@article{JansenOhlendorfErhardetal.2013, author = {Jansen, Nils and Ohlendorf, Birgit and Erhard, Arlette and Bruhn, Torsten and Bringmann, Gerhard and Imhoff, Johannes F.}, title = {Helicusin E, Isochromophilone X and Isochromophilone XI: New Chloroazaphilones Produced by the Fungus Bartalinia robillardoides Strain LF550}, series = {Marine Drugs}, volume = {11}, journal = {Marine Drugs}, number = {3}, doi = {10.3390/md11030800}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-129649}, pages = {800-816}, year = {2013}, abstract = {Microbial studies of the Mediterranean sponge Tethya aurantium led to the isolation of the fungus Bartalinia robillardoides strain LF550. The strain produced a number of secondary metabolites belonging to the chloroazaphilones. This is the first report on the isolation of chloroazaphilones of a fungal strain belonging to the genus Bartalinia. Besides some known compounds (helicusin A (1) and deacetylsclerotiorin (2)), three new chloroazaphilones (helicusin E (3); isochromophilone X (4) and isochromophilone XI (5)) and one new pentaketide (bartanolide (6)) were isolated. The structure elucidations were based on spectroscopic analyses. All isolated compounds revealed different biological activity spectra against a test panel of four bacteria: three fungi; two tumor cell lines and two enzymes.}, language = {en} } @article{RestMayoralFernandez2013, author = {Rest, Christina and Mayoral, Mar{\´i}a Jos{\´e} and Fern{\´a}ndez, Gustavo}, title = {Aqueous Self-Sorting in Extended Supramolecular Aggregates}, series = {International Journal of Molecular Sciences}, volume = {14}, journal = {International Journal of Molecular Sciences}, number = {1}, doi = {10.3390/ijms14011541}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-129435}, pages = {1541-1565}, year = {2013}, abstract = {Self-organization and self-sorting processes are responsible for the regulation and control of the vast majority of biological processes that eventually sustain life on our planet. Attempts to unveil the complexity of these systems have been devoted to the investigation of the binding processes between artificial molecules, complexes or aggregates within multicomponent mixtures, which has facilitated the emergence of the field of self-sorting in the last decade. Since, artificial systems involving discrete supramolecular structures, extended supramolecular aggregates or gel-phase materials in organic solvents or—to a lesser extent—in water have been investigated. In this review, we have collected diverse strategies employed in recent years to construct extended supramolecular aggregates in water upon self-sorting of small synthetic molecules. We have made particular emphasis on co-assembly processes in binary mixtures leading to supramolecular structures of remarkable complexity and the influence of different external variables such as solvent and concentration to direct recognition or discrimination processes between these species. The comprehension of such recognition phenomena will be crucial for the organization and evolution of complex matter.}, language = {en} } @phdthesis{Paasche2013, author = {Paasche, Alexander}, title = {Mechanistic Insights into SARS Coronavirus Main Protease by Computational Chemistry Methods}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-79029}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2013}, abstract = {The SARS virus is the etiological agent of the severe acute respiratory syndrome, a deadly disease that caused more than 700 causalities in 2003. One of its viral proteins, the SARS coronavirus main protease, is considered as a potential drug target and represents an important model system for other coronaviruses. Despite extensive knowledge about this enzyme, it still lacks an effective anti-viral drug. Furthermore, it possesses some unusual features related to its active-site region. This work gives atomistic insights into the SARS coronavirus main protease and tries to reveal mechanistic aspects that control catalysis and inhibition. Thereby, it applies state-of-the-art computational methods to develop models for this enzyme that are capable to reproduce and interpreting the experimental observations. The theoretical investigations are elaborated over four main fields that assess the accuracy of the used methods, and employ them to understand the function of the active-site region, the inhibition mechanism, and the ligand binding. The testing of different quantum chemical methods reveals that their performance depends partly on the employed model. This can be a gas phase description, a continuum solvent model, or a hybrid QM/MM approach. The latter represents the preferred method for the atomistic modeling of biochemical reactions. A benchmarking uncovers some serious problems for semi-empirical methods when applied in proton transfer reactions. To understand substrate cleavage and inhibition of SARS coronavirus main protease, proton transfer reactions between the Cys/His catalytic dyad are calculated. Results show that the switching between neutral and zwitterionic state plays a central role for both mechanisms. It is demonstrated that this electrostatic trigger is remarkably influenced by substrate binding. Whereas the occupation of the active-site by the substrate leads to a fostered zwitterion formation, the inhibitor binding does not mimic this effect for the employed example. The underlying reason is related to the coverage of the active-site by the ligand, which gives new implications for rational improvements of inhibitors. More detailed insights into reversible and irreversible inhibition are derived from in silico screenings for the class of Michael acceptors that follow a conjugated addition reaction. From the comparison of several substitution patterns it becomes obvious that different inhibitor warheads follow different mechanisms. Nevertheless, the initial formation of a zwitterionic catalytic dyad is found as a common precondition for all inhibition reactions. Finally, non-covalent inhibitor binding is investigated for the case of SARS coranavirus main protease in complex with the inhibitor TS174. A novel workflow is developed that includes an interplay between theory and experiment in terms of molecular dynamic simulation, tabu search, and X-ray structure refinement. The results show that inhibitor binding is possible for multiple poses and stereoisomers of TS174.}, subject = {SARS}, language = {en} } @phdthesis{Gsaenger2013, author = {Gs{\"a}nger, Marcel}, title = {Organic Thin-Film Transistors Based on Dipolar Squaraine Dyes}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-80588}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2013}, abstract = {In summary, it can be stated that the herein studied set of acceptor-substituted squaraine dyes can be seen as potent candidates for OTFTs. Furthermore, their transistor performance can be easily tuned to obtain hole mobilities up to 0.45 cm2/Vs from solution and 1.3 cm2/Vs from sublimation by choosing adequate deposition techniques. In the end, a probable structural model derived from studies of the thin-film morphology by methods such as optical spectroscopy, AFM and X-ray even facilitated the clarification of the observed charge transport behavior.}, subject = {Organische Chemie}, language = {en} } @phdthesis{Duerrbeck2013, author = {D{\"u}rrbeck, Nina}, title = {Photoinduced Charge-Transfer Processes in Redox Cascades based on Triarylamine Donors and the Perchlorinated Triphenylmethyl Radical Acceptor}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-90078}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2013}, abstract = {In this work, a series of redox cascades was synthesised and investigated in view of their photophysical and electrochemical properties. The cascades are based on a perchlorinated triphenylmethyl radical acceptor and two triarylamine donors. Absorption spectra showed the presence of charge-transfer bands in the NIR range of the spectra, which pointed to the population of a charge-transfer state between a triarylamine donor and the radical acceptor. A weak to moderate emission in the NIR range of the spectra was observed for all compounds in cyclohexane. Spectroelectrochemical measurements were used to investigate the characteristic spectral features of the oxidised and reduced species of all compounds. Transient absorption spectra in the ns- and fs-time regime revealed an additional hole transfer in the cascades between the triarylamine donors, resulting in a charge-separated state. Charge-separation and -recombination processes were found to be located in the ps-time regime.}, subject = {Ladungstransfer}, language = {en} } @article{BrixnerKochKullmannetal.2013, author = {Brixner, Tobias and Koch, Federico and Kullmann, Martin and Selig, Ulrike and Nuernberger, Patrick and G{\"o}tz, Daniel C. G. and Bringmann, Gerhard}, title = {Coherent two-dimensional electronic spectroscopy in the Soret band of a chiral porphyrin dimer}, series = {New Journal of Physics}, journal = {New Journal of Physics}, doi = {10.1088/1367-2630/15/2/025006}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-96139}, year = {2013}, abstract = {Using coherent two-dimensional (2D) electronic spectroscopy in fully noncollinear geometry, we observe the excitonic coupling of β,β'-linked bis[tetraphenylporphyrinato-zinc(II)] on an ultrafast timescale in the excited state. The results for two states in the Soret band originating from an excitonic splitting are explained by population transfer with approximately 100 fs from the energetically higher to the lower excitonic state. This interpretation is consistent with exemplary calculations of 2D spectra for a model four-level system with coupling.}, language = {en} }