@phdthesis{Sengupta2011,
  author    = {Sengupta, Sanchita},
  title     = {Bio-inspired Zinc Chlorin Dye Assemblies for Supramolecular Electronics},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-66935},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2011},
  abstract  = {Chlorophylls are the most important pigments owing to their involvement in photosynthesis. They perform multiple functions that arise due to their optical and redox as well as packing properties. Semisynthetic zinc chlorins investigated in this thesis are the counterparts for the natural protein-free bacteriochlorophyll (BChl) c assemblies in light-harvesting (LH) systems in bacterial chlorosomes. The major advantage of the zinc chlorin model compounds over the native BChls lies in their facile semisynthetic accessibility from chlorophyll a (Chl a), their higher chemical stability and the possibility to influence their packing by suitable chemical modifications of peripheral side chains. Whilst the favorable excitonic properties and the suitability of ZnChl and natural BChl c dye aggregates for long distance exciton transport are well documented, charge transport properties of aggregates of semisynthetic ZnChls are hitherto unexplored. The present study involves structural elucidations of aggregates of a variety of semisynthetic zinc chlorin derivatives in solution, in solid state and on surfaces by combination of spectroscopic, crystallographic and microscopic techniques, followed by investigation of charge transport properties and conductivities of these aggregates. Chart 1 shows the different ZnChls synthesized in this work that are functionalized with hydroxy or methoxy substituents at 31 position and contain different substituents at the 172-position benzyl ester functional group. The self-assembly of these dyes is strongly dependent upon their chemical structures. While ZnChls 1a, 2a, 3, which are functionalized with 31-hydroxy group bearing dodecyl and oligoethylene glycol side chains form well-soluble rod aggregates, the corresponding 31-methoxy functionalized counterparts 1b, 2b form stacks in solution and on surfaces. These supramolecular polymers have been studied in detail in Chapter 3 by UV/Vis and circular dichroism (CD) spectroscopy and dynamic light scattering (DLS). These studies provided useful insights into the aggregation process of these two types of aggregates. Whereas 31-hydroxy functionalized ZnChl 1a self-assemble into rod aggregates via an isodesmic mechanism, corresponding stack aggregates of ZnChl 1b are formed by a cooperative nucleation-elongation pathway. Detailed electron microscopic studies such as transmission electron microscopy (TEM) and scanning transmission electron microscopy (STEM) provided unequivocal evidence for hollow tubular nanostructures of water-soluble 31-hydroxy zinc chlorin 3 aggregates for the first time. The measured tube diameter of ~ 5-6 nm of these aggregates is in excellent agreement with electron microscopy data of BChl c rod aggregates in chlorosomes (Chloroflexus aurantiacus, diameter ~ 5-6 nm) and thus complied with the tubular model postulated by Holzwarth and Schaffner... In concord with their highly organized structures, micrometer-scale one dimensionality, robust nature and efficient charge transport capabilities, these self-assembled ZnChl nanotubular, stack and liquid crystalline assemblies are highly promising for supramolecular electronic applications. Research efforts in utilizing these assemblies for (opto)electronic device fabrication, for instance, in organic field effect transistors, should thus be rewarding in the future...},
  subject      = {Supramolekulare Chemie},
  language  = {en}
}
@phdthesis{Meyer2013,
  author    = {Meyer, Sebastian},
  title     = {Model System for Correlation Phenomena in Reduced Dimensions - Gold-induced Atomic Chains on Germanium},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-77723},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2013},
  abstract  = {Atomic chains, often called nanowires, form in a self-organized process after the adsorption of metal atoms. These wires are spatially well confined representing a close approach of a true one-dimensional structure. The low-dimensional architecture thereby often leads to anisotropic electronic states with vanishing interchain interaction. In the presence of weak coupling to the substrate a one-dimensional metal can experience a phase transition according to Peierls into an insulating ground state upon temperature, which is accompanied by a periodic lattice distortion. Without any coupling a strict onedimensional regime is reached, where the common Fermi liquid description breaks down with the quasi-particles being replaced by collective excitations of spin and charge. This state is referred to as a Tomonaga-Luttinger liquid (TLL), which has been observed so far only in anisotropic bulk materials. An experimental fingerprint for both phenomena can be obtained from the electronic states close to the chemical potential, i.e. the Fermi energy. Using a semiconducting substrate provides the best observation conditions since any bulk projection onto the interesting bands is avoided. In case of Au/Ge(001) the growth of gold-induced chains is guided by the dimerized bare Ge (2×1) reconstruction yielding two different domains of wires rotated by 90° going from one terrace to the next by a single height step. The superior wetting capabilities of gold on germanium enables a complete coverage of the Ge(001) surface with longrange ordered wires. Their length scale and defect density is limited by the underlying substrate, for which a cleaning procedure is introduced based on wet-chemical etching followed by thermal dry oxidation. The band structure of Au/Ge(001) is investigated by angle-resolved photoelectron spectroscopy as a function of temperature. Two states are observed: a two-dimensional metallic state with hole-like dispersion and a one-dimensional electron pocket, whose band-integrated spectral function does not show the typical Fermi distribution at the chemical potential. Instead, a decrease of spectral weight applies following a power-law. This behavior can be well explained within the Tomonaga-Luttinger liquid theory which replaces the Fermi-Landau formalism in strictly one-dimensional systems. To enable theoretical modeling, a structural analysis was performed on the basis of surface x-ray diffraction (SXRD). From the in-plane scattering data a Patterson-map could be extracted leading to in-plane distances between gold atoms in the unit cell. This provides the first step towards a complete structural model and therefore towards a band structure calculation. First successful attempts have been made to manipulate the system by controlled adsorption of potassium. Here, an n-type doping effect is observed for submonolayer coverage whereas slightly increased coverages in combination with thermal energy lead to a new surface reconstruction.},
  subject      = {Nanodraht},
  language  = {en}
}
@phdthesis{Dhara2017,
  author    = {Dhara, Ayan},
  title     = {Stimuli-Responsive Self-Assembly and Spatial Functionalization of Organic Cages Based on Tribenzotriquinacenes},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-154762},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2017},
  abstract  = {Within this thesis, synthetic strategies for self-assembled organic cage compounds have been developed that allow for both stimuli-responsive control over assembly/disassembly processes and spatial control over functionalization. To purposefully operate the reversible assembly of organic cages, boron-nitrogen dative bonds have been exploited for the formation of a well-defined, discrete bipyramidal organic assembly in solution. Thermodynamic association equilibria for cage formation have been investigated by Isothermal Titration Calorimetry (ITC). Temperature-dependent NMR studies revealed a reversible cage opening upon heating and quantitative reassembly upon cooling. For the spatial functionalization of organic cages, two divergent molecular building units have been designed and synthesized, namely tribenzotriquinacene derivatives possessing a terminal alkyne moiety at the apical position and a meta-diboronic acid having a pyridyl group at the 2-position. Facile access to a variety of apically functionalized tribenzotriquinacenes has been illustrated by post-synthetic modifications at the terminal alkyne group by Sonogashira cross-coupling and azide-alkyne click reactions. Finally, these apically functionalized tribenzotriquinacene building blocks have been implemented into boronate ester-based organic cage compounds showing modular exohedral functionalities.},
  subject      = {Selbstorganisation},
  language  = {en}
}
@phdthesis{Kirchner2019,
  author    = {Kirchner, Eva},
  title     = {Discrete Supramolecular Stacks by Self-Assembly and Folding of Bis(merocyanine) Dyes},
  doi       = {10.25972/OPUS-15941},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-159419},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2019},
  abstract  = {The present thesis describes the development of a strategy to create discrete finite-sized supramolecular stacks of merocyanine dyes. Thus, bichromophoric stacks of two identical or different chromophores could be realized by folding of bis(merocyanine) dyes and their optical properties were discussed in terms of exciton theory. Quantum chemical calculations revealed strong exciton coupling between the chromophores within the homo- and hetero-π-stacks and the increase of the J-band of the hetero-dimers with increasing energy difference between the excited states of the chromophores could be attributed not only to the different magnitudes of transition dipole moments of the chromophores but also to the increased localization of the excitation in the respective exciton state. Furthermore, careful selection of the length of the spacer unit that defines the interplanar distance between the tethered chromophores directed the self-assembly of the respective bis(merocyanines) into dimers, trimers and tetramers comprising large, structurally precise π-stacks of four, six or eight merocyanine chromophores. It could be demonstrated that the structure of such large supramolecular architectures can be adequately elucidated by commonly accessible analysis tools, in particular NMR techniques in combination with UV/vis measurements and mass spectrometry. Supported by TDDFT calculations, the absorption spectra of the herein investigated aggregates could be explained and a relationship between the absorption properties and the number of stacking chromophores could be established based on exciton theory.},
  subject      = {Merocyanine},
  language  = {en}
}
@phdthesis{PeethambaranNairSyamala2021,
  author    = {Peethambaran Nair Syamala, Pradeep},
  title     = {Bolaamphiphilic Rylene Bisimides: Thermodynamics of Self-assembly and Stimuli-responsive Properties in Water},
  doi       = {10.25972/OPUS-21342},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-213424},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2021},
  abstract  = {The present thesis demonstrates how different thermodynamic aspects of self-assembly and stimuli-responsive properties in water can be encoded on the structure of π-amphiphiles, consisting of perylene or naphthalene bisimide cores. Initially, quantitative thermodynamic insights into the entropically-driven self-assembly was studied for a series of naphthalene bisimides with UV/Vis and ITC measurements, which demonstrated that their thermodynamic profile of aggregation is heavily influenced by the OEG side chains. Subsequently, a control over the bifurcated thermal response of entropically driven and commonly observed enthalpically driven self-assembly was achieved by the modulation of glycol chain orientation. Finally, Lower Critical Solution Temperature (LCST) phenomenon observed for these dyes was investigated as a precise control of this behavior is quintessential for self-assembly studies as well as to generate 'smart' materials. It could be shown that the onset of phase separation for these molecules can be encoded in their imide substituents, and they are primarily determined by the supramolecular packing, rather than the hydrophobicity of individual monomers.},
  subject      = {Supramolekulare Chemie},
  language  = {en}
}
@phdthesis{Shen2021,
  author    = {Shen, Chia-An},
  title     = {Dicyanomethylene Squaraines: Aggregation and G-Quadruplex Complexation},
  doi       = {10.25972/OPUS-24359},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-243599},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2021},
  abstract  = {Squaraine dyes have attracted more attention in the past decade due to their strong and narrow absorption and fluorescence along with the easily functionalized molecular structure. One successful approach of core functionalization is to replace one oxygen of the squaric carbonyl group with a dicyanomethylene group, which shifts the absorption and emission into the near infrared (NIR) region and at the same time leads to a rigid, planar structure with C2v symmetry. However, such squaraines tend to aggregate cofacially in solution due to dispersion forces and dipole-dipole interactions, usually leading to H-type exciton coupling with undesired blue-shifted spectrum and quenched fluorescence. Therefore, the goal of my research was the design of dicyanomethylene-substituted squaraine dyes that self-assemble into extended aggregates in solution with J-type coupling, in order to retain or even enhance their outstanding optical properties. Toward this goal, bis(squaraine) dyes were envisioned with two squaraine units covalently linked to trigger a slip-stacked packing motif within the aggregates to enable J-type coupling. In my first project, bis(squaraine) dye BisSQ1 was synthesized, in which two dicyanomethylene squaraine chromophores are covalently linked. Concentration and temperature-dependent UV/Vis/NIR spectroscopy experiments reveal that BisSQ1 undergoes cooperative self-assembly resulting in J-type aggregates in a solvent mixture of toluene/1,1,2,2-tetrachloroethane (TCE) (98:2, v/v). The J type exciton coupling is evident from the significantly red shifted absorption maximum at 886 nm and the fluorescence peak at 904 nm. In conclusion, this was a first example to direct squaraine dye aggregation in solution to the more desired slip-stacked packing leading to J-type exciton coupling by simply connecting two dyes in a head-to-tail bis chromophore structure. Connecting two squaraine dyes with an additional phenylene spacer (BisSQ2) leads to two different polymorphs with very distinct absorption spectra upon cooling down a solution of BisSQ2 in a solvent mixture of toluene/TCE (98:2, v/v) with different rates. Accordingly, rapid cooling resulted in rigid helical nanorods with an absorption spectrum showing a panchromatic feature, while slow cooling led to a sheet-like structure with a significant bathochromic shift in the absorption spectrum. It was discovered that the conventional molecular exciton model failed to explain the panchromatic absorption features of the nanorods for the given packing arrangement, therefore more profound theoretical investigations based on the Essential States Model (ESM) were applied to unveil the importance of intermolecular charge transfer (ICT) to adequately describe the panchromatic absorption spectrum. Moreover, the red-shift observed in the spectrum for the sheet-like structure can be assigned to the interplay of Coulomb coupling and ICT-mediated coupling. Furthermore, the same bis-chromophore strategy was adopted for constructing an NIR-II emitter with a bathochromically-shifted spectrum. In chloroform, BisSQ3 exhibits an absorption maximum at 961 nm with a significant bathochromic shift (1020 cm-1) compared to the reference mono-squaraine SQ, indicating intramolecular J-type coupling via head-to-tail arrangement of two squaraine dyes. Moreover, BisSQ3 shows a fluorescence peak at 971 nm with a decent quantum yield of 0.33\%. In less polar toluene, BisSQ3 self-assembles into nanofibers with additional intermolecular J-type coupling, causing a pronounced bathochromic shift with absorption maximum at 1095 nm and a fluorescence peak at 1116 nm. Thus, connecting two quinoline-based squaraines in a head-to-tail fashion leads to not only intra-, but also intermolecular J-type exciton coupling, which serves as a promising strategy to shift the absorption and emission of organic fluorophores into the NIR-II window while retaining decent quantum yields. In conclusion, my research illustrates based on squaraine dyes how a simple modification of the molecular structure can significantly affect the aggregation behavior and further alter the optical properties of dye aggregates. Elongated supramolecular structures based on dicyanomethylene substituted squaraine dyes were successfully established by covalently linking two squaraine units to form a bis-chromophore structure. Then, a simple but efficient general approach was established to direct squaraine dye aggregation in solution to the more desired slip-stacked packing leading to J-type exciton coupling by directly connecting two squaraine dyes in a head-to-tail fashion without spacer units. Moreover, the additional spacer between the squaraine dyes in BisSQ2 allowed different molecular conformations, which leads to two different morphologies depending on the cooling rates for a hot solution. Hence, this is a promising strategy to realize supramolecular polymorphism. In general, it is expected that the concept of constructing J-aggregates by the bis-chromophore approach can be extended to entirely different classes of dyes since J-aggregates possess a variety of features such as spectral shifts into the NIR window, fluorescence enhancement, and light harvesting, which are commonly observed and utilized for numerous fundamental studies and applications. Moreover, the insights on short-range charge transfer coupling for squaraine dyes is considered of relevance for all materials based on alternating donor-acceptor π-systems. The panchromatic spectral feature is in particular crucial for acceptor-donor-acceptor (ADA) dyes, which are currently considered as very promising materials for the development of bulk heterojunction solar cells.},
  subject      = {Squaraine},
  language  = {en}
}