@phdthesis{Andreska2021,
  author    = {Andreska, Thomas},
  title     = {Effects of dopamine on BDNF / TrkB mediated signaling and plasticity on cortico-striatal synapses},
  doi       = {10.25972/OPUS-17431},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-174317},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2021},
  abstract  = {Progressive loss of voluntary movement control is the central symptom of Parkinson's disease (PD). Even today, we are not yet able to cure PD. This is mainly due to a lack of understanding the mechanisms of movement control, network activity and plasticity in motor circuits, in particular between the cerebral cortex and the striatum. Brain-derived neurotrophic factor (BDNF) has emerged as one of the most important factors for the development and survival of neurons, as well as for synaptic plasticity. It is thus an important target for the development of new therapeutic strategies against neurodegenerative diseases. Together with its receptor, the Tropomyosin receptor kinase B (TrkB), it is critically involved in development and function of the striatum. Nevertheless, little is known about the localization of BDNF within presynaptic terminals in the striatum, as well as the types of neurons that produce BDNF in the cerebral cortex. Furthermore, the influence of midbrain derived dopamine on the control of BDNF / TrkB interaction in striatal medium spiny neurons (MSNs) remains elusive so far. Dopamine, however, appears to play an important role, as its absence leads to drastic changes in striatal synaptic plasticity. This suggests that dopamine could regulate synaptic activity in the striatum via modulation of BDNF / TrkB function. To answer these questions, we have developed a sensitive and reliable protocol for the immunohistochemical detection of endogenous BDNF. We find that the majority of striatal BDNF is provided by glutamatergic, cortex derived afferents and not dopaminergic inputs from the midbrain. In fact, we found BDNF in cell bodies of neurons in layers II-III and V of the primary and secondary motor cortex as well as layer V of the somatosensory cortex. These are the brain areas that send dense projections to the dorsolateral striatum for control of voluntary movement. Furthermore, we could show that these projection neurons significantly downregulate the expression of BDNF during the juvenile development of mice between 3 and 12 weeks. In parallel, we found a modulatory effect of dopamine on the translocation of TrkB to the cell surface in postsynaptic striatal Medium Spiny Neurons (MSNs). In MSNs of the direct pathway (dMSNs), which express dopamine receptor 1 (DRD1), we observed the formation of TrkB aggregates in the 6-hydroxydopamine (6-OHDA) model of PD. This suggests that DRD1 activity controls TrkB surface expression in these neurons. In contrast, we found that DRD2 activation has opposite effects in MSNs of the indirect pathway (iMSNs). Activation of DRD2 promotes a rapid decrease in TrkB surface expression which was reversible and depended on cAMP. In parallel, stimulation of DRD2 led to induction of phospho-TrkB (pTrkB). This effect was significantly slower than the effect on TrkB surface expression and indicates that TrkB is transactivated by DRD2. Together, our data provide evidence that dopamine triggers dual modes of plasticity on striatal MSNs by acting on TrkB surface expression in DRD1 and DRD2 expressing MSNs. This surface expression of the receptor is crucial for the binding of BDNF, which is released from corticostriatal afferents. This leads to the induction of TrkB-mediated downstream signal transduction cascades and long-term potentiation (LTP). Therefore, the dopamine-mediated translocation of TrkB could be a mediator that modulates the balance between dopaminergic and glutamatergic signaling to allow synaptic plasticity in a spatiotemporal manner. This information and the fact that TrkB is segregated to persistent aggregates in PD could help to improve our understanding of voluntary movement control and to develop new therapeutic strategies beyond those focusing on dopaminergic supply.},
  subject      = {Brain-derived neurotrophic factor},
  language  = {en}
}
@phdthesis{Andres2006,
  author    = {Andres, Oliver},
  title     = {Interaktion von Masernviren mit vaskul{\"a}ren Endothelzellen},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-25650},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2006},
  abstract  = {Obwohl eine wirksame Schutzimpfung verf{\"u}gbar ist, sind Masern noch immer weltweit verbreitet. Mit etwa 750.000 Todesf{\"a}llen j{\"a}hrlich geh{\"o}ren sie zu den gef{\"a}hrlichsten Infektionskrankheiten im Kindesalter {\"u}berhaupt. Nicht allein wegen der masernvirusinduzierten Immunsuppression treten sekund{\"a}re bakterielle Infektionen, darunter Otitiden oder Pneumonien, geh{\"a}uft auf. Eine Beteiligung des zentralen Nervensystems kann zur akuten postinfekti{\"o}sen Masernenzephalitis (APME), die meist mit einer hohen Defektheilungsrate einhergeht, oder zur letal verlaufenden subakuten sklerosierenden Panenzephalitis (SSPE) f{\"u}hren. Besonders gef{\"u}rchtet sind die schweren Komplikationen der Riesenzellpneumonie oder der measles inclusion body encephalitis (MIBE) bei immunsupprimierten Patienten. Viele pathogenetische Aspekte und pathophysiologische Vorg{\"a}nge sind dabei noch nicht g{\"a}nzlich verstanden. Vaskul{\"a}re Endothelzellen sind neben Epithelzellen, Monozyten und Makrophagen sowie Lymphozyten als wichtige Zielzellen f{\"u}r das Masernvirus bei der Ausbreitung der Masernvirusinfektion und Entstehung ihrer Komplikationen anzusehen. In immunhistochemisch aufbereiteten pathologischen Schnittpr{\"a}paraten wurden in infizierten und stark entz{\"u}ndlich ver{\"a}nderten Arealen immer wieder infizierte Gef{\"a}ßendothelzellen gefunden. Eine systematische Untersuchung der Interaktion von Masernviren mit humanen Gef{\"a}ßendothelzellen in vitro lag allerdings bislang nicht vor. Das Ziel dieser Dissertation war es nun, die Interaktion von attenuierten und virulenten Masernvirusst{\"a}mmen mit humanen Gef{\"a}ßendothelzellen grundlegend und systematisch zu untersuchen und eine Basis f{\"u}r die Definition pathogenetisch bedeutsamer molekularer Mechanismen zu schaffen. Hierf{\"u}r wurde mit prim{\"a}ren Endothelzellen der menschlichen Nabelschnurvene (HUVEC) und einer humanen mikrovaskul{\"a}ren Hirnendothelzelllinie (HBMEC) ein rein humanes Zellkulturmodell gew{\"a}hlt und unter Verwendung attenuierter und virulenter Masernvirusst{\"a}mme den nat{\"u}rlichen Bedingungen Rechnung getragen. Als essentielle Grundlage f{\"u}r die Untersuchungsreihen wurden die Endothelzellen auf endothelzellspezifische Markermolek{\"u}le hin untersucht und charakterisiert. Einzig die Oberfl{\"a}chenproteine membrane cofactor protein (MCP oder CD46) und signaling lymphocytic activation molecule (SLAM oder CD150) sind bislang als zellul{\"a}re Rezeptoren f{\"u}r das Masernvirus identifiziert worden. Es konnte hier eindeutig nachgewiesen werden, dass HUVEC und HBMEC auf verschiedenen zellul{\"a}ren Ebenen konstitutiv CD46, nicht aber SLAM exprimieren. Weder eine Aktivierung der Endothelzellen mit diversen Zytokinen und Stimulantien, noch der Kontakt der Endothelzellen mit inaktivierten Masernviren vermochte eine Expression von SLAM zu induzieren, obwohl eine Expression von toll-like receptor 2 (TLR2) klar aufgezeigt werden konnte. Es konnte hier ebenfalls belegt werden, dass sowohl der attenuierte Masernvirusstamm Edmonston (Edm) als auch die virulenten Masernvirusst{\"a}mme WTFb, W{\"u}4797 und W{\"u}5679 Endothelzellen infizieren und eine morphologische Zellalteration mit Ausbildung eines zytopathischen Effekts hervorrufen k{\"o}nnen. Weitere Analysen zeigten f{\"u}r Edm und W{\"u}4797 ein enormes Infektionsausmaß und eine sehr gute Ausbreitungseffizienz, die durch die Anwesenheit CD46-spezifischer Antik{\"o}rper nur bei Edm klar reduziert werden konnte. Eine Aktivierung der Endothelzellen mit diversen Zytokinen und Stimulantien trug keinen eindeutigen beg{\"u}nstigenden oder hemmenden Effekt auf die Masernvirusinfektion mit sich, Interferon-\&\#945; und -\&\#947; schienen das Infektionsausmaß abzuschw{\"a}chen. Folgeversuche zur Rezeptormodulation durch Masernviren deuten darauf hin, dass CD46 nur f{\"u}r den attenuierten Masernvirusstamm Edm, nicht aber f{\"u}r die virulenten Masernvirusst{\"a}mme WTFb, W{\"u}4797 und W{\"u}5679 als zellul{\"a}rer Rezeptor fungiert. Die Ergebnisse dieser Dissertation belegen eine von den beiden Masernvirusrezeptoren CD46 und SLAM unabh{\"a}ngige Infektion humaner vaskul{\"a}rer Endothelzellen mit Masernviruswildtypst{\"a}mmen. Diese Beobachtungen lassen einen weiteren, bislang noch nicht bekannten zellul{\"a}ren Rezeptor oder einen von einem zellul{\"a}ren Rezeptor unabh{\"a}ngigen Aufnahme- und Ausbreitungsmechanismus bei Gef{\"a}ßendothelzellen vermuten. Es darf weiterhin als sicher angesehen werden, dass Endothelzellen in der Pathogenese von masernvirusinduzierten Komplikationen, sei es direkt oder indirekt, involviert sind.},
  subject      = {Masern},
  language  = {de}
}
@phdthesis{Andrei2007,
  author    = {Andrei, Horia-Sorin},
  title     = {Infrared photodissociation spectroscopy of ionic hydrocarbons : microsolvation and protonation sites},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-24652},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2007},
  abstract  = {This work has presented a spectroscopic analysis of three types of hydrocarbon cations: two ionized aromatic hydrocarbons, two protonated aromatic hydrocarbons and the cation of a fundamental radical hydrocarbon. The experiments were centered on the proton stretch vibrations of mass-selected complexes of these systems and polar (H2O) and non polar (Ar, N2, CO2) ligands. The experiments have been done in a tandem mass spectrometer coupled with an electron impact ionization ion source; an OPO laser system was used as tunable IR light source. All the proposed dimer structures have been also modeled using quantum chemical calculations (QCC). These calculations have consistently been matched with the experimental results and have enabled clear identification of the spectral features observed. This has enabled the evaluation of thermochemical properties which could not be extracted directly from experiment. The experiments done on complexes of 1-Np+ and Im+ have allowed for the acidity of their various groups to be probed: the shifts in the frequency as well as the enhancement in the intensity of the OH and NH stretch vibrations resulting from the complexation have yielded dependences on both the species (L) and the number (n) of the ligands. OH bound 1-Np+···Ar has been detected for the first time, showing that the REMPI-IRPD method is severely limited with respect to the production of the most stable isomer of a given cationic complex. The detection of c-1-Np+···(N2)n corresponds to the first observation of c-1-Np+ complexes and enables thus direct comparison of both 1-Np+ rotamers. The shift of the NH vibration of Im+···N2(H) yielded the first experimental estimate for the PA of the imidazyl radical. It was also found that the most stable 1-Np+···Ar and Im+···Ar structures differ qualitatively from that of the corresponding neutral dimers (H-bound vs pi-bound), emphasizing the large impact of ionization on the interaction potential and the preferred recognition motif between acidic aromatic molecules (A) and nonpolar ligands. The IRPD spectra of 1-Np+···Ln and Im+···Ln yielded spectroscopic information about the CH, NH and OH stretch vibrations of bare 1-Np+ and Im+. The dependence of the shifts in the frequency of the OH and NH stretch vibrations allows for creating microsolvation models. The spectroscopic results obtained on size-selected 1-NpH+···Ln show that, in the output of the presently used ion source, three classes of 1-NpH+ isomers can be identified: oxonium ions (1-Np protonated at the O atom); carbenium ions obtained by protonation in the para and ortho positions with respect to the OH functional group; carbenium ions obtained by the addition of a proton to well-defined sites on the second naphthalene ring. The spectral identification of these three classes of protonation sites is supported by their different photofragmentation patterns. It was demonstrated that the spectroscopic monitoring of the microsolvation of ImH+ in Ar and N2 together with the QCCs paint a very detailed picture of the microsolvation process, evidencing clear differences between the microsolvation models as function of the PA of the ligands. Important differences have also been identified between the various binding sites, enabling the creation of a clear scale of priorities for occupation of the binding sites during microsolvation. The application of IRPD to the study of microhydrated ImH+ provided for the first time direct spectroscopic information on the properties of the N-H bonds of this biomolecular building block under controlled microhydration. It was demonstrated that, as protonation enhances the acidity of the NH groups, the ability for proton conductivity of ImH+ increases. A very important result is derived from the IRPD spectroscopy of C2H5+···L (L = Ar, N2, CO2, CH4) dimers. The equilibrium geometry of the C2H5+ has long been debated. Now, IRPD spectra were recorded over the range of the CH stretch fundamentals (covering possible sp3 and sp2 hybridization of C). Depending on the ligand species, the spectra are found to be dominated by the fingerprint of two largely different dimer geometries. Using the experimental C2H5+···Ar spectrum and the corresponding QCCs, the structure of the (weakly perturbed) C2H5+ was found to be the nonclassical one, with one proton straddling across the C=C bond of the H2C=CH2. On the other hand, ligands like N2 and CH4 are strongly influencing the geometry, as seen in the spectral signatures of the C2H5+···N2 and C2H5+···CH4, which correspond to the classical [H2CCH3]+. It was thus demonstrated that while the nonclassical C2H5+ is the global minimum on the PES of the free [C2,H5]+, the structure of the C2H5+ can be strongly influenced by the chemical properties of the environment.},
  subject      = {Infrarot},
  language  = {en}
}
@phdthesis{Andreatta2010,
  author    = {Andreatta, Marta},
  title     = {Emotional reactions after event learning : a Rift between Implicit and Explicit Conditioned Valence in Humans Pain Relief Lerning},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-55715},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2010},
  abstract  = {Organismen vermeiden Gefahren und streben nach Belohnungen, um zu {\"u}berleben. Klassische Konditionierung ist ein einfaches Model, das erkl{\"a}rt, wie Tiere und Menschen Ereignisse in Verbindung bringen. Dieses Lernen erm{\"o}glicht Lebewesen Gefahr oder Belohnung direkt vorherzusehen. Normalerweise besteht das Konditionierungsparadigma aus der Pr{\"a}sentation eines neutralen Stimulus zusammen mit einem biologisch bedeutsamen Event (der unkonditionierte Stimulus - US). Aufgrund dieser Assoziation erwirbt der neutrale Stimulus affektive Eigenschaften und wird dann konditionierter Stimulus (CS+) genannt. Wenn der CS+ mit Schmerz w{\"a}hrend der Trainingsphase assoziiert wird, leitet er eine defensive Reaktion, wie z.B. Vermeidung ein. Wenn der CS+ mit einer Belohnung assoziiert wird, leitet er eine appetitive Reaktion, wie z.B. Ann{\"a}herungsreaktionen ein. Interessanterweise haben Tierstudien gezeigt, dass ein konditionierter Stimulus vermieden wurde, wenn er einem aversiven US in der Trainingsphase vorausgegangen war (CS+US; Vorw{\"a}rtskonditionierung). Das deutet darauf hin, dass der CS+ aversive Eigenschaften erlangt hat. Jedoch f{\"u}hrte ein konditionierter Stimulus zu einer Ann{\"a}herung, wenn er in der Trainingsphase auf einen aversiven US folgt (US CS+; R{\"u}ckw{\"a}rtskonditionierung). Das deutet darauf hin, dass der CS+ appetitive Eigenschaften erlangt hat. Kann das Event Timing sowohl aversive als auch appetitive konditionierten Reaktionen auch bei Menschen ausl{\"o}sen, die zu Kognitionen bez{\"u}glich der Assoziationen f{\"a}hig sind? Um diese Fragestellung zu beantworten, wurden vier Studien durchgef{\"u}hrt. Die Studien hatten den gleichen Ablauf, variiert wurde nur die Zeit zwischen CS+ und US (das Interstimulusintervall - ISI - ist als das Zeitintervall zwischen dem Onset des CS+ und dem Onset des US definiert). W{\"a}hrend der Akquisitionsphase (Konditionierung) wurden, zwei einfache geometrische Figuren als konditionierte Stimuli dargeboten. Eine geometrische Figur (der CS+) war immer mit einem leichten schmerzhaften elektrischen Reiz (der aversive US) assoziiert; die andere Figur (der CS-) war nie mit dem elektrischen Reiz assoziiert. In einem between-subjects Design wurde entweder eine Vorw{\"a}rtskonditionierung oder eine R{\"u}ckw{\"a}rtskonditionierung durchgef{\"u}hrt. W{\"a}hrend der Testsphase (Extinktion) wurden CS+ und CS- pr{\"a}sentiert sowie zus{\"a}tzlich eine neue neutrale geometrische Figur pr{\"a}sentiert, die als Kontrollstimulus fungierte; der US wurde in dieser Phase nie dargeboten. Vor und nach der Konditionierung wurden die Probanden sowohl bez{\"u}glich der Valenz (bzw. Unangenehmheit und Angenehmheit) als auch der Erregung (bzw. Ruhe und Aufregung) hinsichtlich der geometrischen Figuren befragt. In der ersten Studie wurde der Schreckreflex (Startle Reflex) als Maß f{\"u}r die implizite Valenz der Stimuli gemessen. Der Schreckreflex ist eine defensive Urreaktion, die aus einem Muskelzucken des Gesichts und des K{\"o}rpers besteht. Dieser Reflex ist durch pl{\"o}tzliche und intensive visuelle, taktile oder akustische Reize evoziert. Einerseits war die Amplitude des Startles bei der Anwesenheit des vorw{\"a}rts CS+ potenziert und das deutet daraufhin, dass der CS+ eine implizite negative Valenz nach der Vorw{\"a}rtskonditionierung erworben hat. Anderseits war die Amplitude des Startles bei der Anwesenheit des r{\"u}ckw{\"a}rts CS+ abgeschw{\"a}cht, was darauf hin deutet, dass der CS+ nach der R{\"u}ckw{\"a}rtskonditionierung eine implizite positive Valenz erworben hat. In der zweiten Studie wurde die oxygenierte Bloodsresponse (BOLD) mit funktioneller Magnetresonanztomographie (fMRI) erhoben, um neuronale Korrelate des Event-Timings zu erfassen. Eine st{\"a}rkere Aktivierung wurde in der Amygdala in Erwiderung auf den vorw{\"a}rts CS+ und im Striatum in Erwiderung auf den r{\"u}ckw{\"a}rts CS+ gefunden. Zum Einen entspricht dies einer Aktivierung des Defensive Motivational Systems, da die Amygdala eine wichtige Rolle beim Angstexpression und Angstakquisition hat. Deshalb wurde der vorw{\"a}rts CS+ als aversiv betrachtet. Zum Anderen entspricht dies einer Aktivierung des Appetitive Motivational System, da das Striatum eine wichtige Rolle bei Belohnung hat. Deshalb wurde der r{\"u}ckw{\"a}rts CS+ als appetitiv betrachtet. In der dritten Studie wurden Aufmerksamkeitsprozesse beim Event-Timing n{\"a}her beleuchtet, indem steady-state visuelle evozierte Potentiale (ssVEP) gemessen wurden. Sowohl der vorw{\"a}rts CS+ als auch der r{\"u}ckw{\"a}rts CS+ zog Aufmerksamkeit auf sich. Dennoch war die Amplitude der ssVEP großer w{\"a}hrend der letzen Sekunden des vorw{\"a}rts CS+, d.h. direkt vor dem aversiven US. Die Amplitude der ssVEP war aber gr{\"o}ßer w{\"a}hrend der ersten Sekunden des r{\"u}ckw{\"a}rts CS+, d.h. kurz nach dem aversiven US. Vermutlich wird die Aufmerksamkeit auf den hinsichtlich des aversiven US informativsten Teil des CS+. Alle Probanden der drei Studien haben den vorw{\"a}rts CS+ und den r{\"u}ckw{\"a}rts CS+ negativer und erregender als den Kontrollstimulus beurteilt. Daher werden die expliziten Ratings vom Event-Timing nicht beeinflusst. Bemerkenswert ist die Dissoziation zwischen den subjektiven Ratings und den physiologischen Reaktionen. Nach der Dual-Prozess Theorie werden die Verhaltensreaktionen des Menschen von zwei Systemen determiniert: einem impulsiv impliziten System, das auf assoziativen Prinzipien beruht, und einem reflektiv expliziten System, das auf der Kenntnis {\"u}ber Fakten und Werte basiert. Wichtig ist, dass die zwei Systeme auf synergetische oder antagonistische Weise agieren k{\"o}nnen. Folglich k{\"o}nnte es sein, dass das impulsive und das reflektive System nach der R{\"u}ckw{\"a}rtskonditionierung antagonistisch arbeiten. Zusammen deuten die vorliegenden Studien daraufhin, dass Event-Timing eine Bestrafung in eine Belohnung umwandeln kann, aber die Probanden erleben den Stimulus assoziiert mit einem aversiven Event als negativ. Diese Dissoziation k{\"o}nnte zum Verst{\"a}ndnis der psychiatrischen St{\"o}rungen wie z.B. Angstst{\"o}rungen oder Drogenabh{\"a}ngigkeit beitragen.},
  subject      = {Gef{\"u}hl},
  language  = {en}
}
@phdthesis{Andlauer2013,
  author    = {Andlauer, Till Felix Malte},
  title     = {Structural and Functional Diversity of Synapses in the Drosophila CNS},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-85018},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2013},
  abstract  = {Large-scale anatomical and functional analyses of the connectivity in both invertebrate and mammalian brains have gained intense attention in recent years. At the same time, the understanding of synapses on a molecular level still lacks behind. We have only begun to unravel the basic mechanisms of how the most important synaptic proteins regulate release and reception of neurotransmitter molecules, as well as changes of synaptic strength. Furthermore, little is known regarding the stoichiometry of presynaptic proteins at different synapses within an organism. An assessment of these characteristics would certainly promote our comprehension of the properties of different synapse types. Presynaptic proteins directly influence, for example, the probability of neurotransmitter release as well as mechanisms for short-term plasticity. We have examined the strength of expression of several presynaptic proteins at different synapse types in the central nervous system of Drosophila melanogaster using immunohistochemistry. Clear differences in the relative abundances of the proteins were obvious on different levels: variations in staining intensities appeared from the neuropil to the synaptic level. In order to quantify these differences, we have developed a ratiometric analysis of antibody stainings. By application of this ratiometric method, we could assign average ratios of presynaptic proteins to different synapse populations in two central relays of the olfactory pathway. In this manner, synapse types could be characterized by distinct fingerprints of presynaptic protein ratios. Subsequently, we used the method for the analysis of aberrant situations: we reduced levels of Bruchpilot, a major presynaptic protein, and ablated different synapse or cell types. Evoked changes of ratio fingerprints were proportional to the modifications we had induced in the system. Thus, such ratio signatures are well suited for the characterization of synapses. In order to contribute to our understanding of both the molecular composition and the function of synapses, we also characterized a novel synaptic protein. This protein, Drep-2, is a member of the Dff family of regulators of apoptosis. We generated drep-2 mutants, which did not show an obvious misregulation of apoptosis. By contrast, Drep-2 was found to be a neuronal protein, highly enriched for example at postsynaptic receptor fields of the input synapses of the major learning centre of insects, the mushroom bodies. Flies mutant for drep-2 were viable but lived shorter than wildtypes. Basic synaptic transmission at both peripheral and central synapses was in normal ranges. However, drep-2 mutants showed a number of deficiencies in adaptive behaviours: adult flies were locomotor hyperactive and hypersensitive towards ethanol-induced sedation. Moreover, the mutant animals were heavily impaired in associative learning. In aversive olfactory conditioning, drep-2 mutants formed neither short-term nor anaesthesia-sensitive memories. We could demonstrate that Drep-2 is required in mushroom body intrinsic neurons for normal olfactory learning. Furthermore, odour-evoked calcium transients in these neurons, a prerequisite for learning, were reduced in drep-2 mutants. The impairment of the mutants in olfactory learning could be fully rescued by pharmacological application of an agonist to metabotropic glutamate receptors (mGluRs). Quantitative mass spectrometry of Drep-2 complexes revealed that the protein is associated with a large number of translational repressors, among them the fragile X mental retardation protein FMRP. FMRP inhibits mGluR-mediated protein synthesis. Lack of this protein causes the fragile X syndrome, which constitutes the most frequent monogenic cause of autism. Examination of the performance of drep-2 mutants in courtship conditioning showed that the animals were deficient in both short- and long-term memory. Drep-2 mutants share these phenotypes with fmrp and mGluR mutants. Interestingly, drep-2; fmrp double mutants exhibited normal memory. Thus, we propose a model in which Drep-2 antagonizes FMRP in the regulation of mGluR-dependent protein synthesis. Our hypothesis is supported by the observation that impairments in synaptic plasticity can arise if mGluR signalling is imbalanced in either direction. We suggest that Drep-2 helps in establishing this balance.},
  subject      = {Taufliege},
  language  = {en}
}
@phdthesis{Anderson2013,
  author    = {Anderson, Philip},
  title     = {Aussagekraft des Instability Severity Index Scores als prognostischer Parameter f{\"u}r den Erfolg der arthroskopischen und offenen modifizierten Bankart-Operation mit Kapselshift : eine retrospektive klinische Untersuchung},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-90757},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2013},
  abstract  = {Im Rahmen der vorliegenden Studie wurde an 220 Patienten, die zwischen 1988 und 2007 im K{\"o}nig-Ludwig-Haus in W{\"u}rzburg durch einen Operateur wegen rezidivierender, {\"u}berwiegend posttraumatischer ventraler Schulterinstabilit{\"a}t offen oder arthroskopisch mittels (modifizierter) Bankart-Prozedur operiert wurden, der „Instability Severity Index Score (ISIS)" so erhoben, wie er aus den pr{\"a}operativen Unterlagen zu ermitteln war. Alle Patienten wurden nach postoperativen Rezidivluxationen befragt und die Schulterfunktion wurde mittels standardisiertem und validiertem Fragebogen durch den „Constant Score" und den „Oxford Shoulder Instability Score" untersucht. Ziel der Studie war es, den von Balg und Boileau 2007 vorgestellten „Instability Severity Index Score" (ISIS) auf seine Aussagekraft hin am vorliegenden Kollektiv zu {\"u}berpr{\"u}fen. Zeitgleich sollten ein Vergleich der offenen mit den arthroskopischen Stabilisierungen sowie eine Analyse der Ursachen der Rezidivluxationen erfolgen. Insgesamt kam es in acht F{\"a}llen zu Rezidivluxationen (3,6 \%). Die offen Operierten wiesen eine Rate von 3,1 \%, die Gruppe der arthroskopisch Operierten 8,7 \% Rezidive auf. Patienten mit weniger oder gleich sechs Punkten im ISIS hatten in 2,7 \% Reluxationen, Patienten mit mehr als sechs Punkten in 8,1 \%. Patienten, die r{\"u}ckblickend gem{\"a}ß der Empfehlung aus dem ISIS operiert wurden, hatten in 5,3 \% Rezidivluxationen. Patienten, die entgegen der Empfehlung operiert wurden, in 3,5 \%. Alle Unterschiede waren statistisch nicht signifikant. In allen Gruppen konnten in den funktionellen Scores sehr gute Ergebnisse mit durchschnittlich {\"u}ber 87 \% im alters- und geschlechtsadaptierten Constant Score und {\"u}ber 42 Punkten im Oxford Shoulder Instability Score ohne signifikante Unterschiede erzielt werden. Von den insgesamt acht Patienten mit Reluxationen lagen von zwei Patienten CT-Untersuchungen nach aufgetretener Reluxation vor. In beiden F{\"a}llen konnten signifikante Glenoidranddefekte gefunden werden. Aus Sicht der erhobenen Daten und der erzielten Ergebnisse ist der ISIS als n{\"u}tzlich zur pr{\"a}operativen Risikobewertung sowie zur Entscheidung {\"u}ber das operative Vorgehen einzusch{\"a}tzen, wobei er keine imperative Handlungsanweisung darstellen sollte. Die Empfehlung zum Korakoidtransfer nach Latarjet ab sieben Punkten im ISIS kann anhand dieser Daten nicht best{\"a}tigt werden. Vielmehr konnte gezeigt werden, dass eine offene Bankart-Operation mit selektivem Kapselshift sehr gute Langzeitergebnisse bez{\"u}glich der Reluxationsraten und der funktionellen Ergebnisse liefert. Im Hinblick auf die erzielten Ergebnisse und Fehleranalysen ist weiterhin festzuhalten, dass bei Verdacht auf einen Glenoiddefekt in der Regel eine CT mit 3D-Rekonstruktion und Seiten-vergleich erfolgen sollte, um die Indikation zum offenen Knochenblocktransfer nicht zu verpassen. Offene und arthroskopische Stabilisierungen k{\"o}nnen bei richtiger Indikationsstellung kurz- und mittelfristig vergleichbar gute Ergebnisse liefern. Langfristig aber scheint das minimal-invasive Vorgehen h{\"o}here Raten an Rezidivluxationen aufzuweisen. Wie auch in dieser Arbeit gezeigt werden konnte, ist ein langer Beobachtungszeitraum bei Studien, die das klinische Ergebnis von Schulterstabilisierungen untersuchen, sehr wichtig, um das wahre Ausmaß an postoperativen Rezidivinstabilit{\"a}ten zu erfassen.},
  subject      = {Schultergelenkverletzung},
  language  = {de}
}
@phdthesis{Anderson2011,
  author    = {Anderson, Christina},
  title     = {Idiosyncratic Facial Movement in Face Perception and Recognition},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-70355},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2011},
  abstract  = {It has been proposed that different features of a face provide a source of information for separate perceptual and cognitive processes. Properties of a face that remain rather stable over time, so called invariant facial features, yield information about a face's identity, and changeable aspects of faces transmit information underlying social communication such as emotional expressions and speech movements. While processing of these different face properties was initially claimed to be independent, a growing body of evidence suggests that these sources of information can interact when people recognize faces with whom they are familiar. This is the case because the way a face moves can contain patterns that are characteristic for that specific person, so called idiosyncratic movements. As a face becomes familiar these idiosyncratic movements are learned and hence also provide information serving face identification. While an abundance of experiments has addressed the independence of invariant and variable facial features in face recognition, little is known about the exact nature of the impact idiosyncratic facial movements have on face recognition. Gaining knowledge about the way facial motion contributes to face recognition is, however, important for a deeper understanding of the way the brain processes and recognizes faces. In the following dissertation three experiments are reported that investigate the impact familiarity of changeable facial features has on processes of face recognition. Temporal aspects of the processing of familiar idiosyncratic facial motion were addressed in the first experiment via EEG by investigating the influence familiar facial movement exerts on event-related potentials associated to face processing and face recognition. After being familiarized with a face and its idiosyncratic movement, participants viewed familiar or unfamiliar faces with familiar or unfamiliar facial movement while their brain potentials were recorded. Results showed that familiarity of facial motion influenced later event-related potentials linked to memory processes involved in face recognition. The second experiment used fMRI to investigate the brain areas involved in processing familiar facial movement. Participants' BOLD-signal was registered while they viewed familiar and unfamiliar faces with familiar or unfamiliar idiosyncratic movement. It was found that activity of brain regions, such as the fusiform gyrus, that underlie the processing of face identity, was modulated by familiar facial movement. Together these two experiments provide valuable information about the nature of the involvement of idiosyncratic facial movement in face recognition and have important implications for cognitive and neural models of face perception and recognition. The third experiment addressed the question whether idiosyncratic facial movement could increase individuation in perceiving faces from a different ethnic group and hence reduce impaired recognition of these other-race faces compared to own-race faces, a phenomenon named the own-race bias. European participants viewed European and African faces that were each animated with an idiosyncratic smile while their attention was either directed to the form or the motion of the face. Subsequently recognition memory for these faces was tested. Results showed that the own-race bias was equally present in both attention conditions indicating that idiosyncratic facial movement was not able to reduce or diminish the own-race bias. In combination the here presented experiments provide further insight into the involvement of idiosyncratic facial motion in face recognition. It is necessary to consider the dynamic component of faces when investigating face recognition because static facial images are not able to provide the full range of information that leads to recognition of a face. In order to reflect the full process of face recognition, cognitive and neural models of face perception and recognition need to integrate dynamic facial features as a source of information which contributes to the recognition of a face.},
  subject      = {Gesicht},
  language  = {en}
}
@phdthesis{Andermann2007,
  author    = {Andermann, Paul},
  title     = {Evaluierung der Intra- und Interobserver-Variabilit{\"a}t bei der 2D-Ultraschall-Schilddr{\"u}senvolumetrie an einem Schilddr{\"u}senphantom - Vergleich zu 3D-Ultraschall-Referenzmessungen an gesunden Probanden},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-23434},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2007},
  abstract  = {Mehrere Autoren haben schon die Intra- und Interobserver-Variabilit{\"a}t bei der Bestimmung des Schilddr{\"u}senvolumens und knotiger Herdbefunde mit Hilfe des zweidimensionalen (2D) Ultraschalls evaluiert. Dar{\"u}ber hinaus wurde {\"u}ber Interobserver-Korrelationen f{\"u}r Schilddr{\"u}senvolumenmessungen berichtet. Es gibt jedoch keine prospektive verblindete Studie, die die Intra- bzw. Interobserver-Variabilit{\"a}t bei der Volumenbestimmung der gesamten Schilddr{\"u}se an gesunden Probanden bzw. einzelner Knoten unterschiedlicher Echogenit{\"a}t an einem Phantom untersucht hat. Die Ergebnisse der Einzelstudien sollen hier vorgestellt und - soweit m{\"o}glich - miteinander verglichen werden. Im Rahmen einer quantitativen Studie mit dem hier pr{\"a}sentierten Schilddr{\"u}senphantom soll die Intra- und Interobserver-Variabilit{\"a}t bei der 2D-Ultraschallvolumetrie einzelner Knoten unterschiedlicher Gr{\"o}ße und Echogenit{\"a}t und der Schilddr{\"u}senlappen evaluiert werden. Da Schilddr{\"u}senknoten wegen des geringeren Volumens und ihrer oft unscharfen Randkontur schwieriger zu entdecken und auszumessen sind als die Gesamtschilddr{\"u}se, soll untersucht werden, welche Gr{\"o}ßenordnungen des Messfehlers auftreten und in welcher Relation sie zueinander stehen. Außerdem soll der methodenimmanente Fehler quantifiziert und detektierbare Volumen{\"a}nderungen erfassbar gemacht werden. Bisher war in der Schilddr{\"u}sensonographie kein geeignetes Phantom verf{\"u}gbar, das kommerziell erh{\"a}ltlich ist und mit dem qualitativ unterschiedliche intrathyreoidale Herdbefunde untersucht werden k{\"o}nnen. Die vorliegende Studie an gesunden Probanden hatte das prim{\"a}re Ziel, die Frage nach der Quantifizierbarkeit von Unsicherheitsfaktoren in der Schilddr{\"u}senvolumetrie durch den konventionellen 2D-Ultraschall im Vergleich zu 3D-Referenzvolumina bei gesunden Erwachsenen m{\"o}glichst exakt zu beantworten und die Untersucherabh{\"a}ngigkeit der Methode zu demonstrieren. Damit soll die Genauigkeit (Richtigkeit und Pr{\"a}zision) der sonographischen Schilddr{\"u}sendiagnostik mathematisch erfasst und eine bessere Bewertungsgrundlage f{\"u}r die Frage nach der Reproduzierbarkeit von Ultraschall-Volumenbestimmungen der Schilddr{\"u}se und ihrer pathologischen Ver{\"a}nderungen geschaffen werden. Hierf{\"u}r wurden m{\"o}glichst aussagekr{\"a}ftige statistische Parameter wie die Intra- und Interobserver-Variabilit{\"a}t, der systematische und zuf{\"a}llige Fehler, der reine Fehler der Messmethode, minimale, sicher detektierbare Volumen{\"a}nderungen und im Rahmen einer multivariaten Reliabilit{\"a}tsanalyse die Reliabilit{\"a}tskoeffizienten untersucht. Ein weiteres Ziel dieser Studie bestand darin, die Reliabilit{\"a}t der in der klinischen Routine benutzten Ellipsoidformel zur Berechnung des Schilddr{\"u}senvolumens zu {\"u}berpr{\"u}fen.},
  language  = {de}
}
@phdthesis{Andelovic2024,
  author    = {Andelovic, Kristina},
  title     = {Characterization of arterial hemodynamics using mouse models of atherosclerosis and tissue-engineered artery models},
  doi       = {10.25972/OPUS-30360},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-303601},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2024},
  abstract  = {Within this thesis, three main approaches for the assessment and investigation of altered hemodynamics like wall shear stress, oscillatory shear index and the arterial pulse wave velocity in atherosclerosis development and progression were conducted: 1. The establishment of a fast method for the simultaneous assessment of 3D WSS and PWV in the complete murine aortic arch via high-resolution 4D-flow MRI 2. The utilization of serial in vivo measurements in atherosclerotic mouse models using high-resolution 4D-flow MRI, which were divided into studies describing altered hemodynamics in late and early atherosclerosis 3. The development of tissue-engineered artery models for the controllable application and variation of hemodynamic and biologic parameters, divided in native artery models and biofabricated artery models, aiming for the investigation of the relationship between atherogenesis and hemodynamics Chapter 2 describes the establishment of a method for the simultaneous measurement of 3D WSS and PWV in the murine aortic arch at, using ultra high-field MRI at 17.6T [16], based on the previously published method for fast, self-navigated wall shear stress measurements in the murine aortic arch using radial 4D-phase contrast MRI at 17.6 T [4]. This work is based on the collective work of Dr. Patrick Winter, who developed the method and the author of this thesis, Kristina Andelovic, who performed the experiments and statistical analyses. As the method described in this chapter is basis for the following in vivo studies and undividable into the sub-parts of the contributors without losing important information, this chapter was not split into the single parts to provide fundamental information about the measurement and analysis methods and therefore better understandability for the following studies. The main challenge in this chapter was to overcome the issue of the need for a high spatial resolution to determine the velocity gradients at the vascular wall for the WSS quantification and a high temporal resolution for the assessment of the PWV without prolonging the acquisition time due to the need for two separate measurements. Moreover, for a full coverage of the hemodynamics in the murine aortic arch, a 3D measurement is needed, which was achieved by utilization of retrospective navigation and radial trajectories, enabling a highly flexible reconstruction framework to either reconstruct images at lower spatial resolution and higher frame rates for the acquisition of the PWV or higher spatial resolution and lower frame rates for the acquisition of the 3D WSS in a reasonable measurement time of only 35 minutes. This enabled the in vivo assessment of all relevant hemodynamic parameters related to atherosclerosis development and progression in one experimental session. This method was validated in healthy wild type and atherosclerotic Apoe-/- mice, indicating no differences in robustness between pathological and healthy mice. The heterogeneous distribution of plaque development and arterial stiffening in atherosclerosis [10, 12], however, points out the importance of local PWV measurements. Therefore, future studies should focus on the 3D acquisition of the local PWV in the murine aortic arch based on the presented method, in order to enable spatially resolved correlations of local arterial stiffness with other hemodynamic parameters and plaque composition. In Chapter 3, the previously established methods were used for the investigation of changing aortic hemodynamics during ageing and atherosclerosis in healthy wild type and atherosclerotic Apoe-/- mice using the previously established methods [4, 16] based on high-resolution 4D-flow MRI. In this work, serial measurements of healthy and atherosclerotic mice were conducted to track all changes in hemodynamics in the complete aortic arch over time. Moreover, spatially resolved 2D projection maps of WSS and OSI of the complete aortic arch were generated. This important feature allowed for the pixel-wise statistical analysis of inter- and intragroup hemodynamic changes over time and most importantly - at a glance. The study revealed converse differences of local hemodynamic profiles in healthy WT and atherosclerotic Apoe-/- mice, with decreasing longWSS and increasing OSI, while showing constant PWV in healthy mice and increasing longWSS and decreasing OSI, while showing increased PWV in diseased mice. Moreover, spatially resolved correlations between WSS, PWV, plaque and vessel wall characteristics were enabled, giving detailed insights into coherences between hemodynamics and plaque composition. Here, the circWSS was identified as a potential marker of plaque size and composition in advanced atherosclerosis. Moreover, correlations with PWV values identified the maximum radStrain could serve as a potential marker for vascular elasticity. This study demonstrated the feasibility and utility of high-resolution 4D flow MRI to spatially resolve, visualize and analyze statistical differences in all relevant hemodynamic parameters over time and between healthy and diseased mice, which could significantly improve our understanding of plaque progression towards vulnerability. In future studies the relation of vascular elasticity and radial strain should be further investigated and validated with local PWV measurements and CFD. Moreover, the 2D histological datasets were not reflecting the 3D properties and regional characteristics of the atherosclerotic plaques. Therefore, future studies will include 3D plaque volume and composition analysis like morphological measurements with MRI or light-sheet microscopy to further improve the analysis of the relationship between hemodynamics and atherosclerosis. Chapter 4 aimed at the description and investigation of hemodynamics in early stages of atherosclerosis. Moreover, this study included measurements of hemodynamics at baseline levels in healthy WT and atherosclerotic mouse models. Due to the lack of hemodynamic-related studies in Ldlr-/- mice, which are the most used mouse models in atherosclerosis research together with the Apoe-/- mouse model, this model was included in this study to describe changing hemodynamics in the aortic arch at baseline levels and during early atherosclerosis development and progression for the first time. In this study, distinct differences in aortic geometries of these mouse models at baseline levels were described for the first time, which result in significantly different flow- and WSS profiles in the Ldlr-/- mouse model. Further basal characterization of different parameters revealed only characteristic differences in lipid profiles, proving that the geometry is highly influencing the local WSS in these models. Most interestingly, calculation of the atherogenic index of plasma revealed a significantly higher risk in Ldlr-/- mice with ongoing atherosclerosis development, but significantly greater plaque areas in the aortic arch of Apoe-/- mice. Due to the given basal WSS and OSI profile in these two mouse models - two parameters highly influencing plaque development and progression - there is evidence that the regional plaque development differs between these mouse models during very early atherogenesis. Therefore, future studies should focus on the spatiotemporal evaluation of plaque development and composition in the three defined aortic regions using morphological measurements with MRI or 3D histological analyses like LSFM. Moreover, this study offers an excellent basis for future studies incorporating CFD simulations, analyzing the different measured parameter combinations (e.g., aortic geometry of the Ldlr-/- mouse with the lipid profile of the Apoe-/- mouse), simulating the resulting plaque development and composition. This could help to understand the complex interplay between altered hemodynamics, serum lipids and atherosclerosis and significantly improve our basic understanding of key factors initiating atherosclerosis development. Chapter 5 describes the establishment of a tissue-engineered artery model, which is based on native, decellularized porcine carotid artery scaffolds, cultured in a MRI-suitable bioreactor-system [23] for the investigation of hemodynamic-related atherosclerosis development in a controllable manner, using the previously established methods for WSS and PWV assessment [4, 16]. This in vitro artery model aimed for the reduction of animal experiments, while simultaneously offering a simplified, but completely controllable physical and biological environment. For this, a very fast and gentle decellularization protocol was established in a first step, which resulted in porcine carotid artery scaffolds showing complete acellularity while maintaining the extracellular matrix composition, overall ultrastructure and mechanical strength of native arteries. Moreover, a good cellular adhesion and proliferation was achieved, which was evaluated with isolated human blood outgrowth endothelial cells. Most importantly, an MRI-suitable artery chamber was designed for the simultaneous cultivation and assessment of high-resolution 4D hemodynamics in the described artery models. Using high-resolution 4D-flow MRI, the bioreactor system was proven to be suitable to quantify the volume flow, the two components of the WSS and the radStrain as well as the PWV in artery models, with obtained values being comparable to values found in literature for in vivo measurements. Moreover, the identification of first atherosclerotic processes like intimal thickening is achievable by three-dimensional assessment of the vessel wall morphology in the in vitro models. However, one limitation is the lack of a medial smooth muscle cell layer due to the dense ECM. Here, the utilization of the laser-cutting technology for the generation of holes and / or pits on a microscale, eventually enabling seeding of the media with SMCs showed promising results in a first try and should be further investigated in future studies. Therefore, the proposed artery model possesses all relevant components for the extension to an atherosclerosis model which may pave the way towards a significant improvement of our understanding of the key mechanisms in atherogenesis. Chapter 6 describes the development of an easy-to-prepare, low cost and fully customizable artery model based on biomaterials. Here, thermoresponsive sacrificial scaffolds, processed with the technique of MEW were used for the creation of variable, biomimetic shapes to mimic the geometric properties of the aortic arch, consisting of both, bifurcations and curvatures. After embedding the sacrificial scaffold into a gelatin-hydrogel containing SMCs, it was crosslinked with bacterial transglutaminase before dissolution and flushing of the sacrificial scaffold. The hereby generated channel was subsequently seeded with ECs, resulting in an easy-to-prepare, fast and low-cost artery model. In contrast to the native artery model, this model is therefore more variable in size and shape and offers the possibility to include smooth muscle cells from the beginning. Moreover, a custom-built and highly adaptable perfusion chamber was designed specifically for the scaffold structure, which enabled a one-step creation and simultaneously offering the possibility for dynamic cultivation of the artery models, making it an excellent basis for the development of in vitro disease test systems for e.g., flow-related atherosclerosis research. Due to time constraints, the extension to an atherosclerosis model could not be achieved within the scope of this thesis. Therefore, future studies will focus on the development and validation of an in vitro atherosclerosis model based on the proposed bi- and three-layered artery models. In conclusion, this thesis paved the way for a fast acquisition and detailed analyses of changing hemodynamics during atherosclerosis development and progression, including spatially resolved analyses of all relevant hemodynamic parameters over time and in between different groups. Moreover, to reduce animal experiments, while gaining control over various parameters influencing atherosclerosis development, promising artery models were established, which have the potential to serve as a new platform for basic atherosclerosis research.},
  subject      = {H{\"a}modynamik},
  language  = {en}
}
@phdthesis{Anany2019,
  author    = {Anany, Mohamed Ahmed Mohamed Mohamed},
  title     = {Enhancement of Toll-like receptor3 (TLR3)-induced death signaling by TNF-like weak inducer of apoptosis (TWEAK)},
  doi       = {10.25972/OPUS-18975},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-189757},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2019},
  abstract  = {Tumor necrosis factor (TNF)-like weak inducer of apoptosis (TWEAK) is a member of the TNF superfamily (TNFSF) and is as such initially expressed as type II class transmembrane glycoprotein from which a soluble ligand form can be released by proteolytic processing. While the expression of TWEAK has been detected at the mRNA level in various cell lines and cell types, its cell surface expression has so far only been documented for dendritic cells, monocytes and interferon-γ stimulated NK cells. The fibroblast growth factor-inducible-14 (Fn14) is a TRAF2-interacting receptor of the TNF receptor superfamily (TNFRSF) and is the only receptor for TWEAK. The expression of Fn14 is strongly induced in a variety of non-hematopoietic cell types after tissue injury. The TWEAK/Fn14 system induces pleiotropic cellular activities such as induction of proinflammatory genes, stimulation of cellular angiogenesis, proliferation, differentiation, migration and in rare cases induction of apoptosis. On the other side, Toll-like receptor3 (TLR3) is one of DNA- and RNA-sensing pattern recognition receptors (PRRs), plays a crucial role in the first line of defense against virus and invading foreign pathogens and cancer cells. Polyinosinic-polycytidylic acid poly(I:C) is a synthetic analog of dsRNA, binds to TLR3 which acts through the adapter TRIF/TICAM1, leading to cytokine secretion, NF-B activation, IRF3 nuclear translocation, inflammatory response and may also elicit the cell death. TWEAK sensitizes cells for TNFR1-induced apoptosis and necroptosis by limiting the availability of protective TRAF2-cIAP1 and TRAF2-cIAP2 complexes, which interact with the TNFR1-binding proteins TRADD and RIPK1. In accordance with the fact that poly(I:C)-induced signaling also involves these proteins, we found enhanced necroptosis-induction in HaCaT and HeLa-RIPK3 by poly(I:C) in the presence of TWEAK (Figure 24). Analysis of a panel of TRADD, FADD, RIPK1 and caspase-8 knockout cells revealed furthermore similarities and differences in the way how these molecules act in cell death signaling by poly(I:C)/TWEAK and TNF and TRAIL. RIPK1 turned out to be essential for poly(I:C)/TWEAK-induced caspase-8-mediated apoptosis but was dispensable for these responses in TNF and TRAIL signaling. Lack of FADD protein abrogated TRAIL- but not TNF- and poly(I:C)-induced necroptosis. Moreover, we observed that both long and short FLIP rescued HaCaT and HeLa-RIPK3 cells from poly(I:C)-induced apoptosis or necroptosis. To sum up, our results demonstrate that TWEAK, which is produced by interferon stimulated myeloid cells, controls the induction of apoptosis and necroptosis by the TLR3 ligand poly(I:C) and may thus contribute to cancer or anti-viral immunity treatment.},
  subject      = {Immunologe},
  language  = {en}
}
@phdthesis{Amthor2005,
  author    = {Amthor, Stephan},
  title     = {Redox properties of Bis-Triarylamines and ligand properties of Thianthrenophane},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-15916},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2005},
  abstract  = {The one electron oxidation potential of ten TAAs with all permutations of Cl , OMe- and Me-substituents in the three p-positions were determined by CV. The half wave potential of the first oxidation wave correlates linearly with the number of Cl- and OMe-substituents. AM1-CISD derived values of the absorption energies are in good agreement with the experiments but differ strongly for the oscillator strengths as well as for neutral compounds and their corresponding mono radical cations. The small solvent dependence of the experimental UV/Vis spectra in CH2Cl2 and MeCN reflects a minor charge transfer character of the electronic transitions. The UV/Vis/NIR spectra of the series of TAAs and their corresponding radical cations and the AM1 computations reveal that even small substituents may lead to strong symmetry breaking and to a modified electronic structure. The spectroscopic properties of a series of four bis-TAA donor-bridge-donor X-B-X dimers, composed of two asymmetric TAA chromophores (monomers) were investigated. UV/vis-, fluorescence and transient absorption spectra were recorded and compared with those of the corresponding X-B monomers. The excited states of the dimers are described as MV states which show, depending on the chemical nature of the bridge, a varying amount of interactions. It was found that superradiant emission only proceeds in the case of weak and medium coupling. Whether the first excited state potential energy surface of the dimers is a single minimum or a double minimum potential depends on the solvent polarity and the electronic coupling. In the latter case, the dimer relaxes in a symmetry broken CT state. The [2.2]paracyclophane bridged dimer is an example for a weakly coupled system, because the spectroscopic behavior is very similar to the corresponding p xylene monomer. In contrast, anthracene as well as p-xylene bridges mediate a stronger coupling and reveal a significant cooperative influence on the optical properties. A series of [2.2]paracylophane bridged bis-TAA MV radical cations X-B-X+ were analyzed by a GMH three-level model which takes two transitions into account: the IV-CT band and the bridge band. From the GMH analysis, one can conclude that the [2.2]paracyclophane moiety is not the limiting factor which governs the intramolecular charge transfer. The electronic interactions are of course smaller than direct conjugation but from the order of magnitude of the couplings of the [2.2]paracyclophane MV species it can be assumed that this bridge is able to mediate significant through-space and through-bond interactions. From the exponential dependence of the electronic coupling V between the two TAA localized states on the distance r between the two redox centers, it was inferred that the HT proceeds via superexchange mechanism. The analysis reveals that even significantly longer conjugated bridges should still mediate significant electronic interactions, because the decay constant of a series of conjugated MV species is small. The absorption properties of a series of bis-TAA-[2.2]paracyclophane dications X+-B-X+ were presented. The localized and the CT transitions of these dications are explained and analyzed by an exciton coupling model which also considers the photophysical properties of the monomeric TAA radical cations. Together with AM1-CISD calculated transition moments, experimental transition moments and transition energies of the bis-TAA dications were used to calculate electronic couplings by a GMH approach. These couplings are a measure for interactions of the excited MV CT states. The modification of the diabatic states reveals similarities of the GMH three-level model and the exciton coupling model. Comparison of the two models shows that the transition moment between the excited mixed-valence states of the dimer equals the dipole moment difference of the ground and the excited bridge state of the corresponding monomer. Thianthrenophane (1) has a cavity which offers enough room to potentially enable endohedral coordination to small ions or molecules. For the complexation of silver(I) perchlorate, the complex stability constants of thianthrenophane logK1=5.45 and of thianthrene logK2=9.16 were determined by UV/Vis titration. Single competition transport experiments with ten metal salts demonstrate a very high selectivity of thianthrenophane as a carrier for silver(I) and a distinctly higher transport rate compared to carriers such as thianthrene and 14-ane-S4. Although the X-ray crystal structure analysis of the polymeric [Ag(1)]ClO4 shows an exohedral coordination to silver(I), the formation of an endohedral [Ag(1)]+ complex is suggested to be the explanation for the unusual carrier selectivity of silver(I) by 1 in bulk liquid membrane.},
  subject      = {Triarylamine},
  language  = {en}
}
@phdthesis{Amslinger2012,
  author    = {Amslinger, Barbara},
  title     = {Isolierung, Totalsynthese, Stereostruktur und -dynamik neuartiger mono- und dimerer Naphthylisochinoline},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-76156},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2012},
  abstract  = {Nach wie vor ist die Zahl der Malaria-Neuerkrankungen mit ca. 500 Millionen Menschen weltweit sehr besorgniserregend. Durch zunehmende Resistenzen der Erreger gegen zahlreiche Arzneimittel wird die Situation zus{\"a}tzlich versch{\"a}rft. Daher ist die Suche und Entwicklung neuartiger Medikamente wichtiger denn je. Die Natur ist immer noch das gr{\"o}ßte Reservoir an neuen Wirkstoffen, welche als Leitstrukturen f{\"u}r Arzneistoffe fungieren. In den letzten Jahren wurde eine große Zahl neuartiger, biologisch aktiver Naturstoffe identifiziert und hinsichtlich ihres Potenzials f{\"u}r eine pharmazeutische Weiterentwicklung analysiert. Die Naphthylisochinolin-Alkaloide geh{\"o}ren zu solch einer vielversprechenden Wirkstoffklasse, da sie sich v.a. durch ihre hervorragenden pharmakologischen Eigenschaften auszeichnen. K{\"u}rzlich wurden die ersten N,C-gekuppelten Naphthyldihydroisochinolin-Alkaloide, Ancistrocladinium A und B, entdeckt. Diese Verbindungen weisen als strukturelle Besonderheit eine außergew{\"o}hnliche Iminium-Aryl-Achse auf und besitzen zudem exzellente anti-infektive Aktivit{\"a}ten, insbesondere gegen den Erreger der Orientbeule, Leishmania major. Ziel der vorliegenden Dissertation war die Synthese neuartiger sterisch gehinderter und strukturell vereinfachter Naphthylisochinoline f{\"u}r weiterf{\"u}hrende Struktur-Aktivit{\"a}ts-Beziehungen (SAR-Studien) und die stereochemische Analyse dieser Verbindungen. Zudem sollte eine Syntheseroute zu den neuartigen dimeren C,C-gekuppelten Naphthylisochinolin-Alkaloiden Shuangancistrotectorin A und B entwickelt werden.},
  subject      = {Totalsynthese},
  language  = {de}
}
@phdthesis{Amschler2010,
  author    = {Amschler, Katharina},
  title     = {Sensibilisierung von Melanomzellen gegen{\"u}ber Zytostatika durch zwei verschiedene Mechanismen der NF-kB-Inhibition},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-56342},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2010},
  abstract  = {Die vorliegende Arbeit zeigt eine M{\"o}glichkeit auf, die bisher meist erfolglose Chemotherapie des malignen Melanoms zu verbessern: Durch Inhibition des Transkriptionsfaktors NF-kB, der f{\"u}r die Regulation vieler tumorrelevanter Gene verantwortlich ist, konnten die Tumorzellen gegen{\"u}ber der Wirkung von Zytostatika sensibilisiert werden. Zun{\"a}chst wurden acht verschiedene Melanomzellen in Bezug auf ihre NF-kB-Aktivit{\"a}t und der Expression NF-kB-regulierter Proteine vergleichen. Es konnte gezeigt werden, dass die Mehrzahl der Melanomzellen {\"u}ber konstitutive Aktivit{\"a}t von NF-κB verf{\"u}gt. Dabei bestand kein eindeutiger Zusammenhang zwischen der Expression NF-kB-regulierter Proteine und der Aktivit{\"a}t dieses Transkriptionsfaktors im Kern, was komplexe Regulationsmechanismen bei der Transkription und Translation vermuten l{\"a}sst. Anhand einer ausgew{\"a}hlten Melanomzelllinie konnte gezeigt werden, dass zwei verschiedene NF-kB-Inhibitoren, der Proteasom-Inhibitor Bortezomib und der neue IKK-Inhibitor KINK-1 die Aktivit{\"a}t von NF-kB deutlich hemmen. Beim Vergleich beider NF-kB-Inhibitoren ließen sich unerwartet verschiedene molekulare Wirkungsmechanismen nachweisen: W{\"a}hrend Bortezomib konzentrationsabh{\"a}ngig eine sehr starke Induktion von NOXA, eine Induktion von p53 sowie eine Abnahme von Cyclin D1 bewirkte, zeigte KINK-1 seine Effekte vor allem in der Reduktion von Chemokinen wie IL-8 und MCP-1. Passend zur Ver{\"a}nderung der Expression zellzyklus-relevanter Proteine hatte Bortezomib einen st{\"a}rkeren Effekt auf den Zellzyklus als KINK-1. Beide Inhibitoren wurden mit verschiedenen Zytostatika kombiniert und konnten einerseits die Apoptoseinduktion durch Zytostatika verst{\"a}rken und andererseits die durch Zytostatika reduzierte Invasion weiter reduzieren. Allerdings zeigte sich bei der Untersuchung tumorrelevanter Chemokine, dass KINK-1 im Gegensatz zu Bortezomib synergistische Effekte mit Camptothecin und Doxorubicin aufweist. Trotz molekularer Unterschiede bewirkten beide NF-kB-Inhibitoren vergleichbare funktionelle Effekte auf zellul{\"a}rer Ebene. Dies galt auch f{\"u}r ein pr{\"a}klinisches in-vivo-Modell, in dem die experimentelle Lungenmetastasierung von B16F10-Melanomzellen in M{\"a}usen ermittelt wurde: Hier wurden die M{\"a}use mit Camptothecin, KINK-1 und Bortezomib allein im Vergleich zu den jeweiligen Kombinationen aus Zytostatikum und NF-kB-Inhibitor behandelt. Beide Kombinationen zeigten eine signifikante Reduktion des Lungengewichts im Vergleich zu Camptothecin allein. Diese Arbeit konnte also den Nutzen aus NF-kB-Inhibition in Kombination mit Zytostatika f{\"u}r die hier verwendeten Substanzen bekr{\"a}ftigen und dabei einige molekulare Unterschiede aufdecken.},
  subject      = {Apoptosis},
  language  = {de}
}
@phdthesis{Amini2024,
  author    = {Amini, Emad},
  title     = {How central and peripheral clocks and the neuroendocrine system interact to time eclosion behavior in \(Drosophila\) \(melanogaster\)},
  doi       = {10.25972/OPUS-36130},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-361309},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2024},
  abstract  = {To grow larger, insects must shed their old rigid exoskeleton and replace it with a new one. This process is called molting and the motor behavior that sheds the old cuticle is called ecdysis. Holometabolic insects have pupal stages in between their larval and adult forms, during which they perform metamorphosis. The pupal stage ends with eclosion, i.e., the emergence of the adult from the pupal shell. Insects typically eclose at a specific time during the day, likely when abiotic conditions are at their optimum. A newly eclosed insect is fragile and needs time to harden its exoskeleton. Hence, eclosion is regulated by sophisticated developmental and circadian timing mechanisms. In Drosophila melanogaster, eclosion is limited to a daily time window in the morning, regarded as the "eclosion gate". In a population of laboratory flies entrained by light/dark cycles, most of the flies eclose around lights on. This rhythmic eclosion pattern is controlled by the circadian clock and persists even under constant conditions. Developmental timing is under the control of complex hormonal signaling, including the steroid ecdysone, insulin-like peptides, and prothoracicotropic hormone (PTTH). The interactions of the central circadian clock in the brain and a peripheral clock in the prothoracic gland (PG) that produces ecdysone are important for the circadian timing of eclosion. These two clocks are connected by a bilateral pair of peptidergic PTTH neurons (PTTHn) that project to the PG. Before each molt, the ecdysone level rises and then falls shortly before ecdysis. The falling ecdysone level must fall below a certain threshold value for the eclosion gate to open. The activity of PTTHn is inhibited by short neuropeptide F (sNPF) from the small ventrolateral neurons (sLNvs) and inhibition is thought to lead to a decrease in ecdysone production. The general aim of this thesis is to further the understanding of how the circadian clock and neuroendocrinal pathways are coordinated to drive eclosion rhythmicity and to identify when these endocrinal signaling pathways are active. In Chapter I, a series of conditional PTTHn silencing-based behavioral assays, combined with neuronal activity imaging techniques such as non-invasive ARG-Luc show that PTTH signaling is active and required shortly before eclosion and may serve to phase-adjust the activity of the PG at the end of pupal development. Trans-synaptic anatomical stainings identified the sLNvs, dorsal neurons 1 (DN1), dorsal neurons 2 (DN2), and lateral posterior neurons (LPNs) clock neurons as directly upstream of the PTTHn. Eclosion motor behavior is initiated by Ecdysis triggering hormone (ETH) which activates a pair of ventromedial (Vm) neurons to release eclosion hormone (EH) which positively feeds back to the source of ETH, the endocrine Inka cells. In Chapter II trans-synaptic tracing showed that most clock neurons provide input to the Vm and non-canonical EH neurons. Hence, clock can potentially influence the ETH/EH feedback loop. The activity profile of the Inka cells and Vm neurons before eclosion is described. Vm and Inka cells are active around seven hours before eclosion. Interestingly, all EH neurons appear to be exclusively peptidergic. In Chapter III, using chemoconnectomics, PTTHns were found to express receptors for sNPF, allatostatin A (AstA), allatostatin C (AstC), and myosuppressin (Ms), while EH neurons expressed only Ms and AstA receptors. Eclosion assays of flies with impaired AstA, AstC, or Ms signaling do not show arrhythmicity under constant conditions. However, optogenetic activation of the AstA neurons strongly suppresses eclosion. Chapter IV focuses on peripheral ventral' Tracheal dendrite (v'Td) and class IV dendritic arborization (C4da) neurons. The C4da neurons mediate larval light avoidance through endocrine PTTH signaling. The v'Td neurons mainly receive O2/CO2 input from the trachea and are upstream of Vm neurons but are not required for eclosion rhythmicity. Conditional ablation of the C4da neurons or torso (receptor of PTTH) knock-out in the C4da neurons impaired eclosion rhythmicity. Six to seven hours before eclosion, PTTHn, C4da, and Vm neurons are active based on ARG-Luc imaging. Thus, C4da neurons may indirectly connect the PTTHn to the Vm neurons. In summary, this thesis advances our knowledge of the temporal activity and role of PTTH signaling during pupal development and rhythmic eclosion. It further provides a comprehensive characterization of the synaptic and peptidergic inputs from clock neurons to PTTHn and EH neurons. AstA, AstC, and Ms are identified as potential modulators of eclosion circuits and suggest an indirect effect of PTTH signaling on EH signaling via the peripheral sensory C4da neurons.},
  subject      = {Neuroendokrines System},
  language  = {en}
}
@phdthesis{Aminake2012,
  author    = {Aminake, Makoah Nigel},
  title     = {Towards malaria combination therapy: Characterization of hybrid molecules for HIV/malaria combination therapy and of thiostrepton as a proteasome-targeting antibiotic with a dual mode of action},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-71841},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2012},
  abstract  = {Malaria and HIV are among the most important global health problems of our time and together are responsible for approximately 3 million deaths annually. These two diseases overlap in many regions of the world including sub-Saharan Africa, Southeast Asia and South America, leading to a higher risk of co-infection. In this study, we generated and characterized hybrid molecules to target P. falciparum and HIV simultaneously for a potential HIV/malaria combination therapy. Hybrid molecules were synthesized by covalent fusion between azidothymidine (AZT) and dihydroartemisinin (DHA), tetraoxane or chloroquine (CQ); and a small library was generated and tested for antiviral and antimalarial activity. Our data suggest that dihyate is the most potent molecule in vitro, with antiplasmodial activity comparable to that of DHA (IC50 = 26 nM, SI > 3000), a moderate activity against HIV (IC50 = 2.9 µM; SI > 35) and safe to HeLa cells at concentrations used in the assay (CC50 > 100 µM). Pharmacokinetic studies further revealed that dihyate is metabolically unstable and is cleaved following an O-dealkylation once in contact with cytochrome P450 enzymes. The later further explains the uneffectiveness of dihyate against the CQ-sensitive P. berghei N strain in mice when administered by oral route at 20 mg/kg. Here, we report on a first approach to develop antimalarial/anti-HIV hybrid molecules and future optimization efforts will aim at producing second generation hybrid molecules to improve activity against HIV as well as compound bioavailability. With the emergence of resistant parasites against all the counterpart drugs of artemisinin derivatives used in artemisinin based combination therapies (ACTs), the introduction of antibiotics in the treatment of malaria has renewed interest on the identification of antibiotics with potent antimalarial properties. In this study we also investigated the antiplasmodial potential of thiostrepton and derivatives, synthesized using combinations of tail truncation, oxidation, and addition of lipophilic thiols to the terminal dehydroamino acid. We showed that derivatives SS231 and SS234 exhibit a better antiplasmodial activity (IC50 = 1 µM SI > 59 and SI > 77 respectively) than thiostrepton (IC50 = 8.95 µM, SI = 1.7). The antiplasmodial activity of these derivatives was observed at concentrations which are not hemolytic and non-toxic to human cell lines. Thiostrepton and derivatives appeared to exhibit transmission blocking properties when administered at their IC50 or IC90 concentrations and our data also showed that they attenuate proteasome activity of Plasmodium, which resulted in an accumulation of ubiquitinated proteins after incubation with their IC80 concentrations. Our results indicate that the parasite's proteasome could be an attractive target for therapeutic intervention. In this regard, thiostrepton derivatives are promising candidates by dually acting on two independent targets, the proteasome and the apicoplast, with the capacity to eliminate both intraerythrocytic asexual and transmission stages of the parasite. To further support our findings, we evaluated the activity of a new class of antimalarial and proteasome inhibitors namely peptidyl sulfonyl fluorides on gametocyte maturation and analogues AJ34 and AJ38 were able to completely suppress gametocytogenesis at IC50 concentrations (0.23 µM and 0.17 µM respectively) suggesting a strong transmission blocking potential. The proteasome, a major proteolytic complex, responsible for the degradation and re-cycling of non-functional proteins has been studied only indirectly in P. falciparum. In addition, an apparent proteasome-like protein with similarity to bacterial ClpQ/hslV threonine-peptidases was predicted in the parasite. Antibodies were generated against the proteasome subunits alpha type 5 (α5-SU), beta type 5 (β5-SU) and pfhslV in mice and we showed that the proteasome is expressed in both sexual and asexual blood stages of P. falciparum, where they localize in the nucleus and in the cytoplasm. However, expression of PfhslV was only observed in trophozoites and shizonts. The trafficking of the studied proteasome subunits was further investigated by generating parasites expressing GFP tagged proteins. The expression of α5-SU-GFP in transgenic parasite appeared to localize abundantly in the cytoplasm of all blood stages, and no additional information was obtained from this parasite line. In conclusion, our data highlight two new tools towards combination therapy. Hybrid molecules represent promising tools for the cure of co-infected individuals, while very potent antibiotics with a wide scope of activities could be useful in ACTs by eliminating resistant parasites and limiting transmission of both, resistances and disease.},
  subject      = {Malaria},
  language  = {en}
}
@phdthesis{Ames2015,
  author    = {Ames, Christopher},
  title     = {Molecular Beam Epitaxy of 2D and 3D HgTe, a Topological Insulator},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-151136},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2015},
  abstract  = {In the present thesis the MBE growth and sample characterization of HgTe structures is investigated and discussed. Due to the first experimental discovery of the quantum Spin Hall effect (QSHE) in HgTe quantum wells, this material system attains a huge interest in the spintronics society. Because of the long history of growing Hg-based heterostructures here at the Experimentelle Physik III in W{\"u}rzburg, there are very good requirements to analyze this material system more precisely and in new directions. Since in former days only doped HgTe quantum wells were grown, this thesis deals with the MBE growth in the (001) direction of undoped HgTe quantum wells, surface located quantum wells and three dimensional bulk layers. All Hg-based layers were grown on CdTe substrates which generate strain in the layer stack and provide therefore new physical effects. In the same time, the (001) CdTe growth was investigated on n-doped (001) GaAs:Si because the Japanese supplier of CdTe substrates had a supply bottleneck due to the Tohoku earthquake and its aftermath in 2011. After a short introduction of the material system, the experimental techniques were demonstrated and explained explicitly. After that, the experimental part of this thesis is displayed. So, the investigation of the (001) CdTe growth on (001) GaAs:Si is discussed in chapter 4. Firstly, the surface preparation of GaAs:Si by oxide desorption is explored and analyzed. Here, rapid thermal desorption of the GaAs oxide with following cool down in Zn atmosphere provides the best results for the CdTe due to small holes at the surface, while e.g. an atomic flat GaAs buffer deteriorates the CdTe growth quality. The following ZnTe layer supplies the (001) growth direction of the CdTe and exhibits best end results of the CdTe for 30 seconds growth time at a flux ratio of Zn/Te ~ 1/1.2. Without this ZnTe layer, CdTe will grow in the (111) direction. However, the main investigation is here the optimization of the MBE growth of CdTe. The substrate temperature, Cd/Te flux ratio and the growth time has to be adjusted systematically. Therefore, a complex growth process is developed and established. This optimized CdTe growth process results in a RMS roughness of around 2.5 nm and a FWHM value of the HRXRD w-scan of 150 arcsec. Compared to the literature, there is no lower FWHM value traceable for this growth direction. Furthermore, etch pit density measurements show that the surface crystallinity is matchable with the commercial CdTe substrates (around 1x10^4 cm^(-2)). However, this whole process is not completely perfect and offers still room for improvements. The growth of undoped HgTe quantum wells was also a new direction in research in contrast to the previous n-doped grown HgTe quantum wells. Here in chapter 5, the goal of very low carrier densities was achieved and therefore it is now possible to do transport experiments in the n - and p - region by tuning the gate voltage. To achieve this high sample quality, very precise growth of symmetric HgTe QWs and their HRXRD characterization is examined. Here, the quantum well thickness can now determined accurate to under 0.3 nm. Furthermore, the transport analysis of different quantum well thicknesses shows that the carrier density and mobility increase with rising HgTe layer thickness. However, it is found out that the band gap of the HgTe QW closes indirectly at a thickness of 11.6 nm. This is caused by the tensile strained growth on CdTe substrates. Moreover, surface quantum wells are studied. These quantum wells exhibit no or a very thin HgCdTe cap. Though, oxidization and contamination of the surface reduces here the carrier mobility immensely and a HgCdTe layer of around 5 nm provides the pleasing results for transport experiments with superconductors connected to the topological insulator [119]. A completely new achievement is the realization of MBE growth of HgTe quantum wells on CdTe/GaAs:Si substrates. This is attended by the optimization of the CdTe growth on GaAs:Si. It exposes that HgTe quantum wells grown in-situ on optimized CdTe/GaAs:Si show very nice transport data with clear Hall plateaus, SdH oscillations, low carrier densities and carrier mobilities up to 500 000 cm^2/Vs. Furthermore, a new oxide etching process is developed and analyzed which should serve as an alternative to the standard HCl process which generates volcano defects at some time. However, during the testing time the result does not differ in Nomarski, HRXRD, AFM and transport measurements. Here, long-time tests or etching and mounting in nitrogen atmosphere may provide new elaborate results. The main focus of this thesis is on the MBE growth and standard characterization of HgTe bulk layers and is discussed in chapter 6. Due to the tensile strained growth on lattice mismatched CdTe, HgTe bulk opens up a band gap of around 22 meV at the G-point and exhibits therefore its topological surface states. The analysis of surface condition, roughness, crystalline quality, carrier density and mobility via Nomarski, AFM, XPS, HRXRD and transport measurements is therefore included in this work. Layer thickness dependence of carrier density and mobility is identified for bulk layer grown directly on CdTe substrates. So, there is no clear correlation visible between HgTe layer thickness and carrier density or mobility. So, the carrier density is almost constant around 1x10^11 cm^(-2) at 0 V gate voltage. The carrier mobility of these bulk samples however scatters between 5 000 and 60 000 cm^2/Vs almost randomly. Further experiments should be made for a clearer understanding and therefore the avoidance of unusable bad samples.But, other topological insulator materials show much higher carrier densities and lower mobility values. For example, Bi2Se3 exhibits just density values around 1019 cm^(-2) and mobility values clearly below 5000 cm2/Vs. The carrier density however depends much on lithography and surface treatment after growth. Furthermore, the relaxation behavior and critical thickness of HgTe grown on CdTe is determined and is in very good agreement with theoretical prediction (d_c = 155 nm). The embedding of the HgTe bulk layer between HgCdTe layers created a further huge improvement. Similar to the quantum well structures the carrier mobility increases immensely while the carrier density levels at around 1x10^11 cm^(-2) at 0 V gate voltage as well. Additionally, the relaxation behavior and critical thickness of these barrier layers has to be determined. HgCdTe grown on commercial CdTe shows a behavior as predicted except the critical thickness which is slightly higher than expected (d_c = 850 nm). Otherwise, the relaxation of HgCdTe grown on CdTe/GaAs:Si occurs in two parts. The layer is fully strained up to 250 nm. Between 250 nm and 725 nm the HgCdTe film starts to relax randomly up to 10 \%. The relaxation behavior for thicknesses larger than 725 nm occurs than linearly to the inverse layer thickness. A explanation is given due to rough interface conditions and crystalline defects of the CdTe/GaAs:Si compared to the commercial CdTe substrate. HRXRD and AFM data support this statement. Another point is that the HgCdTe barriers protect the active HgTe layer and because of the high carrier mobilities the Hall measurements provide new transport data which have to be interpreted more in detail in the future. In addition, HgTe bulk samples show very interesting transport data by gating the sample from the top and the back. It is now possible to manipulate the carrier densities of the top and bottom surface states almost separately. The back gate consisting of the n-doped GaAs substrate and the thick insulating CdTe buffer can tune the carrier density for Delta(n) ~ 3x10^11 cm^(-2). This is sufficient to tune the Fermi energy from the p-type into the n-type region [138]. In this thesis it is shown that strained HgTe bulk layers exhibit superior transport data by embedding between HgCdTe barrier layers. The n-doped GaAs can here serve as a back gate. Furthermore, MBE growth of high crystalline, undoped HgTe quantum wells shows also new and extended transport output. Finally, it is notable that due to the investigated CdTe growth on GaAs the Hg-based heterostructure MBE growth is partially independent from commercial suppliers.},
  subject      = {Quecksilbertellurid},
  language  = {en}
}
@phdthesis{Amelingmeier2022,
  author    = {Amelingmeier, Florian},
  title     = {Identifizierung und Untersuchung TOP-mRNA - bindender Faktoren},
  doi       = {10.25972/OPUS-28923},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-289231},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2022},
  abstract  = {Im Zellkern eukaryotischer Zellen werden Gene in mRNAs transkribiert, welche umfangreich prozessiert und aus dem Zellkern exportiert werden. Im Zytoplasma erfolgt die Translation der mRNAs in Proteine, ein Prozess, welcher viel Energie ben{\"o}tigt und daher mittels vielf{\"a}ltiger Mechanismen streng reguliert wird. Ein Beispiel hierf{\"u}r stellt die Klasse der TOP-mRNAs dar, eine RNA-Spezies, welche haupts{\"a}chlich Transkripte von Genen umfasst, die selbst in die Translation involviert sind. Die prominentesten Vertreter dieser Klasse sind die Proteine der kleinen und großen ribosomalen Untereinheiten. TOP-mRNAs zeichnen sich durch ein gemeinsames Sequenz-Motiv am Anfang Ihrer 5'-UTR aus, welches aus einem Pyrimidinstrang besteht und unmittelbar nach dem Cap mit einem Cytosin beginnt. Dieses allen TOP-RNAs gemeinsame Motiv erm{\"o}glicht die zeitgleiche Translationskontrolle dieser RNA-Klasse. So kann die Translation der TOP-mRNAs unter Stressbedingungen wie z.B. N{\"a}hrstoffmangel koordiniert inhibiert werden, wodurch Energie eingespart wird. Bereits lange wird nach einem Regulator gesucht, der an dieses TOP-Motiv bindet und die koordinierte Regulation erm{\"o}glicht. Man kann sich hier einen Inhibitor oder auch einen Aktivator vorstellen. Verschiedene Proteine wurden bereits in Erw{\"a}gung gezogen. In dieser Arbeit wurde das Protein TIAR mittels Massenspektrometrie als TOP-interagierender Faktor identifiziert und dessen Bindungseigenschaften mit dem TOP-Motiv durch Shift Assays untersucht. Hierbei konnten Minimalkonstrukte verschiedener Organismen sowie RNA-TOP - Sequenzen identifiziert werden, welche sich f{\"u}r Strukturanalysen eignen w{\"u}rden. Als weiterer TOP-interagierender Faktor wurde {\"u}ber verschiedene sequenzielle Reinigungsschritte das Protein 14-3-3ε identifiziert. Weiterhin wurden die TOP-Motiv-bindenden Proteine LARP1 und LARP7 auf Ihre Bindungseigenschaften mit Ihren Zielsequenzen untersucht. W{\"a}hrend gezeigt werden konnte, dass LARP1 einen inhibierenden Einfluss auf TOP-RNAs hat, wurde in weiteren Shift-Assays die Bindungseigenschaften von LARP7 mit 7SK untersucht, wobei ebenfalls ein minimales LARP7-Konstrukt sowie 7SK-Konstrukte f{\"u}r Strukturanalysen identifiziert werden konnten. Weiterhin konnte gezeigt werden, dass verschiedene Substanzen wie tRNA und Arginin einen starken Einfluss auf die LARP7-7SK - Interaktion aus{\"u}ben, welcher in weiteren Studien ber{\"u}cksichtigt werden sollte.},
  subject      = {Proteinbiosynthese},
  language  = {de}
}
@phdthesis{Amatobi2022,
  author    = {Amatobi, Kelechi Michael},
  title     = {Circadian clocks determine transport and membrane lipid oscillation in \(Drosophila\) hemolymph in complex interactions between nutrient-type, photic conditions and feeding behaviour},
  doi       = {10.25972/OPUS-24446},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-244462},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2022},
  abstract  = {The interaction between circadian clocks and metabolism is of increasing interest, since clock dysfunction often correlates with metabolic pathologies. Many research articles have been published analysing the impact of factors such as circadian clock, light, feeding time and diet-type on energy homeostasis in various tissues/organs of organisms with most of the findings done in mammals. Little is known about the impact of circadian clock and the above-mentioned factors on circulating lipids, especially the transport form of lipids - diacylglycerol (DG) and membrane lipids such as phosphatidylethanolamine (PE) and phosphatidylcholine (PC) in the Drosophila hemolymph. The fruit fly Drosophila is a prime model organism in circadian, behaviour and metabolism research. To study the role of circadian clock and behaviour in metabolism, we performed an extensive comparative hemolymph lipid (diacylglycerol: DG, phosphatidylethanolamine: PE, phosphatidylcholine: PC) analysis using ultra performance liquid chromatography coupled to time-of-flight mass spectrometry (UPLC-MS) between wild-type flies (WTCS) and clock disrupted mutants (per01). In addition, clock controlled food intake- feeding behaviour was investigated. Time-dependent variation of transport (DG) and membrane lipids (PE and PC) were not rhythmic in WTCS under constant darkness and in per01 under LD, suggesting an impact of light and clock genes on daily lipid oscillations. Day-time and night-time restriction of food led to comparable lipid profiles, suggesting that lipid oscillations are not exclusively entrained by feeding but rather are endogenously regulated. Ultradian oscillations in lipid levels in WTCS under LD were masked by digested fatty acids since lipid levels peaked more robustly at the beginning and end of light phase when flies were fed a lipid- and protein-free diet. These results suggest that metabolite (DG, PE and PC) oscillation is influenced by complex interactions between nutrient-type, photic conditions, circadian clock and feeding time. In conclusion, the results of this thesis suggest that circadian clocks determine transport and membrane lipid oscillation in Drosophila hemolymph in complex interactions between nutrient-type, photic conditions and feeding behaviour.},
  subject      = {Pharmaceutische Biologie},
  language  = {en}
}
@phdthesis{Amari2003,
  author    = {Amari, Feriel},
  title     = {Magnetresonanzangiographie der Becken- und Beingef{\"a}ße},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-4559},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2003},
  abstract  = {In einem Zeitraum von Oktober 1997 bis Mai 1998 werden an 19 Patienten 22 Untersuchungen der Becken- und Bein-Arterien sowohl in MRA-Technik als auch als i.a. DSA durchgef{\"u}hrt. Hierbei finden im Rahmen der MRA-Untersuchung in allen F{\"a}llen die zeitaufgel{\"o}ste, Kontrastmittel-unterst{\"u}tzte 3d-Flash-Sequenz und die EKG-getriggerte 2d-Flash-Multivenc-Pha-senkontrast-Sequenz Anwendung. Beide Methoden werden in der Diagnostik der pAVK von der Aortenbifurkation bis zum distalen Unterschenkel getestet und in 3 F{\"a}llen im Rahmen einer periinterventionellen Kontrolle vor und nach PTA eingesetzt. Das Patientenkollektiv setzt sich ausnahmslos aus Patienten mit pAVK zusammen, die h{\"a}ufig Nebenbefunde wie zum Beispiel einen Diabetes mellitus oder eine Niereninsuffizienz aufweisen. Die Auswertung der Angiographien erfolgt durch die Zuordnung der verschiedenen arte-riellen Abschnitte zu verschiedenen Stenosegraden und dem anschließenden statistischen Ver-gleich der Befunde der MRA und der i.a.DSA. Als Ergebnisse erhalten wir f{\"u}r die Kontrastmittel-unterst{\"u}tzte MRA eine {\"U}bereinstim-mungsrate mit der i.a. DSA von 79\% sowie eine Sensitivit{\"a}t von 96,7\% und eine Spezifit{\"a}t von 97\% f{\"u}r die Abbildung h{\"a}modynamisch relevanter Stenosen. Die Sensitivit{\"a}t f{\"u}r die Detektion von Verschl{\"u}ssen betr{\"a}gt 97,8\% und die entsprechende Spezifit{\"a}t 99,2\%. Die Phasenkontrast-MRA zeigt im Vergleich mit der i.a.DSA eine schw{\"a}chere {\"U}berein-stimmungsrate von 65,4\% sowie eine Sensitivit{\"a}t von 88,3\% und eine Spezifit{\"a}t von 85,6\% f{\"u}r die Darstellung h{\"a}modynamisch relevanter Stenosen. F{\"u}r die Diagnose eines Gef{\"a}ßverschlus-ses ist die Sensitivit{\"a}t 89\% und die Spezifit{\"a}t 91,8\%. Als Schlußfolgerung wird festgestellt, daß die MRA eine nichtinvasive, zur i.a.DSA {\"a}qui-valente Untersuchungsmethode darstellt, die bei Kontraindikationen gegen die i.a.DSA einge-setzt werden kann. Im Vergleich zur Phasenkontrast-MRA ist die Kontrastmittel-unterst{\"u}tzte MRA sowohl ein schnelleres als auch ein pr{\"a}ziseres Verfahren zur Diagnostik von Gef{\"a}ßl{\"a}sio-nen der Becken-Bein-Arterien und bietet den Vorteil der 3-dimensionalen Darstellung. Die Phasenkontrast-MRA ist insbesondere durch die einfache Durchf{\"u}hrbarkeit und die fehlende Invasivit{\"a}t ebenfalls als Verfahren zur Diagnostik der peripheren AVK denkbar, jedoch ist zur exakten Stenosegraduierung im Bereich der L{\"a}sion eine nachgeschaltete Untersuchung mit weiteren Methoden n{\"o}tig. Die MRA kann in der postinterventionellen, angiographischen Kontrolle eingesetzt werden. F{\"u}r die Empfehlung zum routinem{\"a}ßigen Einsatz in diesem Bereich sind jedoch Studien mit gr{\"o}ßeren Fallzahlen n{\"o}tig. In naher Zukunft l{\"a}ßt sich die MRA-Technik durch die Entwicklung von leistungsf{\"a}hi-geren Gradientenspulensystemen, neuen Prototypen von Oberfl{\"a}chenspulen, intelligenteren Nachverarbeitungs-Algorhytmen und Blutpool-Kontrastmitteln noch weiter optimieren. Die Evolution der MRA-Technik wird ihre Integration in die Routinediagnostik vereinfachen und ihr Indikationsspektrum erweitern.},
  language  = {de}
}
@phdthesis{Alzheimer2023,
  author    = {Alzheimer, Mona},
  title     = {Development of tissue-engineered three-dimensional infection models to study pathogenesis of \(Campylobacter\) \(jejuni\)},
  doi       = {10.25972/OPUS-19344},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-193440},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2023},
  abstract  = {Infectious diseases caused by pathogenic microorganisms are one of the largest socioeconomic burdens today. Although infectious diseases have been studied for decades, in numerous cases, the precise mechanisms involved in the multifaceted interaction between pathogen and host continue to be elusive. Thus, it still remains a challenge for researchers worldwide to develop novel strategies to investigate the molecular context of infectious diseases in order to devise preventive or at least anti-infective measures. One of the major drawbacks in trying to obtain in-depth knowledge of how bacterial pathogens elicit disease is the lack of suitable infection models to authentically mimic the disease progression in humans. Numerous studies rely on animal models to emulate the complex temporal interactions between host and pathogen occurring in humans. While they have greatly contributed to shed light on these interactions, they require high maintenance costs, are afflicted with ethical drawbacks, and are not always predictive for the infection outcome in human patients. Alternatively, in-vitro two-dimensional (2D) cell culture systems have served for decades as representatives of human host environments to study infectious diseases. These cell line-based models have been essential in uncovering virulence-determining factors of diverse pathogens as well as host defense mechanisms upon infection. However, they lack the morphological and cellular complexity of intact human tissues, limiting the insights than can be gained from studying host-pathogen interactions in these systems. The focus of this thesis was to establish and innovate intestinal human cell culture models to obtain in-vitro reconstructed three-dimensional (3D) tissue that can faithfully mimic pathogenesis-determining processes of the zoonotic bacterium Campylobacter jejuni (C. jejuni). Generally employed for reconstructive medicine, the field of tissue engineering provides excellent tools to generate organ-specific cell culture models in vitro, realistically recapitulating the distinctive architecture of human tissues. The models employed in this thesis are based on decellularized extracellular matrix (ECM) scaffolds of porcine intestinal origin. Reseeded with intestinal human cells, application of dynamic culture conditions promoted the formation of a highly polarized mucosal epithelium maintained by functional tight and adherens junctions. While most other in-vitro infection systems are limited to a flat monolayer, the tissue models developed in this thesis can display the characteristic 3D villi and crypt structure of human small intestine. First, experimental conditions were established for infection of a previously developed, statically cultivated intestinal tissue model with C. jejuni. This included successful isolation of bacterial colony forming units (CFUs), measurement of epithelial barrier function, as well as immunohistochemical and histological staining techniques. In this way, it became possible to follow the number of viable bacteria during the infection process as well as their translocation over the polarized epithelium of the tissue model. Upon infection with C. jejuni, disruption of tight and adherens junctions could be observed via confocal microscopy and permeability measurements of the epithelial barrier. Moreover, C. jejuni wildtype-specific colonization and barrier disruption became apparent in addition to niche-dependent bacterial localization within the 3D microarchitecture of the tissue model. Pathogenesis-related phenotypes of C. jejuni mutant strains in the 3D host environment deviated from those obtained with conventional in-vitro 2D monolayers but mimicked observations made in vivo. Furthermore, a genome-wide screen of a C. jejuni mutant library revealed significant differences for bacterial factors required or dispensable for interactions with unpolarized host cells or the highly prismatic epithelium provided by the intestinal tissue model. Elucidating the role of several previously uncharacterized factors specifically important for efficient colonization of a 3D human environment, promises to be an intriguing task for future research. At the frontline of the defense against invading pathogens is the protective, viscoelastic mucus layer overlying mucosal surfaces along the human gastrointestinal tract (GIT). The development of a mucus-producing 3D tissue model in this thesis was a vital step towards gaining a deeper understanding of the interdependency between bacterial pathogens and host-site specific mucins. The presence of a mucus layer conferred C. jejuni wildtype-specific protection against epithelial barrier disruption by the pathogen and prevented a high bacterial burden during the course of infection. Moreover, results obtained in this thesis provide evidence in vitro that the characteristic corkscrew morphology of C. jejuni indeed grants a distinct advantage in colonizing mucous surfaces. Overall, the results obtained within this thesis highlight the strength of the tissue models to combine crucial features of native human intestine into accessible in-vitro infection models. Translation of these systems into infection research demonstrated their ability to expose in-vivo like infection outcomes. While displaying complex organotypic architecture and highly prismatic cellular morphology, these tissue models still represent an imperfect reflection of human tissue. Future advancements towards inclusion of human primary and immune cells will strive for even more comprehensive model systems exhibiting intricate multicellular networks of in-vivo tissue. Nevertheless, the work presented in this thesis emphasizes the necessity to investigate host-pathogen interactions in infection models authentically mimicking the natural host environment, as they remain among the most vital parts in understanding and counteracting infectious diseases.},
  subject      = {Campylobacter jejuni},
  language  = {en}
}