@phdthesis{Mueller2010,
  author    = {M{\"u}ller, Judith},
  title     = {Die Rolle der HectH9/Mcl1-Interaktion in der Myc-induzierten Apoptose und Auswirkungen der Myc V394D-Mutation auf die von c-Myc gesteuerten Tumorgenese in einem transgenen Mausmodell},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-55789},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2010},
  abstract  = {W{\"a}hrend der Entstehung von Tumoren k{\"o}nnen zwei Mechanismen auftreten, die beide von der Aktivit{\"a}t der Onkogene abh{\"a}ngig sind und die Tumorgenese einschr{\"a}nken. F{\"u}r das Onkogen Myc ist gezeigt, dass es sowohl Apoptose als auch unter bestimmten Umst{\"a}nden Seneszenz ausl{\"o}sen kann und damit sein eigenes onkogenes Potential limitiert. Im Rahmen dieser Arbeit konnte ich mich mit diesen Tumor-suppressiven Mechanismen in zwei unabh{\"a}ngigen Teilprojekten besch{\"a}ftigen. Eine erh{\"o}hte Expression von Myc steigert die Proliferation der Zellen, induziert aber gleichzeitig Doppelstrangbr{\"u}che an der DNA. Durch den dadurch entstandenen Schaden wird die DNA-Schadensantwort ausgel{\"o}st, die zum Beispiel zur Phosphorylierung von H2A.X durch die Kinasen Atm und Atr f{\"u}hrt. Ein weiteres putatives Zielprotein dieser Kinasen ist HectH9, das abh{\"a}ngig vom DNA-Schaden das mitochondriale Protein Mcl1 ubiquitiniert und es damit f{\"u}r den proteasomalen Abbau markiert. Im ungestressten Zustand interagiert das in der mitochondrialen Membran lokalisierte Protein Mcl1 mit proapoptotischen Proteinen und h{\"a}lt deren inerten Status aufrecht. Die Reduktion der Mcl1-Mengen ist essentiell, um die proapoptotischen Proteine zu aktivieren, dadurch die Freisetzung von Zytochrom C aus dem Mitochondrium zu veranlassen und damit den Prozess der Apoptose einleiten zu k{\"o}nnen. Anhand der in dieser Arbeit dokumentierten Daten bietet sich Mcl1 als potentielles Zielprotein f{\"u}r pharmazeutisch Strategien zur Therapie Myc-induzierter Tumore an. Im Idealfall erh{\"o}ht eine verst{\"a}rkte Reduktion seiner Proteinmengen die zellul{\"a}re Apoptose und verringert somit das Tumorwachstum. Im murinen T-Zell-Lymphom wird die Myc-abh{\"a}ngige Tumorgenese durch eine Mutation der Proteinsequenz von Myc verlangsamt. Diese Mutation unterbindet die Bindung von Myc zu Miz1 und verhindert dadurch die Repression von Zielgenen. Abh{\"a}ngig von der Interaktion von Myc zu Miz1 gelingt die Inhibition der Transkription des Zellzyklusinhibitors p15Ink4b. Die Interaktion von Myc und Miz1 ist essentiell um die TGFbeta-abh{\"a}ngige Seneszenz zu umgehen. Dar{\"u}ber hinaus ist Myc direkt an der Repression von TGFbeta beteiligt. Entgegen der bisher verwendeten Modelle konnte in dieser Arbeit gezeigt werden, dass Myc unabh{\"a}ngig von Miz1 zu den Promotoren der reprimierten Zielgene rekrutiert wird und die Bindung der beiden Proteine offensichtlich nur f{\"u}r die Transrepression essentiell ist.},
  subject      = {Myc},
  language  = {de}
}
@article{CoxLimpensVlesvandenHoveetal.2014,
  author    = {Cox-Limpens, Kimberly E. M. and Vles, Johan S. H. and van den Hove, Daniel L. A. and Zimmermann, Luc Ji and Gavilanes, Antonio W. D.},
  title     = {Fetal asphyctic preconditioning alters the transcriptional response to perinatal asphyxia},
  series = {BMC Neuroscience},
  volume    = {15},
  journal   = {BMC Neuroscience},
  doi       = {10.1186/1471-2202-15-67},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-116185},
  pages     = {67},
  year      = {2014},
  abstract  = {Background: Genomic reprogramming is thought to be, at least in part, responsible for the protective effect of brain preconditioning. Unraveling mechanisms of this endogenous neuroprotection, activated by preconditioning, is an important step towards new clinical strategies for treating asphyctic neonates. Therefore, we investigated whole-genome transcriptional changes in the brain of rats which underwent perinatal asphyxia (PA), and rats where PA was preceded by fetal asphyctic preconditioning (FAPA). Offspring were sacrificed 6 h and 96 h after birth, and whole-genome transcription was investigated using the Affymetrix Gene1.0ST chip. Microarray data were analyzed with the Bioconductor Limma package. In addition to univariate analysis, we performed Gene Set Enrichment Analysis (GSEA) in order to derive results with maximum biological relevance. Results: We observed minimal, 25\% or less, overlap of differentially regulated transcripts across different experimental groups which leads us to conclude that the transcriptional phenotype of these groups is largely unique. In both the PA and FAPA group we observe an upregulation of transcripts involved in cellular stress. Contrastingly, transcripts with a function in the cell nucleus were mostly downregulated in PA animals, while we see considerable upregulation in the FAPA group. Furthermore, we observed that histone deacetylases (HDACs) are exclusively regulated in FAPA animals. Conclusions: This study is the first to investigate whole-genome transcription in the neonatal brain after PA alone, and after perinatal asphyxia preceded by preconditioning (FAPA). We describe several genes/pathways, such as ubiquitination and proteolysis, which were not previously linked to preconditioning-induced neuroprotection. Furthermore, we observed that the majority of upregulated genes in preconditioned animals have a function in the cell nucleus, including several epigenetic players such as HDACs, which suggests that epigenetic mechanisms are likely to play a role in preconditioning-induced neuroprotection.},
  language  = {en}
}
@article{PeterBultinckMyantetal.2014,
  author    = {Peter, Stefanie and Bultinck, Jennyfer and Myant, Kevin and Jaenicke, Laura A. and Walz, Susanne and M{\"u}ller, Judith and Gmachl, Michael and Treu, Matthias and Boehmelt, Guido and Ade, Casten P. and Schmitz, Werner and Wiegering, Armin and Otto, Christoph and Popov, Nikita and Sansom, Owen and Kraut, Norbert and Eilers, Martin},
  title     = {H Tumor cell-specific inhibition of MYC function using small molecule inhibitors of the HUWE1 ubiquitin ligase},
  series = {EMBO Molecular Medicine},
  volume    = {6},
  journal   = {EMBO Molecular Medicine},
  number    = {12},
  issn      = {1757-4684},
  doi       = {10.15252/emmm.201403927},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-118132},
  pages     = {1525-41},
  year      = {2014},
  abstract  = {Deregulated expression of MYC is a driver of colorectal carcinogenesis, necessitating novel strategies to inhibit MYC function. The ubiquitin ligase HUWE1 (HECTH9, ARF-BP1, MULE) associates with both MYC and the MYC-associated protein MIZ1. We show here that HUWE1 is required for growth of colorectal cancer cells in culture and in orthotopic xenograft models. Using high-throughput screening, we identify small molecule inhibitors of HUWE1, which inhibit MYC-dependent transactivation in colorectal cancer cells, but not in stem and normal colon epithelial cells. Inhibition of HUWE1 stabilizes MIZ1. MIZ1 globally accumulates on MYC target genes and contributes to repression of MYC-activated target genes upon HUWE1 inhibition. Our data show that transcriptional activation by MYC in colon cancer cells requires the continuous degradation of MIZ1 and identify a novel principle that allows for inhibition of MYC function in tumor cells.},
  language  = {en}
}
@article{SalatWinklerUrlaubetal.2015,
  author    = {Salat, Daniela and Winkler, Anja and Urlaub, Henning and Gessler, Manfred},
  title     = {Hey bHLH Proteins Interact with a FBXO45 Containing SCF Ubiquitin Ligase Complex and Induce Its Translocation into the Nucleus},
  series = {PLoS One},
  volume    = {10},
  journal   = {PLoS One},
  number    = {6},
  doi       = {10.1371/journal.pone.0130288},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-125769},
  pages     = {e0130288},
  year      = {2015},
  abstract  = {The Hey protein family, comprising Hey1, Hey2 and HeyL in mammals, conveys Notch signals in many cell types. The helix-loop-helix (HLH) domain as well as the Orange domain, mediate homo- and heterodimerization of these transcription factors. Although distinct interaction partners have been identified so far, their physiological relevance for Hey functions is still largely unclear. Using a tandem affinity purification approach and mass spectrometry analysis we identified members of an ubiquitin E3-ligase complex consisting of FBXO45, PAM and SKP1 as novel Hey1 associated proteins. There is a direct interaction between Hey1 and FBXO45, whereas FBXO45 is needed to mediate indirect Hey1 binding to SKP1. Expression of Hey1 induces translocation of FBXO45 and PAM into the nucleus. Hey1 is a short-lived protein that is degraded by the proteasome, but there is no evidence for FBXO45-dependent ubiquitination of Hey1. On the contrary, Hey1 mediated nuclear translocation of FBXO45 and its associated ubiquitin ligase complex may extend its spectrum to additional nuclear targets triggering their ubiquitination. This suggests a novel mechanism of action for Hey bHLH factors.},
  language  = {en}
}
@article{BergerDemolombeHemetal.2022,
  author    = {Berger, Nathalie and Demolombe, Vincent and Hem, Sonia and Rofidal, Val{\´e}rie and Steinmann, Laura and Krouk, Gabriel and Crabos, Amandine and Nacry, Philippe and Verdoucq, Lionel and Santoni, V{\´e}ronique},
  title     = {Root membrane ubiquitinome under short-term osmotic stress},
  series = {International Journal of Molecular Sciences},
  volume    = {23},
  journal   = {International Journal of Molecular Sciences},
  number    = {4},
  issn      = {1422-0067},
  doi       = {10.3390/ijms23041956},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-284003},
  year      = {2022},
  abstract  = {Osmotic stress can be detrimental to plants, whose survival relies heavily on proteomic plasticity. Protein ubiquitination is a central post-translational modification in osmotic-mediated stress. In this study, we used the K-Ɛ-GG antibody enrichment method integrated with high-resolution mass spectrometry to compile a list of 719 ubiquitinated lysine (K-Ub) residues from 450 Arabidopsis root membrane proteins (58\% of which are transmembrane proteins), thereby adding to the database of ubiquitinated substrates in plants. Although no ubiquitin (Ub) motifs could be identified, the presence of acidic residues close to K-Ub was revealed. Our ubiquitinome analysis pointed to a broad role of ubiquitination in the internalization and sorting of cargo proteins. Moreover, the simultaneous proteome and ubiquitinome quantification showed that ubiquitination is mostly not involved in membrane protein degradation in response to short osmotic treatment but that it is putatively involved in protein internalization, as described for the aquaporin PIP2;1. Our in silico analysis of ubiquitinated proteins shows that two E2 Ub-conjugating enzymes, UBC32 and UBC34, putatively target membrane proteins under osmotic stress. Finally, we revealed a positive role for UBC32 and UBC34 in primary root growth under osmotic stress.},
  language  = {en}
}