@phdthesis{Tiwarekar2019, author = {Tiwarekar, Vishakha Rakesh}, title = {The APOBEC3G-regulated host factors REDD1 and KDELR2 restrict measles virus replication}, doi = {10.25972/OPUS-17952}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-179526}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {Measles is an extremely contagious vaccine-preventable disease responsible for more than 90000 deaths worldwide annually. The number of deaths has declined from 8 million in the pre-vaccination era to few thousands every year due to the highly efficacious vaccine. However, this effective vaccine is still unreachable in many developing countries due to lack of infrastructure, while in developed countries too many people refuse vaccination. Specific antiviral compounds are not yet available. In the current situation, only an extensive vaccination approach along with effective antivirals could help to have a measles-free future. To develop an effective antiviral, detailed knowledge of viral-host interaction is required. This study was undertaken to understand the interaction between MV and the innate host restriction factor APOBEC3G (A3G), which is well-known for its activity against human immunodeficiency virus (HIV). Restriction of MV replication was not attributed to the cytidine deaminase function of A3G, instead, we identified a novel role of A3G in regulating cellular gene functions. Among two of the A3G regulated host factors, we found that REDD1 reduced MV replication, whereas, KDELR2 hampered MV haemagglutinin (H) surface transport thereby affecting viral release. REDD1, a negative regulator of mTORC1 signalling impaired MV replication by inhibiting mTORC1. A3G regulated REDD1 expression was demonstrated to inversely correlate with MV replication. siRNA mediated silencing of A3G in primary human blood lymphocytes (PBL) reduced REDD1 levels and simultaneously increased MV titres. Also, direct depletion of REDD1 improved MV replication in PBL, indicating its role in A3G mediated restriction of MV. Based on these finding, a new role of rapamycin, a pharmacological inhibitor of mTORC1, was uncovered in successfully diminishing MV replication in Vero as well as in human PBL. The ER and Golgi resident receptor KDELR2 indirectly affected MV by competing with MV-H for cellular chaperones. Due to the sequestering of chaperones by KDELR2, they can no longer assist in MV-H folding and subsequent surface expression. Taken together, the two A3G-regulated host factors REDD1 and KDELR2 are mainly responsible for mediating its antiviral activity against MV.}, language = {en} } @phdthesis{Riad2019, author = {Riad, Noura}, title = {The Development of Dualsteric Ligands for the Elucidation of Mode of Activation of Muscarinic Receptors and their Selective Signaling}, doi = {10.25972/OPUS-17928}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-179282}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {GPCRs, particularly muscarinic receptors (mAChRs), are significant therapeutic targets in many physiological conditions. The significance of dualsteric hybrids selectively targeting mAChR subtypes is their great advantage in avoiding undesired side effects. This is attained by exploitation of the high affinity of ligand-binding to the orthosteric site and the structural diversity of the allosteric site to target an individual mAChR subtype, as well as offering signal bias to avoiding undesired transduction pathways. Furthermore, dualsteric targeting of mAChR subtypes helps in the elucidation of the physiological role of each individual mAChR subtype. The first project was the attempt of synthesis of the M2-preferring ligand AFDX-384. AFDX-384 is known to preferentially bind to the M2 receptor subtype as an orthosteric antagonist, with partial interaction with residues in the allosteric site. This project aimed to re-trace the synthesis route of AFDX-384, to open the door to its upscaling and the future synthesis of AFDX-type dualsteric ligands. The multi-step synthesis of AFDX-384 is achieved through the synthesis of its 2 precursors, the chloro acyl derivative VIII and the piperidinyl derivative IV. Upscaled synthesis of the piperidinyl derivative IV was attained. Synthesis of the chloro acyl compound VIII was attempted. Several trials to synthesize the benzopyridodiazepine nucleus as well as its chloro-acylation resulted in the production of the novel crystal structures V and VI. X-ray crystallography was also done for crystallized molecules of the closed-ring benzopyridodiazepine VII that was previously synthesized. Chloro-acylation reactions of compound VII using phosgene seem to be attainable when done using reflux overnight. However, the use of methanol to aid in elution during silica gel column chromatography converted the expected product to the carbamate analogue IX. Hence, further attempts in purification should refrain from the use of methanol. The use of triphosgene instead of phosgene demonstrates a cleaner route for further upscaled synthesis. The second project was the synthesis of dualsteric ligands involving variable orthosteric and allosteric moieties. Four different types of hybrids have been created over multiple steps. Dualsteric ligands have been synthesized using either a phthalimido- or 1,8-naphthalimidopropylamino moiety as the allosteric-binding group, coupled to either N-desmethyl pirenzepine or N-desmethyl clozapine using variable chain lengths. Furthermore, the synthesis of the dualsteric ligands involving N-desmethyl clozapine linked to either the super-agonist iperoxo or acetylcholine, and being connected using variable alkane chain lengths. Several reaction conditions have been investigated throughout the analysis of the optimal condition to conduct the critical final step of synthesis of these dualsteric hybrids, which involves the linking of the two segments of the hybrid together. The optimal method, which produced the least side products and highest yield, was to connect the two intermediates of the compound in absence of base, catalyst or microwaves while stirring at 35 °C for several days using acetonitrile as solvent (silica gel TLC monitoring, 0.2 M aqueous KNO3/MeOH 2:3). The ideal purification methods for the final compounds were found to be either crystallization from the reaction medium or using C18 reverse phase silica gel flash chromatography (using H2O/MeOH solvent system). All the hybrids will be subjected to pharmacological testing using the appropriate FRET assays.}, subject = {Muscarinrezeptor}, language = {en} } @article{SuchotzkiKakavandGamer2019, author = {Suchotzki, Kristina and Kakavand, Aileen and Gamer, Matthias}, title = {Validity of the reaction time concealed information test in a prison sample}, series = {Frontiers in Psychiatry}, volume = {9}, journal = {Frontiers in Psychiatry}, number = {745}, doi = {10.3389/fpsyt.2018.00745}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-177714}, year = {2019}, abstract = {Detecting whether a suspect possesses incriminating (e.g., crime-related) information can provide valuable decision aids in court. To this means, the Concealed Information Test (CIT) has been developed and is currently applied on a regular basis in Japan. But whereas research has revealed a high validity of the CIT in student and normal populations, research investigating its validity in forensic samples in scarce. This applies even more to the reaction time-based CIT (RT-CIT), where no such research is available so far. The current study tested the application of the RT-CIT for an imaginary mock crime scenario both in a sample of prisoners (n = 27) and a matched control group (n = 25). Results revealed a high validity of the RT-CIT for discriminating between crime-related and crime-unrelated information, visible in medium to very high effect sizes for error rates and reaction times. Interestingly, in accordance with theories that criminal offenders may have worse response inhibition capacities and that response inhibition plays a crucial role in the RT-CIT, CIT-effects in the error rates were even elevated in the prisoners compared to the control group. No support for this hypothesis could, however, be found in reaction time CIT-effects. Also, performance in a standard Stroop task, that was conducted to measure executive functioning, did not differ between both groups and no correlation was found between Stroop task performance and performance in the RT-CIT. Despite frequently raised concerns that the RT-CIT may not be applicable in non-student and forensic populations, our results thereby do suggest that such a use may be possible and that effects seem to be quite large. Future research should build up on these findings by increasing the realism of the crime and interrogation situation and by further investigating the replicability and the theoretical substantiation of increased effects in non-student and forensic samples.}, language = {en} } @article{GoosDejungWehmanetal.2019, author = {Goos, Carina and Dejung, Mario and Wehman, Ann M. and M-Natus, Elisabeth and Schmidt, Johannes and Sunter, Jack and Engstler, Markus and Butter, Falk and Kramer, Susanne}, title = {Trypanosomes can initiate nuclear export co-transcriptionally}, series = {Nucleic Acids Research}, volume = {47}, journal = {Nucleic Acids Research}, number = {1}, doi = {10.1093/nar/gky1136}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-177709}, pages = {266-282}, year = {2019}, abstract = {The nuclear envelope serves as important messenger RNA (mRNA) surveillance system. In yeast and human, several control systems act in parallel to prevent nuclear export of unprocessed mRNAs. Trypanosomes lack homologues to most of the involved proteins and their nuclear mRNA metabolism is non-conventional exemplified by polycistronic transcription and mRNA processing by trans-splicing. We here visualized nuclear export in trypanosomes by intra- and intermolecular multi-colour single molecule FISH. We found that, in striking contrast to other eukaryotes, the initiation of nuclear export requires neither the completion of transcription nor splicing. Nevertheless, we show that unspliced mRNAs are mostly prevented from reaching the nucleus-distant cytoplasm and instead accumulate at the nuclear periphery in cytoplasmic nuclear periphery granules (NPGs). Further characterization of NPGs by electron microscopy and proteomics revealed that the granules are located at the cytoplasmic site of the nuclear pores and contain most cytoplasmic RNA-binding proteins but none of the major translation initiation factors, consistent with a function in preventing faulty mRNAs from reaching translation. Our data indicate that trypanosomes regulate the completion of nuclear export, rather than the initiation. Nuclear export control remains poorly understood, in any organism, and the described way of control may not be restricted to trypanosomes.}, language = {en} } @techreport{ImgrundJanieschFischeretal.2019, author = {Imgrund, Florian and Janiesch, Christian and Fischer, Marcus and Winkelmann, Axel}, title = {Success Factors for Process Modeling Projects: An Empirical Analysis}, doi = {10.25972/OPUS-17924}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-179246}, pages = {68}, year = {2019}, abstract = {Business process modeling is one of the most crucial activities of BPM and enables companies to realize various benefits in terms of communication, coordination, and distribution of organizational knowledge. While numerous techniques support process modeling, companies frequently face challenges when adopting BPM to their organization. Existing techniques are often modified or replaced by self-developed approaches so that companies cannot fully exploit the benefits of standardization. To explore the current state of the art in process modeling as well as emerging challenges and potential success factors, we conducted a large-scale quantitative study. We received feedback from 314 respondents who completed the survey between July 2 and September 6, 2017. Thus, our study provides in-depth insights into the status quo of process modeling and allows us to provide three major contributions. Our study suggests that the success of process modeling projects depends on four major factors, which we extracted using exploratory factor analysis. We found employee education, management involvement, usability of project results, and the companies' degree of process orientation to be decisive for the success of a process modeling project. We conclude this report with a summary of results and present potential avenues for future research. We thereby emphasize the need of quantitative and qualitative insights to process modeling in practice is needed to strengthen the quality of process modeling in practice and to be able to react quickly to changing conditions, attitudes, and possible constraints that practitioners face.}, language = {en} } @article{PetschkeHelmStaab2019, author = {Petschke, Danny and Helm, Ricardo and Staab, Torsten E.M.}, title = {Data on pure tin by Positron Annihilation Lifetime Spectroscopy (PALS) acquired with a semi-analog/digital setup using DDRS4PALS}, series = {Data in Brief}, volume = {22}, journal = {Data in Brief}, doi = {10.1016/j.dib.2018.11.121}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-177698}, pages = {16-29}, year = {2019}, abstract = {Positron annihilation lifetime spectroscopy (PALS) provides a powerful technique for non-destructive microstructure investigations in a broad field of material classes such as metals, semiconductors, polymers or porous glasses. Even though this method is well established for more than five decades, no proper standardization for the used setup configuration and subsequent data processing exists. Eventually, this could lead to an insufficiency of data reproducibility and avoidable deviations. Here we present experimentally obtained and simulated data of positron lifetime spectra at various statistics measured on pure tin (4N-Sn) by using a semi-analog/digital setup, where the digital section consists of the DRS4 evaluation board, "Design and performance of the 6 GHz waveform digitizing chip DRS4" [1]. The analog section consists of nuclear instrument modules (NIM), which externally trigger the DRS4 evaluation board to reduce the digitization and, thus, increase the acquisition efficiency. For the experimentally obtained lifetime spectra, 22Na sealed in Kapton foil served as a positron source, whereas 60Co was used for the acquisition of the prompt spectrum, i.e. the quasi instrument response function. Both types of measurements were carried out under the same conditions. All necessary data and information regarding the data acquisition and data reduction are provided to allow reproducibility by other research groups.}, language = {en} } @article{LinsenmannMonoranuAlkonyietal.2019, author = {Linsenmann, Thomas and Monoranu, Camelia M. and Alkonyi, Balint and Westermaier, Thomas and Hagemann, Carsten and Kessler, Almuth F. and Ernestus, Ralf-Ingo and L{\"o}hr, Mario}, title = {Cerebellar liponeurocytoma - molecular signature of a rare entity and the importance of an accurate diagnosis}, series = {Interdisciplinary Neurosurgery}, volume = {16}, journal = {Interdisciplinary Neurosurgery}, doi = {10.1016/j.inat.2018.10.017}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-177652}, pages = {7-11}, year = {2019}, abstract = {Background: Cerebellar liponeurocytoma is an extremely rare tumour entity of the central nervous system. It is histologically characterised by prominent neuronal/neurocytic differentiation with focal lipidisation and corresponding histologically to WHO grade II. It typically develops in adults, and usually shows a low proliferative potential. Recurrences have been reported in almost 50\% of cases, and in some cases the recurrent tumour may display increased mitotic activity and proliferation index, vascular proliferations and necrosis. Thus pathological diagnosis of liponeurocytoma is challenging. This case presentation highlights the main clinical, radiographic and pathological features of a cerebellar liponeurocytoma. Case presentation: A 59-year-old, right-handed woman presented at our department with a short history of persistent headache, vertigo and gait disturbances. Examination at presentation revealed that the patient was awake, alert and fully oriented. The cranial nerve status was normal. Uncertainties were noted in the bilateral finger-to-nose testing with bradydiadochokinesis on both sides. Strength was full and no pronator drift was observed. Sensation was intact. No signs of pyramidal tract dysfunction were detected. Her gait appeared insecure. The patient underwent surgical resection. Afterward no further disturbances could be detected. Conclusions: To date >40 cases of liponeurocytoma have been reported, including cases with supratentorial location. A review of the 5 published cases of recurrent cerebellar. Liponeurocytoma revealed that the median interval between the first and second relapse was rather short, indicating uncertain malignant potential. The most recent WHO classification of brain tumours (2016) classifies the cerebellar liponeurocytoma as a separate entity and assigns the tumour to WHO grade II. Medulloblastoma is the most important differential diagnosis commonly seen in children and young adults. In contrast, cerebellar liponeurocytoma is typically diagnosed in adults. The importance of accurate diagnosis should not be underestimated especially in the view of possible further therapeutic interventions and for the determination of the patient's prognosis.}, language = {en} } @article{BratengeierHolubyevWegener2019, author = {Bratengeier, Klaus and Holubyev, Kostyantyn and Wegener, Sonja}, title = {Steeper dose gradients resulting from reduced source to target distance—a planning system independent study}, series = {Journal of Applied Clinical Medical Physics}, volume = {20}, journal = {Journal of Applied Clinical Medical Physics}, number = {1}, doi = {10.1002/acm2.12490}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-177424}, pages = {89-100}, year = {2019}, abstract = {Purpose: To quantify the contribution of penumbra in the improvement of healthy tissue sparing at reduced source-to-axis distance (SAD) for simple spherical target and different prescription isodoses (PI). Method: A TPS-independent method was used to estimate three-dimensional (3D) dose distribution for stereotactic treatment of spherical targets of 0.5 cm radius based on single beam two-dimensional (2D) film dosimetry measurements. 1 cm target constitutes the worst case for the conformation with standard Multi-Leaf Collimator (MLC) with 0.5 cm leaf width. The measured 2D transverse dose cross-sections and the profiles in leaf and jaw directions were used to calculate radial dose distribution from isotropic beam arrangement, for both quadratic and circular beam openings, respectively. The results were compared for standard (100 cm) and reduced SAD 70 and 55 cm for different PI. Results: For practical reduction of SAD using quadratic openings, the improvement of healthy tissue sparing (HTS) at distances up to 3 times the PTV radius was at least 6\%-12\%; gradient indices (GI) were reduced by 3-39\% for PI between 40\% and 90\%. Except for PI of 80\% and 90\%, quadratic apertures at SAD 70 cm improved the HTS by up to 20\% compared to circular openings at 100 cm or were at least equivalent; GI were 3\%-33\% lower for reduced SAD in the PI range 40\%-70\%. For PI = 80\% and 90\% the results depend on the circular collimator model. Conclusion: Stereotactic treatments of spherical targets delivered at reduced SAD of 70 or 55 cm using MLC spare healthy tissue around the target at least as good as treatments at SAD 100 cm using circular collimators. The steeper beam penumbra at reduced SAD seems to be as important as perfect target conformity. The authors argue therefore that the beam penumbra width should be addressed in the stereotactic studies.}, language = {en} } @article{BeykanFaniJensenetal.2019, author = {Beykan, Seval and Fani, Melpomeni and Jensen, Svend Borup and Nicolas, Guillaume and Wild, Damian and Kaufmann, Jens and Lassmann, Michael}, title = {In vivo biokinetics of \(^{177}\)Lu-OPS201 in Mice and Pigs as a Model for Predicting Human Dosimetry}, series = {Contrast Media \& Molecular Imaging}, volume = {2019}, journal = {Contrast Media \& Molecular Imaging}, doi = {10.1155/2019/6438196}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-177382}, pages = {6438196}, year = {2019}, abstract = {Introduction. \(^{177}\)Lu-OPS201 is a high-affinity somatostatin receptor subtype 2 antagonist for PRRT in patients with neuroendocrine tumors. The aim is to find the optimal scaling for dosimetry and to compare the biokinetics of \(^{177}\)Lu-OPS201 in animals and humans. Methods. Data on biokinetics of \(^{177}\)Lu-OPS201 were analyzed in athymic nude Foxn1\(^{nu}\) mice (28 F, weight: 26 ± 1 g), Danish Landrace pigs (3 F-1 M, weight: 28 ± 2 kg), and patients (3 F-1 M, weight: 61 ± 17 kg) with administered activities of 0.19-0.27 MBq (mice), 97-113 MBq (pigs), and 850-1086 MBq (patients). After euthanizing mice (up to 168 h), the organ-specific activity contents (including blood) were measured. Multiple planar and SPECT/CT scans were performed until 250 h (pigs) and 72 h (patients) to quantify the uptake in the kidneys and liver. Blood samples were taken up to 23 h (patients) and 300 h (pigs). In pigs and patients, kidney protection was applied. Time-dependent uptake data sets were created for each species and organ/tissue. Biexponential fits were applied to compare the biokinetics in the kidneys, liver, and blood of each species. The time-integrated activity coefficients (TIACs) were calculated by using NUKFIT. To determine the optimal scaling, several methods (relative mass scaling, time scaling, combined mass and time scaling, and allometric scaling) were compared. Results. A fast blood clearance of the compound was observed in the first phase (<56 h) for all species. In comparison with patients, pigs showed higher liver retention. Based on the direct comparison of the TIACs, an underestimation in mice (liver and kidneys) and an overestimation in pigs' kidneys compared to the patient data (kidney TIAC: mice = 1.4 h, pigs = 7.7 h, and patients = 5.8 h; liver TIAC: mice = 0.7 h, pigs = 4.1 h, and patients = 5.3 h) were observed. Most similar TIACs were obtained by applying time scaling (mice) and combined scaling (pigs) (kidney TIAC: mice = 3.9 h, pigs = 4.8 h, and patients = 5.8 h; liver TIAC: mice = 0.9 h, pigs = 4.7 h, and patients = 5.3 h). Conclusion. If the organ mass ratios between the species are high, the combined mass and time scaling method is optimal to minimize the interspecies differences. The analysis of the fit functions and the TIACs shows that pigs are better mimicking human biokinetics.}, language = {en} } @article{MagyarWagnerThomasetal.2019, author = {Magyar, Attila and Wagner, Martin and Thomas, Phillip and Malsch, Carolin and Schneider, Reinhard and St{\"o}rk, Stefan and Heuschmann, Peter U and Leyh, Rainer G and Oezkur, Mehmet}, title = {HO-1 concentrations 24 hours after cardiac surgery are associated with the incidence of acute kidney injury: a prospective cohort study}, series = {International Journal of Nephrology and Renovascular Disease}, volume = {12}, journal = {International Journal of Nephrology and Renovascular Disease}, doi = {10.2147/IJNRD.S165308}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-177250}, pages = {9-18}, year = {2019}, abstract = {Background: Acute kidney injury (AKI) is a serious complication after cardiac surgery that is associated with increased mortality and morbidity. Heme oxygenase-1 (HO-1) is an enzyme synthesized in renal tubular cells as one of the most intense responses to oxidant stress linked with protective, anti-inflammatory properties. Yet, it is unknown if serum HO-1 induction following cardiac surgical procedure involving cardiopulmonary bypass (CPB) is associated with incidence and severity of AKI. Patients and methods: In the present study, we used data from a prospective cohort study of 150 adult cardiac surgical patients. HO-1 measurements were performed before, immediately after and 24 hours post-CPB. In univariate and multivariate analyses, the association between HO-1 and AKI was investigated. Results: AKI with an incidence of 23.3\% (35 patients) was not associated with an early elevation of HO-1 after CPB in all patients (P=0.88), whereas patients suffering from AKI developed a second burst of HO-1 24 hours after CBP. In patients without AKI, the HO-1 concentrations dropped to baseline values (P=0.031). Furthermore, early HO-1 induction was associated with CPB time (P=0.046), while the ones 24 hours later lost this association (P=0.219). Conclusion: The association of the second HO-1 burst 24 hours after CBP might help to distinguish between the causality of AKI in patients undergoing CBP, thus helping to adapt patient stratification and management.}, language = {en} } @article{JahnDorbathKircheretal.2019, author = {Jahn, Daniel and Dorbath, Donata and Kircher, Stefan and Nier, Anika and Bergheim, Ina and Lenaerts, Kaatje and Hermanns, Heike M. and Geier, Andreas}, title = {Beneficial effects of vitamin D treatment in an obese mouse model of non-alcoholic steatohepatitis}, series = {Nutrients}, volume = {11}, journal = {Nutrients}, number = {1}, doi = {10.3390/nu11010077}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-177222}, pages = {77}, year = {2019}, abstract = {Serum vitamin D levels negatively correlate with obesity and associated disorders such as non-alcoholic steatohepatitis (NASH). However, the mechanisms linking low vitamin D (VD) status to disease progression are not completely understood. In this study, we analyzed the effect of VD treatment on NASH in mice. C57BL6/J mice were fed a high-fat/high-sugar diet (HFSD) containing low amounts of VD for 16 weeks to induce obesity, NASH and liver fibrosis. The effects of preventive and interventional VD treatment were studied on the level of liver histology and hepatic/intestinal gene expression. Interestingly, preventive and to a lesser extent also interventional VD treatment resulted in improvements of liver histology. This included a significant decrease of steatosis, a trend towards lower non-alcoholic fatty liver disease (NAFLD) activity score and a slight non-significant decrease of fibrosis in the preventive treatment group. In line with these changes, preventive VD treatment reduced the hepatic expression of lipogenic, inflammatory and pro-fibrotic genes. Notably, these beneficial effects occurred in conjunction with a reduction of intestinal inflammation. Together, our observations suggest that timely initiation of VD supplementation (preventive vs. interventional) is a critical determinant of treatment outcome in NASH. In the applied animal model, the improvements of liver histology occurred in conjunction with reduced inflammation in the gut, suggesting a potential relevance of vitamin D as a therapeutic agent acting on the gut-liver axis.}, language = {en} } @phdthesis{HechtgebWagener2019, author = {Hecht [geb. Wagener], Reinhard Johannes}, title = {Processing and Characterization of Bulk Heterojunction Solar Cells Based on New Organic n-Type Semiconductors}, doi = {10.25972/OPUS-16138}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-161385}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {This thesis established the fabrication of organic solar cells of DA dye donors and fullerene acceptors under ambient conditions in our laboratory, however, with reduced power conversion efficiencies compared to inert conditions. It was shown that moisture had the strongest impact on the stability and reproducibility of the solar cells. Therefore, utilization of robust materials, inverted device architectures and fast fabrication/characterization are recommended if processing takes place in air. Furthermore, the dyad concept was successfully explored in merocyanine dye-fullerene dyads and power conversion efficiencies of up to 1.14 \% and 1.59 \% were measured under ambient and inert conditions, respectively. It was determined that the major drawback in comparison to comparable BHJ devices was the inability of the dyad molecules to undergo phase separation. Finally, two series of small molecules were designed in order to obtain electron transport materials, using the acceptor-core-acceptor motive. By variation of the acceptor units especially the LUMO levels could be lowered effectively. Investigation of the compounds in organic thin film transistors helped to identify promising molecules with electron transport properties. Electron transport mobilities of up to 7.3 × 10-2 cm2 V-1 s-1 (ADA2b) and 1.39 × 10-2 cm2 V-1 s-1 (AπA1b) were measured in air for the ADA and AπA dyes, respectively. Investigation of selected molecules in organic solar cells proved that these molecules work as active layer components, even though power conversion efficiencies cannot compete with fullerene based devices yet. Thus, this thesis shows new possibilities that might help to develop and design small molecules as substitutes for fullerene acceptors.}, subject = {Heterosolarzelle}, language = {en} } @phdthesis{Slotta2019, author = {Slotta, Anja Maria}, title = {The Role of Protein Kinase D 1 in the regulation of murine adipose tissue function under physiological and pathophysiological conditions}, doi = {10.25972/OPUS-17911}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-179112}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {Adipocytes are specialized cells found in vertebrates to ensure survival in terms of adaption to food deficit and abundance. However, their dysfunction accounts for the pathophysiology of metabolic diseases such as T2DM. Preliminary data generated by Mona L{\"o}ffler suggested that PKD1 is involved in adipocyte function. Here, I show that PKD1 expression and activity is linked to lipid metabolism of murine adipocytes. PKD1 gene expression and activity was reduced in murine white adipose tissue upon fasting, a physiological condition which induces lipolysis. Isoproterenol-stimulated lipolysis in adipose tissue and 3T3-L1 adipocytes reduced PKD1 gene expression. Silencing ATGL in adipocytes inhibited isoproterenol-stimulated lipolysis, however, the β-adrenergic stimulation of ATGL-silenced adipocytes lowered PKD1 expression levels as well. Adipose tissue of obese mice exhibited high PKD1 RNA levels but paradoxically lower protein levels of phosphorylated PKD1-Ser916. However, HFD generated a second PKD1 protein product of low molecular weight in mouse adipose tissue. Furthermore, constitutively active PKD1 predominantly displayed nuclear localization in 3T3-L1 adipocytes containing many fat vacuoles. However, adipocytes overexpressing non-functional PKD1 contained fewer lipid droplets and PKD1-KD was distributed in cytoplasm. Most importantly, deficiency of PKD1 in mouse adipose tissue caused expression of genes involved in adaptive thermogenesis such as UCP-1 and thus generated brown-like phenotype adipocytes. Thus, PKD1 is implicated in adipose tissue function and presents an interesting target for therapeutic approaches in the prevention of obesity and associated diseases.}, subject = {adipocyte}, language = {en} } @phdthesis{Schaupp2019, author = {Schaupp, Daniel Norbert}, title = {Earnings Management in the Context of Earnings Quality, Corporate Governance and Corporate Social Responsibility}, doi = {10.25972/OPUS-15933}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-159337}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {Steigende Geschwindigkeit und Komplexit{\"a}t von Gesch{\"a}ftsprozessen und -beziehungen ver{\"a}ndern fundamental die Anspr{\"u}che an umfassende und werthaltige finanzielle und nicht-finanzielle Informationen {\"u}ber Unternehmen. Relevante Informationen in einem Gesch{\"a}ftsbericht m{\"u}ssen daher zunehmend Vorhersagecharakter besitzen, um ihre Daseinsberechtigung nicht zu verlieren. Die ad{\"a}quate L{\"o}sung existenter Prinzipal-Agenten- Konflikte bedarf zugleich einer detaillierten und objektiven Einsch{\"a}tzung der Leistung des Agenten, was zus{\"a}tzlich zur Wertrelevanz ein Mindestmaß an Verl{\"a}sslichkeit der berichteten Informationen bedingt. In diesem Spannungsfeld kommt den Standardsettern die Aufgabe zu, Rahmenbedingungen zu schaffen, die es dem Management erm{\"o}glichen, Spielr{\"a}ume bei der Erstellung der Berichte zu nutzen, um diesen Qualit{\"a}tsanspr{\"u}chen an Informationen {\"u}ber die aktuelle und zuk{\"u}nftige Lage des Unternehmens gerecht zu werden. Diese bewusst gesetzten M{\"o}glichkeiten der Einflussnahme durch das Management begreifen jedoch auch signifikante Risiken der opportunistisch motivierten Beeinflussung der Adressaten, welche unter der {\"U}berschrift Bilanzpolitik subsumiert werden k{\"o}nnen. Die in der empirischen Forschung g{\"a}ngige Klassifizierung unterscheidet zwischen der buchm{\"a}ßigen und realen Bilanzpolitik, wobei letztere im Vergleich eine gezielte Beeinflussung von Gesch{\"a}ftsvorf{\"a}llen und nicht deren ex-post Abbildung begreift. Kapitel 2 der vorliegenden Dissertation propagiert eine umfassende Auseinandersetzung mit der empirischen Messung von Bilanzpolitik. Das Fehlen einer zufriedenstellenden Ermittlung des aggregierten Ausmaßes von Bilanzpolitik erfordert hierbei die Anwendung verschiedener Regressionsmodelle. Im speziellen Kontext der empirischen Analyse von Bilanzpolitik im Bankensektor besteht diesbez{\"u}glich eine ausgepr{\"a}gte Heterogenit{\"a}t der verwendeten Modelle. Zugleich existiert nach wie vor keine systematische Analyse der Ans{\"a}tze und Modellierungsarten von Loan Loss Provisions, welche als elementares Vehikel der diskretion{\"a}ren Einflussnahme im Fokus der einschl{\"a}gigen Studien steht. Daher untersucht der Verfasser in Kapitel 2.1 pr{\"a}valente Modellierungsans{\"a}tze, erstellt einen Baukasten verschiedener Regressionsparameter und testet eine Vielzahl an Varianten im Hinblick auf die Validit{\"a}t der ermittelten bilanzpolitischen Gr{\"o}ßen. Eine derartige Analyse ist von elementarer Wichtigkeit f{\"u}r die Validit{\"a}t der Ergebnisse und der gezogenen Schl{\"u}sse aus empirischen Studien im Bankensektor und liefert daher einen wichtigen Beitrag zur Entwicklung und Einordnung vergangener und zuk{\"u}nftiger Analysen. Die Ergebnisse der zur Anwendung gebrachten Analysen und Tests zeigen, dass eine Vielzahl der existierenden Modelle eine ausreichende Passgenauigkeit aufweist. Jedoch sind gewisse Regressoren weniger wichtig als zun{\"a}chst angenommen. So k{\"o}nnen die Regressoren der Non-Performing Loans die Modellierung stark verbessern, w{\"a}hrend Loan Loss Reserves und Net Charge-Offs nur einen kleinen Beitrag leisten k{\"o}nnen. Im weiteren Verlauf l{\"a}sst sich zudem eine ausgepr{\"a}gte Nichtlinearit{\"a}t einzelner Regressoren aufzeigen, sowie dass ein Wechsel auf ein Modell mit Ber{\"u}cksichtigung von Endogenit{\"a}t nicht zwangsl{\"a}ufig zu einer verbesserten Modellierung f{\"u}hrt. Insgesamt kann die Studie als geeigneter Startpunkt f{\"u}r zuk{\"u}nftige Studien zu Bilanzpolitik im Bankensektor fungieren. Im anschließenden Kapitel 2.2 werden aus Gr{\"u}nden der Konsistenz Modellierung und Ergebnisse der Sch{\"a}tzung von Bilanzpolitik in nicht-finanziellen Industrien f{\"u}r die Studien in Kapitel 3 und 4 vorgestellt. Im Rahmen einer umfassenden Betrachtung der Qualit{\"a}t von Finanzinformationen sollte die bereits angesprochene Verl{\"a}sslichkeit der Rechnungslegung sichergestellt werden k{\"o}nnen. Hierbei spielt neben den Rahmenbedingungen der Rechnungslegung die Qualit{\"a}t der Attribute und Prozesse der Abschlusspr{\"u}fung eine gewichtige Rolle. Im Zuge dessen wird die Unabh{\"a}ngigkeit des externen Abschlusspr{\"u}fers von seinem Mandanten als eines der Kernattribute proklamiert, da diese Neutralit{\"a}t verleiht und simultan die Qualit{\"a}t der vollzogenen Abschlusspr{\"u}fungshandlungen erh{\"o}ht. Ein unabh{\"a}ngiger Wirtschaftspr{\"u}fer ist demzufolge besser in der Lage, das Ausmaß an Bilanzpolitik zu verringern, was wiederum eine Erh{\"o}hung der Qualit{\"a}t der Finanzinformationen nach sich zieht. Kapitel 3 widmet sich daher der Analyse der Unabh{\"a}ngigkeit von kleinen und mittelgroßen Abschlusspr{\"u}fern im deutschen Markt f{\"u}r Mandanten von {\"o}ffentlichem Interesse zwischen 2007 und 2014. Das Setting der Studie zeichnet sich dadurch aus, dass kleine und mittelgroße Wirtschaftspr{\"u}fer traditionell im Verdacht stehen, aufgrund einer eingeschr{\"a}nkten Unabh{\"a}ngigkeit von kapitalmarktorientierten Mandanten diesen ein h{\"o}heres Maß an Spielr{\"a}umen zuzugestehen, c.p., es wird eine geringere Qualit{\"a}t der Pr{\"u}fung und damit gr{\"o}ßerer Spielraum f{\"u}r Bilanzpolitik vermutet. Das europ{\"a}ische und insbesondere deutsche Umfeld qualifiziert sich durch divergente gesetzlich vorgeschriebene Schwellenwerte der Abh{\"a}ngigkeit des Wirtschaftspr{\"u}fers f{\"u}r eine differenzierte Analyse der Nichtlinearit{\"a}t der Zusammenh{\"a}nge. Des Weiteren bilden die in Deutschland pr{\"a}valenten Transparenzberichte eine profunde Datenbasis f{\"u}r die Ermittlung von Abh{\"a}ngigkeitsmaßen, die im speziellen Marktsegment eine {\"u}berlegene Messung der Abh{\"a}ngigkeit der betrachteten Pr{\"u}fer erm{\"o}glichen. Die vorliegende Arbeit in diesem Kapitel w{\"a}hlt auf Basis der pr{\"a}valenten gesetzlichen Regelungen ein nicht-lineares Forschungsdesign und legt nahe, dass kleine und mittelgroße Wirtschaftspr{\"u}fers im speziellen Marktsegment der kapitalmarktorientierten Mandanten mit steigender Abh{\"a}ngigkeit eine erh{\"o}hte Pr{\"u}fungsqualit{\"a}t liefern, bis sich die Effekte an einer hohen Schwelle der Abh{\"a}ngigkeit umkehren. Dieser Wendepunkt spiegelt zugleich formulierte gesetzliche Schwellenwerte wider. Kleinen und mittelgroße Abschlusspr{\"u}fer scheinen trotz steigender Abh{\"a}ngigkeit eine h{\"o}here Pr{\"u}fungsanstrengung zu w{\"a}hlen, welche buchm{\"a}ßige Bilanzpolitik einschr{\"a}nkt und damit die Qualit{\"a}t der Finanzinformationen erh{\"o}ht. Im Fokus steht hierbei vermutlich das Bestreben des Festigens und Ausbauens einer Reputation im Marktsegment der kapitalmarktorientierten Mandanten. Ab {\"U}berschreiten eines kritischen Schwellenwertes scheint hingegen die gestiegene Abh{\"a}ngigkeit die Reputationseffekte zu dominieren. Die Ergebnisse der Studie legen zudem den Schluss nahe, dass Mandanten bei einer Einschr{\"a}nkung der buchm{\"a}ßigen Bilanzpolitik geneigt sind mehr reale Bilanzpolitik einzusetzen, deren Einschr{\"a}nkung nicht origin{\"a}rer Gegenstand der Pr{\"u}fung durch den Abschlusspr{\"u}fer ist. Die geschilderten Ergebnisse erweisen sich als sehr robust gegen{\"u}ber zahlreichen Ver{\"a}nderungen und Tests wie etwa einer de-facto Office Level und Partner Level Analyse. Zudem kann gezeigt werden, dass die dominierenden Reputationseffekte wohl in der eingeschr{\"a}nkten Wichtigkeit der kapitalmarktorientierten Mandanten f{\"u}r den Gesamtumsatz begr{\"u}ndet liegen, welche von bisherigen Studien systematisch {\"u}bersch{\"a}tzt wird. Kapitel 4 richtet den Fokus auf origin{\"a}r nicht-finanzielle Nachhaltigkeitsstrategien und deren Einfluss auf bilanzpolitisches Verhalten. Bisherige Studien betrachten die heterogene Gruppe der Corporate Social Responsibility (CSR) Unternehmen dabei {\"u}berwiegend in ihrer Gesamtheit. Die vorliegende Analyse in Kapitel 4 versucht demgegen{\"u}ber die untersuchten Unternehmen in pr{\"a}valente Anreizgruppen zu trennen, um vermutete diverse Anreize zur Investition in CSR mit den Anreizen zu Bilanzpolitik in Verbindung zu bringen. Hierf{\"u}r wird ein europ{\"a}isches Setting mit kapitalmarktorientierten Unternehmen der ASSET4 Datenbank zwischen 2005 und 2014 gew{\"a}hlt. Durch eine gezielte Verkn{\"u}pfung der Anreize zur Investition mit der Entscheidung zur einschl{\"a}gigen Berichterstattung werden Unternehmen mit pr{\"a}valenten Reputationsanreizen von Unternehmen mit Tendenzen zur intrinsischen, philanthropischen Motivation abgegrenzt. Die Ergebnisse lassen vermuten, dass Unternehmen mit Reputationsanreizen bilanzpolitisch konform handeln und buchm{\"a}ßige durch reale Bilanzpolitik zu ersetzen versuchen. Hierdurch lassen sich sowohl Risiken der medialen Bilanzschelte minimieren als auch hohe Gewinne als Teil einer Gesamtreputationsstrategie realisieren. Des Weiteren kann gezeigt werden, dass diese strategische Positionierung einen Einfluss auf die Wirkungsweise von Corporate Governance (CG) hat. W{\"a}hrend Maße f{\"u}r gute CG mit einem geringeren Ausmaß an buchm{\"a}ßiger Bilanzpolitik einhergehen, w{\"a}hlen Unternehmen mit Reputationsanreizen koh{\"a}rent mit ihrer strategischen Tendenz erneut ein h{\"o}heres Maß an realer Bilanzpolitik. Insgesamt deuten die Ergebnisse der Studie daraufhin, dass gewisse Unternehmen CSR als Reputationsinstrument nutzen und sich nicht konform einer nachhaltigen Strategie im Hinblick auf Bilanzpolitik verhalten.}, subject = {Bilanzpolitik}, language = {en} } @phdthesis{Ruecker2019, author = {R{\"u}cker, Christoph}, title = {Development of a prevascularized bone implant}, doi = {10.25972/OPUS-17886}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-178869}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {The skeletal system forms the mechanical structure of the body and consists of bone, which is hard connective tissue. The tasks the skeleton and bones take over are of mechanical, metabolic and synthetic nature. Lastly, bones enable the production of blood cells by housing the bone marrow. Bone has a scarless self-healing capacity to a certain degree. Injuries exceeding this capacity caused by trauma, surgical removal of infected or tumoral bone or as a result from treatment-related osteonecrosis, will not heal. Critical size bone defects that will not heal by themselves are still object of comprehensive clinical investigation. The conventional treatments often result in therapies including burdening methods as for example the harvesting of autologous bone material. The aim of this thesis was the creation of a prevascularized bone implant employing minimally invasive methods in order to minimize inconvenience for patients and surgical site morbidity. The basis for the implant was a decellularized, naturally derived vascular scaffold (BioVaSc-TERM®) providing functional vessel structures after reseeding with autologous endothelial cells. The bone compartment was built by the combination of the aforementioned scaffold with synthetic β-tricalcium phosphate. In vitro culture for tissue maturation was performed using bioreactor technology before the testing of the regenerative potential of the implant in large animal experiments in sheep. A tibia defect was treated without the anastomosis of the implant's innate vasculature to the host's circulatory system and in a second study, with anastomosis of the vessel system in a mandibular defect. While the non-anastomosed implant revealed a mostly osteoconductive effect, the implants that were anastomosed achieved formation of bony islands evenly distributed over the defect. In order to prepare preconditions for a rapid approval of an implant making use of this vascularization strategy, the manufacturing of the BioVaSc-TERM® as vascularizing scaffold was adjusted to GMP requirements.}, subject = {Tissue Engineering}, language = {en} } @phdthesis{Kirilmaz2019, author = {Kirilmaz, Ozan Seyitali}, title = {Thin Film Growth and Characterization of the Transition Metal Oxides Magnetite and Layered Perovskite Iridates}, doi = {10.25972/OPUS-17891}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-178917}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {This thesis describes the growth and characterization of both the all-oxide heterostructure Fe3O4/ZnO and the spin-orbit coupling driven layered perovskite iridates. As for Fe3O4/ZnO, the 100\% spin-polarized Fe3O4 is a promising spin electrode candidate for spintronic devices. However, the single crystalline ZnO substrates exhibit different polar surface termination which, together with substrate preparation method, can drastically affect the physical properties of Fe3O4/ZnO heterostructures. In this thesis two different methods of substrate preparation were investigated: a previously used in situ method involving sputtering and annealing treatments and a recent ex situ method containing only the annealing procedure. For the latter, the annealing treatment was performed in dry and humid O2 gas flow for the O- and Zn-terminated substrates, respectively, to produce atomically at surfaces as verified by atomic force microscopy(AFM). With these methods, four different ZnO substrates were fabricated and used further for Fe3O4 film growth. Fe3O4 films of 20 nm thickness were successfully grown by reactive molecular beam epitaxy. AFM measurements reveal a higher film surface roughness for the samples with in situ prepared substrates. Moreover, X-ray photoelectron spectroscopy (XPS) measurements indicate significant Zn substitution within the Fe3O4 film for these samples, whereas the samples with ex situ prepared substrates show stoichiometric Fe3O4 films. X-ray diffraction measurements confirm the observations from XPS, revealing additional peaks due to Zn substitution in Fe3O4 films grown on in situ prepared ZnO substrates. Conductivity, as well as magnetometry, measurements show the presence of Zn-doped ferrites in films grown on in situ prepared substrates. Such unintentionally intercalated Zn-doped ferrites dramatically change the electrical and magnetic properties of the films and, therefore, are not preferred in a high-quality heterostructure. X-ray reflectivity (XRR) measurements show for the film grown on ex situ prepared Zn-terminated substrate a variation of film density close to the interface which is also confirmed by transmission electron microscopy (TEM). Using polarized neutron reflectometry, magnetic depth profiles of the films grown on ex situ prepared substrates clearly indicate Fe3O4 layers with reduced magnetization at the interfaces. This result is consistent with earlier observations made by resonant magnetic X-ray reflectometry (RMXR), but in contrast to the findings from XRR and TEM of this thesis. A detailed TEM study of all four samples shows that the sample with ex situ prepared O-terminated substrate has the sharpest interface, whereas those with ex situ prepared Zn-terminated as well as in situ prepared substrates indicate rougher interfaces. STEM-EELS composition profiles of the samples reveal the Zn substitution in the films with in situ prepared substrates and therefore confirm the presence of Zn-doped ferrites. Moreover, a change of the Fe oxidation state of the first Fe layer at the interface which was observed in previous studies done by RMXR, was not verified for the samples with in situ prepared substrates thus leaving the question of a possible presence of the magnetically dead layer open. Furthermore, density functional theory calculations were performed to determine the termination dependent layer sequences which are ...-Zn-O-(interface)-[Fe(octa)-O-Fe(tetra)-Fe(octa)-Fe(tetra)-O]-[...]-... and ...-O-Zn-(interface)-[O-Fe(octa)-O-Fe(tetra)-Fe(octa)-Fe(tetra)]-[...]-... for the samples with O- and Zn-terminated substrates, respectively. Spin density calculations show that in case of O-termination the topmost substrate layers imitate the spin polarization of film layers close to the interface. Here, the first O layer is affected much stronger than the first Zn layer. Due to the strong decrease of this effect toward deeper substrate layers, the substrate surface is supposed to be sensitive to the contiguous spin polarization of the film. Thus, the topmost O layer of the O-terminated substrate could play the most essential role for effective spin injection into ZnO. The 5d transition metal oxides Ba2IrO4 (BIO) and Sr2IrO4 (SIO) are associated with the Ruddlesden-Popper iridate series with phase type "214" (RP{214), and due to the strong spin-orbit coupling belong to the class of Mott insulators. Moreover, they show many similarities of the isostructural high Tc-cuprate superconductors, e.g. crystal structure, magnetism and electronic band structure. Therefore, it is of great interest to activate a potential superconducting phase in (RP{214) iridates. However, only a small number of publications on PLD grown (RP{214) iridates in the literature exists. Furthermore, published data of soft X-ray angle resolved photoemission spectroscopy (SX-ARPES) experiments mainly originate from measurements which were performed on single crystals or MBE grown films of SIO and BIO. In this thesis La-doped SIO films (La0:2Sr1:8IrO4, further referred as LSIO) were used to pursue a potential superconducting phase. A set of characterization methods was used to analyze the quality of the PLD grown BIO, SIO and LSIO films. AFM measurements demonstrate that thick PLD grown(RP{214) iridate films have rougher surfaces, indicating a transition from a 2D layer-bylayer growth (which is demonstrated by RHEED oscillations) to a 3D island-like growth mode. In addition, chemical depth profiling XPS measurements indicate an increase of the O and Ir relative concentrations in the topmost film layers. Constant energy k-space maps and energy distribution curves (EDCs) measured by SX-ARPES show for every grown film only weak energy band dispersions, which are in strong contrast to the results obtained on the MBE grown films and single crystals from the literature. In this thesis, a subsequent TEM study reveals missing SrO layers within the grown films which occur mainly in the topmost layers, confirming the results and suggestions from XPS and SX-ARPES data: the PLD grown films have defects and, therefore, incoherently scatter photoelectrons. Nevertheless, the LSIO film shows small additional spectral weight between the highsymmetry M points close to the Fermi level which can be attributed to quasiparticle states which, in turn, indicates the formation of a Fermi-arc. However, neither conductivity measurements nor valence band analysis via XPS confirm an activation of a superconducting phase or presence of spectral weight of quasiparticle states at the Fermi level in this LSIO film. It is possible that these discovered difficulties in growth are responsible for the low number of SX-ARPES publications on PLD grown (RP{214) iridate films. For further investigations of (RP{214) iridate films by SX-ARPES, their PLD growth recipes have to be improved to create high quality single crystalline films without imperfections.}, subject = {Magnetit}, language = {en} } @unpublished{MuessigThalerDewhurstetal.2019, author = {Muessig, Jonas H. and Thaler, Melanie and Dewhurst, Rian D. and Paprocki, Valerie and Seufert, Jens and Mattock, James D. and Vargas, Alfredo and Braunschweig, Holger}, title = {Phosphine-Stabilized Diiododiborenes: Isolable Diborenes with Six Labile Bonds}, series = {Angewandte Chemie, International Edition}, journal = {Angewandte Chemie, International Edition}, doi = {10.1002/anie.201814230}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-178608}, year = {2019}, abstract = {The lability of B=B, B-P and B-halide bonds is combined in the syntheses of the first diiododiborenes. In a series of reactivity tests, these diiododiborenes demonstrate cleavage of all six of their central bonds in different ways, leading to products of B=B hydrogenation and dihalogenation as well as halide exchange.}, language = {en} } @phdthesis{Grotemeyer2019, author = {Grotemeyer, Alexander}, title = {Characterisation and application of new optogenetic tools in \(Drosophila\) \(melanogaster\)}, doi = {10.25972/OPUS-17879}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-178793}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {Since Channelrhodopsins has been described first and introduced successfully in freely moving animals (Nagel et al., 2003 and 2005), tremendous impact has been made in this interesting field of neuroscience. Subsequently, many different optogenetic tools have been described and used to address long-lasting scientific issues. Furthermore, beside the 'classical' Channelrhodopsin-2 (ChR2), basically a cation-selective ion channel, also altered ChR2 descendants, anion selective channels and light-sensitive metabotropic proteins have expanded the optogenetic toolbox. However, in spite of this variety of different tools most researches still pick Channelrhodopsin-2 for their optogenetic approaches due to its well-known kinetics. In this thesis, an improved Channelrhodopsin, Channelrhodopsin2-XXM (ChR2XXM), is described, which might become an useful tool to provide ambitious neuroscientific approaches by dint of its characteristics. Here, ChR2XXM was chosen to investigate the functional consequences of Drosophila larvae lacking latrophilin in their chordotonal organs. Finally, the functionality of GtACR, was checked at the Drosophila NMJ. For a in-depth characterisation, electrophysiology along with behavioural setups was employed. In detail, ChR2XXM was found to have a better cellular expression pattern, high spatiotemporal precision, substantial increased light sensitivity and improved affinity to its chromophore retinal, as compared to ChR2. Employing ChR2XXM, effects of latrophilin (dCIRL) on signal transmission in the chordotonal organ could be clarified with a minimum of side effects, e.g. possible heat response of the chordotonal organ, due to high light sensitivity. Moreover, optogenetic activation of the chordotonal organ, in vivo, led to behavioural changes. Additionally, GtACR1 was found to be effective to inhibit motoneuronal excitation but is accompanied by unexpected side effects. These results demonstrate that further improvement and research of optogenetic tools is highly valuable and required to enable researchers to choose the best fitting optogenetic tool to address their scientific questions.}, subject = {Optogenetik}, language = {en} } @phdthesis{Mehringer2019, author = {Mehringer, Sarah}, title = {Essays on Intergenerational Income Mobility in Germany and the United States}, doi = {10.25972/OPUS-16069}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-160693}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {This dissertation consists of three contributions. Each addresses one specific aspect of intergenerational income mobility and is intended to be a stand-alone analysis. All chapters use comparable data for Germany and the United States to conduct country comparisons. As there are usually a large number of studies available for the United States, this approach is useful for comparing the empirical results to the existing literature. The first part conducts a direct country comparison of the structure and extent of intergenerational income mobility in Germany and the United States. In line with existing results, the estimated intergenerational income mobility of 0.49 in the United States is significantly higher than that of 0.31 in Germany. While the results for the intergenerational rank mobility are relatively similar, the level of intergenerational income share mobility is higher in the United States than in Germany. There are no significant indications of a nonlinear run of intergenerational income elasticity. A final decomposition of intergenerational income inequality shows both greater income mobility and stronger progressive income growth for Germany compared to the United States. Overall, no clear ranking of the two countries can be identified. To conclude, several economic policy recommendations to increase intergenerational income mobility in Germany are discussed. The second part examines the transmission channels of intergenerational income persistence in Germany and the United States. In principle, there are two ways in which well-off families may influence the adult incomes of their children: first through direct investments in their children's human capital (investment effect ), and second through the indirect transmission of human capital from parents to children (endowment effect ). In order to disentangle these two effects, a descriptive as well as a structural decomposition method are utilized. The results suggest that the investment effect and the endowment effect each account for approximately half of the estimated intergenerational income elasticity in Germany, while the investment effect is substantially more influential in the United States with a share of around 70 percent. With regard to economic policy, these results imply that equality of opportunity for children born to poor parents cannot be reached by the supply of financial means alone. Conversely, an efficient policy must additionally substitute for the missing direct transmission of human capital within socio-economically weak families. The third part explicitly focuses on the intergenerational income mobility among daughters. The restriction to men is commonly made in the empirical literature due to women's lower labor market participation. While most men work full-time, the majority of (married) women still work only part-time or not at all. Especially with the occurrence of assortative mating, daughters from well-off families are likely to marry rich men and might decide to reduce their labor supply as a result. Thus, the individual labor income of a daughter might not be a good indicator for her actual economic status. The baseline regression analysis shows a higher intergenerational income elasticity in Germany and a lower intergenerational income elasticity in the United States for women as compared to men. However, a separation by marital status reveals that in both countries unmarried women exhibit a higher intergenerational income elasticity than unmarried men, while married women feature a lower intergenerational income elasticity than married men. The reason for the lower mobility of unmarried women turns out to be a stronger human capital transmission from fathers to daughters than to sons. The higher mobility of married women is driven by a weaker human capital transmission and a higher labor supply elasticity with respect to spousal income for women as compared to men. In order to further study the effects of assortative mating, the subsample of married children is analyzed by different types of income. It shows that the estimated intergenerational income elasticity of children's household incomes is even higher than that of their individual incomes. This can be seen as an indication for strong assortative mating. If household income is interpreted as a measure of children's actual economic welfare, there are barely any differences between sons and daughters. The intergenerational income elasticity of spousal income with respect to parental income is again relatively high, which in turn supports the hypothesis of strong assortative mating. The elasticity of the sons-in-law with respect to their fathers-in-law in Germany is even higher than that of the sons with respect to their own fathers.}, subject = {Deutschland}, language = {en} } @phdthesis{Schmithausen2019, author = {Schmithausen, Patrick Alexander Gerhard}, title = {Three-dimensional fluorescence image analysis of megakaryocytes and vascular structures in intact bone}, doi = {10.25972/OPUS-17854}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-178541}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {The thesis provides insights in reconstruction and analysis pipelines for processing of three-dimensional cell and vessel images of megakaryopoiesis in intact murine bone. The images were captured in a Light Sheet Fluorescence Microscope. The work presented here is part of Collaborative Research Centre (CRC) 688 (project B07) of the University of W{\"u}rzburg, performed at the Rudolf-Virchow Center. Despite ongoing research within the field of megakaryopoiesis, its spatio-temporal pattern of megakaryopoiesis is largely unknown. Deeper insight to this field is highly desirable to promote development of new therapeutic strategies for conditions related to thrombocytopathy as well as thrombocytopenia. The current concept of megakaryopoiesis is largely based on data from cryosectioning or in vitro studies indicating the existence of spatial niches within the bone marrow where specific stages of megakaryopoiesis take place. Since classic imaging of bone sections is typically limited to selective two-dimensional views and prone to cutting artefacts, imaging of intact murine bone is highly desired. However, this has its own challenges to meet, particularly in image reconstruction. Here, I worked on processing pipelines to account for irregular specimen staining or attenuation as well as the extreme heterogeneity of megakaryocyte morphology. Specific challenges for imaging and image reconstruction are tackled and solution strategies as well as remaining limitations are presented and discussed. Fortunately, modern image processing and segmentation strongly benefits from continuous advances in hardware as well as software-development. This thesis exemplifies how a combined effort in biomedicine, computer vision, data processing and image technology leads to deeper understanding of megakaryopoiesis. Tailored imaging pipelines significantly helped elucidating that the large megakaryocytes are broadly distributed throughout the bone marrow facing a surprisingly dense vessel network. No evidence was found for spatial niches in the bone marrow, eventually resulting in a revised model of megakaryopoiesis.}, subject = {Megakaryozytopoese}, language = {en} } @phdthesis{Niebler2019, author = {Niebler, Thomas}, title = {Extracting and Learning Semantics from Social Web Data}, doi = {10.25972/OPUS-17866}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-178666}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {Making machines understand natural language is a dream of mankind that existed since a very long time. Early attempts at programming machines to converse with humans in a supposedly intelligent way with humans relied on phrase lists and simple keyword matching. However, such approaches cannot provide semantically adequate answers, as they do not consider the specific meaning of the conversation. Thus, if we want to enable machines to actually understand language, we need to be able to access semantically relevant background knowledge. For this, it is possible to query so-called ontologies, which are large networks containing knowledge about real-world entities and their semantic relations. However, creating such ontologies is a tedious task, as often extensive expert knowledge is required. Thus, we need to find ways to automatically construct and update ontologies that fit human intuition of semantics and semantic relations. More specifically, we need to determine semantic entities and find relations between them. While this is usually done on large corpora of unstructured text, previous work has shown that we can at least facilitate the first issue of extracting entities by considering special data such as tagging data or human navigational paths. Here, we do not need to detect the actual semantic entities, as they are already provided because of the way those data are collected. Thus we can mainly focus on the problem of assessing the degree of semantic relatedness between tags or web pages. However, there exist several issues which need to be overcome, if we want to approximate human intuition of semantic relatedness. For this, it is necessary to represent words and concepts in a way that allows easy and highly precise semantic characterization. This also largely depends on the quality of data from which these representations are constructed. In this thesis, we extract semantic information from both tagging data created by users of social tagging systems and human navigation data in different semantic-driven social web systems. Our main goal is to construct high quality and robust vector representations of words which can the be used to measure the relatedness of semantic concepts. First, we show that navigation in the social media systems Wikipedia and BibSonomy is driven by a semantic component. After this, we discuss and extend methods to model the semantic information in tagging data as low-dimensional vectors. Furthermore, we show that tagging pragmatics influences different facets of tagging semantics. We then investigate the usefulness of human navigational paths in several different settings on Wikipedia and BibSonomy for measuring semantic relatedness. Finally, we propose a metric-learning based algorithm in adapt pre-trained word embeddings to datasets containing human judgment of semantic relatedness. This work contributes to the field of studying semantic relatedness between words by proposing methods to extract semantic relatedness from web navigation, learn highquality and low-dimensional word representations from tagging data, and to learn semantic relatedness from any kind of vector representation by exploiting human feedback. Applications first and foremest lie in ontology learning for the Semantic Web, but also semantic search or query expansion.}, subject = {Semantik}, language = {en} } @phdthesis{Kress2019, author = {Kreß, Sebastian}, title = {Development and proof of concept of a biological vascularized cell-based drug delivery system}, doi = {10.25972/OPUS-17865}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-178650}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {A major therapeutic challenge is the increasing incidence of chronic disorders. The persistent impairment or loss of tissue function requires constitutive on-demand drug availability optimally achieved by a drug delivery system ideally directly connected to the blood circulation of the patient. However, despite the efforts and achievements in cell-based therapies and the generation of complex and customized cell-specific microenvironments, the generation of functional tissue is still unaccomplished. This study demonstrates the capability to generate a vascularized platform technology to potentially overcome the supply restraints for graft development and clinical application with immediate anastomosis to the blood circulation. The ability to decellularize segments of the rat intestine while preserving the ECM for subsequent reendothelialization was proven. The reestablishment of a functional arteriovenous perfusion circuit enabled the supply of co-cultured cells capable to replace the function of damaged tissue or to serve as a drug delivery system. During in vitro studies, the applicability of the developed miniaturized biological vascularized scaffold (mBioVaSc-TERM®) was demonstrated. While indicating promising results in short term in vivo studies, long term implantations revealed current limitations for the translation into clinical application. The gained insights will impact further improvements of quality and performance of this promising platform technology for future regenerative therapies.}, subject = {Vaskularisation}, language = {en} } @misc{Breitenbach2019, author = {Breitenbach, Tim}, title = {Codes of examples for SQH method}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-178588}, year = {2019}, abstract = {Code examples for the paper "On the SQH Scheme to Solve Nonsmooth PDE Optimal Control Problems" by Tim Breitenbach and Alfio Borz{\`i} published in the journal "Numerical Functional Analysis and Optimization", in 2019, DOI: 10.1080/01630563.2019.1599911}, language = {en} } @unpublished{SuessWehnerDostaletal.2019, author = {S{\"u}ß, Jasmin and Wehner, Johannes G. and Dost{\´a}l, Jakub and Engel, Volker and Brixner, Tobias}, title = {Mapping of exciton-exciton annihilation in a molecular dimer via fifth-order femtosecond two-dimensional spectroscopy}, series = {Journal of Physical Chemistry Letters}, journal = {Journal of Physical Chemistry Letters}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-178482}, year = {2019}, abstract = {We present a theoretical study on exciton-exciton annihilation (EEA) in a molecular dimer. This process is monitored using a fifth-order coherent two-dimensional (2D) spectroscopy as was recently proposed by Dost{\´a}l et al. [Nat. Commun. 9, 2466 (2018)]. Using an electronic three-level system for each monomer, we analyze the different paths which contribute to the 2D spectrum. The spectrum is determined by two entangled relaxation processes, namely, the EEA and the direct relaxation of higher lying excited states. It is shown that the change of the spectrum as a function of a pulse delay can be linked directly to the presence of the EEA process.}, subject = {Exziton}, language = {en} } @phdthesis{Fleischmann2019, author = {Fleischmann, Pauline Nikola}, title = {Starting foraging life: Early calibration and daily use of the navigational system in \(Cataglyphis\) ants}, doi = {10.25972/OPUS-15995}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-159951}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {Cataglyphis ants are famous for their navigational abilities. They live in hostile habitats where they forage as solitary scavengers covering distances of more than hundred thousand times their body lengths. To return to their nest with a prey item - mainly other dead insects that did not survive the heat - Cataglyphis ants constantly keep track of their directions and distances travelled. The navigational strategy is called path integration, and it enables an ant to return to the nest in a straight line using its home vector. Cataglyphis ants mainly rely on celestial compass cues, like the position of the sun or the UV polarization pattern, to determine directions, and they use an idiothetic step counter and optic flow to measure distances. In addition, they acquire information about visual, olfactory and tactile landmarks, and the wind direction to increase their chances of returning to the nest safe and sound. Cataglyphis' navigational performance becomes even more impressive if one considers their life style. Most time of their lives, the ants stay underground and perform tasks within the colony. When they start their foraging careers outside the nest, they have to calibrate their compass systems and acquire all information necessary for navigation during subsequent foraging. This navigational toolkit is not instantaneously available, but has to be filled with experience. For that reason, Cataglyphis ants perform a striking behavior for up to three days before actually foraging. These so-called learning walks are crucial for the success as foragers later on. In the present thesis, both the ontogeny and the fine-structure of learning walks has been investigated. Here I show with displacement experiments that Cataglyphis ants need enough space and enough time to perform learning walks. Spatially restricted novices, i. e. na{\"i}ve ants, could not find back to the nest when tested as foragers later on. Furthermore, ants have to perform several learning walks over 1-3 days to gain landmark information for successful homing as foragers. An increasing number of feeder visits also increases the importance of landmark information, whereas in the beginning ants fully rely on their path-integration vector. Learning walks are well-structured. High-speed video analysis revealed that Cataglyphis ants include species-specific rotational elements in their learning walks. Greek Cataglyphis ants (C. noda and C. aenescens) inhabiting a cluttered pine forest perform voltes, small walked circles, and pirouettes, tight turns about the body axis with frequent stopping phases. During the longest stopping phases, the ants gaze back to their nest entrance. The Tunisian Cataglyphis fortis ants inhabiting featureless saltpans only perform voltes without directed gazes. The function of voltes has not yet been revealed. In contrast, the fine structure of pirouettes suggests that the ants take snapshots of the panorama towards their homing direction to memorize the nest's surroundings. The most likely hypothesis was that Cataglyphis ants align the gaze directions using their path integrator, which gets directional input from celestial cues during foraging. To test this hypothesis, a manipulation experiment was performed changing the celestial cues above the nest entrance (no sun, no natural polarization pattern, no UV light). The accurately directed gazes to the nest entrance offer an easily quantifiable readout suitable to ask the ants where they expect their nest entrance. Unexpectedly, all novices performing learning walks under artificial sky conditions looked back to the nest entrance. This was especially surprising, because neuronal changes in the mushroom bodies and the central complex receiving visual input could only be induced with the natural sky when comparing test animals with interior workers. The behavioral findings indicated that Cataglyphis ants use another directional reference system to align their gaze directions during the longest stopping phases of learning walk pirouettes. One possibility was the earth's magnetic field. Indeed, already disarraying the geomagnetic field at the nest entrance with an electromagnetic flat coil indicated that the ants use magnetic information to align their looks back to the nest entrance. To investigate this finding further, ants were confronted with a controlled magnetic field using a Helmholtz coil. Elimination of the horizontal field component led to undirected gaze directions like the disarray did. Rotating the magnetic field about 90°, 180° or -90° shifted the ants' gaze directions in a predictable manner. Therefore, the earth's magnetic field is a necessary and sufficient reference system for aligning nest-centered gazes during learning-walk pirouettes. Whether it is additionally used for other navigational purposes, e. g. for calibrating the solar ephemeris, remains to be tested. Maybe the voltes performed by all Cataglyphis ant species investigated so far can help to answer this question..}, subject = {Cataglyphis}, language = {en} } @phdthesis{vonKistowski2019, author = {von Kistowski, J{\´o}akim Gunnarsson}, title = {Measuring, Rating, and Predicting the Energy Efficiency of Servers}, doi = {10.25972/OPUS-17847}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-178478}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {Energy efficiency of computing systems has become an increasingly important issue over the last decades. In 2015, data centers were responsible for 2\% of the world's greenhouse gas emissions, which is roughly the same as the amount produced by air travel. In addition to these environmental concerns, power consumption of servers in data centers results in significant operating costs, which increase by at least 10\% each year. To address this challenge, the U.S. EPA and other government agencies are considering the use of novel measurement methods in order to label the energy efficiency of servers. The energy efficiency and power consumption of a server is subject to a great number of factors, including, but not limited to, hardware, software stack, workload, and load level. This huge number of influencing factors makes measuring and rating of energy efficiency challenging. It also makes it difficult to find an energy-efficient server for a specific use-case. Among others, server provisioners, operators, and regulators would profit from information on the servers in question and on the factors that affect those servers' power consumption and efficiency. However, we see a lack of measurement methods and metrics for energy efficiency of the systems under consideration. Even assuming that a measurement methodology existed, making decisions based on its results would be challenging. Power prediction methods that make use of these results would aid in decision making. They would enable potential server customers to make better purchasing decisions and help operators predict the effects of potential reconfigurations. Existing energy efficiency benchmarks cannot fully address these challenges, as they only measure single applications at limited sets of load levels. In addition, existing efficiency metrics are not helpful in this context, as they are usually a variation of the simple performance per power ratio, which is only applicable to single workloads at a single load level. Existing data center efficiency metrics, on the other hand, express the efficiency of the data center space and power infrastructure, not focusing on the efficiency of the servers themselves. Power prediction methods for not-yet-available systems that could make use of the results provided by a comprehensive power rating methodology are also lacking. Existing power prediction models for hardware designers have a very fine level of granularity and detail that would not be useful for data center operators. This thesis presents a measurement and rating methodology for energy efficiency of servers and an energy efficiency metric to be applied to the results of this methodology. We also design workloads, load intensity and distribution models, and mechanisms that can be used for energy efficiency testing. Based on this, we present power prediction mechanisms and models that utilize our measurement methodology and its results for power prediction. Specifically, the six major contributions of this thesis are: We present a measurement methodology and metrics for energy efficiency rating of servers that use multiple, specifically chosen workloads at different load levels for a full system characterization. We evaluate the methodology and metric with regard to their reproducibility, fairness, and relevance. We investigate the power and performance variations of test results and show fairness of the metric through a mathematical proof and a correlation analysis on a set of 385 servers. We evaluate the metric's relevance by showing the relationships that can be established between metric results and third-party applications. We create models and extraction mechanisms for load profiles that vary over time, as well as load distribution mechanisms and policies. The models are designed to be used to define arbitrary dynamic load intensity profiles that can be leveraged for benchmarking purposes. The load distribution mechanisms place workloads on computing resources in a hierarchical manner. Our load intensity models can be extracted in less than 0.2 seconds and our resulting models feature a median modeling error of 12.7\% on average. In addition, our new load distribution strategy can save up to 10.7\% of power consumption on a single server node. We introduce an approach to create small-scale workloads that emulate the power consumption-relevant behavior of large-scale workloads by approximating their CPU performance counter profile, and we introduce TeaStore, a distributed, micro-service-based reference application. TeaStore can be used to evaluate power and performance model accuracy, elasticity of cloud auto-scalers, and the effectiveness of power saving mechanisms for distributed systems. We show that we are capable of emulating the power consumption behavior of realistic workloads with a mean deviation less than 10\% and down to 0.2 watts (1\%). We demonstrate the use of TeaStore in the context of performance model extraction and cloud auto-scaling also showing that it may generate workloads with different effects on the power consumption of the system under consideration. We present a method for automated selection of interpolation strategies for performance and power characterization. We also introduce a configuration approach for polynomial interpolation functions of varying degrees that improves prediction accuracy for system power consumption for a given system utilization. We show that, in comparison to regression, our automated interpolation method selection and configuration approach improves modeling accuracy by 43.6\% if additional reference data is available and by 31.4\% if it is not. We present an approach for explicit modeling of the impact a virtualized environment has on power consumption and a method to predict the power consumption of a software application. Both methods use results produced by our measurement methodology to predict the respective power consumption for servers that are otherwise not available to the person making the prediction. Our methods are able to predict power consumption reliably for multiple hypervisor configurations and for the target application workloads. Application workload power prediction features a mean average absolute percentage error of 9.5\%. Finally, we propose an end-to-end modeling approach for predicting the power consumption of component placements at run-time. The model can also be used to predict the power consumption at load levels that have not yet been observed on the running system. We show that we can predict the power consumption of two different distributed web applications with a mean absolute percentage error of 2.2\%. In addition, we can predict the power consumption of a system at a previously unobserved load level and component distribution with an error of 1.2\%. The contributions of this thesis already show a significant impact in science and industry. The presented efficiency rating methodology, including its metric, have been adopted by the U.S. EPA in the latest version of the ENERGY STAR Computer Server program. They are also being considered by additional regulatory agencies, including the EU Commission and the China National Institute of Standardization. In addition, the methodology's implementation and the underlying methodology itself have already found use in several research publications. Regarding future work, we see a need for new workloads targeting specialized server hardware. At the moment, we are witnessing a shift in execution hardware to specialized machine learning chips, general purpose GPU computing, FPGAs being embedded into compute servers, etc. To ensure that our measurement methodology remains relevant, workloads covering these areas are required. Similarly, power prediction models must be extended to cover these new scenarios.}, subject = {Benchmarking}, language = {en} } @phdthesis{Bangert2019, author = {Bangert, Philip}, title = {Magnetic Attitude Control of Miniature Satellites and its Extension towards Orbit Control using an Electric Propulsion System}, isbn = {978-3-945459-28-7 (online)}, issn = {1868-7474}, doi = {10.25972/OPUS-17702}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-177020}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {The attitude and orbit control system of pico- and nano-satellites to date is one of the bottle necks for future scientific and commercial applications. A performance increase while keeping with the satellites' restrictions will enable new space missions especially for the smallest of the CubeSat classes. This work addresses methods to measure and improve the satellite's attitude pointing and orbit control performance based on advanced sensor data analysis and optimized on-board software concepts. These methods are applied to spaceborne satellites and future CubeSat missions to demonstrate their validity. An in-orbit calibration procedure for a typical CubeSat attitude sensor suite is developed and applied to the UWE-3 satellite in space. Subsequently, a method to estimate the attitude determination accuracy without the help of an external reference sensor is developed. Using this method, it is shown that the UWE-3 satellite achieves an in-orbit attitude determination accuracy of about 2°. An advanced data analysis of the attitude motion of a miniature satellite is used in order to estimate the main attitude disturbance torque in orbit. It is shown, that the magnetic disturbance is by far the most significant contribution for miniature satellites and a method to estimate the residual magnetic dipole moment of a satellite is developed. Its application to three CubeSats currently in orbit reveals that magnetic disturbances are a common issue for this class of satellites. The dipole moments measured are between 23.1mAm² and 137.2mAm². In order to autonomously estimate and counteract this disturbance in future missions an on-board magnetic dipole estimation algorithm is developed. The autonomous neutralization of such disturbance torques together with the simplification of attitude control for the satellite operator is the focus of a novel on-board attitude control software architecture. It incorporates disturbance torques acting on the satellite and automatically optimizes the control output. Its application is demonstrated in space on board of the UWE-3 satellite through various attitude control experiments of which the results are presented here. The integration of a miniaturized electric propulsion system will enable CubeSats to perform orbit control and, thus, open up new application scenarios. The in-orbit characterization, however, poses the problem of precisely measuring very low thrust levels in the order of µN. A method to measure this thrust based on the attitude dynamics of the satellite is developed and evaluated in simulation. It is shown, that the demonstrator mission UWE-4 will be able to measure these thrust levels with a high accuracy of 1\% for thrust levels higher than 1µN. The orbit control capabilities of UWE-4 using its electric propulsion system are evaluated and a hybrid attitude control system making use of the satellite's magnetorquers and the electric propulsion system is developed. It is based on the flexible attitude control architecture mentioned before and thrust vector pointing accuracies of better than 2° can be achieved. This results in a thrust delivery of more than 99\% of the desired acceleration in the target direction.}, subject = {Satellit}, language = {en} } @phdthesis{Wistlich2019, author = {Wistlich, Laura}, title = {NCO-sP(EO-stat-PO) as functional additive for biomaterials' development}, doi = {10.25972/OPUS-17836}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-178365}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {The aim of this thesis was the application of the functional prepolymer NCO-sP(EO-stat-PO) for the development of new biomaterials. First, the influence of the star-shaped polymers on the mechanical properties of biocements and bone adhesives was investigated. 3-armed star-shaped macromers were used as an additive for a mineral bone cement, and the influence on the mechanical properties was studied. Additionally, a previously developed bone adhesive was examined regarding cytocompatibility. The second topic was the examination of novel functionalization steps which were performed on the surface of electrospun fibers modified with NCO-sP(EO-stat-PO). This established method of functionalizing electrospun meshes was advanced regarding the modification with proteins which was then demonstrated in a biological application. Two different kinds of antibodies were immobilized on the fiber surface in a consecutive manner and the influence of these proteins on the cell behavior was investigated. The final topic involved the quantification of surface-bound peptide sequences. By functionalization of the peptides with the UV-reactive molecule 2-mercaptopyridine it was possible to quantify this compound via UV measurements by cleavage of disulfide bridges and indirectly draw conclusions about the number of immobilized peptides. In the field of mineral biocements and bone adhesives, NCO-sP(EO-stat-PO) was able to influence the setting behavior and mechanical performance of mineral bone cements based on calcium phosphate chemistry. The addition of NCO-sP(EO-stat-PO) resulted in a pseudo-ductile fracture behavior due to the formation of a hydrogel network in the cement, which was then mineralized by nanosized hydroxyapatite crystals following cement setting. Accordingly, a commercially available aluminum silicate cement from civil engineering could be modified. In addition, it could be shown that the use of NCO-sP(EO-stat-PO) is beneficial for adjusting specific material properties of bone adhesives. Here, the crosslinking behavior of the prepolymer in an aqueous medium was exploited to form an interpenetrating network (IPN) together with a photochemically curing poly(ethylene glycol) dimethacrylate (PEGDMA) matrix. This could be used for the development of a bone adhesive with an improved adhesion to bone in a wet environment. The developed bone adhesive was further investigated in terms of possible influences of the initiator systems. In addition, the material system was tested for cytocompatibility by using different cell lines. Moreover, the preparation of electrospun fiber meshes via solution electrospinning consisting of poly(lactide-co-glycolide) (PLGA) as a backbone polymer and NCO-sP(EO-stat-PO) as functional additive is an established method for the application of the meshes as a replacement of the native extracellular matrix (ECM). In general, these fibers reveal diameters in the nanometer range, are protein and cell repellent due to the hydrophilic properties of the prepolymer and show a specific biofunctionalization by immobilization of peptide sequences. Here, the isocyanate groups presented on the fiber surface after electrospinning were used to carry out various functionalization steps, while retaining the properties of protein and cell repellency. The modification of the electrospun fibers involved the immobilization of analogs or antagonists of tumor necrosis factor (TNF) and the indirect detection of these by interaction with a light-producing enzyme. Here, a multimodal modification of the fiber surface with RGD to mediate cell adhesion and two different antibodies could be achieved. After culturing the cell line HT1080, the pro- or anti-inflammatory response of cells could be detected by IL-8 specific ELISA measurements. Furthermore, the quantification of molecules on the surface of electrospun fibers was investigated. It was tested whether the detection by means of super-resolution microscopy would be possible. Therefore, experiments were performed with short amino acid sequences such as RGD for quantification by fluorescence microscopy. Based on earlier results, in which a UV-spectrometrically active molecule was used to detect the quantification of RGD, it was shown that short peptides can also be quantified in a small scale on flat functional substrates (2D) such as NCO-sP(EO-stat-PO) hydrogel coatings, and modified electrospun fibers produced from PLGA and NCO-sP(EO-stat-PO) (3D). In addition, a collagen sequence was used to prove that a successful quantification can be carried out as well for longer peptide chains. These studies have revealed that NCO-sP(EO-stat-PO) can serve as a functional additive for many applications and should be considered for further studies on the development of novel biomaterials. The rapid crosslinking reaction, the resulting hydrogel formation and the biocompatibility are to be mentioned as positive properties, which makes the prepolymer interesting for future applications.}, subject = {Sternpolymere}, language = {en} } @phdthesis{Kirchner2019, author = {Kirchner, Eva}, title = {Discrete Supramolecular Stacks by Self-Assembly and Folding of Bis(merocyanine) Dyes}, doi = {10.25972/OPUS-15941}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-159419}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {The present thesis describes the development of a strategy to create discrete finite-sized supramolecular stacks of merocyanine dyes. Thus, bichromophoric stacks of two identical or different chromophores could be realized by folding of bis(merocyanine) dyes and their optical properties were discussed in terms of exciton theory. Quantum chemical calculations revealed strong exciton coupling between the chromophores within the homo- and hetero-π-stacks and the increase of the J-band of the hetero-dimers with increasing energy difference between the excited states of the chromophores could be attributed not only to the different magnitudes of transition dipole moments of the chromophores but also to the increased localization of the excitation in the respective exciton state. Furthermore, careful selection of the length of the spacer unit that defines the interplanar distance between the tethered chromophores directed the self-assembly of the respective bis(merocyanines) into dimers, trimers and tetramers comprising large, structurally precise π-stacks of four, six or eight merocyanine chromophores. It could be demonstrated that the structure of such large supramolecular architectures can be adequately elucidated by commonly accessible analysis tools, in particular NMR techniques in combination with UV/vis measurements and mass spectrometry. Supported by TDDFT calculations, the absorption spectra of the herein investigated aggregates could be explained and a relationship between the absorption properties and the number of stacking chromophores could be established based on exciton theory.}, subject = {Merocyanine}, language = {en} } @phdthesis{Heilos2019, author = {Heilos, Anna}, title = {Mechanistic Insights into the Inhibition of Cathepsin B and Rhodesain with Low-Molecular Inhibitors}, doi = {10.25972/OPUS-17822}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-178228}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {Cysteine proteases play a crucial role in medical chemistry concerning various fields reaching from more common ailments like cancer and hepatitis to less noted tropical diseases, namely the so-called African Sleeping Sickness (Human Arfican Trypanosomiasis). Detailed knowledge about the catalytic function of these systems is highly desirable for drug research in the respective areas. In this work, the inhibition mechanisms of the two cysteine proteases cathepsin B and rhodesain with respectively one low-molecular inhibitor class were investigated in detail, using computational methods. In order to sufficiently describe macromolecular systems, molecular mechanics based methods (MM) and quantum mechanical based method (QM), as well as hybrid methods (QM/MM) combining those two approaches, were applied. For Cathespin B, carbamate-based molecules were investigated as potential inhibitors for the cysteine protease. The results indicate, that water-bridged proton-transfer reactions play a crucial role for the inhibition. The energetically most favoured pathway (according to the calculations) includes an elimination reaction following an E1cB mechanism with a subsequent carbamylation of the active site amino acid cysteine. Nitroalkene derivatives were investigated as inhibitors for rhodesain. The investigation of structurally similar inhibitors showed, that even small steric differences can crucially influence the inhibition potential of the components. Furthermore, the impact of a fluorination of the nitroalkene inhibitors on the inhibition mechanism was investigated. According to experimental data measured from the working group of professor Schirmeister in Mainz, fluorinated nitroalkenes show - in contrast to the unfluorinated compounds - a time dependent inhibition efficiency. The calculations of the systems indicate, that the fluorination impacts the non-covalent interactions of the inhibitors with the enzymatic environment of the enzyme which results in a different inhibition behaviour.}, subject = {Cysteinproteasen}, language = {en} } @phdthesis{Herget2019, author = {Herget, Verena}, title = {A novel approach for the calibration of the hadronic recoil for the measurement of the mass of the W boson with the ATLAS Experiment}, doi = {10.25972/OPUS-17782}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-177828}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {The measurement of the mass of the \$W\$ boson is currently one of the most promising precision analyses of the Standard Model, that could ultimately reveal a hint for new physics. The mass of the \$W\$ boson is determined by comparing the \$W\$ boson, which cannot be reconstructed directly, to the \$Z\$ boson, where the full decay signature is available. With the help of Monte Carlo simulations one can extrapolate from the \$Z\$ boson to the \$W\$ boson. Technically speaking, the measurement of the \$W\$ boson mass is performed by comparing data taken by the ATLAS experiment to a set of calibrated Monte Carlo simulations, which reflect different mass hypotheses.\ A dedicated calibration of the reconstructed objects in the simulations is crucial for a high precision of the measured value. The comparison of simulated \$Z\$ boson events to reconstructed \$Z\$ boson candidates in data allows to derive event weights and scale factors for the calibration. This thesis presents a new approach to reweight the hadronic recoil in the simulations. The focus of the calibration is on the average hadronic activity visible in the mean of the scalar sum of the hadronic recoil \$\Sigma E_T\$ as a function of pileup. In contrast to the standard method, which directly reweights the scalar sum, the dependency to the transverse boson momentum is less strongly affected here. The \$\Sigma E_T\$ distribution is modeled first by means of its pileup dependency. Then, the remaining differences in the resolution of the vector sum of the hadronic recoil are scaled. This is done separately for the parallel and the pterpendicular component of the hadronic recoil with respect to the reconstructed boson. This calibration was developed for the dataset taken by the ATLAS experiment at a center of mass energy of \$8\,\textrm{TeV}\$ in 2012. In addition, the same reweighting procedure is applied to the recent dataset with a low pileup contribution, the \textit{lowMu} runs at \$5\,\textrm{TeV}\$ and at \$13\,\textrm{TeV}\$, taken by ATLAS in November 2017. The dedicated aspects of the reweighting procedure are presented in this thesis. It can be shown that this reweighting approach improves the agreement between data and the simulations effectively for all datasets. The uncertainties of this reweighting approach as well as the statistical errors are evaluated for a \$W\$ mass measurement by a template fit to pseudodata for the \textit{lowMu} dataset. A first estimate of these uncertainties is given here. For the pfoEM algorithm a statistical uncertainty of \$17\,\text{MeV}\$ for the \$5\,\textrm{TeV}\$ dataset and of \$18\,\text{MeV}\$ for the \$13\,\textrm{TeV}\$ are found for the \$W \rightarrow \mu \nu\$ analysis. The systematic uncertainty introduced by the resolution scaling has the largest effect, a value of \$15\,\text{MeV}\$ is estimated for the \$13\,\textrm{TeV}\$ dataset in the muon channel.}, subject = {Standardmodell }, language = {en} } @phdthesis{Weinhard2019, author = {Weinhard, Alexander}, title = {Managing RFID Implementations - Implications for Managerial Decision Making}, doi = {10.25972/OPUS-17816}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-178161}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {The present dissertation investigates the management of RFID implementations in retail trade. Our work contributes to this by investigating important aspects that have so far received little attention in scientific literature. We therefore perform three studies about three important aspects of managing RFID implementations. We evaluate in our first study customer acceptance of pervasive retail systems using privacy calculus theory. The results of our study reveal the most important aspects a retailer has to consider when implementing pervasive retail systems. In our second study we analyze RFID-enabled robotic inventory taking with the help of a simulation model. The results show that retailers should implement robotic inventory taking if the accuracy rates of the robots are as high as the robots' manufacturers claim. In our third and last study we evaluate the potentials of RFID data for supporting managerial decision making. We propose three novel methods in order to extract useful information from RFID data and propose a generic information extraction process. Our work is geared towards practitioners who want to improve their RFID-enabled processes and towards scientists conducting RFID-based research.}, subject = {RFID}, language = {en} } @phdthesis{Rieger2019, author = {Rieger, Max}, title = {Preconcentration with Metal-Organic Frameworks as adsorbents for airborne Explosives and Hazardous Materials - A study using inverse gas chromatography}, doi = {10.25972/OPUS-17775}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-177750}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {Sensitivity and selectivity remain the central technical requirement for analytical devices, detectors and sensors. Especially in the gas phase, concentrations of threat substances can be very low (e.g. explosives) or have severe effects on health even at low concentrations (e.g. benzene) while it contains many potential interferents. Preconcentration, facilitated by active or passive sampling of air by an adsorbent, followed by thermal desorption, results in these substances being released in a smaller volume, effectively increasing their concentration. Traditionally, a wide range of adsorbents, such as active carbons or porous polymers, are used for preconcentration. However, many adsorbents either show chemical reactions due to active surfaces, serious water retention or high background emission due to thermal instability. Metal-organic frameworks (MOFs) are a hybrid substance class, composed inorganic and organic building blocks, being a special case of coordination polymers containing pores. They can be tailored for specific applications such as gas storage, separation, catalysis, sensors or drug delivery. This thesis is focused on investigating MOFs for their use in thermal preconcentration for airborne detection systems. A pre-screening method for MOF-adsorbate interactions was developed and applied, namely inverse gas chromatography (iGC). Using this pulse chromatographic method, the interaction of MOFs and molecules from the class of explosives and volatile organic compounds was studied at different temperatures and compared to thermal desorption results. In the first part, it is shown that archetype MOFs (HKUST-1, MIL-53 and Fe-BTC) outperformed the state-of-the-art polymeric adsorbent Tenax® TA in nitromethane preconcentration for a 1000 (later 1) ppm nitromethane source. For HKUST-1, a factor of more than 2000 per g of adsorbent was achieved, about 100 times higher than for Tenax. Thereby, a nitromethane concentration of 1 ppb could be increased to 2 ppm. High enrichment is addressed to the specific interaction of the nitro group as by iGC, which was determined by comparing nitromethane's free enthalpy of adsorption with the respective saturated alkane. Also, HKUST-1 shows a similar mode of sorption (enthalpy-entropy compensation) for nitro and saturated alkanes. In the second part, benzene of 1 ppm of concentration was enriched with a similar setup, using 2nd generation MOFs, primarily UiO-66 and UiO-67, under dry and humid (50 \%rH) conditions using constant sampling times. Not any MOF within the study did surpass the polymeric Tenax in benzene preconcentration. This is most certainly due to low sampling times - while Tenax may be highly saturated after 600 s, MOFs are not. For regular UiO-66, four differently synthesized samples showed a strongly varying behavior for dry and humid enrichment which cannot be completely explained. iGC investigations with regular alkanes and BTEX compounds revealed that confinement factors and dispersive surface energy were different for all UiO-66 samples. Using physicochemical parameters from iGC, no unified hypothesis explaining all variances could be developed. Altogether, it was shown that MOFs can replace or add to state-of-the-art adsorbents for the enrichment of specific analytes with preconcentration being a universal sensitivity-boosting concept for detectors and sensors. Especially with iGC as a powerful screening tool, most suitable MOFs for the respective target analyte can be evaluated. iGC can be used for determining "single point" retention volumes, which translate into partition coefficients for a specific MOF × analyte × temperature combination.}, subject = {Metallorganisches Netzwerk}, language = {en} } @incollection{MiddelhoffSchoenbeck2019, author = {Middelhoff, Frederike and Sch{\"o}nbeck, Sebastian}, title = {Coming to Terms: The Poetics of More-than-human Worlds}, series = {Texts, Animals, Environments: Zoopoetics and Ecopoetics}, booktitle = {Texts, Animals, Environments: Zoopoetics and Ecopoetics}, publisher = {Rombach Druck- und Verlagshaus}, address = {Freiburg i. Br.}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-177783}, publisher = {Universit{\"a}t W{\"u}rzburg}, pages = {11-38}, year = {2019}, abstract = {No abstract available.}, language = {en} } @phdthesis{Pohl2019, author = {Pohl, Daniel}, title = {Universal Locally Univalent Functions and Universal Conformal Metrics}, doi = {10.25972/OPUS-17717}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-177174}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {The work at hand discusses various universality results for locally univalent and conformal metrics. In Chapter 2 several interesting approximation results are discussed. Runge-type Theorems for holomorphic and meromorphic locally univalent functions are shown. A well-known local approximation theorem for harmonic functions due to Keldysh is generalized to solutions of the curvature equation. In Chapter 3 and 4 these approximation theorems are used to establish universality results for locally univalent functions and conformal metrics. In particular locally univalent analogues for well-known universality results due Birkhoff, Seidel \& Walsh and Heins are shown.}, subject = {Schlichte Funktion}, language = {en} } @phdthesis{Dindas2019, author = {Dindas, Julian}, title = {Cytosolic Ca\(^2\)\(^+\), a master regulator of vacuolar ion conductance and fast auxin signaling in \(Arabidopsis\) \(thaliana\)}, doi = {10.25972/OPUS-15863}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-158638}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {Das Phytohormon Auxin erf{\"u}llt wichtige Funktionen bei der Initiierung von pflanzlichen Geweben und Organen, wie auch in der Steuerung des Wurzelwachstums im Zusammenspiel mit {\"a}ußeren Reizen wie Schwerkraft, Wasser- und N{\"a}hstoffverf{\"u}gbarkeit. Diese Funktionen basieren dabei vor allem auf der Auxin-abh{\"a}ngigen Regulation von Zellteilung und -streckung. Wichtig f{\"u}r letzteres ist dabei die Kontrolle des Zellturgors durch die Vakuole. Als Speicher f{\"u}r N{\"a}hrstoffe, Metabolite und Toxine sind Vakuolen von essentieller Bedeutung. Vakuol{\"a}r gespeicherte Metabolite und Ionen werden sowohl {\"u}ber aktive Transportprozesse, als auch passiv durch Ionenkan{\"a}le, {\"u}ber die vakuol{\"a}re Membran mit dem Zytoplasma ausgetauscht. In ihrer Funktion als second messenger sind Kalziumionen wichtige Regulatoren, aber auch Gegenstand vakuol{\"a}rer Transportprozesse. {\"A}nderungen der zytosolischen Kalziumkonzentration wirken nicht nur lokal, sie werden auch mit einer Signalweiterleitung {\"u}ber l{\"a}ngere Distanzen in Verbindung gebracht. Im Rahmen dieser Arbeit wurden elektrophysiologische Methoden mit bildgebenden Methoden kombiniert um Einblicke in das Zusammenspiel zwischen zytosolischen Kalziumsignalen, vakuol{\"a}rer Transportprozesse und der Auxin-Physiologie im intakten pflanzlichen Organismus zu gewinnen. Kalziumsignale sind an der Regulierung vakuol{\"a}rer Ionenkan{\"a}le und Transporter beteiligt. Um dies im intakten Organismus zu untersuchen wurden im Modellsystem junger Wurzelhaare von Arabidopsis thaliana Messungen mit intrazellul{\"a}ren Mikroelektroden durchgef{\"u}hrt. Mittels der Zwei-Elektroden-Spannungsklemm-Technik konnte best{\"a}tigt werden, dass die vakuol{\"a}re Membran der limitierende elektrische Wiederstand w{\"a}hrend intravakuol{\"a}rer Messungen ist und so gemessene Ionenstr{\"o}me in der Tat nur die Str{\"o}me {\"u}ber die vakuol{\"a}re Membran repr{\"a}sentieren. Die bereits bekannte zeitabh{\"a}ngige Abnahme der vakuol{\"a}ren Leitf{\"a}higkeit in Einstichexperimenten konnte weiterhin mit einer einstichbedingten, transienten Erh{\"o}hung der zytosolischen Kalziumkonzentration korreliert werden. Durch intravakuol{\"a}re Spannungsklemmexperimente in Wurzelhaarzellen von Kalziumreporterpflanzen konnte dieser Zusammenhang zwischen vakuol{\"a}rer Leitf{\"a}higkeit und der zytosolischen Kalziumkonzentration best{\"a}tigt werden. Die Vakuole ist jedoch nicht nur ein Empf{\"a}nger zytosolischer Kalziumsignale. Da die Vakuole den gr{\"o}ßten intrazellul{\"a}ren Kalziumspeicher darstellt, wird seit Langem diskutiert, ob sie auch an der Erzeugung solcher Signale beteiligt ist. Dies konnte in intakten Wurzelhaarzellen best{\"a}tigt werden. {\"A}nderungen des vakuol{\"a}ren Membranpotentials wirkten sich auf die zytosolische Kalziumkonzentration in diesen Zellen aus. W{\"a}hrend depolarisierende Potentiale zu einer Erh{\"o}hung der zytosolischen Kalziumkonzentration f{\"u}hrten, bewirkte eine Hyperpolarisierung der vakuol{\"a}ren Membran das Gegenteil. Thermodynamische {\"U}berlegungen zum passiven und aktiven Kalziumtransport {\"u}ber die vakuol{\"a}re Membran legten dabei den Schluss nahe, dass die hierin beschriebenen Ergebnisse das Verhalten von vakuol{\"a}ren H+/Ca2+ Austauschern wiederspiegeln, deren Aktivit{\"a}t durch die protonenmotorische Kraft bestimmt wird. Im Rahmen dieser Arbeit stellte sich weiterhin heraus, dass zytosolisches Kalzium ebenso ein zentraler Regulator eines schnellen Auxin-induzierten Signalweges ist, {\"u}ber den der polare Transport des Hormons reguliert wird. Im gleichen Modellsystem junger Wurzelhaare konnte gezeigt werden, dass die externe Applikation von Auxin eine sehr schnelle, Auxinkonzentrations- und pH-abh{\"a}ngige Depolarisation des Plasmamembranpotentials zur Folge hat. Synchron zur Depolarisation des Plasmamembranpotentials wurden im Zytosol transiente Kalziumsignale registriert. Diese wurden durch einen von Auxin aktivierten Einstrom von Kalziumionen durch den Ionenkanal CNGC14 hervorgerufen. Experimente an Verlustmutanten als auch pharmakologische Experimente zeigten, dass zur Auxin-induzierten Aktivierung des Kalziumkanals die Auxin-Perzeption durch die F-box Proteine der TIR1/AFB Familie erforderlich ist. Durch Untersuchungen der Auxin-abh{\"a}ngigen Depolarisation wie auch des Auxin-induzierten Einstroms von Protonen in epidermale Wurzelzellen von Verlustmutanten konnte gezeigt werden, dass die sekund{\"a}r aktive Aufnahme von Auxin durch das hochaffine Transportprotein AUX1 f{\"u}r die schnelle Depolarisation verantwortlich ist. Nicht nur die zytosolischen Kalziumsignale korrelierten mit der CNGC14 Funktion, sondern ebenso die AUX1-vermittelte Depolarisation von Wurzelhaaren. Eine unver{\"a}nderte Expression von AUX1 in der cngc14 Verlustmutante legte dabei den Schluss nahe, dass die Aktivit{\"a}t von AUX1 posttranslational reguliert werden muss. Diese Hypothese erfuhr Unterst{\"u}tzung durch Experimente, in denen die Behandlung mit dem Kalziumkanalblocker Lanthan zu einer Inaktivierung von AUX1 im Wildtyp f{\"u}hrte. Die zytosolische Beladung einzelner epidermaler Wurzelzellen mit Auxin hatte die Ausbreitung lateraler und acropetaler Kalziumwellen zur Folge. Diese korrelierten mit einer Verschiebung des Auxin-Gradienten an der Wurzelspitze und unterst{\"u}tzten somit eine hypothetische Kalziumabh{\"a}ngige Regulation des polaren Auxin Transports. Ein Model f{\"u}r einen schnellen, Auxin induzierten und kalziumabh{\"a}ngigen Signalweg wird pr{\"a}sentiert und dessen Bedeutung f{\"u}r das gravitrope Wurzelwachstum diskutiert. Da die AUX1-vermittelte Depolarisation in Abh{\"a}ngigkeit von der externen Phosphatkonzentration variierte, wird die Bedeutung dieses schnellen Signalwegs ebenso f{\"u}r die Anpassung des Wurzelhaarwachstums an eine nicht ausreichende Verf{\"u}gbarkeit von Phosphat diskutiert.}, subject = {Ackerschmalwand}, language = {en} } @phdthesis{Pfitzner2019, author = {Pfitzner, Christian}, title = {Visual Human Body Weight Estimation with Focus on Clinical Applications}, isbn = {978-3-945459-27-0 (online)}, doi = {10.25972/OPUS-17484}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-174842}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {It is the aim of this thesis to present a visual body weight estimation, which is suitable for medical applications. A typical scenario where the estimation of the body weight is essential, is the emergency treatment of stroke patients: In case of an ischemic stroke, the patient has to receive a body weight adapted drug, to solve a blood clot in a vessel. The accuracy of the estimated weight influences the outcome of the therapy directly. However, the treatment has to start as early as possible after the arrival at a trauma room, to provide sufficient treatment. Weighing a patient takes time, and the patient has to be moved. Furthermore, patients are often not able to communicate a value for their body weight due to their stroke symptoms. Therefore, it is state of the art that physicians guess the body weight. A patient receiving a too low dose has an increased risk that the blood clot does not dissolve and brain tissue is permanently damaged. Today, about one-third gets an insufficient dosage. In contrast to that, an overdose can cause bleedings and further complications. Physicians are aware of this issue, but a reliable alternative is missing. The thesis presents state-of-the-art principles and devices for the measurement and estimation of body weight in the context of medical applications. While scales are common and available at a hospital, the process of weighing takes too long and can hardly be integrated into the process of stroke treatment. Sensor systems and algorithms are presented in the section for related work and provide an overview of different approaches. The here presented system -- called Libra3D -- consists of a computer installed in a real trauma room, as well as visual sensors integrated into the ceiling. For the estimation of the body weight, the patient is on a stretcher which is placed in the field of view of the sensors. The three sensors -- two RGB-D and a thermal camera -- are calibrated intrinsically and extrinsically. Also, algorithms for sensor fusion are presented to align the data from all sensors which is the base for a reliable segmentation of the patient. A combination of state-of-the-art image and point cloud algorithms is used to localize the patient on the stretcher. The challenges in the scenario with the patient on the bed is the dynamic environment, including other people or medical devices in the field of view. After the successful segmentation, a set of hand-crafted features is extracted from the patient's point cloud. These features rely on geometric and statistical values and provide a robust input to a subsequent machine learning approach. The final estimation is done with a previously trained artificial neural network. The experiment section offers different configurations of the previously extracted feature vector. Additionally, the here presented approach is compared to state-of-the-art methods; the patient's own assessment, the physician's guess, and an anthropometric estimation. Besides the patient's own estimation, Libra3D outperforms all state-of-the-art estimation methods: 95 percent of all patients are estimated with a relative error of less than 10 percent to ground truth body weight. It takes only a minimal amount of time for the measurement, and the approach can easily be integrated into the treatment of stroke patients, while physicians are not hindered. Furthermore, the section for experiments demonstrates two additional applications: The extracted features can also be used to estimate the body weight of people standing, or even walking in front of a 3D camera. Also, it is possible to determine or classify the BMI of a subject on a stretcher. A potential application for this approach is the reduction of the radiation dose of patients being exposed to X-rays during a CT examination. During the time of this thesis, several data sets were recorded. These data sets contain the ground truth body weight, as well as the data from the sensors. They are available for the collaboration in the field of body weight estimation for medical applications.}, subject = {Punktwolke}, language = {en} } @phdthesis{Tscharn2019, author = {Tscharn, Robert}, title = {Innovative And Age-Inclusive Interaction Design with Image-Schematic Metaphors}, doi = {10.25972/OPUS-17576}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-175762}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {The field of human-computer interaction (HCI) strives for innovative user interfaces. Innovative and novel user interfaces are a challenge for a growing population of older users and endanger older adults to be excluded from an increasingly digital world. This is because older adults often have lower cognitive abilities and little prior experiences with technology. This thesis aims at resolving the tension between innovation and age-inclusiveness by developing user interfaces that can be used regardless of cognitive abilities and technology-dependent prior knowledge. The method of image-schematic metaphors holds promises for innovative and age-inclusive interaction design. Image-schematic metaphors represent a form of technology-independent prior knowledge. They reveal basic mental models and can be gathered in language (e.g. bank account is container from "I put money into my bank account"). Based on a discussion of previous applications of image-schematic metaphors in HCI, the present work derives three empirical research questions regarding image-schematic metaphors for innovative and age-inclusive interaction design. The first research question addresses the yet untested assumption that younger and older adults overlap in their technology-independent prior knowledge and, therefore, their usage of image-schematic metaphors. In study 1, a total of 41 participants described abstract concepts from the domains of online banking and everyday life. In study 2, ten contextual interviews were conducted. In both studies, younger and older adults showed a substantial overlap of 70\% to 75\%, indicating that also their mental models overlap substantially. The second research question addresses the applicability and potential of image-schematic metaphors for innovative design from the perspective of designers. In study 3, 18 student design teams completed an ideation process with either an affinity diagram as the industry standard, image-schematic metaphors or both methods in combination and created paper prototypes. The image-schematic metaphor method alone, but not the combination of both methods, was readily adopted and applied just as a well as the more familiar standard method. In study 4, professional interaction designers created prototypes either with or without image-schematic metaphors. In both studies, the method of image-schematic metaphors was perceived as applicable and creativity stimulating. The third research question addresses whether designs that explicitly follow image-schematic metaphors are more innovative and age-inclusive regarding differences in cognitive abilities and prior technological knowledge. In two experimental studies (study 5 and 6) involving a total of 54 younger and 53 older adults, prototypes that were designed with image-schematic metaphors were perceived as more innovative compared to those who were designed without image-schematic metaphors. Moreover, the impact of prior technological knowledge on interaction was reduced for prototypes that had been designed with image-schematic metaphors. However, participants' cognitive abilities and age still influenced the interaction significantly. The present work provides empirical as well as methodological findings that can help to promote the method of image-schematic metaphors in interaction design. As a result of these studies it can be concluded that the image-schematic metaphors are an applicable and effective method for innovative user interfaces that can be used regardless of prior technological knowledge.}, subject = {Mensch-Maschine-Kommunikation}, language = {en} } @inproceedings{OPUS4-17720, title = {Texts, Animals, Environments: Zoopoetics and Ecopoetics}, editor = {Middelhoff, Frederike and Sch{\"o}nbeck, Sebastian and Borgards, Roland and Gersdorf, Catrin}, edition = {1. Auflage}, publisher = {Rombach Druck- und Verlagshaus}, address = {Freiburg i. Br.}, issn = {978-3-7930-9928-4}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-177209}, pages = {359}, year = {2019}, abstract = {Texts, Animals, Environments. Zoopoetics and Ecopoetics probes the multiple links between ecocriticism and animal studies, assessing the relations between animals, environments and poetics. While ecocriticism usually relies on a relational approach to explore phenomena related to the environment or ecology more broadly, animal studies tends to examine individual or species-specific aspects. As a consequence, ecocriticism concentrates on ecopoetical, animal studies on zoopoetical elements and modes of representation in literature (and the arts more generally). Bringing key concepts of ecocriticism and animal studies into dialogue, the volume explores new ways of thinking about and reading texts, animals, and environments - not as separate entities but as part of the same collective.}, language = {en} } @phdthesis{Rasheed2019, author = {Rasheed, Huma}, title = {Development of simple and cost-effective High Performance Liquid Chromatography methods for quality control of essential beta-lactam antibiotics in low- and middle-income countries}, doi = {10.25972/OPUS-17721}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-177214}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {Assay and impurity profiling of the pharmaceuticals are the key routine quality control methods employed worldwide for which High Performance Liquid Chromatography (HPLC) is the most widely used technique. The ability to carry out these routine laboratory procedures in low- and middle- income countries (LMICs) need the methods to be based upon simple instruments manageable with moderate levels of personnel skill and costs involved. Simple, convenient, and cost effective reverse phase HPLC methods were developed using phosphate buffer and methanol as mobile phase with C18 column as stationary phase for the impurity profiling and assay of beta lactam antibiotics. Isocratic elution and UV detection was employed in these methods. Impurity profiling method was developed for coamoxiclav tablets and ceftriaxone bulk drug. The method for ceftriaxone included a supplementary method to quantify one of its known impurity (Impurity D of ceftriaxone). This method involved use of acetonitrile where as the two main methods were achieved on the targeted method design, described above. With the exception of impurity A of ceftriaxone, the methods developed can successfully quantify impurities to the concentration as low as ≤0.05\%, which is in accordance with the current guidelines for the impurity profiling of antibiotics issued by European Medicines Agency. As ensuring cost reduction was one of the key objectives of carrying out the method development exercise, in situ methods for the preparation of impurities were also identified and some new methods were introduced. The stability of beta lactam antibiotics and the choice of solvent were given due attention during the process of method development revealing information on the presence of new impurities. Deacetyl cefotaxime and 2-mercaptobenzathiazole were identified in this process as new impurities of ceftriaxone currently not listed under known impurities by United States Pharmacopoeia and European Pharmacopoeia. However, deacetyl cefotaxime is a known impurity of cefotaxime whereas the latter molecule is a degradation product of one of the synthesis impurities of ceftriaxone. This substance is reported to be carcinogenic and is resolved using the supplementary method developed for ceftriaxone, hence making its detection and quantification possible. A known inactive impurity of ceftriaxone (Impurity A, E-isomer of ceftriaxone) was` also shown to be produced by exposure to day light, thus warranting the light protection of the ceftriaxone solution, an information that is of critical importance in the clinical settings. A series of experimentation was carried out on the finished products of beta lactam antibiotics sampled from Pakistan and few other countries, to identify key quality issues in the samples. Though the limited sample size and convenient sampling did not provide results that could yield a decisive figure for the country status for prevalence of substandard and falsified medical products, but the experiments have clearly indicated that the problems in drug quality do exist and beta lactam antibiotics form a class of high-risk medicine with respect to surveillance for poor-quality medicines. Isolation of unknown impurities was also carried out along with the introduction of new and modified methods for preparation of impurities of beta-lactam antibiotics. In addition, detailed literature survey was carried out for understanding the complex problem of the poor-quality medicine, impact of poor quality antimicrobials on health care system and the magnitude of the problem at the global level. The country status of Pakistan regarding quality of medicines was recorded based upon the available documentary evidence. The current technologies and strategic options available for low- and middle-income countries in aiding fight for combating poor quality medicines was also laid down to design recommendations for Pakistan. A comprehensive review of the information technology tools used for identification and control of substandard and falsified medicines was also conducted.}, subject = {HPLC}, language = {en} } @phdthesis{Metter2019, author = {Metter, Christopher Valentin}, title = {Resilience, Availabilty, and Serviceability Evaluation in Software-defined Networks}, issn = {1432-8801}, doi = {10.25972/OPUS-17678}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-176788}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {With the introduction of Software-defined Networking (SDN) in the late 2000s, not only a new research field has been created, but a paradigm shift was initiated in the broad field of networking. The programmable network control by SDN is a big step, but also a stumbling block for many of the established network operators and vendors. As with any new technology the question about the maturity and the productionreadiness of it arises. Therefore, this thesis picks specific features of SDN and analyzes its performance, reliability, and availability in scenarios that can be expected in production deployments. The first SDN topic is the performance impact of application traffic in the data plane on the control plane. Second, reliability and availability concerns of SDN deployments are exemplary analyzed by evaluating the detection performance of a common SDN controller. Thirdly, the performance of P4, a technology that enhances SDN, or better its impact of certain control operations on the processing performance is evaluated.}, subject = {Leistungsbewertung}, language = {en} } @phdthesis{Weller2019, author = {Weller, Lisa}, title = {How to not act? Cognitive foundations of intentional nonactions}, doi = {10.25972/OPUS-17667}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-176678}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {Human actions are generally not determined by external stimuli, but by internal goals and by the urge to evoke desired effects in the environment. To reach these effects, humans typically have to act. But at times, deciding not to act can be better suited or even the only way to reach a desired effect. What mental processes are involved when people decide not to act to reach certain effects? From the outside it may seem that nothing remarkable is happening, because no action can be observed. However, I present three studies which disclose the cognitive processes that control nonactions. The present experiments address situations where people intentionally decide to omit certain actions in order to produce a predictable effect in the environment. These experiments are based on the ideomotor hypothesis, which suggests that bidirectional associations can be formed between actions and the resulting effects. Because of these associations, anticipating the effects can in turn activate the respective action. The results of the present experiments show that associations can be formed between nonactions (i.e., the intentional decision not to act) and the resulting effects. Due to these associations, perceiving the nonaction effects encourages not acting (Exp. 1-3). What is more, planning a nonaction seems to come with an activation of the effects that inevitably follow the nonaction (Exp. 4-5). These results suggest that the ideomotor hypothesis can be expanded to nonactions and that nonactions are cognitively represented in terms of their sensory effects. Furthermore, nonaction effects can elicit a sense of agency (Exp. 6-8). That is, even though people refrain from acting, the resulting nonaction effects are perceived as self-produced effects. In a nutshell, these findings demonstrate that intentional nonactions include specific mechanisms and processes, which are involved, for instance, in effect anticipation and the sense of agency. This means that, while it may seem that nothing remarkable is happening when people decide not to act, complex processes run on the inside, which are also involved in intentional actions.}, subject = {Intention}, language = {en} } @phdthesis{Harbrecht2019, author = {Harbrecht, Isabelle}, title = {Entering Society - The Adolescence, Identity and Development of Vocational Education Students in Shanghai}, edition = {1. Auflage}, publisher = {W{\"u}rzburg University Press}, address = {W{\"u}rzburg}, isbn = {978-3-95826-096-2}, doi = {10.25972/WUP-978-3-95826-097-9}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-168626}, school = {W{\"u}rzburg University Press}, pages = {xviii, 298}, year = {2019}, abstract = {With the late twentieth-century reform of the labour market and the abolition of the 'iron rice bowl' in China, jobs were no longer guaranteed by the government and higher education became more and more a requirement for even low-level positions. A surplus of academics and a lack of skilled workers became the long-term consequences. Since the early 2000s, the government has tried to mitigate this situation by promoting and developing vocational education. However, it is still considered to be a second class education, suitable only for weak students whose results are too low for an academic middle school. Based on the qualitative and quantitative data of a three-year panel study conducted in vocational schools in Shanghai, the present publication analyses the social environments, personalities, values and perceptions of students in vocational education - adolescents stigmatized by society. The results show how their attitudes change throughout their education, and which kinds of identities they form. Drawing on Ulrich Beck's thesis of individualization, this publication finds that adolescents in vocational education still hold on to the belief that good study results enable them to seize chances and avoid risks. Freedom of choice, feelings of success and a good relationship with parents support these positive attitudes towards learning. Family in particular turned out to not only be an important motivational factor but also the dominant value of the students. Vocational education is still, however, stigmatized and the adolescents try to bring that in line with their self-worth.}, language = {en} } @phdthesis{Wahl2019, author = {Wahl, Joachim}, title = {The Use of Ionic Liquids in Capillary Electrophoresis Enantioseparation}, doi = {10.25972/OPUS-17639}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-176397}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {Two chiral chemical molecules being mirror images of each other, also referred to as enantiomers, may have different pharmacokinetic, pharmacodynamic, and toxicological effects. Thus, pharmaceutical manufacturers and authorities are increasingly interested in the approval of enantiopure drugs. However, the isomeric purity and the limits for isomeric impurities have to be specified applying enantioselective analytical methods, such as capillary electrophoresis. The separation of enantiomers in capillary electrophoresis may be improved by the addition of ionic liquids to the background electrolyte. The aim of this work was to investigate the influence of different separation conditions on the enantioseparation of phenethylamines in background electrolytes containing ionic liquids based on tetrabutylammonium cations. Best chiral separations were achieved at acidic pH values using phosphate buffers containing 125 mmol/L tetrabutylammonium based salts. Different reasons explaining enhanced enantioseparations in buffers containing ionic liquids were found. First, due to an improvement of the cyclodextrin solubility, the addition of ionic liquids to the background electrolyte enables the use of higher concentrations of these chiral selector. Furthermore, the adsorption of tetrabutylammonium cations to the negatively charged capillary surface results in a reduction of the electroosmotic flow. Hence, the resulting prolongation of migration times leads to a longer period of time for the separation of temporarily formed diastereomeric analyte cyclodextrin complexes, which yields improved enantioseparation. Additionally, due to a decrease of the adsorption of positively charged phenethylamine analyte molecules to capillary surface silanol groups, the adsorption of ionic liquid cations inhibits peak broadening. A further reason explaining an enhanced enantioseparation by the addition of ionic liquids to the background electrolyte is a competition between tetrabutylammonium cations and analyte enantiomers for the inclusion into cyclodextrin cavities. Furthermore, the influence of different chiral counterions, combined with tetrabutylammonium cations, on the enantioseparation of phenethylamines was investigated. Solely anions based on the basic proteinogenic amino acids L lysine and L arginine yielded chiral separation results superior to those achieved using achiral tetrabutylammonium chloride as background electrolyte additive. Especially the application of tetrabutylammonium L argininate gave very good enantioseparations of all investigated ephedrine derivatives, which might be explained by the ability of L arginine to affect the formation of complexes between analytes and cyclodextrins. Besides the investigation of the influence of ionic liquids on the enantioseparation, complexes between phenethylamine enantiomers and β cyclodextrin derivatives were characterized by affinity capillary electrophoresis. The binding constants between analyte enantiomers and cyclodextrins and the electrophoretic mobilities of the temporarily formed complexes were determined and compared to the observed chiral resolution values. While neither the calculated binding constants nor their differences correlated with the quality of the enantioseparation, a strong correlation between the differences of the electrophoretic mobilities of the complexes and the chiral resolution values was found.}, subject = {Kapillarelektrophorese}, language = {en} } @phdthesis{Mekala2019, author = {Mekala, SubbaRao}, title = {Generation of cardiomyocytes from vessel wall-resident stem cells}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-146046}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {Myocardial infarction (MI) is a major cause of health problems and is among the leading deadly ending diseases. Accordingly, regenerating functional myocardial tissue and/or cardiac repair by stem cells is one of the most desired aims worldwide. Indeed, the human heart serves as an ideal target for regenerative intervention, because the capacity of the adult myocardium to restore itself after injury or infarct is limited. Thus, identifying new sources of tissue resident adult stem or progenitor cells with cardiovascular potential would help to establish more sophisticated therapies in order to either prevent cardiac failure or to achieve a functional repair. Ongoing research worldwide in this field is focusing on a) induced pluripotent stem (iPS) cells, b) embryonic stem (ES) cells and c) adult stem cells (e. g. mesenchymal stem cells) as well as cardiac fibroblasts or myofibroblasts. However, thus far, these efforts did not result in therapeutic strategies that were transferable into the clinical management of MI and heart failure. Hence, identifying endogenous and more cardiac-related sources of stem cells capable of differentiating into mature cardiomyocytes would open promising new therapeutic opportunities. The working hypothesis of this thesis is that the vascular wall serves as a niche for cardiogenic stem cells. In recent years, various groups have identified different types of progenitors or mesenchymal stem cell-like cells in the adventitia and sub-endothelial zone of the adult vessel wall, the so called vessel wall-resident stem cells (VW-SCs). Considering the fact that heart muscle tissue contains blood vessels in very high density, the physiological relevance of VW-SCs for the myocardium can as yet only be assumed. The aim of the present work is to study whether a subset of VW-SCs might have the capacity to differentiate into cardiomyocyte-like cells. This assumption was challenged using adult mouse aorta-derived cells cultivated in different media and treated with selected factors. The presented results reveal the generation of spontaneously beating cardiomyocyte-like cells using specific media conditions without any genetic manipulation. The cells reproducibly started beating at culture days 8-10. Further analyses revealed that in contrast to several publications reporting the Sca-1+ cells as cardiac progenitors the Sca-1- fraction of aortic wall-derived VW-SCs reproducibly delivered beating cells in culture. Similar to mature cardiomyocytes the beating cells developed sarcomeric structures indicated by the typical cross striated staining pattern upon immunofluorescence analysis detecting α-sarcomeric actinin (α-SRA) and electron microscopic analysis. These analyses also showed the formation of sarcoplasmic reticulum which serves as calcium store. Correspondingly, the aortic wall-derived beating cardiomyocyte-like cells (Ao-bCMs) exhibited calcium oscillations. This differentiation seems to be dependent on an inflammatory microenvironment since depletion of VW-SC-derived macrophages by treatment with clodronate liposomes in vitro stopped the generation of Ao bCMs. These locally generated F4/80+ macrophages exhibit high levels of VEGF (vascular endothelial growth factor). To a great majority, VW-SCs were found to be positive for VEGFR-2 and blocking this receptor also stopped the generation VW-SC-derived beating cells in vitro. Furthermore, the treatment of aortic wall-derived cells with the ß-receptor agonist isoproterenol or the antagonist propranolol resulted in a significant increase or decrease of beating frequency. Finally, fluorescently labeled aortic wall-derived cells were implanted into the developing chick embryo heart field where they became positive for α-SRA two days after implantation. The current data strongly suggest that VW-SCs resident in the vascular adventitia deliver both progenitors for an inflammatory microenvironment and beating cells. The present study identifies that the Sca-1- rather than Sca-1+ fraction of mouse aortic wall-derived cells harbors VW-SCs differentiating into cardiomyocyte-like cells and reveals an essential role of VW-SCs-derived inflammatory macrophages and VEGF-signaling in this process. Furthermore, this study demonstrates the cardiogenic capacity of aortic VW-SCs in vivo using a chimeric chick embryonic model.}, subject = {Herzmuskelzelle}, language = {en} } @phdthesis{Yu2019, author = {Yu, Sung-Huan}, title = {Development and application of computational tools for RNA-Seq based transcriptome annotations}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-176468}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {In order to understand the regulation of gene expression in organisms, precise genome annotation is essential. In recent years, RNA-Seq has become a potent method for generating and improving genome annotations. However, this Approach is time consuming and often inconsistently performed when done manually. In particular, the discovery of non-coding RNAs benefits strongly from the application of RNA-Seq data but requires significant amounts of expert knowledge and is labor-intensive. As a part of my doctoral study, I developed a modular tool called ANNOgesic that can detect numerous transcribed genomic features, including non-coding RNAs, based on RNA-Seq data in a precise and automatic fashion with a focus on bacterial and achaeal species. The software performs numerous analyses and generates several visualizations. It can generate annotations of high-Resolution that are hard to produce using traditional annotation tools that are based only on genome sequences. ANNOgesic can detect numerous novel genomic Features like UTR-derived small non-coding RNAs for which no other tool has been developed before. ANNOgesic is available under an open source license (ISCL) at https://github.com/Sung-Huan/ANNOgesic. My doctoral work not only includes the development of ANNOgesic but also its application to annotate the transcriptome of Staphylococcus aureus HG003 - a strain which has been a insightful model in infection biology. Despite its potential as a model, a complete genome sequence and annotations have been lacking for HG003. In order to fill this gap, the annotations of this strain, including sRNAs and their functions, were generated using ANNOgesic by analyzing differential RNA-Seq data from 14 different samples (two media conditions with seven time points), as well as RNA-Seq data generated after transcript fragmentation. ANNOgesic was also applied to annotate several bacterial and archaeal genomes, and as part of this its high performance was demonstrated. In summary, ANNOgesic is a powerful computational tool for RNA-Seq based annotations and has been successfully applied to several species.}, subject = {Genom}, language = {en} } @phdthesis{Berninger2019, author = {Berninger, Michael}, title = {Development of Novel Quinolone Amides Against the African Sleeping Sickness - A Fluorine Walk}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-176428}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {In recent years the transmission of the Human African Trypanosomiasis could be significantly reduced. The reported cases in 2016 reached a historic low level of 2184 cases and these achievements can be ascribed to intense control and surveillance programmes.118 However, most of the reported cases (>1000 in 2015) occurred in the Democratic Republic of the Congo and thus, need to be treated adequately. In particular, when the parasites have traversed the blood-brain barrier (BBB), treatment proved to be even more difficult. In addition, the number of cases always came in waves due to many reasons, e.g., development of resistances. Thus, it can be expected from experiences of the past that the number of cases will increase again. Hence, novel chemical entities are desperately needed in order to overcome the drawbacks which are associated with the current treatment options. Our drug discovery approach included an initial drug repurposing strategy combined with a phenotypic screening. S. Niedermeier found novel active compounds derived from commercial fluoroquinolones. The most promising hit compound was further developed by G. Hiltensperger resulting in the lead quinolone amide GHQ168 (IC50 = 0.047 µM). This doctoral thesis is about new insights into the SAR of the quinolone amides and the enhancement of the lead compound. Special consideration was given to the fluorine atom in the quinolone amides and how certain fluorine substitution patterns influence the antitrypanosomal activity, physicochemical properties and pharmacokinetics (i.e. 'fluorine walk'). Moreover, the ability of the compound class crossing the BBB should be investigated. This feature is inevitable necessary in order to potentially treat African sleeping sickness stage II. The Gould-Jacobs protocol was predominantly used for the synthesis of the quinolone core. Since former SAR studies mainly concentrated on the variation in positions 1, 3 and 7, quinolone scaffolds (2a-i) with diverse substitution patterns regarding positions 5, 6, 7 and 8 were synthesised in this thesis. The resulting quinolone amides were evaluated for their antitrypanosomal activity. Voluminous residues in position C-5 resulted in diminished activities (compounds 13, 16 and 18) and solely small-sized moieties were tolerated. In particular the fluorine atom in position 5 revealed beneficial trypanocidal effects as shown for compounds 6 (IC50 = 0.05 µM), 8 (IC50 = 0.04 µM), and 24 (IC50 = 0.02 µM). Furthermore, having fluorine only in position 5 of the quinolone core could considerably reduce the cytotoxic effects (CC50 >100 µM, SI = >2000 for 6). Hence, the 5-fluoro-substituted quinolone amides were considered superior to GHQ168. Regarding the C-6 position all other moieties (e.g., H in 9, OCH3 in 10, CF3 in 12) except of a fluorine atom decreased the activity against Trypanosoma brucei brucei. A double fluorination in C-6 and C-8 was not beneficial (IC50 = 0.06 µM for 7) and a single fluorine atom in C-8 even showed a negative effect (IC50 = 0.79 µM for 5). The logP value is considered a surrogate parameter for lipophlicity and thus, affecting permeability and solubility processes. In particular the fluorine atom influences the lipophilicity due to versatile effects: Lipophilicity is increased by additional fluorine atoms on aromatic rings (7, 23) and reduced by fluorine atoms at an alkyl chain (49), respectively. Additionally, the 5-fluoro-substituted quinolone amides (6, 8, and 24) could prove the contrary effect of decreasing lipophilicity when the aromatic fluorine substituent is in vicinity to a carbonyl group. For the most promising drug candidates 6, 23, and 24 the respective metabolites and the metabolic turnover were investigated by C. Erk. In comparison to GHQ168 the hydroxylation of the benzylamide was prevented by the para-fluorine atom. Hence, half-life was extended for compound 23 (t1/2 = 6.4 h) and N-desalkylation was the predominant pathway. Moreover, the respective fluorine substitution pattern of the quinolone core affected the metabolism of compound 6. The 5-fluoro-substituted quinolone amide was less prone for biotransformation (t1/2 = 7.2 h) and half-life could even be further prolonged for compound 24 (t1/2 = 7.7 h). Due to the most appropriate safety profile of compound 6, this particular drug candidate was considered for in vivo study. Its poor solubility made a direct intraperitoneal administration unfeasible. Thus, an amorphous solid dispersion of 6 was generated using the spray-drying method according to the previous protocol. Unfortunately, the required solubility for the predicted in vivo study was not achieved. Furthermore, the compound class of the quinolone amide was evaluated for its ability for brain penetration. The methanesulfonyl precursor 48 was synthesised and subsequently radiofluorinated in the group of Prof. Dr. Samnick (Department of Nuclear Medicine, University Hospital of W{\"u}rzburg). The labelled compound [18F]49 was administered to mice, and its distribution throughout the body was analysed using positron emission tomography and autoradiography, respectively. The autoradiography of the murine brains revealed medium to high concentrations of [18F]49. Therefore, the quinolone amides are generally suitable for treating Human African Trypanosomiasis stage II. A scaffold hopping approach was performed starting from the quinolone amides and concluding with the compound class of pyrazoloquinolin-3-ones. The intramolecular hydrogen bond between the sec. amide and the C-4 carbonyl moiety was replaced by a covalent bond. The two compound classes were comparable regarding the antitrypanosomal activity to some degree (IC50 = 7.9 µM (EK02) vs. 6.37 µM (53a)). However, a final evaluation of 59 was not possible due to poor solubility.}, subject = {Trypanosomiase}, language = {en} } @phdthesis{Hieke2019, author = {Hieke, Marie}, title = {Synaptic arrangements and potential communication partners of \(Drosophila's\) PDF-containing clock neurons within the accessory medulla}, doi = {10.25972/OPUS-17598}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-175988}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {Endogenous clocks regulate physiological as well as behavioral rhythms within all organisms. They are well investigated in D. melanogaster on a molecular as well as anatomical level. The neuronal clock network within the brain represents the center for rhythmic activity control. One neuronal clock subgroup, the pigment dispersing factor (PDF) neurons, stands out for its importance in regulating rhythmic behavior. These neurons express the neuropeptide PDF (pigment dispersing factor). A small neuropil at the medulla's edge, the accessory medulla (AME), is of special interest, as it has been determined as the main center for clock control. It is not only highly innervated by the PDF neurons but also by terminals of all other clock neuron subgroups. Furthermore, terminals of the photoreceptors provide light information to the AME. Many different types of neurons converge within the AME and afterward spread to their next target. Thereby the AME is supplied with information from a variety of brain regions. Among these neurons are the aminergic ones whose receptors' are expressed in the PDF neurons. The present study sheds light onto putative synaptic partners and anatomical arrangements within the neuronal clock network, especially within the AME, as such knowledge is a prerequisite to understand circadian behavior. The aminergic neurons' conspicuous vicinity to the PDF neurons suggests synaptic communication among them. Thus, based on former anatomical studies regarding this issue detailed light microscopic studies have been performed. Double immunolabellings, analyses of the spatial relation of pre- and postsynaptic sites of the individual neuron populations with respect to each other and the identification of putative synaptic partners using GRASP reenforce the hypothesis of synaptic interactions within the AME between dopaminergic/ serotonergic neurons and the PDF neurons. To shed light on the synaptic partners I performed first steps in array tomography, as it allows terrific informative analyses of fluorescent signals on an ultrastructural level. Therefore, I tested different ways of sample preparation in order to achieve and optimize fluorescent signals on 100 nm thin tissue sections and I made overlays with electron microscopic images. Furthermore, I made assumptions about synaptic modulations within the neuronal clock network via glial cells. I detected their cell bodies in close vicinity to the AME and PDFcontaining clock neurons. It has already been shown that glial cells modulate the release of PDF from s-LNvs' terminals within the dorsal brain. On an anatomical level this modulation appears to exist also within the AME, as synaptic contacts that involve PDF-positive dendritic terminals are embedded into glial fibers. Intriguingly, these postsynaptic PDF fibers are often VIIAbstract part of dyadic or even multiple-contact sites in opposite to prolonged presynaptic active zonesimplicating complex neuronal interactions within the AME. To unravel possible mechanisms of such synaptic arrangements, I tried to localize the ABC transporter White. Its presence within glial cells would indicate a recycling mechanism of transmitted amines which allows their fast re-provision. Taken together, synapses accompanied by glial cells appear to be a common arrangement within the AME to regulate circadian behavior. The complexity of mechanisms that contribute in modulation of circadian information is reflected by the complex diversity of synaptic arrangements that involves obviously several types of neuron populations}, subject = {Taufliege}, language = {en} } @phdthesis{Weber2019, author = {Weber, Manuel}, title = {Action-based quantum Monte Carlo approach to fermion-boson models}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-157643}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {This work deals with the development and application of novel quantum Monte Carlo methods to simulate fermion-boson models. Our developments are based on the path-integral formalism, where the bosonic degrees of freedom are integrated out exactly to obtain a retarded fermionic interaction. We give an overview of three methods that can be used to simulate retarded interactions. In particular, we develop a novel quantum Monte Carlo method with global directed-loop updates that solves the autocorrelation problem of previous approaches and scales linearly with system size. We demonstrate its efficiency for the Peierls transition in the Holstein model and discuss extensions to other fermion-boson models as well as spin-boson models. Furthermore, we show how with the help of generating functionals bosonic observables can be recovered directly from the Monte Carlo configurations. This includes estimators for the boson propagator, the fidelity susceptibility, and the specific heat of the Holstein model. The algorithmic developments of this work allow us to study the specific heat of the spinless Holstein model covering its entire parameter range. Its key features are explained from the single-particle spectral functions of electrons and phonons. In the adiabatic limit, the spectral properties are calculated exactly as a function of temperature using a classical Monte Carlo method and compared to results for the Su-Schrieffer-Heeger model.}, subject = {Monte-Carlo-Simulation}, language = {en} } @phdthesis{Albert2019, author = {Albert, Michael}, title = {Intelligent analysis of medical data in a generic telemedicine infrastructure}, isbn = {978-3-945459-26-3 (Online)}, doi = {10.25972/OPUS-17421}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-174213}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {Telemedicine uses telecommunication and information technology to provide health care services over spatial distances. In the upcoming demographic changes towards an older average population age, especially rural areas suffer from a decreasing doctor to patient ratio as well as a limited amount of available medical specialists in acceptable distance. These areas could benefit the most from telemedicine applications as they are known to improve access to medical services, medical expertise and can also help to mitigate critical or emergency situations. Although the possibilities of telemedicine applications exist in the entire range of healthcare, current systems focus on one specific disease while using dedicated hardware to connect the patient with the supervising telemedicine center. This thesis describes the development of a telemedical system which follows a new generic design approach. This bridges the gap of existing approaches that only tackle one specific application. The proposed system on the contrary aims at supporting as many diseases and use cases as possible by taking all the stakeholders into account at the same time. To address the usability and acceptance of the system it is designed to use standardized hardware like commercial medical sensors and smartphones for collecting medical data of the patients and transmitting them to the telemedical center. The smartphone can also act as interface to the patient for health questionnaires or feedback. The system can handle the collection and transport of medical data, analysis and visualization of the data as well as providing a real time communication with video and audio between the users. On top of the generic telemedical framework the issue of scalability is addressed by integrating a rule-based analysis tool for the medical data. Rules can be easily created by medical personnel via a visual editor and can be personalized for each patient. The rule-based analysis tool is extended by multiple options for visualization of the data, mechanisms to handle complex rules and options for performing actions like raising alarms or sending automated messages. It is sometimes hard for the medical experts to formulate their knowledge into rules and there may be information in the medical data that is not yet known. This is why a machine learning module was integrated into the system. It uses the incoming medical data of the patients to learn new rules that are then presented to the medical personnel for inspection. This is in line with European legislation where the human still needs to be in charge of such decisions. Overall, we were able to show the benefit of the generic approach by evaluating it in three completely different medical use cases derived from specific application needs: monitoring of COPD (chronic obstructive pulmonary disease) patients, support of patients performing dialysis at home and councils of intensive-care experts. In addition the system was used for a non-medical use case: monitoring and optimization of industrial machines and robots. In all of the mentioned cases, we were able to prove the robustness of the generic approach with real users of the corresponding domain. This is why we can propose this approach for future development of telemedical systems.}, subject = {Telemedizin}, language = {en} }