@incollection{FrankeScheerSpringetal.1979,
  author    = {Franke, Werner W. and Scheer, Ulrich and Spring, Herbert and Trendelenburg, Michael F. and Zentgraf, Hanswalter},
  title     = {Organization of nucleolar chromatin},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-39410},
  publisher      = {Universit{\"a}t W{\"u}rzburg},
  year      = {1979},
  abstract  = {No abstract available},
  language  = {en}
}
@incollection{ScheerSpringTrendelenburg1979,
  author    = {Scheer, Ulrich and Spring, Herbert and Trendelenburg, Michael F.},
  title     = {Organization of transcriptionally active chromatin in lampbrush chromosome loops},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-39293},
  publisher      = {Universit{\"a}t W{\"u}rzburg},
  year      = {1979},
  abstract  = {No abstract available},
  language  = {en}
}
@article{ZentgrafTrendelenburgSpringetal.1979,
  author    = {Zentgraf, Hanswalter and Trendelenburg, Michael F. and Spring, Herbert and Scheer, Ulrich and Franke, Werner W. and M{\"u}ller, Ulrike and Drury, Kenneth C. and Rungger, Duri},
  title     = {Mitochondrial DNA arranged into chromatin-like structures after injection into amphibian oocyte nuclei},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-33174},
  year      = {1979},
  abstract  = {Purified mitochondrial DNA (mitDNA) from ovaries ofXenopus lae vis was injected into the nuclei (germinal vesicles) of large viteUogenic oocytes of the same organism and examined by electron microscopy ofthe spread nuclear contents. Normally located nuclei of untreated oocytes as weil as peripherally translocated nuclei of centrifuged oocytes were used. In addition, oocyte nuclei isolated and incubated under liquid paraffin oil were injected with DNA. The integrity oftranscriptional structures of endogenous chromosomal (Iampbrush chromosomes) and extrachromosomal (nucleoli) genes of the injected nuclei was demonstrated. Microinjected mitDN A was identified as circles of chromatin exhibiting polynucleosome-like organization and a me an contour length of 2.6 J.Lm, corresponding to a compaction ratio of the mitDN A of about 2 : I. This DNA packing ratio is similar to that observed after preparation of various kinds of native chromatin in low salt buffers. The chromatin circles formed from injected mitDNA only very rarely exhibited lateral fibrils suggestive of transcriptional activity. These results suggest that purified mitDNA can be transformed to normally structured chromatin when exposed to oocyte nuclear contents but is rarely , if at all , transcribed in this form and in this environment.},
  language  = {en}
}
@article{ScheerSommervilleBustin1979,
  author    = {Scheer, Ulrich and Sommerville, John and Bustin, M.},
  title     = {Injected histone antibodies interfere with transcription of lampbrush chromosome loops in oocytes of Pleurodeles},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-33166},
  year      = {1979},
  abstract  = {Antibodies to calf thymus histone H2B were purified by chromatography on DEAE-cellulose and injected into oocyte nuclei of Pleurodeles waltlii. As shown by indirect immunofluorescence these antibodies cross-reacted strongly with corresponding histones associated with lampbrush chromosomes. Shortly after injection the lateral loops of the chromosomes retracted into the chromomeres and by 3 h postinjection the 'lampbrush' appearance was completely lost and the chromosomes appeared in light-microscopic preparations as rod-like structures consisting of 10ngitudina11y coalesced chromomeres. In control oocytes injected with non-immune immunoglobulins or antibodies against a ubiquitous transcript-associated protein no morphological alterations of the lampbrush chromosomes could be observed. Electron microscopic spreads of chromosomes prepared at various times after injection of anti-H2B revealed a progressive loss of transcriptional complexes from the loop axes. Finally, higher-order chromatin configurations, like supranuc1eosomal globules (' superbeads ') or cable-like chromatin strands 50- 60 nm thick predominated, indicating complete transcriptional inactivation of a11 chromosomal regions. The results indicate that H2B antibodies react specifically with his tones associated with the transcribed DNA of lateral loops in their native state. The resulting antigenantibody complexes seem to inhibit progression of the R A polymerases along the template, thus causing the premature release of transcripts, a process analogous to the stripping effect of actinomycin D. The demonstration of histones associated with heavily transcribed regions, which are not compacted into nucleosomes but largely extended, supports the current concept that unfolding of nucleosomes to a110w transcription of the DNA does not involve dissociation of histones. In contrast, amplified ribosomal RNA genes are unaffected by injected HzB antibodies. This does not necessarily indicate absence of his tones from nucleolar chromatin, since we do not know whether it is accessible in vivo to antibodies or whether the histone antigenie determinants are masked by the presence of other proteins. The technique of injecting specific antibodies should be widely applicable when analysing the in vivo distribution of chromosomal components at the electron-microscopic level and when studying complex metabolie processes, like the cleavage and modification of RNA, by selective inhibition of defined enzymic steps.},
  language  = {en}
}
@article{ScheerSommervilleMueller1980,
  author    = {Scheer, Ulrich and Sommerville, John and M{\"u}ller, Ulrike},
  title     = {DNA is assembled into globular supranucleosomal chromatin structures by nuclear contents of amphibian oocytes},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-39671},
  year      = {1980},
  abstract  = {The assembly of DNA into nucleosomal and supranucleosomal chromatin structures has been studied (i) by injection of circular DNA molecules (plasmids) into nuclei of Pleurodeles waltlii oocytes; and (ii) by in vitro incubation of plasmid molecules with the supernatant fraction from oocyte nuclei of Pleurodeles and Xenopus laevis, followed by purification of nucleoprotein structures formed with sucrose gradient centrifugation. [n both types of experiments , spread preparations of the newly assembled and transcriptionally inactive chromatin , examined by electron microscopy , show dense globular higher order (supranucleosomal) packing forms. Under partially relaxing (low salt) preparation conditions granular chromatin subunits of about 30 nm diameter can be seen either as widely spaced particles or in closely packed aggregates. The transcriptionally inactive endogenous chromatin of chromomeres of lampbrush chromosomes is arranged in similar higher order chromatin units. A correlation is found between the sizes of the DN A molecule probes used and the numbers of nucleosomes and higher order globules in the assembled chromatin structures. After prolonged dispersion in low salt buffers , these globular chromatin units unfold into chains of7-12 nucleosomes. The results support the concept that chromatin is arranged , under physiological ion concentrations as they are present in the nucleus , in supranucleosomal units of globular morphology.},
  language  = {en}
}
@incollection{FrankeScheerZentgrafetal.1980,
  author    = {Franke, Werner W. and Scheer, Ulrich and Zentgraf, Hanswalter and Trendelenburg, Michael F. and M{\"u}ller, U. and Krohne, G. and Spring, H.},
  title     = {Organization of transcribed and nontranscribed chromatin},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-40656},
  publisher      = {Universit{\"a}t W{\"u}rzburg},
  year      = {1980},
  abstract  = {No abstract available},
  subject      = {Tumor / Zellteilung},
  language  = {en}
}
@article{Scheer1980,
  author    = {Scheer, Ulrich},
  title     = {Structural organization of spacer chromatin between transcribed ribosomal RNA genes in amphibian oocytes},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-41057},
  year      = {1980},
  abstract  = {Transcribed nucleolar chomatin, including the spacer regions interspersed between the rRNA genes, is different from the bulk of nontranscribed chromatin in that the DNA of these regions appears to be in an extended (B) conformation when examined by electron microscopy. The possibility that this may reflect artificial unfolding of nucleosomes during incubation in very low salt buffers as routinely used in such spread preparations has been examined by studying the influence of various ion concentrations on nucleolar chromatin structure. Amplified nucleolar chromatin of amphibian oocytes (Xenopus laevis, Pleurodeles waltlii, Triturus cristatus) was spread in various concentrations of NaCl (range 0 to 20 mM). Below 1 mM salt spacer chromatin frequently revealed a variable number of irregularly shaped beads, whereas above this concentration the chromatin axis appeared uniformly smooth. At all salt concentrations studied, however, the length distribution of spacer and gene regions was identical. Preparations fixed with glutaraldehyde instead of formaldehyde, or unftxed preparations, were indistinguishable in this respect. The observations indicate that (i) rDNA spacer regions are not compacted into nucleosomal particles and into supranucleosomal structures when visualized at chromatin stabilizing salt concentrations (e.g., 20 mM NaCl), and (ii) spacer DNA is covered by a uniform layer of proteins of unknown nature which, at very low salt concentrations (below 1 mM NaCl), can artificially give rise to the appearance of small granular particles of approximately nucleosome-like sizes. These particles, however, are different from nucleosomes in that they do not foreshorten the associated spacer DNA. The data support the concept of an altered nucleohistone conformation not only in transcribed chromatin but also in the vicinity of transcriptional events.},
  subject      = {Cytologie},
  language  = {en}
}
@article{ScheerZentgrafSauer1981,
  author    = {Scheer, Ulrich and Zentgraf, Hanswalter and Sauer, Helmut W.},
  title     = {Different chromatin structures in Physarum polycephalum: a special form of transcriptionally active chromatin devoid of nucleosomal particles},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-33148},
  year      = {1981},
  abstract  = {Nonnucleolar chromatin from interphase nuclei of Physarum polycephalum plasmodia occurs in two different structural configurations as seen in electron microscopic spread preparations. While the majority of the chromatin is devoid of nascent ribonucleoprotein (RNP) fibrils and compacted into nucleosomal particles, a minor proportion (10- 20\%) is organized differently and reveals a smooth contour. It is this form of smooth chromatin which is rich in transcription units (mean length: 1.36±0.21 11m). Only occasionally are solitary nascent RNP fibrils observed which are associated with beaded strands of chromatin. In transcribed smooth chromatin nucleosomal particles are not only absent from the transcription units but also from their nontranscribed flan king regions, indicating that this special structural aspect is not merely a direct consequence of the transcriptional process. The existence of ca. 10- 20\% of Physarum chromatin in the smoothly contoured form is discussed in relation to reports of a preferential digestibility of a similar proportion of Physarum chromatin by DNAse I (Jalouzot et al. , 1980) and to the altered configuration of "peak A" chromatin subunits after micrococcal nuclease digestion (Johnson et al., 1978a, b).},
  language  = {en}
}
@article{ScheerSommerville1981,
  author    = {Scheer, Ulrich and Sommerville, J.},
  title     = {Structural organization of nascent transcripts and hnRNA molecules in amphibian oocytes},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-39765},
  year      = {1981},
  abstract  = {Comparisons ofrelative lengths oflampbrush loops, nascent RNP transcripts and hnRNA molecules from oocytes of amphibia with different C-values show that there is an increasing trend in loop, and transcriptional unit, length with increase in genome size but no increasing trend with respect to RN A contour length.The formation of duplex regions and circles in RNP fibrils indicates that RNA processing may occur within the nascent fibrils. The hnRNA molecules from oocytes of the various amphibia readily form intermolecular duplex structures. These complementary sequences have a low kinetic complexity and are transcribed from highly repetitive sequences distributed throughout the genome. Their possible function is considered.},
  language  = {en}
}
@article{ZentgrafMuellerScheeretal.1981,
  author    = {Zentgraf, H. and M{\"u}ller, U. and Scheer, Ulrich and Franke, W. W.},
  title     = {Evidence for the existence of globular units in the supranucleosomal organization of chromatin},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-34123},
  year      = {1981},
  abstract  = {No abstract available},
  language  = {en}
}
@article{BonaScheerBautz1981,
  author    = {Bona, Marion and Scheer, Ulrich and Bautz, Ekkehard K. F.},
  title     = {Antibodies to RNA polymerase II (B) inhibit transcription in lampbrush chromosomes after microinjection into living amphibian oocytes},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-33128},
  year      = {1981},
  abstract  = {Antibodies directed against RNA polymerase II (B) from Drosophila melanogaster were obtained from rabbit sera and, as monoclonal immunoglobulins, from mouse hybridomas and shown to cross-react with the amphibian enzyme protein. Localization by indirect immunofluorescence microscopy revealed the association of this enzyme with chromatin of interphase nuclei of amphibian cells and its absence in nucleoli. Purified immunoglobulins were microinjected in to nuclei ofliving vitellogenic oocytes of Ple1lrodeles waltlii and X enopus laevis and their effects on transcriptional processes were monitored by biochemical and light and electron microscopic stud ies. RNA polymerase II antibodies from rabbit sera caused a rapid and almost complete release of nascent transcripts from the chromatin axis of the loops of lampbrush chromosomes, followed by collapse of the loops and their retraction on the main chromosome axis. Monoclonal murine antibodies to the Iarge RNA polymerase II subunits also inhibited transcription in chromosome Ioops but appeared to inhibit initiation rather than elongation events. Activities of class land III RNA polymerases were not significantly affected by injection of antibodies to polymerase II, indicating immunological differences between the three RNA polymerases. The potential value of the in vitro test system described , as a very sensitive assay for detecting proteins involved in transcription in living cells, is discussed. 1},
  language  = {en}
}
@article{FrankeScheerKrohneetal.1981,
  author    = {Franke, Werner W. and Scheer, Ulrich and Krohne, Georg and Jarasch, Ernst-Dieter},
  title     = {The nuclear envelope and the architecture of the nuclear periphery},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-33108},
  year      = {1981},
  abstract  = {No abstract available},
  language  = {en}
}
@article{FrankeKleinschmidtSpringetal.1981,
  author    = {Franke, Werner W. and Kleinschmidt, J{\"u}rgen A. and Spring, Herbert and Krohne, Georg and Grund, Christine and Trendelenburg, Michael F. and St{\"o}hr, Michael and Scheer, Ulrich},
  title     = {A nucleolar skeleton of protein filaments demonstrated in amplified nucleoli of Xenopus laevis},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-33130},
  year      = {1981},
  abstract  = {The amplified, extrachromosomal nucleoli of Xenopus oocytes contain a meshwork of -4-nm-thick filaments, which are densely coiled into higher-order fibrils of diameter 30-40 nm and are resistant to treatment with high- and low-salt concentrations, nucleases (DNase I, pancreatic RNase, micrococcal nuclease), sulfhydryl agents, and various nonionic detergents. This filamentous "skeleton" has been prepared from manually isolated nuclear contents and nucleoli as weil as from nucleoli isolated by fluorescence-activated particle sorting. The nucleolar skeletons are observed in light and electron microscopy and are characterized by ravels of filaments that are especially densely packed in the nucleolar cortex. DNA as weil as RNA are not constituents of this structure, and precursors to ribosomal RNAs are completely removed from the extraction-resistant filaments by treatment with high-salt buffer or RN ase. Fractions of isolated nucleolar skeletons show specific enrichment of an acidic major protein of 145,000 mol wt and an apparent pi value of -6.15, accompanied in some preparations by various amounts of minor proteins. The demonstration of this skeletal structure in "free" extrachromosomal nucleoli excludes the problem of contaminations by nonnucleolar material such as perinucleolar heterochromatin normally encountered in studies of nucleoli from somatic cells. It is suggested that this insoluble protein filament complex forms a skeleton specific to the nucleolus proper that is different from other extraction-resistant components of the nucleus such as matrix and lamina and is involved in the spatial organization of the nucleolar chromatin and its transcriptional products. In studies of the organization of the interphase nucleus, considerable progress has been made in the elucidation of the arrangement of chromatin components and transcriptional products. However, relatively little is known about the composition and function of another category of nuclear structures, the nonnucleoproteinaceous architectural components that are insoluble in solutions of low and high ionic strength, despite numerous studies dedicated to this problem. Such structures include (a) the nuclear envelope and its pore complexes (I, 15, 18, 23, 37, 41), (b) a peripheral layer of insoluble protein ("lamina"; I, 15, 22, 23, 59), (e) certain skeletal proteins related to the chromosome "scaffold" described by Laemmli and coworkers (see references 2 and 3), and (d) ill-defined tangles of fibrillar structures of the nuclear interior that are collectively described as residual "matrix" (6, 21 ; for reviews, see references THE JOURNAL OF CEll BrOlOGY . VOlUME 90 AUGUST 1981 289-299 © The RockefeIler University Press · 0021 -9525/ 81 / 08/ 0289/ 11 \$1 .00 4 and 12). The latter, preparatively},
  language  = {en}
}
@article{Scheer1981,
  author    = {Scheer, Ulrich},
  title     = {Identification of a novel class of tandemly repeated genes transcribed on lampbrush chromosomes of Pleurodeles waltlii},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-33153},
  year      = {1981},
  abstract  = {Electron microscope preparations of lampbrush chromosomes from oocytes of Pleurodeles waltl;; have revealed a new class of tandemly repeated genes. These genes are highly active, as judged by the close spacing of nascent transcripts. They occur in clusters of >100 copies and are transcribed in units containing roughly 940 base pairs of DNA that are separated by nontranscribed spacers of an estimated DNA content of 2,410 base pairs. The size and the pattern of arrangement of these transcription units can not be correlated with any of the repetitious genes so far described.},
  language  = {en}
}
@incollection{ScheerZentgraf1982,
  author    = {Scheer, Ulrich and Zentgraf, Hanswalter},
  title     = {Morphology of nucleolar chromatin in electron microscopic spread preparations},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-41155},
  publisher      = {Universit{\"a}t W{\"u}rzburg},
  year      = {1982},
  abstract  = {No abstract available},
  language  = {en}
}
@article{Scheer1982,
  author    = {Scheer, Ulrich},
  title     = {A novel type of chromatin organization in lampbrush chromosomes of Pleurodeles waltlii: visualization of clusters of tandemly repeated, very short transcriptional units},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-41087},
  year      = {1982},
  abstract  = {A novel chromatin configuration is described in lampbrush chromosomes of Pleurodeles waltlii oocytes which is different from transcriptionally inactive chromatin as weil as from the various forms of transcribed chromatin hitherto described. This novel type of chromatin is not arranged in Christmas tree-Iike configurations of densely packed lateral ribonucleoprotein (RNP) fibriIs but is characterized by a periodic alternating pattern of thick and thin regions which occur in clusters 01 some 10,000 repeats. Each thickened unit with an average length of 45 nm contains two c10sely spaced particles, the putative RNA polymerases, and each thickened unit is separated from the next one by a beaded chromatin spacer with a length of about 80 nm. This chromatin spacer contains on average two particles of approximately 14 nm in diameter, assumed to be nucleosomes. The thickened regions are interpreted to represent short transcriptional units containing approximately 130 base pairs of DNA which are separated from each other by nontranscribed spacers of 240-400 base pairs of DNA. The possibility is discussed that these transcriptional units represent 5S rRNA or tRNA genes.},
  language  = {en}
}
@article{SommervilleScheer1982,
  author    = {Sommerville, John and Scheer, Ulrich},
  title     = {Transcription of complementary repeat sequences in amphibian oocytes},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-33915},
  year      = {1982},
  abstract  = {Repeat sequences are transcribed in the germinal vesicles of amphibian oocytes. In the hnRNA population both complements of the repeats are found and can be readily detected because they form intermolecular duplex structures. The structure and formation of duplex regions have been studied in the hnRNA of Xenopus laevis, Triturus cristatus, Amphiuma means and Necturus maculosus, a series of amphibians of increasing genome size (C-value). In T. cristatus, the duplex structures are mostly 600- 1200 bp in length, whereas in X. laevis they are shorter and in N. maculosus they tend to be longer. Although the proportion of RNA sequence capable of rapidly forming duplex structures is different in different organisms, this property bears no relationship to C-value. However the sequence complexity of complementary repeats, as estimated from the rate of duplex formation, does show an increasing trend with C-value. The complementary repeats found in oocyte hnRNA are transcribed from families of DNA sequence that are each represented in the genome by thousands of copies. The extent of cross-species hybridization is low, indicating that the repeat sequences transcribed in different amphibian genera are not the same. In situ hybridization experiments indicate that the repeat sequences are spread throughout the genome. The evolution and possible function of complementary repeats are considered.},
  language  = {en}
}
@article{Scheer1982,
  author    = {Scheer, Ulrich},
  title     = {Biologische Objekte im Transmissions-Elektronenmikroskop (Teil 4): Spreitungstechniken},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-39652},
  year      = {1982},
  abstract  = {Visualizing nucleic acids (DNA, RNA), nucleoprotein complexes and chromatin requires the use of special electron microscopicspreading techniques. In part 4 (27 refs.), methods are outlined for spreading DNA and RNA molecules for electron microscopic observation, these methods using modifications of the basic protein film method developed by A. Kleinschmidt and R. K. Zahn (1959). Hybridization techniques that allow the observation of heteroduplexes formed between two DNA molecules or between DNA and RNA molecules are reviewed, with special emphasis being placed on the DNA-RNA hybrids as a tool for elucidating RNA splicing. Techniques for studying DNA-protein interactions without the use of a protein monolayer film are mentioned. Finally, the "Miller spreading technique" for visualizing the nucleosomal organization of eukaryotic chromatin as well as the transcription of genes is discribed and illustrated.},
  language  = {de}
}
@inproceedings{Scheer1982,
  author    = {Scheer, Ulrich},
  title     = {Electron microscopic analysis of chromatin and gene expression},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-39456},
  year      = {1982},
  abstract  = {No abstract available},
  language  = {en}
}
@article{ScheerSommerville1982,
  author    = {Scheer, Ulrich and Sommerville, John},
  title     = {Sizes of chromosome loops and hnRNA molecules in oocytes of amphibia of different genome sizes},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-33094},
  year      = {1982},
  abstract  = {The lengths of lampbrush chromosome loops and their tran scription units show a positive correlation with genome size in oocytes of amphibia with different C values. However, there is no such correlation with contour lengths of hnRNA molecu les isolated from these oocytes. These results indi cate th at more ON A sequences are transcribed in amphibia of higher C value , but that processing of RNA transc ripts occurs while they are still attached to the chromosomes as nascent ribonucleoprotein fibrils.},
  language  = {en}
}