@article{VogelLoeschbergerSaueretal.2011,
  author    = {Vogel, Benjamin and L{\"o}schberger, Anna and Sauer, Markus and Hock, Robert},
  title     = {Cross-linking of DNA through HMGA1 suggests a DNA scaffold},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-68865},
  year      = {2011},
  abstract  = {Binding of proteins to DNA is usually considered 1D with one protein bound to one DNA molecule. In principle, proteins with multiple DNA binding domains could also bind to and thereby cross-link different DNA molecules. We have investigated this possibility using high-mobility group A1 (HMGA1) proteins, which are architectural elements of chromatin and are involved in the regulation of multiple DNA-dependent processes. Using direct stochastic optical reconstruction microscopy (dSTORM), we could show that overexpression of HMGA1a-eGFP in Cos-7 cells leads to chromatin aggregation. To investigate if HMGA1a is directly responsible for this chromatin compaction we developed a DNA cross-linking assay. We were able to show for the first time that HMGA1a can cross-link DNA directly. Detailed analysis using point mutated proteins revealed a novel DNA cross-linking domain. Electron microscopy indicates that HMGA1 proteins are able to create DNA loops and supercoils in linearized DNA confirming the cross-linking ability of HMGA1a. This capacity has profound implications for the spatial organization of DNA in the cell nucleus and suggests cross-linking activities for additional nuclear proteins.},
  subject      = {DNA},
  language  = {en}
}
@phdthesis{Veryha2011,
  author    = {Veryha, Katarzyna},
  title     = {Qualitative and quantitative SEM margin analysis of Ormocer restorations in molars and premolars - 4 year long observation},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-64858},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2011},
  abstract  = {The most important aim of restorative therapy in dentistry is to achieve a restoration that remains dense from bacteria and this way from tooth pulp irritation as well. Patients on the other hand appreciate and expect additionally good aesthetics. This way the decision which material the practitioner should chose very often still causes dilemmas. The aim of this 4 year long study was to evaluate the Admira filling material, that belongs to ormocer group and its future in the area of restorative dentistry. SEM analysis of fillings margins followed on epoxy resin casts (achieved from impressions taken at each of the control appointments) and showed that after four years of clinical observation more than 90 percent of the restoratives margins remained perfectly adapted. Due to technical reasons the examination followed only in the enamel area and as a result this study is not answering the question of margin quality within the dentin.},
  subject      = {Ormocer},
  language  = {en}
}
@article{vanOorschotBeckmannSchulzeetal.2011,
  author    = {van Oorschot, Birgitt and Beckmann, Gabriele and Schulze, Wolfgang and Rades, Dirk and Feyer, Petra},
  title     = {Radiotherapeutic options for symptom control in breast cancer},
  series = {Breast Care},
  volume    = {6},
  journal   = {Breast Care},
  number    = {1},
  issn      = {1661-3791},
  doi       = {10.1159/000324564},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-199105},
  pages     = {14-19},
  year      = {2011},
  abstract  = {The majority of breast cancer patients will require radiation therapy at some time during the course of their disease. An estimated 30-50\% of all radiation treatments are of palliative nature, either to alleviate symptoms or prophylactic to prevent deterioration of quality of life due to locally progressive disease. Radiotherapy is a locally effective tool, and typically causes no systemic and mostly mild acute side effects. The following article provides an overview of options and decision-making in palliative radiotherapy for symptom control.},
  language  = {en}
}
@article{VandenHoveJakobSchrautetal.2011,
  author    = {Van den Hove, Daniel and Jakob, Sissi Brigitte and Schraut, Karla-Gerlinde and Kenis, Gunter and Schmitt, Angelika Gertrud and Kneitz, Susanne and Scholz, Claus-J{\"u}rgen and Wiescholleck, Valentina and Ortega, Gabriela and Prickaerts, Jos and Steinbusch, Harry and Lesch, Klaus-Peter},
  title     = {Differential Effects of Prenatal Stress in 5-Htt Deficient Mice: Towards Molecular Mechanisms of Gene x Environment Interactions},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-75795},
  year      = {2011},
  abstract  = {Prenatal stress (PS) has been shown to influence the development of the fetal brain and to increase the risk for the development of psychiatric disorders in later life. Furthermore, the variation of human serotonin transporter (5-HTT, SLC6A4) gene was suggested to exert a modulating effect on the association between early life stress and the risk for depression. In the present study, we used a 5-Htt6PS paradigm to investigate whether the effects of PS are dependent on the 5-Htt genotype. For this purpose, the effects of PS on cognition, anxiety- and depression-related behavior were examined using a maternal restraint stress paradigm of PS in C57BL6 wild-type (WT) and heterozygous 5-Htt deficient (5-Htt +/2) mice. Additionally, in female offspring, a genome-wide hippocampal gene expression profiling was performed using the Affymetrix GeneChipH Mouse Genome 430 2.0 Array. 5-Htt +/2 offspring showed enhanced memory performance and signs of reduced anxiety as compared to WT offspring. In contrast, exposure of 5-Htt +/2 mice to PS was associated with increased depressive-like behavior, an effect that tended to be more pronounced in female offspring. Further, 5-Htt genotype, PS and their interaction differentially affected the expression of numerous genes and related pathways within the female hippocampus. Specifically, MAPK and neurotrophin signaling were regulated by both the 5-Htt +/2 genotype and PS exposure, whereas cytokine and Wnt signaling were affected in a 5-Htt genotype6PS manner, indicating a gene6environment interaction at the molecular level. In conclusion, our data suggest that although the 5-Htt +/2 genotype shows clear adaptive capacity, 5-Htt +/2 mice -particularly females- at the same time appear to be more vulnerable to developmental stress exposure when compared to WT offspring. Moreover, hippocampal gene expression profiles suggest that distinct molecular mechanisms mediate the behavioral effects of the 5-Htt genotype, PS exposure, and their interaction.},
  subject      = {Medizin},
  language  = {en}
}
@article{VandenHoveJakobSchrautetal.2011,
  author    = {Van den Hove, Daniel and Jakob, Sissi Brigitte and Schraut, Karla-Gerlinde and Kenis, Gunter and Schmitt, Angelika Gertrud and Kneitz, Susanne and Scholz, Claus-J{\"u}rgen and Wiescholleck, Valentina and Ortega, Gabriela and Prickaerts, Jos and Steinbusch, Harry and Lesch, Klaus-Peter},
  title     = {Differential Effects of Prenatal Stress in 5-Htt Deficient Mice: Towards Molecular Mechanisms of Gene x Environment Interactions},
  series = {PLoS ONE},
  volume    = {6},
  journal   = {PLoS ONE},
  number    = {8},
  doi       = {10.1371/journal.pone.0022715},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-135111},
  pages     = {e22715},
  year      = {2011},
  abstract  = {Prenatal stress (PS) has been shown to influence the development of the fetal brain and to increase the risk for the development of psychiatric disorders in later life. Furthermore, the variation of human serotonin transporter (5-HTT, SLC6A4) gene was suggested to exert a modulating effect on the association between early life stress and the risk for depression. In the present study, we used a 5-HttxPS paradigm to investigate whether the effects of PS are dependent on the 5-Htt genotype. For this purpose, the effects of PS on cognition, anxiety-and depression-related behavior were examined using a maternal restraint stress paradigm of PS in C57BL6 wild-type (WT) and heterozygous 5-Htt deficient (5-Htt +/-) mice. Additionally, in female offspring, a genome-wide hippocampal gene expression profiling was performed using the Affymetrix GeneChip (R) Mouse Genome 430 2.0 Array. 5-Htt +/- offspring showed enhanced memory performance and signs of reduced anxiety as compared to WT offspring. In contrast, exposure of 5-Htt +/- mice to PS was associated with increased depressive-like behavior, an effect that tended to be more pronounced in female offspring. Further, 5-Htt genotype, PS and their interaction differentially affected the expression of numerous genes and related pathways within the female hippocampus. Specifically, MAPK and neurotrophin signaling were regulated by both the 5-Htt +/- genotype and PS exposure, whereas cytokine and Wnt signaling were affected in a 5-Htt genotypexPS manner, indicating a genexenvironment interaction at the molecular level. In conclusion, our data suggest that although the 5-Htt +/- genotype shows clear adaptive capacity, 5-Htt +/- mice -particularly females-at the same time appear to be more vulnerable to developmental stress exposure when compared to WT offspring. Moreover, hippocampal gene expression profiles suggest that distinct molecular mechanisms mediate the behavioral effects of the 5-Htt genotype, PS exposure, and their interaction.},
  language  = {en}
}
@article{UppaluriNaglerStellamannsetal.2011,
  author    = {Uppaluri, Sravanti and Nagler, Jan and Stellamanns, Eric and Heddergott, Niko and Herminghaus, Stephan and Pfohl, Thomas and Engstler, Markus},
  title     = {Impact of Microscopic Motility on the Swimming Behavior of Parasites: Straighter Trypanosomes are More Directional},
  series = {PLoS Computational Biology},
  volume    = {7},
  journal   = {PLoS Computational Biology},
  number    = {6},
  doi       = {10.1371/journal.pcbi.1002058},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-140814},
  pages     = {e1002058},
  year      = {2011},
  abstract  = {Microorganisms, particularly parasites, have developed sophisticated swimming mechanisms to cope with a varied range of environments. African Trypanosomes, causative agents of fatal illness in humans and animals, use an insect vector (the Tsetse fly) to infect mammals, involving many developmental changes in which cell motility is of prime importance. Our studies reveal that differences in cell body shape are correlated with a diverse range of cell behaviors contributing to the directional motion of the cell. Straighter cells swim more directionally while cells that exhibit little net displacement appear to be more bent. Initiation of cell division, beginning with the emergence of a second flagellum at the base, correlates to directional persistence. Cell trajectory and rapid body fluctuation correlation analysis uncovers two characteristic relaxation times: a short relaxation time due to strong body distortions in the range of 20 to 80 ms and a longer time associated with the persistence in average swimming direction in the order of 15 seconds. Different motility modes, possibly resulting from varying body stiffness, could be of consequence for host invasion during distinct infective stages.},
  language  = {en}
}
@phdthesis{Tran2011,
  author    = {Tran, Nam Binh},
  title     = {Climate change assessment in Southeast Asia and implications for agricultural production in Vietnam},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-64570},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2011},
  abstract  = {Seit vielen Jahren ist die Erforschung von Klimawandel und -schwankungen das zentrale Thema der Klimatologie. Besonderes deutlich wird dies anhand der IPCC-Berichte, ebenso wie der zahlreichen Einzelstudien zur Entwicklung des Klimas auf unterschiedlichsten raum-zeitlichen Skalen. Insbesondere seit den 1980er Jahren befassen sich zahlreiche Forschungsgruppen weltweit mit der systematischen Sammlung, Aufbereitung und auch Auswertung von Klimadaten. Diese Datengrundlage erlaubt Analysen zur Entwicklung der globalen Lufttemperatur, des Niederschlags und anderer Klimaelemente (Jones et al., 1986; Hansen und Lebedeff, 1987; Vinnikov et al., 1987, 1990). Das wichtigste {\"u}bergreifende Ergebnis dieser Untersuchungen ist die Feststellung einer globalen Erw{\"a}rmung w{\"a}hrend des 20. Jahrhunderts, die sich in den beiden letzten Jahrzehnten besonders intensivierte. Absch{\"a}tzungen {\"u}ber die Art und St{\"a}rke des Klimawandels auf gr{\"o}ßeren, planungsrelevanten Massst{\"a}ben sind jedoch nach wie vor mit großen Unsicherheiten verbunden. F{\"u}r eine detailliertere Erforschung der Auswirkungen der globalen Erw{\"a}rmung auf regionaler oder gar lokaler Ebene besteht daher noch großer Forschungsbedarf. In dieser Dissertation wird zu diesem Zweck ein statistischer Ansatz verfolgt. Dieser erlaubt die Identifikation systematischer Unterschiede zwischen den Auspr{\"a}gungen klimatologischer Feldgr{\"o}ßen (bodennahe Lufttemperatur und Niederschlag) wie sie von sogenannten General Circulation Models (GCMs) simuliert werden im Vergleich zu den betreffenden Parametern aus Beobachtungsdaten. Als Beobachtungsdaten werden die NCEP Reanalysen, die statistisch interpolierten Datens{\"a}tze der CRU sowie Stationsdaten aus Vietnam verwendet. Hierbei zeigt sich, dass die aktuellen Klimamodelle die r{\"a}umlichen Muster der betrachteten Variablen in befriedigender Weise reproduzieren. Die Analyse des regionalen Klimawandels in S{\"u}dost-Asien erfolgt durch die Auswertung von Klimamodellrechnungen. Diese wurden von verschiedenen GCMs durchgef{\"u}hrt, wobei unterschiedliche Annahmen {\"u}ber die zuk{\"u}nftigen Treibhausgasemissionen ber{\"u}cksichtigt wurden. Der Fokus dieser Dissertation ist die Analyse der projizierten zeitlichen Entwicklung von bodennaher Temperatur und Niederschlag im 21. Jahrhundert. Hierbei werden sowohl j{\"a}hrliche als auch saisonale Mittelwerte bzw. Summen ber{\"u}cksichtigt. Neben diesen rein physikalisch-klimatologischen Betrachtungen behandelt diese Dissertation auch einen angewandten Aspekt, n{\"a}mlich den Impakt des Klimawandels auf die Landwirtschaft, exemplarisch untersucht am Beispiel Vietnams. F{\"u}r die Absch{\"a}tzung der Vulnerabilit{\"a}t dieses essentiellen Wirtschaftsbereiches wird ein statistisches Modell entwickelt in das an klimatischen Parametern die bodennahe temperatur sowie der Niederschlag einfliessen. Diese Untersuchung leistet damit einen wichtigen Beitrag zum Wissenstand {\"u}ber die Auswirkungen des Klimawandels in den niederen Breiten. Die sozio-{\"o}konomische Entwicklung jedes Staates der Erde wird von den Folgen des Klimawandels beeinflusst, allerdings variiert der Grad der Beeintr{\"a}chtigung erheblich. Vermutlich werden Entwicklungsl{\"a}nder wie Vietnam die Auswirkungen des Klimawandels besonders stark zu sp{\"u}ren bekommen. Die Ursachen f{\"u}r diese hohe Vulnerabilit{\"a}t liegen unter anderem in der Wirtschaftsstruktur: der allgemein hohe Stellenwert nat{\"u}rlicher Ressourcen und eine geringe Diversit{\"a}t verringern hier die M{\"o}glichkeiten zur Adaption an die beobachteten und projizierten Ver{\"a}nderungen. Die vorliegende Dissertation gliedert sich wie folgt: In Kapitel 1 stellt eine allgemeine Einf{\"u}hrung zur Thematik dar. Die Begriffe Klima und Klimawandel sowie einige {\"u}bliche Modelle zum Klimawandel, verbunden mit einer Abw{\"a}gung der spezifischen Vor- und Nachteile, werden erl{\"a}utert. Kapitel 2 besch{\"a}ftigt sich mit der Methodik. Hier werden die r{\"a}umliche Interpolation sowie die angewendeten explorativen und inferentiellen statistischen Verfahren diskutiert. Die Kapitel 3 und 4 beschreiben die Datengrundlage und die betrachtete Region. Im Kapitel 5 werden die Untersuchungsergebnisse dargelegt. In Kapitel 6 erfolgt die Abschlussbetrachtung und ein Ausblick auf die Zukunft. Am Ende der Dissertation finden sich die verwendeten Quellen sowie ein Appendix mit landwirtschaftlichen Daten.},
  subject      = {Klima{\"a}nderung},
  language  = {en}
}
@article{TonyBurmesterSchulzeKoopsetal.2011,
  author    = {Tony, Hans-Peter and Burmester, Gerd and Schulze-Koops, Hendrik and Grunke, Mathias and Henes, Joerg and K{\"o}tter, Ina and Haas, Judith and Unger, Leonore and Lovric, Svjetlana and Haubitz, Marion and Fischer-Betz, Rebecca and Chehab, Gamal and Rubbert-Roth, Andrea and Specker, Christof and Weinerth, Jutta and Holle, Julia and M{\"u}ller-Ladner, Ulf and K{\"o}nig, Ramona and Fiehn, Christoph and Burgwinkel, Philip and Budde, Klemens and S{\"o}rensen, Helmut and Meurer, Michael and Aringer, Martin and Kieseier, Bernd and Erfurt-Berge, Cornelia and Sticherling, Michael and Veelken, Roland and Ziemann, Ulf and Strutz, Frank and von Wussow, Praxis and Meier, Florian MP and Hunzelmann, Nico and Schmidt, Enno and Bergner, Raoul and Schwarting, Andreas and Eming, R{\"u}diger and Schwarz-Eywill, Michael and Wassenberg, Siegfried and Fleck, Martin and Metzler, Claudia and Zettl, Uwe and Westphal, Jens and Heitmann, Stefan and Herzog, Anna L. and Wiendl, Heinz and Jakob, Waltraud and Schmidt, Elvira and Freivogel, Klaus and D{\"o}rner, Thomas and Hertl, Michael and Stadler, Rudolf},
  title     = {Safety and clinical outcomes of rituximab therapy in patients with different autoimmune diseases: experience from a national registry (GRAID)},
  series = {Arthritis Research \& Therapy},
  volume    = {13},
  journal   = {Arthritis Research \& Therapy},
  number    = {R75},
  doi       = {10.1186/ar3337},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-142856},
  pages     = {1-14},
  year      = {2011},
  abstract  = {Introduction: Evidence from a number of open-label, uncontrolled studies has suggested that rituximab may benefit patients with autoimmune diseases who are refractory to standard-of-care. The objective of this study was to evaluate the safety and clinical outcomes of rituximab in several standard-of-care-refractory autoimmune diseases (within rheumatology, nephrology, dermatology and neurology) other than rheumatoid arthritis or non-Hodgkin's lymphoma in a real-life clinical setting. Methods: Patients who received rituximab having shown an inadequate response to standard-of-care had their safety and clinical outcomes data retrospectively analysed as part of the German Registry of Autoimmune Diseases. The main outcome measures were safety and clinical response, as judged at the discretion of the investigators. Results: A total of 370 patients (299 patient-years) with various autoimmune diseases (23.0\% with systemic lupus erythematosus, 15.7\% antineutrophil cytoplasmic antibody-associated granulomatous vasculitides, 15.1\% multiple sclerosis and 10.0\% pemphigus) from 42 centres received a mean dose of 2,440 mg of rituximab over a median (range) of 194 (180 to 1,407) days. The overall rate of serious infections was 5.3 per 100 patient-years during rituximab therapy. Opportunistic infections were infrequent across the whole study population, and mostly occurred in patients with systemic lupus erythematosus. There were 11 deaths (3.0\% of patients) after rituximab treatment (mean 11.6 months after first infusion, range 0.8 to 31.3 months), with most of the deaths caused by infections. Overall (n = 293), 13.3\% of patients showed no response, 45.1\% showed a partial response and 41.6\% showed a complete response. Responses were also reflected by reduced use of glucocorticoids and various immunosuppressives during rituximab therapy and follow-up compared with before rituximab. Rituximab generally had a positive effect on patient well-being (physician's visual analogue scale; mean improvement from baseline of 12.1 mm)},
  language  = {en}
}
@phdthesis{Tichy2011,
  author    = {Tichy, Michael},
  title     = {On algebraic aggregation methods in additive preconditioning},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-56541},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2011},
  abstract  = {In the following dissertation we consider three preconditioners of algebraic multigrid type, though they are defined for arbitrary prolongation and restriction operators, we consider them in more detail for the aggregation method. The strengthened Cauchy-Schwarz inequality and the resulting angle between the spaces will be our main interests. In this context we will introduce some modifications. For the problem of the one-dimensional convection we obtain perfect theoretical results. Although this is not the case for more complex problems, the numerical results we present will show that the modifications are also useful in these situation. Additionally, we will consider a symmetric problem in the energy norm and present a simple rule for algebraic aggregation.},
  subject      = {Pr{\"a}konditionierung},
  language  = {en}
}
@phdthesis{Tichy2011,
  author    = {Tichy, Diana},
  title     = {On the Fragility Index},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-73610},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2011},
  abstract  = {The Fragility Index captures the amount of risk in a stochastic system of arbitrary dimension. Its main mathematical tool is the asymptotic distribution of exceedance counts within the system which can be derived by use of multivariate extreme value theory. Thereby the basic assumption is that data comes from a distribution which lies in the domain of attraction of a multivariate extreme value distribution. The Fragility Index itself and its extension can serve as a quantitative measure for tail dependence in arbitrary dimensions. It is linked to the well known extremal index for stochastic processes as well the extremal coefficient of an extreme value distribution.},
  subject      = {Extremwertstatistik},
  language  = {en}
}
@phdthesis{Tian2011,
  author    = {Tian, Rui},
  title     = {Structural and functional organization of synaptic proteins in Drosophila melanogaster},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-57399},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2011},
  abstract  = {Structural and functional modifications of synaptic connections ("synaptic plasticity") are believed to mediate learning and memory processes. Thus, molecular mechanisms of how synapses assemble in both structural and functional terms are relevant for our understanding of neuronal development as well as the processes of learning and memory. Synapses form by an asymmetric association of highly specialized membrane domains: at the presynaptic active zone transmitter filled vesicles fuse, while transmitter receptors at the opposite postsynaptic density sense this signal. By genetic analysis, matrix proteins of active zones from various families have been shown to be important for fast vesicle fusion, and were suggested to contribute to synapse stability and assembly. The Sigrist lab in collaboration with the Buchner lab previously had shown that the large scaffold protein Bruchpilot (Brp) is essential for both the structural and functional integrity of active zones and for synaptic plasticity in Drosophila melanogaster. The work described in this thesis investigated several candidate proteins which appear to be involved in preand postsynaptic function, as summarized in the following: (1) DREP-2 (DEF45 related protein-2) had been found by co-immunoprecipitations with anti-Brp antibodies by Dr. Manuela Schmidt (unpublished data). Mutants and antibodies for the further study of DREP- 2 were generated in this thesis. Yeast two hybrid results suggest that DREP-2 might interact with dynein light chain 2, while in vivo imaging indicates that DREP-2 might be involved in bidirectional axonal transport. (2) Coimmunoprecipitation and pull down experiments suggested that the ARFGAP [ADP-ribosylation factor (ARF)-directed GTPase activating protein (GAP)] protein GIT (G-protein coupled receptor kinase interacting protein) could interact with the endocytosis associated molecule Stoned B (StnB). Mutants in the dgit gene showed an accumulation of large size vesicles, membrane intermediates and decreased vesicle density at the 3rd instar larval neuromuscular junction (NMJ) by electron microscopy (EM). The phenotypes accumulation of large size vesicles and membrane intermediates could be rescued partially by expression of Drosophila GIT (DGIT) or human GIT in dgit mutant background. Furthermore, by immunofluorescence the dgit mutant shows specifically decreased levels of StnB, which could be restored partially by the expression of DGIT. These results strongly support the suggestion that DGIT interacts with StnB, which is involved in the regulation of vesicle size, endocytosis or recycling of synaptic vesicles (SVs). Furthermore, the dgit mutants also showed signs of a mislocalization of the presynaptic protein Brp relative to the postsynaptic protein GluRIID, which could be rescued by expression of DGIT or human GIT in the dgit mutant background, but not by StnB. These results suggest that GIT on one hand executes roles in the regulation of synaptic vesicle endocytosis, but potentially also has structural roles for synapse assembly (3) Djm-1 is a candidate locus to mediate mental retardation in human patients when it is mutated. As a first step towards an understanding of the mechanistic role of DJM-1, Drosophila genetics were used to address DJM-1 function. So far, however, the djm-1 mutant generated in this thesis did not show a nervous system phenotype.},
  subject      = {Taufliege},
  language  = {en}
}
@article{ThormannRaupachWagneretal.2011,
  author    = {Thormann, Birthe and Raupach, Michael J. and Wagner, Thomas and W{\"a}gele, Johann W. and Peters, Marcell K.},
  title     = {Testing a Short Nuclear Marker for Inferring Staphylinid Beetle Diversity in an African Tropical Rain Forest},
  series = {PLoS ONE},
  volume    = {6},
  journal   = {PLoS ONE},
  number    = {3},
  doi       = {10.1371/journal.pone.0018101},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-142666},
  pages     = {e18101},
  year      = {2011},
  abstract  = {Background: The use of DNA based methods for assessing biodiversity has become increasingly common during the last years. Especially in speciose biomes as tropical rain forests and/or in hyperdiverse or understudied taxa they may efficiently complement morphological approaches. The most successful molecular approach in this field is DNA barcoding based on cytochrome c oxidase I (COI) marker, but other markers are used as well. Whereas most studies aim at identifying or describing species, there are only few attempts to use DNA markers for inventorying all animal species found in environmental samples to describe variations of biodiversity patterns. Methodology/Principal Findings: In this study, an analysis of the nuclear D3 region of the 28S rRNA gene to delimit species-like units is compared to results based on distinction of morphospecies. Data derived from both approaches are used to assess diversity and composition of staphylinid beetle communities of a Guineo-Congolian rain forest in Kenya. Beetles were collected with a standardized sampling design across six transects in primary and secondary forests using pitfall traps. Sequences could be obtained of 99\% of all individuals. In total, 76 molecular operational taxonomic units (MOTUs) were found in contrast to 70 discernible morphospecies. Despite this difference both approaches revealed highly similar biodiversity patterns, with species richness being equal in primary and secondary forests, but with divergent species communities in different habitats. The D3-MOTU approach proved to be an efficient tool for biodiversity analyses. Conclusions/Significance: Our data illustrate that the use of MOTUs as a proxy for species can provide an alternative to morphospecies identification for the analysis of changes in community structure of hyperdiverse insect taxa. The efficient amplification of the D3-marker and the ability of the D3-MOTUs to reveal similar biodiversity patterns as analyses of morphospecies recommend its use in future molecular studies on biodiversity.},
  language  = {en}
}
@phdthesis{Thoma2011,
  author    = {Thoma, Eva Christina},
  title     = {Directed differentiation of pluripotent stem cells induced by single genes},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-54706},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2011},
  abstract  = {Pluripotency describes the ability of stem cells to form every cell type of the body.. Pluripotent stem cells are e.g. embryonic stem cells (ESCs), but also the so called induced pluripotent stem cells (IPS cells), that are generated by reprogramming differentiated somatic cells into a pluripotent state. Furthermore, it has been shown that spermatogonia (SG) derived from adult testes of mouse or human are pluripotent. Because of their ability to differentiate into every somatic cell type, pluripotent stem cells have a unique status in research and regenerative medicine. For the latter, they offer a valuable opportunity to replace destroyed tissues or organs. For basic research, stem cells represent a useful system to study differentiation or developmental processes that are difficult to access in the physiological situation e.g. during embryogenesis. Both applications, however, require methods that allow efficient and directed differentiation of stem cells into defined specialized cell types. This study first aims to investigate the differentiation potential of SG derived from the teleost fish medaka (Oryzias latipes). My results demonstrate that medaka SG are able to form different somatic cell types, namely adipocytes, melanocytes, osteoblasts, and neurons. This indicates that medake SG have retained a broad differentiation potential suggesting that pluripotency is not restricted to mouse and human SG but might be conserved among vertebrates. Next, I wanted to establish a differentiation method that is solely based on ectopic expression of genes known to be essential for the formation of certain somatic cell types - so called master regulators (MRs). My findings show that ectopic expression of the melanocyte-specific transcription factor mitf-m that has previously been shown to induce differentiation of medaka ESCs into pigment cells resulted in the formation of the same cell type in medaka SG. This approach could be used to generate other somatic cell types. Thus, ectopic expression of the MRs cbfa1 and mash1 in MF-SG was sufficient to induce differentiation into osteoblasts and neurons, respectively. Interestingly, these differentiation processes included the activation of genes that are expressed earlier during embryogenesis than the differentiation-inducing MR. Furthermore, my findings show that the approach of MR-induced differentiation can be transferred to mammalian stem cell systems. Ectopic expression of the neural transcription factor ngn2 was sufficient to induce efficient and rapid differentiation of neurons in mouse ESCs. This differentiation process also included the induction of genes that in vivo are activated at earlier stages that ngn2. By generating a transgenic cell line allowing induction of ectopic ngn2 expression, it was possible to obtain a relatively pure culture of functional neurons. Ngn2-induced differentiation did not require any additional signals and occurred even under pluripotency promoting conditions. Moreover, ectopic expression of ngn2 did also induce the formation of cells with neuronal morphology in IPS cells indicating that MR-induced differentiation is operative in different stem cell types. Furthermore, protein transduction of Ngn2 into mouse ESCs also resulted in a neuronal differentiation process up to the appearance of neural precursor cells. Last, my results show that MR-induced differentiation can also be used to generate other cell types than neurons from mouse ESCs. Myoblasts and macrophage-like cells were generated by ectopic expression of the MRs myoD and cebpa, respectively. Using transgenic cell lines enabling induction of MR expression it was possible to obtain mixed cultures with two different differentiation processes occurring in parallel. Altogether this study shows that ectopic expression of single genes is sufficient to induce directed differentiation of stem cells into defined cell types. The feasibility of this approach was demonstrated for different MRs and consequently different somatic cell types. Furthermore, MR induced differentiation was operative in different stem cell types from fish and mouse. Thus, one can conclude that certain genes are able to define cell fates in in vitro stem cell systems and that this cell fate defining potential appears to be a conserved feature in vertebrates. These findings therefore provide new insights in the role of MRs in cell commitment and differentiation processes. Furthermore, this study presents a new method to induce directed differentiation of stem cells that offers several advantages regarding efficiency, rapidness, and reproducibility. MR-induced differentiation therefore represents a promising tool for both stem cell research and regenerative medicine.},
  subject      = {Stammzelle},
  language  = {en}
}
@article{TaubenboeckWurmNetzbandetal.2011,
  author    = {Taubenb{\"o}ck, H and Wurm, M and Netzband, M and Zwenzner, H and Roth, A and Rahman, A and Dech, S},
  title     = {Flood risks in urbanized areas - multi-sensoral approaches using remotely sensed data for risk assessment},
  series = {NATURAL HAZARDS AND EARTH SYSTEM SCIENCES},
  volume    = {11},
  journal   = {NATURAL HAZARDS AND EARTH SYSTEM SCIENCES},
  number    = {2},
  doi       = {10.5194/nhess-11-431-2011},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-139605},
  pages     = {431-444},
  year      = {2011},
  abstract  = {Estimating flood risks and managing disasters combines knowledge in climatology, meteorology, hydrology, hydraulic engineering, statistics, planning and geography - thus a complex multi-faceted problem. This study focuses on the capabilities of multi-source remote sensing data to support decision-making before, during and after a flood event. With our focus on urbanized areas, sample methods and applications show multi-scale products from the hazard and vulnerability perspective of the risk framework. From the hazard side, we present capabilities with which to assess flood-prone areas before an expected disaster. Then we map the spatial impact during or after a flood and finally, we analyze damage grades after a flood disaster. From the vulnerability side, we monitor urbanization over time on an urban footprint level, classify urban structures on an individual building level, assess building stability and quantify probably affected people. The results show a large database for sustainable development and for developing mitigation strategies, ad-hoc coordination of relief measures and organizing rehabilitation.},
  language  = {en}
}
@article{TappeMeyerOesterleinetal.2011,
  author    = {Tappe, Dennis and Meyer, Michael and Oesterlein, Anett and Jaye, Assan and Frosch, Matthias and Schoen, Christoph and Pantchev, Nikola},
  title     = {Transmission of Armillifer armillatus Ova at Snake Farm, The Gambia, West Africa},
  series = {Emerging Infectious Diseases},
  volume    = {17},
  journal   = {Emerging Infectious Diseases},
  number    = {2},
  doi       = {10.3201/eid1702.101118},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-142804},
  pages     = {251-254},
  year      = {2011},
  abstract  = {Visceral pentastomiasis caused by Armillifer armillatus larvae was diagnosed in 2 dogs in The Gambia. Parasites were subjected to PCR; phylogenetic analysis confirmed relatedness with branchiurans/crustaceans. Our investigation highlights transmission of infective A. armillatus ova to dogs and, by serologic evidence, also to 1 human, demonstrating a public health concern.},
  language  = {en}
}
@phdthesis{Tang2011,
  author    = {Tang, Jian},
  title     = {Phenomenology of Neutrino Oscillations at the Neutrino Factory},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-66765},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2011},
  abstract  = {We consider the prospects for a neutrino factory measuring mixing angles, the CP violating phase and mass-squared differences by detecting wrong-charge muons arising from the chain \$\mu^+\to\nu_e\to\nu_\mu\to\mu^-\$ and the right-charge muons coming from the chain \$\mu^+\to\bar{\nu}_\mu\to\bar{\nu}_\mu\to\mu^+\$ (similar to \$\mu^-\$ chains), where \$\nu_e\to\nu_\mu\$ and \$\bar{\nu}_\mu\to\bar{\nu}_\mu\$ are neutrino oscillation channels through a long baseline. First, we study physics with near detectors and consider the treatment of systematic errors including cross section errors, flux errors, and background uncertainties. We illustrate for which measurements near detectors are required, discuss how many are needed, and what the role of the flux monitoring is. We demonstrate that near detectors are mandatory for the leading atmospheric parameter measurements if the neutrino factory has only one baseline, whereas systematic errors partially cancel if the neutrino factory complex includes the magic baseline. Second, we perform the baseline and energy optimization of the neutrino factory including the latest simulation results from the magnetized iron neutrino detector (MIND). We also consider the impact of \$\tau\$ decays, generated by appearance channels \$\nu_\mu \rightarrow \nu_\tau\$ and \$\nu_e \rightarrow \nu_\tau\$, on the discovery reaches of the mass orderings, the leptonic CP violation, and the non-zero \$\theta_{13}\$, which we find to be negligible for the considered detector. Third, we make a comparison of a high energy neutrino factory to a low energy neutrino factory and find that they are just two versions of the same experiment optimized for different regions of the parameter space. In addition, we briefly comment on whether it is useful to build the bi-magic baseline at the low energy neutrino factory. Finally, the effects of one additional massive sterile neutrino are discussed in the context of a combined short and long baseline setup. It is found that near detectors can provide the required sensitivity at the LSND-motivated \$\Delta m_{41}^2\$-range, while some sensitivity can also be obtained in the region of the atmospheric mass splitting introduced by the sterile neutrino from the long baselines.},
  subject      = {Neutrinooszillation},
  language  = {en}
}
@phdthesis{Tabares2011,
  author    = {Tabares, Paula},
  title     = {Antimicrobial, anti-protease and immunomodulatory activities of secondary metabolites from Caribbean sponges and their associated bacteria},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-67000},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2011},
  abstract  = {Marine sponges and their associated bacteria have been proven to be a rich source of novel secondary metabolites with therapeutic usefulness in infection and autoimmunity. This Ph.D. project aimed to isolate bioactive secondary metabolites from the marine sponges Amphimedon compressa, Aiolochroia crassa and Theonella swinhoei as well as from bacteria associated with different Caribbean sponges, specifically actinomycetes and sphingomonads. In this study, amphitoxin was isolated from the crude methanol extract of the sponge A. compressa and it was found to have antibacterial and anti-parasitic activities. Amphitoxin showed protease inhibitory activity when tested against the mammalian protease cathepsin B and the parasitic proteases rhodesain and falcipain-2. Furthermore, miraziridine A was identified in the dichloromethane extract of the sponge T. swinhoei collected offshore Israel in the Red Sea. Miraziridine A, a natural peptide isolated previously from the marine sponge Theonella aff. mirabilis, is a potent cathepsin B inhibitor with an IC50 value of 1.4 g/mL (2.1 M). Secondary metabolites from sponge-derived bacteria were also isolated and identified. A total of 79 strains belonging to 20 genera of the order Actinomycetales and seven strains belonging to two genera of the order Sphingomonadales were cultivated from 18 different Caribbean sponges and identified by 16S rRNA gene sequencing. Seven of these strains are likely to represent novel species. Crude extracts from selected strains were found to exhibit protease inhibition against cathepsins B and L, rhodesain, and falcipain-2 as well as immunomodulatory activities such as induction of cytokine release by human peripheral blood mononuclear cells. The isolates Sphingobium sp. CO105 and Lapillicoccus sp. BA53 were selected for cultivation, extraction and purification of bioactive metabolites based on initial bioactive screening results. The isoalloxazine isolumichrome was isolated from the strain Sphingobium sp. CO105 which inhibited the protease rhodesain with an IC50 of 0.2 M. The strain Lapillicoccus sp. BA53 was found to produce p-aminosalicylic acid methyl ester, which showed activity against the proteases cathepsins B and L, falcipain-2 and rhodesain. These results highlight the significance of marine sponge-associated bacteria to produce bioactive secondary metabolites with therapeutic potential in the treatment of infectious diseases and disorders of the immune system.},
  subject      = {Schw{\"a}mme},
  language  = {en}
}
@article{SzalayHillStritzkeretal.2011,
  author    = {Szalay, Aladar A. and Hill, Philip J. and Stritzker, Jochen and Scadeng, Miriam and Geissinger, Ulrike and Haddad, Daniel and Basse-L{\"u}sebrink, Thomas C. and Gbureck, Uwe and Jakob, Peter},
  title     = {Magnetic Resonance Imaging of Tumors Colonized with Bacterial Ferritin-Expressing Escherichia coli},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-75789},
  year      = {2011},
  abstract  = {Background: Recent studies have shown that human ferritin can be used as a reporter of gene expression for magnetic resonance imaging (MRI). Bacteria also encode three classes of ferritin-type molecules with iron accumulation properties. Methods and Findings: Here, we investigated whether these bacterial ferritins can also be used as MRI reporter genes and which of the bacterial ferritins is the most suitable reporter. Bacterial ferritins were overexpressed in probiotic E. coli Nissle 1917. Cultures of these bacteria were analyzed and those generating highest MRI contrast were further investigated in tumor bearing mice. Among members of three classes of bacterial ferritin tested, bacterioferritin showed the most promise as a reporter gene. Although all three proteins accumulated similar amounts of iron when overexpressed individually, bacterioferritin showed the highest contrast change. By site-directed mutagenesis we also show that the heme iron, a unique part of the bacterioferritin molecule, is not critical for MRI contrast change. Tumor-specific induction of bacterioferritin-expression in colonized tumors resulted in contrast changes within the bacteria-colonized tumors. Conclusions: Our data suggest that colonization and gene expression by live vectors expressing bacterioferritin can be monitored by MRI due to contrast changes},
  subject      = {Escherichia coli},
  language  = {en}
}
@phdthesis{Subramanian2011,
  author    = {Subramanian, Narayan},
  title     = {Role of NaV1.9 in activity dependent axon growth in embryonic cultured motoneurons},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-57536},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2011},
  abstract  = {Spontaneous neural activity has been shown to regulate crucial events in neurite growth including axonal branching and path finding. In animal models of spinal muscular atrophy (SMA) cultured embryonic mouse motoneurons show distinct defect in axon elongation and neural activity. This defect is governed by abnormal clustering of Ca2+ channels in the axonal regions and the protruding growth cone area. The mechanisms that regulate the opening of calcium channels in developing motoneurons are not yet clear. The question was addressed by blocking neural activity in embryonic cultured motoneurons by pharmacological inhibition of voltage-gated sodium channels (VGSC) by saxitoxin (STX) and tetrodotoxin (TTX). Low dosages of STX resulted in significant reduction of axon growth and neural activity in cultured motoneurons. This pharmacological treatment did not affect survival of motoneurons in comparison to control motoneurons that was grown in the presence of survival neurotrophic factors BDNF and CNTF. It was also found that STX was 10 times more potent than TTX a common inhibitor of VGSC with a reduced activity on the TTX-insensitive sodium channels NaV1.5, NaV1.8 and NaV1.9. Reverse Transcriptase-PCR experiments revealed the presence of NaV1.9 as the likely candidate that begins to express from embryonic stage sixteen in the mouse spinal cord. Immunolabelling experiments showed that the channel is expressed in the axonal compartments and axonal growth cones in cultured motoneurons. Suppression of NaV1.9 in cultured motoneurons by lentivirus mediated short hairpin-RNA (shRNA) resulted in shorter axon length in comparison with uninfected and scrambled constructs. Further, embryonic motoneurons cultured from NaV1.9 knockout mice also showed a significant reduction in neural activity and axon growth. The findings of this work highlight the role of NaV1.9 as an important contender in regulating activity dependent axon growth in embryonic cultured motoneurons. NaV1.9 could therefore be considered as a prospective molecule that could play an important role in regulating axon growth in motoneuron disease models like spinal muscular atrophy (SMA).},
  subject      = {Axon},
  language  = {en}
}
@phdthesis{Subota2011,
  author    = {Subota, Ines},
  title     = {Switches in trypanosome differentiation: ALBA proteins acting on post-transcriptional mRNA control},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-85707},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2011},
  abstract  = {Trypanosoma brucei is a digenetic eukaryotic parasite that develops in different tissues of a mammalian host and a tsetse fly. It is responsible for sleeping sickness in sub-saharan Africa. The parasite cycle involves more than nine developmental stages that can be clearly distinguished by their general morphology, their metabolism and the relative positioning of their DNA-containing organelles. During their development, trypanosomes remain exclusively extracellular and encounter changing environments with different physico-chemical properties (nutritional availability, viscosity, temperature, etc.). It has been proposed that trypanosomes use their flagellum as a sensing organelle, in agreement with the established role of structurally-related cilia in metazoa and ciliates. Recognition of environmental triggers is presumed to be at the initiation of differentiation events, leading to the parasite stage that is the best suited to the new environment. These changes are achieved by the modification of gene expression programmes, mostly underlying post-transcriptional control of mRNA transcripts. We first demonstrate that the RNA-binding proteins ALBA3/4 are involved in specific differentiation processes during the parasite development in the fly. They are cytosolic and expressed throughout the parasite cycle with the exception of the stages found in the tsetse fly proventriculus, as shown by both immunofluorescence and live cell analysis upon endogenous tagging with YFP. Knock-down of both proteins in the developmental stage preceding these forms leads to striking modifications: cell elongation, cell cycle arrest and relocalization of the nucleus in a posterior position, all typical of processes acting in parasites found in the proventriculus region. When ALBA3 is over-expressed from an exogenous copy during infection, it interferes with the relocalization of the nucleus in proventricular parasites. This is not observed for ALBA4 over-expression that does not visibly impede differentiation. Both ALBA3/4 proteins react to starvation conditions by accumulating in cytoplasmic stress granules together with DHH1, a recognized RNA-binding protein. ALBA3/4 proteins also partially colocalize with granules formed by polyA+ RNA in these conditions. We propose that ALBA are involved in trypanosome differentiation processes where they control a subset of developmentally regulated transcripts. These processes involving ALBA3/4 are likely to result from the specific activation of sensing pathways. In the second part of the thesis, we identify novel flagellar proteins that could act in sensing mechanisms. Several protein candidates were selected from a proteomic analysis of intact flagella performed in the host laboratory. This work validates their flagellar localization with high success (85\% of the proteins examined) and defines multiple different patterns of protein distribution in the flagellum. Two proteins are analyzed during development, one of them showing down-regulation in proventricular stages. The functional analysis of one novel flagellar membrane protein reveals its rapid dynamics within the flagellum but does not yield a visible phenotype in culture. This is coherent with sensory function that might not be needed in stable culture conditions, but could be required in natural conditions during development. In conclusion, this work adds new pieces to the puzzle of identifying molecular switches involved in developmental mRNA control and environmental sensing in trypanosome stages in the tsetse fly.},
  subject      = {Trypanosoma brucei},
  language  = {en}
}