bei der Entwicklung therapeutischer Konzepte, die auf Hemmung von Tumorinvasion und -metastasierung abzielen, ber{\"u}cksichtigt werden.},
  subject      = {Melanom},
  language  = {de}
}
@article{HauptsteinForsterNadernezhadetal.2022,
  author    = {Hauptstein, Julia and Forster, Leonard and Nadernezhad, Ali and Horder, Hannes and Stahlhut, Philipp and Groll, J{\"u}rgen and Blunk, Torsten and Teßmar, J{\"o}rg},
  title     = {Bioink Platform Utilizing Dual-Stage Crosslinking of Hyaluronic Acid Tailored for Chondrogenic Differentiation of Mesenchymal Stromal Cells},
  series = {Macromolecular Bioscience},
  volume    = {22},
  journal   = {Macromolecular Bioscience},
  number    = {2},
  doi       = {10.1002/mabi.202100331},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-257556},
  pages     = {2100331},
  year      = {2022},
  abstract  = {3D bioprinting often involves application of highly concentrated polymeric bioinks to enable fabrication of stable cell-hydrogel constructs, although poor cell survival, compromised stem cell differentiation, and an inhomogeneous distribution of newly produced extracellular matrix (ECM) are frequently observed. Therefore, this study presents a bioink platform using a new versatile dual-stage crosslinking approach based on thiolated hyaluronic acid (HA-SH), which not only provides stand-alone 3D printability but also facilitates effective chondrogenic differentiation of mesenchymal stromal cells. A range of HA-SH with different molecular weights is synthesized and crosslinked with acrylated (PEG-diacryl) and allylated (PEG-diallyl) polyethylene glycol in a two-step reaction scheme. The initial Michael addition is used to achieve ink printability, followed by UV-mediated thiol-ene reaction to stabilize the printed bioink for long-term cell culture. Bioinks with high molecular weight HA-SH (>200 kDa) require comparably low polymer content to facilitate bioprinting. This leads to superior quality of cartilaginous constructs which possess a coherent ECM and a strongly increased stiffness of long-term cultured constructs. The dual-stage system may serve as an example to design platforms using two independent crosslinking reactions at one functional group, which allows adjusting printability as well as material and biological properties of bioinks.},
  language  = {en}
}
@article{HanKampikGrehnetal.2013,
  author    = {Han, Hong and Kampik, Daniel and Grehn, Franz and Schlunck, G{\"u}nther},
  title     = {TGF-beta 2-Induced Invadosomes in Human Trabecular Meshwork Cells},
  series = {PLoS ONE},
  volume    = {8},
  journal   = {PLoS ONE},
  number    = {8},
  doi       = {10.1371/journal.pone.0070595},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-130074},
  pages     = {e70595},
  year      = {2013},
  abstract  = {Primary open-angle glaucoma (POAG) is a leading cause of blindness due to chronic degeneration of retinal ganglion cells and their optic nerve axons. It is associated with disturbed regulation of intraocular pressure, elevated intraocular levels of TGF-β2, aberrant extracellular matrix (ECM) deposition and increased outflow resistance in the trabecular meshwork (TM). The mechanisms underlying these changes are not fully understood. Cell-matrix interactions have a decisive role in TM maintenance and it has been suggested that TGF-β-induced inhibition of matrix metalloproteases may drive aberrant ECM deposition in POAG. Invadopodia and podosomes (invadosomes) are distinct sites of cell-matrix interaction and localized matrix-metalloprotease (MMP) activity. Here, we report on the effects of TGF-β2 on invadosomes in human trabecular meshwork cells. Human TM (HTM) cells were derived from donor tissue and pretreated with vehicle or TGF-β2 (2 ng/ml) for 3d. Invadosomes were studied in ECM degradation assays, protein expression and MMP-2 activity were assessed by western blot and zymography and ECM protein transcription was detected by RT-qPCR. HTM cells spontaneously formed podosomes and invadopodia as detected by colocalization of Grb2 or Nck1 to sites of gelatinolysis. Pretreatment with TGF-β2 enhanced invadosomal proteolysis and zymographic MMP-2 activity as well as MMP-2, TIMP-2 and PAI-1 levels in HTM cell culture supernatants. Rho-kinase inhibition by H1152 blocked the effects of TGF-β2. Concomitant transcription of fibronectin and collagens-1, -4 and -6 was increased by TGF-β2 and fibrillar fibronectin deposits were observed in areas of invadosomal ECM remodelling. In contrast to a current hypothesis, our data indicate that TGF-β2 induces an active ECM remodelling process in TM cells, characterized by concurrent increases in localized ECM digestion and ECM expression, rather than a mere buildup of material due to a lack of degradation. Invadosomal cell adhesion and signaling may thus have a role in POAG pathophysiology.},
  language  = {en}
}
@article{FrischholzBerberichBoecketal.2020,
  author    = {Frischholz, Sebastian and Berberich, Oliver and B{\"o}ck, Thomas and Meffert, Rainer H. and Blunk, Torsten},
  title     = {Resveratrol counteracts IL-1β-mediated impairment of extracellular matrix deposition in 3D articular chondrocyte constructs},
  series = {Journal of Tissue Engineering and Regenerative Medicine},
  volume    = {14},
  journal   = {Journal of Tissue Engineering and Regenerative Medicine},
  number    = {7},
  doi       = {10.1002/term.3031},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-215471},
  pages     = {897 -- 908},
  year      = {2020},
  abstract  = {When aiming at cell-based therapies in osteoarthritis (OA), proinflammatory conditions mediated by cytokines such as IL-1β need to be considered. In recent studies, the phytoalexin resveratrol (RSV) has exhibited potent anti-inflammatory properties. However, long-term effects on 3D cartilaginous constructs under inflammatory conditions with regard to tissue quality, especially extracellular matrix (ECM) composition, have remained unexplored. Therefore, we employed long-term model cultures for cell-based therapies in an in vitro OA environment and evaluated effects of RSV. Pellet constructs made from expanded porcine articular chondrocytes were cultured with either IL-1β (1-10 ng/ml) or RSV (50 μM) alone, or a cotreatment with both agents. Treatments were applied for 14 days, either directly after pellet formation or after a preculture period of 7 days. Culture with IL-1β (10 ng/ml) decreased pellet size and DNA amount and severely compromised glycosaminoglycan (GAG) and collagen content. Cotreatment with RSV distinctly counteracted the proinflammatory catabolism and led to partial rescue of the ECM composition in both culture systems, with especially strong effects on GAG. Marked MMP13 expression was detected in IL-1β-treated pellets, but none upon RSV cotreatment. Expression of collagen type I was increased upon IL-1β treatment and still observed when adding RSV, whereas collagen type X, indicating hypertrophy, was detected exclusively in pellets treated with RSV alone. In conclusion, RSV can counteract IL-1β-mediated degradation and distinctly improve cartilaginous ECM deposition in 3D long-term inflammatory cultures. Nevertheless, potential hypertrophic effects should be taken into account when considering RSV as cotreatment for articular cartilage repair techniques.},
  language  = {en}
}
@phdthesis{Frischholz2021,
  author    = {Frischholz, Sebastian},
  title     = {Resveratrol Counteracts IL-1β-mediated Impairment of Extracellular Matrix Deposition in 3D Articular Chondrocyte Constructs},
  doi       = {10.25972/OPUS-23745},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-237453},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2021},
  abstract  = {Articular cartilage is an exceptional connective tissue which by a network of fibrillar collagen and glycosaminoglycan (GAG) molecules allows both low- friction articulation and distribution of loads to the subchondral bone (Armiento et al., 2018, Ulrich-Vinther et al., 2003). Because of its very limited ability to self-repair, chondral defects following traumatic injury increase the risk for secondary osteoarthritis (OA) (Muthuri et al., 2011). Still, current OA treatments such as common nonsteroidal anti-inflammatory drugs (NSAIDs) and joint replacement primarily address end-stage symptoms (Tonge et al., 2014). As low-grade inflammation plays a pivotal role in the pathogenesis of OA (Robinson et al., 2016), there is a strong demand for novel therapeutic concepts, such as integrating application of anti-inflammatory agents into cartilage cell- based therapies in order to effectively treat OA affected joints in early disease stages. The polyphenolic phytoalexin resveratrol (RSV), found in the skin of red grapes, berries, and peanuts, has been shown to have effective anti-inflammatory properties (Shen et al., 2012). However, its long-term effects on 3D chondrocyte constructs cultured in an inflammatory environment with regard to tissue quality have remained unexplored so far. Therefore, in this study, pellets made from expanded porcine articular chondrocytes were cultured for 14 days with either the pro-inflammatory cytokine interleukin-1β (IL-1β) (1 - 10 ng/ml) or RSV (50 μM) alone, or a co-treatment with both agents. Constructs treated with chondrocyte medium only served as control. Treatment with IL-1β at 10 ng/ml resulted in a significantly smaller pellet size and reduced DNA content. However, RSV counteracted the IL-1β-induced decrease and significantly enhanced diameter and DNA content. Also, in terms of GAG deposition, treatment with IL-1β at 10 ng/ml resulted in a tremendous depletion of absolute GAG content and GAG/DNA. Again, RSV co-treatment counteracted the inflammatory stimulus and led to a partial recovery of GAG content. Histological analysis utilizing safranin-O staining confirmed these findings. Marked expression of the cartilage-degrading enzyme matrix metalloproteinase 13 (MMP13) was detected in IL-1β-treated pellets, but none upon RSV co- treatment. Moreover, co-treatment of IL-1β-challenged constructs with RSV significantly increased absolute collagen content. However, under non- inflammatory conditions, RSV induced gene expression and protein accumulation of collagen type X, a marker for undesirable hypertrophy. Taken together, in the present thesis, RSV was demonstrated to elicit marked beneficial effects on the extracellular matrix composition of 3D cartilaginous constructs in long-term inflammatory culture in vitro, but also induced hypertrophy under non-inflammatory conditions. Based on these findings, further experiments examining multiple concentrations of RSV under various inflammatory conditions appear desirable concerning potential therapeutic applicability in OA.},
  subject      = {Resveratrol},
  language  = {en}
}
@article{FecherHofmannBucketal.2016,
  author    = {Fecher, David and Hofmann, Elisabeth and Buck, Andreas and Bundschuh, Ralph and Nietzer, Sarah and Dandekar, Gudrun and Walles, Thorsten and Walles, Heike and L{\"u}ckerath, Katharina and Steinke, Maria},
  title     = {Human Organotypic Lung Tumor Models: Suitable For Preclinical \(^{18}\)F-FDG PET-Imaging},
  series = {PLoS ONE},
  volume    = {11},
  journal   = {PLoS ONE},
  number    = {8},
  doi       = {10.1371/journal.pone.0160282},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-179678},
  year      = {2016},
  abstract  = {Development of predictable in vitro tumor models is a challenging task due to the enormous complexity of tumors in vivo. The closer the resemblance of these models to human tumor characteristics, the more suitable they are for drug-development and -testing. In the present study, we generated a complex 3D lung tumor test system based on acellular rat lungs. A decellularization protocol was established preserving the architecture, important ECM components and the basement membrane of the lung. Human lung tumor cells cultured on the scaffold formed cluster and exhibited an up-regulation of the carcinoma-associated marker mucin1 as well as a reduced proliferation rate compared to respective 2D culture. Additionally, employing functional imaging with 2-deoxy-2-[\(^{18}\)F]fluoro-D-glucose positron emission tomography (FDG-PET) these tumor cell cluster could be detected and tracked over time. This approach allowed monitoring of a targeted tyrosine kinase inhibitor treatment in the in vitro lung tumor model non-destructively. Surprisingly, FDG-PET assessment of single tumor cell cluster on the same scaffold exhibited differences in their response to therapy, indicating heterogeneity in the lung tumor model. In conclusion, our complex lung tumor test system features important characteristics of tumors and its microenvironment and allows monitoring of tumor growth and -metabolism in combination with functional imaging. In longitudinal studies, new therapeutic approaches and their long-term effects can be evaluated to adapt treatment regimes in future.},
  language  = {en}
}
@phdthesis{Eulert2008,
  author    = {Eulert, Stephan},
  title     = {Analyse diverser Matrixproteine im Einheilgewebe um medizinische Implantatwerkstoffe mittels Konfokaler Laserscanning Mikroskopie - Eine tierexperimentelle Untersuchung},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-29103},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2008},
  abstract  = {Ziel der vorliegenden tierexperimentellen Studie war es, Unterschiede im Einheilverhalten der Werkstoffe Titan und VA-Stahl (316L) anhand der Matrixproteine Kollagen Typ I (C1), Kollagen Typ III (C3) und Fibronektin im implantatumgebenden Interface zu untersuchen und darzustellen. Hierzu wurden die Einheilkapseln der Implantate nach subkutaner, intramuskul{\"a}rer und intraoss{\"a}rer Implantation nach den Bewertungskriterien Kapselqualit{\"a}t, Kapseldicke und Verteilungsmuster der Matrixproteine mittels konventioneller Mikroskopie und Konfokaler Laserscanning Mikroskopie (CLSM) analysiert. Nach subkutaner Implantation zeigten beide Werkstoffe in {\"U}bereinstimmung mit den Ergebnissen von SHANNON et al. (1997) vermehrt locker angeordnete, teils parallel orientierte Kollagenfasern mit erh{\"o}htem Zellaufkommen an Fibroblasten und Makrophagen. Nach intramuskul{\"a}rer Implantation jedoch fanden sich vorwiegend parallel angeordnete, teils dicht gepackte Kollagenfasern mit nur m{\"a}ßig erh{\"o}htem Zellaufkommen. Intramuskul{\"a}r eingebrachte Implantate heilten in d{\"u}nneren Kapseln ein, als subkutan eingebrachte Implantate. Es ergab sich keine Korrelation zu den ermittelten Kapselqualit{\"a}ten. Dies erstaunt umso mehr, da unter der fortw{\"a}hrenden funktionellen Beanspruchung der intramuskul{\"a}ren Implantate im Bereich der Bauchmuskulatur gegen{\"u}ber der statischeren Platzierung im subkutanen R{\"u}ckenfett eine erh{\"o}hte Zell- und Matrixreaktion erwartet worden war. Im Lokalisationsvergleich zeigte sich intramuskul{\"a}r f{\"u}r beide Werkstoffe ein erh{\"o}htes Aufkommen an Fibronektin. Dies k{\"o}nnte auf die erh{\"o}hte Stoffwechselaktivit{\"a}t und funktionelle Belastung im Muskelgewebe zur{\"u}ckgef{\"u}hrt werden (ROSENGREN et al. 1994). Nach intraoss{\"a}rer Implantation konnten d{\"u}nnere Kallusformationen f{\"u}r VA-Stahl gegen{\"u}ber Titan in allen Proteinfluoreszenzen nachgewiesen werden. Die Qualit{\"a}t der Kallusformation und die histologische Kallusstruktur glichen sich mit zunehmender Implantationsdauer der regul{\"a}ren Knochenstruktur an. Die semiquantitativ beurteilte Verteilung der Matrixproteine mittels CLSM zeigte bei deutlichen Standardabweichungen f{\"u}r beide Werkstoffe erh{\"o}hte Fluoreszenz-Intensit{\"a}ten nur in den implantatnahen Kapselanteilen. In den mittleren und den implantatfernen Kapselabschnitten waren f{\"u}r beide Werkstoffe inkonstant h{\"o}here Fluoreszenzwerte gegen{\"u}ber den Vergleichskollektiven messbar. Der intraoss{\"a}re Materialvergleich ergab implantatnahe und implantatferne Fluoreszenzmaxima f{\"u}r alle Matrixproteine, die mit zunehmender Implantationsdauer abfielen. Reproduzierbare, materialspezifische Unterschiede waren in Analogie zu BERGER-GORBET et al. (1996) nicht zu finden. In den mittleren Kallusabschnitten konnten reproduzierbare Fluoreszenzunterschiede nur bei Detektion von Kollagen Typ I (C1) in allen Zeitintervallen gesehen werden. Im Vergleich zur Literatur konnte die von VIROLAINEN et al. (1997) beschriebene biphasische Proteinanh{\"a}ufung, wie auch ein wechselndes Proteinaufkommen (LINDHOLM et al. 1996) nach intraoss{\"a}rer Implantation nicht nachvollzogen werden. Erg{\"a}nzende Beobachtungen der hier vorgestellten Studie verdeutlichen, dass die lokale, intraoss{\"a}re Anreicherung von Matrixproteinen, unabh{\"a}ngig von Implantatinsertion oder gar Werkstoffeigenschaften, nach jeglicher Traumatisierung von Knochengewebe den kn{\"o}chernen Reparationsprozess begleitet. Unter dem Aspekt der Restitutio ad Integrum von Knochenwunden k{\"o}nnen diese Beobachtungen auf das implantatnahe und das implantatferne Restitutionszentrum {\"u}bertragen werden. Die Aktivit{\"a}t dieser Restitutionszentren h{\"a}lt bis zum Abschluss der kn{\"o}chernen Remodellierung {\"u}ber 12 Wochen hinaus an. Dies deckt sich mit Aussagen von STEFLIK et al. (1998), wonach der periimplant{\"a}re Knochenumbau langfristig dynamisch bestehen bleibt. Um der zunehmenden Verbreitung nicht nur dentaler Implantate gerecht zu werden, muss auch zuk{\"u}nftig ein besseres Verst{\"a}ndnis der Komunikationswege zwischen Implantaten und Biosystemen gewonnen werden. Dies bedeutet f{\"u}r die Herstellung und Weiterentwicklung von Implantaten, dass nicht nur die Werkstoff- und Oberfl{\"a}chenauswahl wichtig ist, sondern auch die funktionell erforderliche Oberfl{\"a}chenstrukturierung auf die gew{\"u}nschte Wechselwirkung mit Bestandteilen der EZM und den Zellen angepasst sein sollte (THULL 2005). Die CLSM kann hierbei aufgrund der M{\"o}glichkeit der 3-dimensionalen in-situ-Darstellung des Implantatinterface biologisch-strukturelle und molekularbiologisch-immunologische Fragestellungen beantworten.},
  subject      = {Implantat},
  language  = {de}
}
@article{EndresKneitzOrthetal.2016,
  author    = {Endres, Marcel and Kneitz, Susanne and Orth, Martin F. and Perera, Ruwan K. and Zernecke, Alma and Butt, Elke},
  title     = {Regulation of matrix metalloproteinases (MMPs) expression and secretion in MDA-MB-231 breast cancer cells by LIM and SH3 protein 1 (LASP1)},
  series = {Oncotarget},
  volume    = {7},
  journal   = {Oncotarget},
  number    = {39},
  doi       = {10.18632/oncotarget.11720},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-176920},
  pages     = {64244-64259},
  year      = {2016},
  abstract  = {The process of tumor invasion requires degradation of extracellular matrix by proteolytic enzymes. Cancer cells form protrusive invadopodia, which produce and release matrix metalloproteinases (MMPs) to degrade the basement membrane thereby enabling metastasis. We investigated the effect of LASP1, a newly identified protein in invadopodia, on expression, secretion and activation of MMPs in invasive breast tumor cell lines. By analyzing microarray data of in-house generated control and LASP1-depleted MDA-MB-231 breast cancer cells, we observed downregulation of MMP1, -3 and -9 upon LASP1 depletion. This was confirmed by Western blot analysis. Conversely, rescue experiments restored in part MMP expression and secretion. The regulatory effect of LASP1 on MMP expression was also observed in BT-20 breast cancer cells as well as in prostate and bladder cancer cell lines. In line with bioinformatic FunRich analysis of our data, which mapped a high regulation of transcription factors by LASP1, public microarray data analysis detected a correlation between high LASP1 expression and enhanced c-Fos levels, a protein that is part of the transcription factor AP-1 and known to regulate MMP expression. Compatibly, in luciferase reporter assays, AP-1 showed a decreased transcriptional activity after LASP1 knockdown. Zymography assays and Western blot analysis revealed an additional promotion of MMP secretion into the extracellular matrix by LASP1, thus, most likely, altering the microenvironment during cancer progression. The newly identified role of LASP1 in regulating matrix degradation by affecting MMP transcription and secretion elucidated the migratory potential of LASP1 overexpressing aggressive tumor cells in earlier studies.},
  language  = {en}
}
@phdthesis{Dodt2021,
  author    = {Dodt, Katharina Anna},
  title     = {Monitoring enzyme activity by using mass-encoded peptides and multiplexed detection},
  doi       = {10.25972/OPUS-22937},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-229377},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2021},
  abstract  = {Cell culture models are helpful tools to study inflammatory diseases, like rheumatoid arthritis (RA), osteoarthritis (OA), arteriosclerosis or asthma, which are linked to increased matrix metalloproteinase (MMP) activity. Such cell culture models often focus on the secretion of cytokines and growth factors or the direct effects of disease on tissue destruction. Even though the crucial role of MMPs in inflammatory diseases is known, the results of MMP studies are contradictious and the use of MMPs as biomarkers is inconsistent. MMPs play an important role in disease pathology, as they are involved in elastin degradation in the walls of alveoli in chronic obstructive pulmonary disease (COPD), tumor angiogenesis and metastasis and in cartilage and bone degradation in arthropathies. In RA and OA MMPs are secreted by osteocytes, synoviocytes, and by infiltrating immune cells in response to the increased concentration of inflammatory mediators, like growth factors and cytokines. MMPs are zinc and calcium-dependent proteinases and play an important role in physiological and pathological extracellular matrix (ECM) turn over. Their substrate specificity gives them the ability to degrade all major ECM components, like aggrecan, elastin, gelatin, fibronectin and all types of collagen even the triple helix of collagen monomers. The ECM consists of two large three-dimensional cross-linked macromolecule classes: one are fibrous proteins, like collagen and elastin fibers that are responsible for ECM's structure, tensile strength, resiliency, reversible extensibility, and deformability and the second class is comprised of proteoglycans composed of glycosaminoglycan (GAG) chains covalently attached to protein cores that are multifunctionally involved in signaling pathways and cell interactions. ECM is present within all tissues and organs and changes in ECM structure contribute to pathogenesis, e.g. wounded and fibrotic tissue, COPD or tumours. This thesis primarily focuses on the development of a diagnostic peptide system, that enables to gain information on MMP activity from ECM by deploying the isobaric mass encoding strategy. The core element of the developed system is an isotopically labelled peptide sequence (mass tag), that is released in response to elevated levels of MMPs and allows multiplexed detection in tandem mass spectrometry (LC-MS/MS). The mass reporters possess a modular structure with different functionalities. C-terminal either a transglutaminase (TG) recognition sequence or a high molecular weight polyethylene glycol (PEG) moiety was attached to immobilize the mass reporters covalently or physically at the injection site. The following matrix metalloproteinase substrate sequence (MSS) is incorporated in two different versions with different sensitivity to MMPs. The MSS were applied in pairs for relative quantification consisting of the cleavable version synthesized with natural L-amino acids and the non-cleavable D-amino acid variant. The mass tag was synthesized with isotopically labelled amino acids and is separated from the MSS by a UV light-sensitive molecule. N-terminal the mass tag is followed by a tobacco etch virus protease (TEV) sensitive sequence, that is responsible to separate the mass tag from the affinity tag, which was either the Strep-tag II sequence or biotin and were added for purification purposes. Chapter 1 presents a step-by-step protocol on how to design a mass tag family allowing for multiplexed analysis by LC-MS/MS. The multiplexing is achieved by developing an isobar mass tag family with four family members, which are chromatographically indistinguishable, but due to the mass encoding principles they fragment in distinct y-type ions with a mass difference of 1 or 2 Da each in MS2. Furthermore, it is explained how to covalently attach the mass reporter peptides onto ECM by the activated calcium-catalyzed blood coagulation transglutaminase factor XIII (FXIIIa). The lysine of mass reporter's TG sequence (D-domain of insulin-like growth factor-I (IGF-I)) and a glutamine in fibronectin are covalently crosslinked by FXIIIa and build an isopeptide bond. Elevated levels of MMP release the mass reporters from ECM by recognizing the inter-positioned MSS. The designed mass reporters were able to monitor enzyme activity in an in vitro setting with cell-derived ECM, which was shown in Chapter 2. The modular structured mass reporters were investigated in a proof of concept study. First, the different modules were characterized in terms of their MMP responsiveness and their sensitivity to TEV protease and UV light. Then the FXIIIa-mediated coupling reaction was detailed and the successful coupling on ECM was visualized by an immunosorbent assay or confocal laser scanning microscopy. Finally, the immobilized mass reporters on ECM were incubated with MMP-9 to investigate their multiplexing ability of MMP activity. The cleaved mass reporter fragments were purified in three steps and mass tags were analyzed as mix of all four in LC-MS/MS. Chapter 3 describes the change from an immobilizing system as seen in chapter 1 and 2 to a soluble enzyme activity monitoring system that was applied in an osteoarthritic mouse model. Instead of the immobilizing TG sequence the C-terminal MMS was extended with two amino acids where one holds an azide moiety to perform a strain-promoted azide-alkyne cycloaddition to a high molecular weight dibenzocyclooctyne-polyethylene glycol (DBCO-PEG), which was chosen to retain the mass reporters at the injection site. Furthermore, the N-terminal affinity tag was extended with a 2.5 kDa PEG chain to increase the half-life of the mass reporter peptides after MMP release. The systems biocompatibility was proved but its enzyme monitoring ability in an in vivo setting could not be analyzed as samples degraded during shipping resulting from the Chinese customs blocking transport to Germany. In summary the diagnostic peptide system was developed in two variants. The immobilized version one from chapter 1 and 2 was designed to be covalently attached to ECM by the transglutaminase-mediated cross-linking reaction. In an in vitro setting the functionality of the mass reporter system for the detection of MMP activity was successfully verified. The second variant comprises of a soluble mass reporter system that was tested in an OA mouse model and showed biocompatibility. With these two designed systems this thesis provides a flexible platform based on multiplexed analysis with mass-encoded peptides to characterize cell culture models regarding their MMP activity, to deploy cell-derived ECM as endogenous depot scaffold and to develop a mass tag family that enables simultaneous detection of at least four mass tags.},
  subject      = {Extrazellul{\"a}re Matrix},
  language  = {en}
}