@phdthesis{Neveling2007, author = {Neveling, Kornelia}, title = {Molecular causes and consequences of genetic instability with respect to the FA/BRCA Caretaker Pathway}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-27383}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2007}, abstract = {In the context of this thesis, I investigated the molecular causes and functional consequences of genetic instability using a human inherited disease, Fanconi anemia. FA patients display a highly variable clinical phenotype, including congenital abnormalities, progressive bone marrow failure and a high cancer risk. The FA cellular phenotype is characterized by spontaneous and inducible chromosomal instability, and a typical S/G2 phase arrest after exposure to DNA-damaging agents. So far, 13 genes have been identified, whose biallelic (or, in the case of X-linked FANCB, hemizygous) mutations cause this multisystem disorder. The FA proteins interact in a multiprotein network, instrumental and essential in the cellular response to DNA damage. A more comprehensive summary of Fanconi anemia and its myriad clinical, cellular and molecular manifestations is provided in the introduction section of this thesis. The results of my experimental work are presented as published papers and manuscripts ready to be submitted. In the first publication, I investigated the connection between FA genes and bladder tumors. The question I tried to answer was whether a disruption of the FA/BRCA pathway may be a frequent and possibly causal event in bladder cancer, explaining the hypersensitivity of these cells to DNA-crosslinking agents. On the basis of my experimental data I arrived at the conclusion that disruption of the FA/BRCA pathway might be detrimental rather than advantageous for the majority tumor types by rendering them vulnerable towards DNA damaging agents and oxidative stress. The second publication deals with the gene coding for the core complex protein FANCE and tries to answer the question why FANCE is so rarely affected among FA-patients. The conclusion from these studies is that like FANCF, FANCE functions as a probable adaptor protein with a high tolerance towards amino acid substitutions which would explain the relative rareness of FA-E patients. I have also investigated the FANCL gene whose product functions as the catalytic subunit of the E3 ligase. The third publication addresses this issue by providing the first comprehensive description of genetic alterations and phenotypic manifestations in a series of three FA-L patients. The results of my study show that genetic alterations of FANCL are compatible with survival, these alterations may include large deletions such as so far common only in the FANCA gene, FA-L phenotypes can be mild to severe, and FANCL belongs to the group of FA genes that may undergo somatic reversion. The central protein of the FA/BRCA network, FANCD2, is the subject of the fourth publication presented in this thesis. Most importantly, we were able to show that there are no biallelic null mutations in FANCD2. Correspondingly, residual protein of both FANCD2-isotypes (FANCD2-S and FANCD2-L) was present in all available patient cell lines. This suggests that complete abrogation of the FANCD2 protein cannot be tolerated and causes early embryonic lethality. There are at least three FA proteins that are not required for the posttranslational modification of FANCD2. One of these proteins is the 5'-3' helicase BRIP1 (BRCA1-interacting protein 1), a protein that interacts directly with the breast cancer susceptibility protein BRCA1. I participated in the identification of BRIP1 as the FA protein FANCJ. This discovery is described in the fifth publication of this thesis. The newly discovered protein BRIP1/FANCJ seems to act as one of the mediators of genomic maintenance downstream of FANCD2. Another protein identified downstream of FANCD2 is PALB2. PALB2 was originally discovered as "partner and localizer of BRCA2". In a candidate gene approach we tested patients with early childhood cancers but without mutations in BRCA2 for mutations in PALB2 (publication 6). PALB2 was identified as a novel FA gene and designated FANCN. FA-N patients are very severely affected. The last publication included in my thesis describes the identification of the FA gene FANCI as the second monoubiquitinated member of the FA/BRCA pathway (publication 7). We identified biallelic mutations in KIAA1794 in four FA patients, thus proving the genuine FA-nature of this candidate sequence. The general discussion provides a synopsis of the results and conclusions of my work with the state of art of FA research.}, subject = {Fanconi-An{\"a}mie}, language = {en} } @article{HeisswolfUlmannObermaieretal.2007, author = {Heisswolf, Annette and Ulmann, Sandra and Obermaier, Elisabeth and Mitesser, Oliver and Poethke, Hans J.}, title = {Host plant finding in the specialised leaf beetle Cassida canaliculata: an analysis of small-scale movement behaviour}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-49485}, year = {2007}, abstract = {1. Host plant finding in walking herbivorous beetles is still poorly understood. Analysis of small-scale movement patterns under semi-natural conditions can be a useful tool to detect behavioural responses towards host plant cues. 2. In this study, the small-scale movement behaviour of the monophagous leaf beetle Cassida canaliculata Laich. (Coleoptera: Chrysomelidae) was studied in a semi-natural arena (r = 1 m). In three different settings, a host (Salvia pratensis L., Lamiales: Lamiaceae), a non-host (Rumex conglomeratus Murr., Caryophyllales: Polygonaceae), or no plant was presented in the centre of the arena. 3. The beetles showed no differences in the absolute movement variables, straightness and mean walking speed, between the three settings. However, the relative movement variables, mean distance to the centre and mean angular deviation from walking straight to the centre, were significantly smaller when a host plant was offered. Likewise, the angular deviation from walking straight to the centre tended to decline with decreasing distance from the centre. Finally, significantly more beetles were found on the host than on the non-host at the end of all the trials. 4. It is concluded that C. canaliculata is able to recognise its host plant from a distance. Whether olfactory or visual cues (or a combination of both) are used to find the host plant remains to be elucidated by further studies.}, subject = {K{\"a}fer}, language = {en} } @article{HeisswolfGablerObermaieretal.2007, author = {Heisswolf, Annette and Gabler, Dirk and Obermaier, Elisabeth and M{\"u}ller, Caroline}, title = {Olfactory versus contact cues in host plant recognition of a monophagous chrysomelid beetle}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-49475}, year = {2007}, abstract = {The importance of olfactory versus contact cues for host plant recognition was investigated in the tortoise beetle Cassida canaliculata Laich. (Coleoptera: Chrysomelidae), which is strictly monophagous on meadow sage. The reaction of adult beetles to olfactory and contact host cues was tested using three bioassays (locomotion compensator, six-chamber-olfactometer, stem arena') to account for different behavioral contexts. Bioassay-guided fractionation of plant extracts was elaborated to characterize the nature of contact stimuli. The beetles were only slightly attracted to odors from small amounts of leaf material. However, when contact cues were provided additionally, the beetles showed strong preferences for samples of their host plant over controls. Bioassay-guided fractionation led to isolation of at least two non-polar contact stimuli acting in concert that are sufficient for host plant identification in C. canaliculata.}, subject = {Insekt}, language = {en} } @article{HovestadtMitesserElmesetal.2007, author = {Hovestadt, Thomas and Mitesser, Oliver and Elmes, Graham and Thomas, Jeremy A. and Hochberg, Michael E.}, title = {An Evolutionarily Stable Strategy model for the evolution of dimorphic development in the butterfly Maculinea rebeli, a social parasite of Myrmica Ant Colonies}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-48165}, year = {2007}, abstract = {Caterpillars of the butterfly Maculinea rebeli develop as parasites inside ant colonies. In intensively studied French populations, about 25\% of caterpillars mature within 1 year (fast-developing larvae [FDL]) and the others after 2 years (slow-developing larvae [SDL]); all available evidence indicates that this ratio is under the control of egg-laying females. We present an analytical model to predict the evolutionarily stable fraction of FDL (pESS). The model accounts for added winter mortality of SDL, general and kin competition among caterpillars, a competitive advantage of SDL over newly entering FDL (priority effect), and the avoidance of renewed infection of ant nests by butterflies in the coming season (segregation). We come to the following conclusions: (1) all factors listed above can promote the evolution of delayed development; (2) kin competition and segregation stabilize pESS near 0.5; and (3) a priority effect is the only mechanism potentially selecting for. However, given the empirical data, pESS is predicted to fall closer to 0.5 than to the 0.25 that has been observed. In this particular system, bet hedging cannot explain why more than 50\% of larvae postpone growth. Presumably, other fitness benefits for SDL, for example, higher fertility or longevity, also contribute to the evolution of delayed development. The model presented here may be of general applicability for systems where maturing individuals compete in small subgroups.}, language = {en} } @article{PoethkePfenningHovestadt2007, author = {Poethke, Hans J. and Pfenning, Brenda and Hovestadt, Thomas}, title = {The relative contribution of individual and kin selection to the evolution of density-dependent dispersal rates}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-48225}, year = {2007}, abstract = {Questions: What are the relative contributions of kin selection and individual selection to the evolution of dispersal rates in fragmented landscapes? How do environmental parameters influence the relative contributions of both evolutionary forces? Features of the model: Individual-based simulation model of a metapopulation. Logistic local growth dynamics and density-dependent dispersal. An optional shuffling algorithm allows the continuous destruction of any genetic structure in the metapopulation. Ranges of key variables: Depending on dispersal mortality (0.05-0.4) and the strength of environmental fluctuations, mean dispersal probability varied between 0.05 and 0.5. Conclusions: For local population sizes of 100 individuals, kin selection alone could account for dispersal probabilities of up to 0.1. It may result in a ten-fold increase of optimal dispersal rates compared with those predicted on the basis of individual selection alone. Such a substantial contribution of kin selection to dispersal is restricted to cases where the overall dispersal probabilities are small (textless 0.1). In the latter case, as much as 30\% of the total fitness of dispersing individuals could arise from the increased reproduction of kin left in the natal patch.}, language = {en} } @article{MitesserWeisselStrohmetal.2007, author = {Mitesser, Oliver and Weissel, Norbert and Strohm, Erhard and Poethke, Hans-Joachim}, title = {Adaptive dynamic resource allocation in annual eusocial insects: Environmental variation will not necessarily promote graded control}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-45412}, year = {2007}, abstract = {Background: According to the classical model of Macevicz and Oster, annual eusocial insects should show a clear dichotomous "bang-bang" strategy of resource allocation; colony fitness is maximised when a period of pure colony growth (exclusive production of workers) is followed by a single reproductive period characterised by the exclusive production of sexuals. However, in several species graded investment strategies with a simultaneous production of workers and sexuals have been observed. Such deviations from the "bang-bang" strategy are usually interpreted as an adaptive (bet-hedging) response to environmental fluctuations such as variation in season length or food availability. To generate predictions about the optimal investment pattern of insect colonies in fluctuating environments, we slightly modified Macevicz and Oster's classical model of annual colony dynamics and used a dynamic programming approach nested into a recurrence procedure for the solution of the stochastic optimal control problem. Results: 1) The optimal switching time between pure colony growth and the exclusive production of sexuals decreases with increasing environmental variance. 2) Yet, for reasonable levels of environmental fluctuations no deviation from the typical bang-bang strategy is predicted. 3) Model calculations for the halictid bee Lasioglossum malachurum reveal that bet-hedging is not likely to be the reason for the graded allocation into sexuals versus workers observed in this species. 4) When environmental variance reaches a critical level our model predicts an abrupt change from dichotomous behaviour to graded allocation strategies, but the transition between colony growth and production of sexuals is not necessarily monotonic. Both, the critical level of environmental variance as well as the characteristic pattern of resource allocation strongly depend on the type of function used to describe environmental fluctuations. Conclusion: Up to now bet-hedging as an evolutionary response to variation in season length has been the main argument to explain field observations of graded resource allocation in annual eusocial insect species. However, our model shows that the effect of moderate fluctuations of environmental conditions does not select for deviation from the classical bang-bang strategy and that the evolution of graded allocation strategies can be triggered only by extreme fluctuations. Detailed quantitative observations on resource allocation in eusocial insects are needed to analyse the relevance of alternative explanations, e.g. logistic colony growth or reproductive conflict between queen and workers, for the evolution of graded allocation strategies.}, subject = {Insekten}, language = {en} } @article{Rostas2007, author = {Rost{\´a}s, Michael}, title = {The effects of 2,4-dihydroxy-7-methoxy-1,4-benzoxazin-3-one on two species of Spodoptera and the growth of Setosphaeria turcica in vitro}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-35079}, year = {2007}, abstract = {Maize seedlings contain high amounts of glucosidically bound 2,4-dihydroxy-7-methoxy-1,4-benzoxazin-3-one (DIMBOA). The effects of DIMBOA on the feeding behaviour and performance of two noctuids, Spodoptera exigua H{\"u}bner and S. frugiperda Smith, were compared. The question was raised whether S. frugiperda, preferring maize and other Poaceae, is better adapted to DIMBOA than S. exigua. In addition, the effects of DIMBOA on the mycelial growth of the plant pathogen Setosphaeria turcica Leonard et Suggs (causal agent of northern corn leaf blight) was assessed in vitro. DIMBOA had an antifeedant effect on S. exigua but stimulated feeding in S. frugiperda in dual-choice experiments. In a no-choice setup, larvae of S. exigua gained less biomass and had a prolonged development when feeding on an artificial diet containing DIMBOA. However, pupal weight was not significantly different between treatments. In contrast, larvae of S. frugiperda were not affected by DIMBOA. Strong detrimental effects of DIMBOA were found on the mycelial growth of the pathogen S. turcica.}, subject = {Eulen }, language = {en} } @unpublished{Dandekar2007, author = {Dandekar, Thomas}, title = {Some general system properties of a living observer and the environment he explores}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-33537}, year = {2007}, abstract = {In a nice assay published in Nature in 1993 the physicist Richard God III started from a human observer and made a number of witty conclusions about our future prospects giving estimates for the existence of the Berlin Wall, the human race and all the rest of the universe. In the same spirit, we derive implications for "the meaning of life, the universe and all the rest" from few principles. Adams´ absurd answer "42" tells the lesson "garbage in / garbage out" - or suggests that the question is non calculable. We show that experience of "meaning" and to decide fundamental questions which can not be decided by formal systems imply central properties of life: Ever higher levels of internal representation of the world and an escalating tendency to become more complex. An observer, "collecting observations" and three measures for complexity are examined. A theory on living systems is derived focussing on their internal representation of information. Living systems are more complex than Kolmogorov complexity ("life is NOT simple") and overcome decision limits (G{\"o}del theorem) for formal systems as illustrated for cell cycle. Only a world with very fine tuned environments allows life. Such a world is itself rather complex and hence excessive large in its space of different states - a living observer has thus a high probability to reside in a complex and fine tuned universe.}, subject = {Komplex }, language = {en} } @phdthesis{Mahapatra2007, author = {Mahapatra, Suddhasatta}, title = {Formation and Properties of Epitaxial CdSe/ZnSe Quantum Dots : Conventional Molecular Beam Epitaxy and Related Techniques}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-32831}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2007}, abstract = {Albeit of high technological import, epitaxial self-assembly of CdSe/ZnSe QDs is non-trivial and still not clearly understood. The origin and attributes of these QDs are significantly different from those of their III-V and group-IV counterparts. For III-V and group-IV heterosystems, QD-formation is assigned to the Stranski Krastanow (SK) transition, wherein elastic relaxation of misfit strain leads to the formation of coherent three-dimensional (3D) islands, from a supercritically strained two-dimensional (2D) epilayer. Unfortunately, this phenomenon is inconspicuous for the CdSe/ZnSe heterosystem. Well-defined 3D islands are not readily formed in conventional molecular beam epitaxial (MBE) growth of CdSe on ZnSe. Consequently, several alternative approaches have been adopted to induce/enhance formation of QDs. This thesis systematically investigates three such alternative approaches, along with conventional MBE, with emphasis on the formation-mechanism of QDs, and optimization of their morphological and optical attributes. It is shown here that no distinct 3D islands are formed in MBE growth of CdSe on ZnSe. The surface of the CdSe layer represents a rough 2D layer, characterized by a dense array of shallow (<1nm) abutting mounds. In capped samples, the CdSe deposit forms an inhomogeneous CdZnSe quantum well (QW)-like structure. This ternary QW consists of local Cd-rich inclusions, which confine excitons three-dimensionally, and act as QDs. The density of such QDs is very high (~ 1012 cm-2). The QDs defined by the composition inhomogeneities of the CdZnSe QW presumably originate from the shallow mounds of the uncapped CdSe surface. By a technique wherein a CdSe layer is grown at a low temperature (TG = 230 °C) and subsequently annealed at a significantly higher temperature (TA =310 °C), tiny but distinct 3D islands are formed. In this work, the mechanism underlying the formation of these islands is reported. While the CdSe deposit forms a quasi-two-dimensional (quasi-2D) layer at TG = 230 °C, subsequent annealing at TA = 310 °C results in a thermally activated "up-climb" of adatoms onto two-dimensional clusters (or precursors) and concomitant nucleation of 3D islands. The areal density of QDs, achieved by this technique, is at least a decade lower than that typical for conventional MBE growth. It is demonstrated that further reduction is possible by delaying the temperature ramp-up to TA. In the second technique, formation of distinct islands is demonstrated by deposition of amorphous selenium (a-Se) onto a 2D CdSe epilayer at room temperature and its subsequent desorption at a higher temperature (TD = 230 °C). Albeit the self-assembled islands are large, they are severely truncated during subsequent capping with ZnSe, presumably due to segregation of Cd and Zn-alloying of the islands. The segregation phenomenon is analyzed in this work and correlated to the optical properties of the QDs. Additionally, very distinct vertical correlation of QDs in QD-superlattices, wherein the first QD-layer is grown by this technique and the subsequent ones by migration enhanced epitaxy (MEE), is reported. The process steps of the third variant technique, developed in course of this work, are very similar to those of the previous one-the only alteration being the substitution of selenium with tellurium as the cap-forming-material. This leads not only to large alteration of the morphological and optical attributes of the QDs, but also to formation of unique self-assembled island-patterns. Oriented dashes, straight and buckled chains of islands, and aligned island-pairs are formed, depending on the thickness of the Te-cap layer. The islands are partially alloyed with Te and emit luminescence at very low energies (down to 1.7 eV at room temperature). The Te cap layer undergoes (poly)crystallization during temperature ramp-up (from room temperature to TD) for desorption. Here, it is shown that the self-assembled patterns of the island-ensembles are determined by the pattern of the grain boundaries of the polycrystalline Te layer. Based on an understanding of the mechanism of pattern formation, a simple and "clean" method for controlled positioning of individual QDs and QD-based extended nanostructures, is proposed in this work. The studies carried out in the framework of this thesis provide not only a deeper insight into the microscopic processes governing the heteroepitaxial self-assembly of CdSe/ZnSe(001) QDs, but also concrete approaches to achieve, optimize, and control several technologically-important features of QD-ensembles. Reduction and control of QD-areal-density, pronounced vertical correlation of distinctly-defined QDs in QD-superlattices, and self-assembly of QD-based extended structures, as demonstrated in this work, might turn out to be beneficial for envisioned applications in information-, and communication-technologies.}, subject = {Nanostruktur}, language = {en} } @phdthesis{vonSaintAndrevonArnim2007, author = {von Saint Andr{\´e} - von Arnim, Am{\´e}lie}, title = {The Role of Endosymbiotic Wolbachia Bacteria in the Pathogenesis of River Blindness}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-31560}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2007}, abstract = {Introduction: This study investigates the role of Wolbachia bacteria in the pathogenesis of O. volvulus keratitis in a mouse model. Wolbachia bacteria are essential symbionts of most filarial nematodes of importance for mankind. Methods: Using a mouse model for river blindness in which soluble extracts of filarial nematodes are injected in the corneal stroma, changes in stromal thickness and haze of the cornea are observed by in vivo confocal microscopy, followed by immunohistochemical staining for neutrophils and PECAM-1, as well as ELISA of corneal chemokines. Reactions to filarial extracts containing Wolbachia are compared to those without the endosymbiont. Results: The approach of characterizing Wolbachia's role in river blindness in this study is threefold. Firstly, Wolbachia-depleted extracts from doxycycline treated onchocerciasis patients led to a diminished inflammatory response in corneas of C57BL/6 mice compared to untreated, i.e. Wolbachia containing antigen. The decreased cell recruitment observed with doxycycline treated extracts involved neutrophils, but not eosinophils. This finding demonstrated that the presence of Wolbachia increases neutrophil recruitment. Secondly, extracts from Wolbachia-containing B. malayi revealed markedly more pathology than endosymbiont-free A. viteae antigen. This again pointed at the role of Wolbachia in development of disease. Thirdly, Toll-like Receptor 4 (TLR4) dependence was shown to exist for the inflammatory response to Wolbachia harboring O. volvulus antigen by looking at the corneal pathology in TLR4-mutant C3H/HeJ mice, compared to the wild-type C3H/HeN strain. Investigating further Wolbachia mediated mechanisms of neutrophil recruitment to the cornea, this study also showed that expression of the adhesion molecule PECAM-1 in limbal vessels, as well as upregulation of the CXC chemokines KC and MIP-2 were dependent on the presence of functional TLR4 and Wolbachia respectively. Conclusions: This study indicates that the innate immune system and Wolbachia endobacteria play an important role in the inflammatory response associated with the pathogenesis of onchocerca keratitis, suggesting a complete alteration in our understanding of the immunopathology of filariasis.}, subject = {Onchozerkose}, language = {en} } @phdthesis{Vershenya2007, author = {Vershenya, Stanislav}, title = {T-cell receptor assay and reticulocyte-micronuclei assay as biological dosimeters for ionizing radiation in humans}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-28885}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2007}, abstract = {In radiation accidents biological methods are used in dosimetry, if the radiation dose could not be measured by physical methods. The knowledge of individual dose is a prerequisite for planning a medical treatment and for health risk evaluations. In the present work two biodosimetrical assays were calibrated in young patients who were treated with radioiodine for thyroid cancer. Patients were from Belarus. They suffered from radiation induced thyroid cancer as a consequence of the Chernobyl reactor accident. In radioiodine therapy (RIT) bone marrow and lymphatic organs are exposed to ionizing radiation at doses of 0.1 to 0.75 Sv within about 2 days. Since several RIT have to be applied with interval between each of them from 6 months up to approximately 1 year, total dose can be up to 2 Sv within 2 to 3 years. The dose for thyroid tissue is approximately 1000 times higher. The dose-response relationship was measured by the T-cell receptor test (TCR test) in T4 lymphocytes with and without in vitro incubation or by the micronucleus assay in transferrin receptor positive reticulocytes (MN-Tf-Ret test). In all these assays, the frequency of radiation-induced mutants of blood cells is measured using flow cytometry. The TCR test is a cumulative biodosimeter, which measures the total radiation dose within the last 5 to 10 years, whereas the result of the MN-Tf-Ret test reflects the radiation dose of approximately 24 hours interval. It takes 8 hours and 3 days to perform TCR and MN-Tf-Ret tests respectively. Calibration curves based on radioiodine treated patients can be used for dose estimation in humans, if the radiation conditions correspond to those in RIT. This limits their applicability to low dose-rate \&\#946;- and \&\#947;-irradiation and to doses per session not higher than about 0.5 Sv. If higher doses or dose-rates as well as the other types of ionizing radiation are involved, calibration curves in animals are indispensable. In the case MN-Tf-Ret test mouse models are established and may be used. The TCR assay was performed in 72 thyroid cancer patients aged between 14 and 25. T-cell mutant frequency (Mf) reaches its maximum only after half a year following the RIT. Then it declines exponentially. This decline could be described by the 3 parameter single exponential decay function. Based on this equation, the radiation dose could be calculated when the Mf and the time interval since exposure are known. Furthermore, the experimentally measured Mf value, which significantly exceeds the corresponding calculated Mf value would indicate an individual with higher radiosensitivity. However, among our patients there were none. The reticulocytes micronuclei test (MN-Tf-Ret) was performed in 46 radioiodine treated patients. When measuring the MN frequency (f(MN-Tf-Ret)) the measured cell fraction should be limited only to the youngest cohort of reticulocytes, because all the micronucleated erythrocytes are quickly removed from the peripheral blood by spleen. Thus, the MN test was performed only in CD71 positive (having transferring receptor) reticulocytes. These reticulocytes just entered the peripheral blood flow from red marrow. The MN frequency was measured before the therapy and then every day after the irradiation until day 7. MN frequency curve has typical shape with latent period for days 0 to 3. Then there is a sharp increase in MN frequency which lasts for 24 hours and could start between days 3 and 4. In the following days the MN frequency is dropping to its base level that equals the one before the treatment. The decay of MN frequency is depending on the half-life of radioiodine in the patient organism. If the half-life is low, then the increased f(MN-Tf-Ret) lasts shorter and vice versa. It was shown that the MN frequency curve could be described by the model where all the micronuclei arise only through the last mitosis of erythroblasts in the red marrow and the MN frequency is proportional to the radiation dose in the last cell cycle. The shape of this curve depends on the cell kinetics of erythropoiesis on one side and the exponential decay of radioiodine activity on the other. To the best of our knowledge, the MN-Tf-Ret test was applied in the present study for the first time in biological dosimetry.}, subject = {T-Lymphozyten-Rezeptor}, language = {en} } @phdthesis{Schenk2007, author = {Schenk, Rita}, title = {Impact of the CCN-proteins CYR61/CCN1 and WISP3/CCN6 on mesenchymal stem cells and endothelial progenitor cells}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-27766}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2007}, abstract = {CYR61 and WISP3 belong to the family of CCN-proteins. These proteins are characterised by 10\% cysteine residues whose positions are strictly conserved. The proteins are extracellular signalling molecules that can be associated with the extracellular matrix. CCN-proteins function in a cell- and tissue specific overlapping yet distinct manner. CCN-proteins are expressed and function in several cells and tissues of the musculoskeletal system. In this study the impact of the angiogenic inducer cysteine-rich protein 61 (CYR61/CCN1) on endothelial progenitor cells (EPCs) and mesenchymal stem cells (MSCs) as well as the wnt1 inducible signalling pathway protein 3 (WISP3/CCN6) on MSCs were elucidated. EPCs are promising cells to induce neovascularisation in ischemic regions as tissue engineered constructs. A major drawback is the small amount of cells that can be obtained from patients; therefore a stimulating factor to induce in vitro propagation of EPCs is urgently needed. In this study, mononuclear cells obtained from peripheral blood were treated with 0.5 µg/ml CYR61, resulting in an up to 7-fold increased cell number within one week compared to untreated control cells. To characterise if EPCs treated with CYR61 display altered or maintained EPC phenotype, the expression of the established markers CD34, CD133 and KDR as well as the uptake of acLDL and concurrent staining for ulex lectin was analysed. Both CYR61 treated and untreated control cells displayed EPCs characteristics, indicating that CYR61 treatment induces EPC number without altering their phenotype. Further studies revealed that the stimulating effect of CYR61 on EPCs is due to enhanced adhesion, rather than improved proliferation. Usage of mutated CYR61-proteins showed that the adhesive effect is mediated, at least partly, by the integrin \&\#945;6\&\#946;1, while the integrin \&\#945;\&\#965;\&\#946;3 has no influence. Endogenous expression of CYR61 was not detectable in EPCs, which indicated that control cells are not influenced by endogenous secretion of CYR61 and also could explain the dose-dependent effect of CYR61 that is measured at a low concentration of 0.05 µg/ml. MSCs were treated with 0.5 µg/ml CYR61, a combination of growth factors including VEGF, both together and compared to untreated control cells. Matrigel angiogenesis assay revealed an induction of angiogenesis, detected by induced sprouting of the cells, after CYR61 treatment of the MSC. Induced sprouting and vessel like structure formation after CYR61 treatment was similar to the results obtained after treatment with growth factors including the established angiogenesis inducer VEGF. This result clearly demonstrates the angiogenic potential of CYR61 on MSCs. Further studies revealed a migrative and proliferative effect of CYR61 on MSCs. Both properties are crucial for the induction of angiogenesis thus further strengthening the view of CYR61 as an angiogenic inducer. MSCs and EPCs are promising cells for tissue engineering applications in bone remodelling and reconstruction. MSCs due to their potential to differentiate into other lineages; EPCs induce neovascularisation within the construct. Both cell types respond to CYR61 treatment. Furthermore EPCs home to sides were CYR61 expression is detectable and both are induced by similar stimulators. Therefore CYR61 is a promising factor for tissue engineered bone reconstruction applications. WISP3 is expressed in cartilage in vivo and in chondrocytes in vitro. Loss of function mutations in the WISP3 gene are associated to the inherited human disease progressive pseudorheumatoid dysplasia (PPD), that is characterised by cartilage loss and bone and joint destruction. Since MSCs also express the protein, the aim of this study was to elucidate if recombinant protein targets MSCs. A migratory effect of WISP3 treatment on MSCs and osteogenic differentiated MSCs has been proven in this study. To elucidate if global gene expression patterns are influenced by WISP3, cells were treated with 0.5 µg/ml WISP3 and compared to untreated control MSCs. Gene expression study by using affymetrix technology revealed an induction of interferon inducible genes including CXCL chemokines and members of the TNFSF family. Reevaluation by RT-PCR on identical RNA and an additional time series confirmed the results. Although no established cartilage associated genes were detected as regulated genes within this 24h treatment, anti-angiogenic and immunosuppressive genes indicate a protective role of WISP3 for the cartilage, which is sensitive to inflammatory processes. Both CCN-proteins CYR61 and WISP3 are valuable for the musculoskeletal system. This and previous studies revealed the role of CYR61 for osteogenesis and angiogenesis of tissue engineered applications. WISP3 is responsible for development, protection and maintenance of cartilage. Therefore further studies with the proteins in the musculoskeletal system are of high relevance.}, subject = {Endothel}, language = {en} } @phdthesis{Krieglmeyer2007, author = {Krieglmeyer, Regina}, title = {How to Overcome Frustration? The Influence of Frustration on Motivational Orientation and Motivational Intensity}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-27841}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2007}, abstract = {Frustration has been investigated since the early beginnings of psychological research. Yet, it is still unclear how frustration influences the two main parameters of motivation, i.e., orientation (approach-avoidance) and intensity. Some theories propose that controllable frustration increases approach motivation, thereby maintaining motivational intensity. In contrast, other theories propose that the perception of obstacles immediately elicits an avoidance orientation because of the negative valence of the perceptual input. Yet, the latter theories can not explain how motivational intensity is maintained upon encountering obstacles. The aim of the present thesis is to integrate previous contradicting assumptions by describing the influence of frustration on motivational orientation and motivational intensity on the basis of a two-system model of behavior. The definition of frustration as an unexpected obstacle blocking the attainment of an anticipated gratification implies that the obstacle is immediately perceived, whereas the goal is only represented in working memory. According to two-system models, these two types of representations influence different levels of behavior regulation. Whereas spontaneous approach-avoidance tendencies are mainly determined by the valence of the perceptual input, decisions to engage effort to reach the goal are based on knowledge about goals and appraisals of controllability of obstacles. Supporting this theorizing, six experiments demonstrated that frustration immediately activates avoidance tendencies. This was true for frustration of approach goals as well as for frustration of avoidance goals. Furthermore, this effect did not depend on the type of frustration feedback, and was found when approach-avoidance tendencies were measured after completion of goal pursuit as well as while overcoming frustration. In addition, approaching obstacles impaired performance in a subsequent task, suggesting that approaching obstacles consumed cognitive resources. This further supports the assumption that obstacles immediately activate avoidance tendencies. Furthermore, dispositional action-state orientation, which has been previously shown to moderate automatic affective reactions, influenced approach-avoidance tendencies, indicating that affect mediates the impact of frustration on behavioral tendencies. Finally, manipulations of controllability of frustration did not influence spontaneous approach-avoidance tendencies, but measures of motivational intensity such as decisions to engage more effort as well as activation of goal-relevant behavioral schemata. In sum, these findings support the assumptions that immediately elicited motivational orientations are mainly a function of the valence of perceptual input, whereas behavior to reach the goal (i.e. motivational intensity) is regulated by working memory representations such as appraisals of goal expectancy. Motivational orientations may serve to prepare organisms for quick reactions to sudden, unexpected occurrences, whereas behavior regulation based on goal appraisals may provide stability and flexibility in long-term goal pursuit.}, subject = {Sozialpsychologie}, language = {en} } @phdthesis{Blenk2007, author = {Blenk, Steffen}, title = {Bioinformatical analysis of B-cell lymphomas}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-27421}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2007}, abstract = {Background: The frequency of the most observed cancer, Non Hodgkin Lymphoma (NHL), is further rising. Diffuse large B-cell lymphoma (DLBCL) is the most common of the NHLs. There are two subgroups of DLBCL with different gene expression patterns: ABC ("Activated B-like DLBCL") and GCB ("Germinal Center B-like DLBCL"). Without therapy the patients often die within a few months, the ABC type exhibits the more aggressive behaviour. A further B-cell lymphoma is the Mantle cell lymphoma (MCL). It is rare and shows very poor prognosis. There is no cure yet. Methods: In this project these B-cell lymphomas were examined with methods from bioinformatics, to find new characteristics or undiscovered events on the molecular level. This would improve understanding and therapy of lymphomas. For this purpose we used survival, gene expression and comparative genomic hybridization (CGH) data. In some clinical studies, you get large data sets, from which one can reveal yet unknown trends. Results (MCL): The published proliferation signature correlates directly with survival. Exploratory analyses of gene expression and CGH data of MCL samples (n=71) revealed a valid grouping according to the median of the proliferation signature values. The second axis of correspondence analysis distinguishes between good and bad prognosis. Statistical testing (moderate t-test, Wilcoxon rank-sum test) showed differences in the cell cycle and delivered a network of kinases, which are responsible for the difference between good and bad prognosis. A set of seven genes (CENPE, CDC20, HPRT1, CDC2, BIRC5, ASPM, IGF2BP3) predicted, similarly well, survival patterns as proliferation signature with 20 genes. Furthermore, some bands could be associated with prognosis in the explorative analysis (chromosome 9: 9p24, 9p23, 9p22, 9p21, 9q33 and 9q34). Results (DLBCL): New normalization of gene expression data of DLBCL patients revealed better separation of risk groups by the 2002 published signature based predictor. We could achieve, similarly well, a separation with six genes. Exploratory analysis of gene expression data could confirm the subgroups ABC and GCB. We recognized a clear difference in early and late cell cycle stages of cell cycle genes, which can separate ABC and GCB. Classical lymphoma and best separating genes form a network, which can classify and explain the ABC and GCB groups. Together with gene sets which identify ABC and GCB we get a network, which can classify and explain the ABC and GCB groups (ASB13, BCL2, BCL6, BCL7A, CCND2, COL3A1, CTGF, FN1, FOXP1, IGHM, IRF4, LMO2, LRMP, MAPK10, MME, MYBL1, NEIL1 and SH3BP5; Altogether these findings are useful for diagnosis, prognosis and therapy (cytostatic drugs).}, subject = {Bioinformatik}, language = {en} } @phdthesis{Karg2007, author = {Karg, Stefan}, title = {Calculations of multi-particle processes at the one-loop level: precise predictions for the LHC}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-27505}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2007}, abstract = {The Standard Model (SM) of elementary particle physics provides a uniform framework for the description of three fundamental forces, the electromagnetic and weak forces, describing interactions between quarks and leptons, and the strong force, describing a much stronger interaction between the coloured quarks. Numerous experimental tests have been performed in the last thirty years, showing a spectacular agreement with the theoretical predictions of the Standard Model, even at the per mille level, therefore validating the model at the quantum level. An important cornerstone of the Standard Model is the Higgs mechanism, which provides a possible explanation of electroweak symmetry breaking, responsible for the masses of elementary fermions and the W and Z bosons, the carriers of the weak force. This mechanism predicts a scalar boson, the Higgs boson, which has escaped its discovery so far. If the Higgs mechanism is indeed realised in nature, the upcoming Large Hadron Collider (LHC) at CERN will be able to find the associated Higgs boson. The discovery of a Higgs boson by itself is not sufficient to establish the Higgs mechanism, the basic ingredient being the Higgs potential which predicts trilinear and quartic couplings. These have to be confirmed experimentally by the study of multi-Higgs production. We therefore present a calculation of the loop-induced processes gg to HH and gg to HHH, and investigate the observability of multi-Higgs boson production at the LHC in the Standard Model and beyond. While the SM cross sections are too small to allow observation at the LHC, we demonstrate that physics beyond the SM can lead to amplified, observable cross sections. Furthermore, the applicability of the heavy top quark approximation in two- and three-Higgs boson production is investigated. We conclude that multi-Higgs boson production at the SuperLHC is an interesting probe of Higgs sectors beyond the SM and warrants further study. Despite the great success of the SM, it is widely believed that this model cannot be valid for arbitrarily high energies. The LHC will probe the TeV scale and theoretical arguments indicate the appearance of physics beyond the SM at this scale. The search for new physics requires a precise understanding of the SM. Precise theoretical predictions are needed which match the accuracy of the experiments. For the LHC, most analyses require next-to-leading order (NLO) precision. Only then will we be able to reliably verify or falsify different models. At the LHC, many interesting signatures involve more than two particles in the final state. Precise theoretical predictions for such multi-leg processes are a highly nontrivial task and new efficient methods have to be applied. The calculation of the process PP to VV+jet at NLO is an important background process to Higgs production in association with a jet at the LHC. We compute the virtual corrections to this process which form the "bottleneck" for obtaining a complete NLO prediction. The resulting analytic expressions are generated with highly automated computer routines and translated into a flexible Fortran code, which can be employed in the computation of differential cross sections of phenomenological interest. The obtained results for the virtual corrections indicate that the QCD corrections are sizable and should be taken into account in experimental studies for the LHC.}, subject = {Higgs-Teilchen}, language = {en} } @phdthesis{PatinoGonzalez2007, author = {Pati{\~n}o Gonzalez, Edwin}, title = {Functional Studies and X-Ray Structure Analysis of Human Interleukin-5 Receptor Alpha and Human Interleukin-5 Complex}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-27319}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2007}, abstract = {Interleukin-5 (IL-5) is a member of the hematopoietic class I cytokines and is specifically involved in eosinophil activation. IL-5 plays an important role in disease conditions such as allergic asthma and other hypereosinophilias, which are characterized by highly increased levels of eosinophils in peripheral blood and tissues. The IL-5 receptor is a heterodimer consisting of a binding alpha subunit (IL- 5R\&\#945;) and a common beta subunit (IL-5R\&\#946;). This IL-5R\&\#946; is shared with the IL-3 and GM-CSF receptors. The IL-5R\&\#945; is required for ligand-specific binding, whereas the association of the IL-5R\&\#946; subunit triggers intracellular signal transduction. Previous studies have described the crystallographic structure of human IL-5 (hIL-5), as well as that of the common IL-5R\&\#946; chain (IL-5R\&\#946;c) However, no experimental structural data are yet available for the interaction of the high-affinity IL-5 receptor IL-5R\&\#945; with its ligand IL-5. Therefore, this thesis had the principle objective to gain new insights into the basis of this important agonist-receptor interaction. In particular, data on the recombinant expression, purification and preparation of the binary complex of hIL-5 bound to the receptor ectodomain of hIL-5R\&\#945; are shown, as well as the subsequent crystal structure analysis of the binary ligand-receptor (hIL-5R\&\#945;/hIL-5) complex. Both proteins were expressed in an Escherichia coli expression system, purified to homogeneity, and crystallized. However, since the initial analysis of these crystals did not show any X-ray diffraction, each step of the preparation and crystallization procedure had to be stepwise optimized. Several improvements proved to be crucial for obtaining crystals suitable for structure analysis. A free cysteine residue in the N-terminal domain of the hIL-5R\&\#945; ectodomain protein was mutated to alanine to remove protein heterogeneity. In addition, hIL-5 affinity chromatography of the receptor protein proved to be absolutely crucial for crystal quality. Additive screening using the initial crystallization condition finally yielded crystals of the binary complex, which diffracted to 2.5{\AA} resolution and were suitable for structure analysis. The preliminary structure data demonstrate a new receptor architecture for the IL-5R\&\#945; ligand-binding domain, which has no similarities to other cytokine class I receptor structures known so far. The complex structure demonstrates that the ligand-binding region of human IL-5R\&\#945; is dispersed over all three extracellular domains, and adopts a binding topology in which the cytokine recognition motif (CRM) needs the first Fn-III domain of the human IL-5R\&\#945; to bind the ligand. In a second project, a prokaryotic expression system for murine IL-5 (mIL-5) was established to allow the production of mIL-5 and mIL-5 antagonist that should facilitate functional studies in mice. Since the expression of mIL-5 in E. coli had never been successful so far, a fusion protein system was generated expressing high yields of mIL-5. Chemical cleavage with cyanogen bromide (CNBr) was used to release mIL-5 monomers, which were subsequently purified and refolded. This technique yielded an active murine IL-5 dimer as confirmed by TF-1 cell proliferation assays. The protein was crystallized and the structure of mIL-5 could be determined at 2.5{\AA} resolution. The molecular structure revealed a symmetrical left-handed four helices bundle dimer similar to human IL-5. Analysis of the structure-/function relationship allowed us to design specific mIL-5 antagonist molecules, which are still under examination. Taken together, these findings provide further insights in the IL-5 and IL-5R interaction which may help to further understand and depict this and other cytokine-receptor interactions of similar architecture, e.g. the IL-13 ligand-receptor system. Ultimately, this may represent another piece of puzzle in the attempts to rationally design and engineer novel IL-5-related pharmacological therapeutics.}, subject = {Functional Studies}, language = {en} } @phdthesis{Koenig2007, author = {K{\"o}nig, Markus}, title = {Spin-related transport phenomena in HgTe-based quantum well structures}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-27301}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2007}, abstract = {Within the scope of this thesis, spin related transport phenomena have been investigated in HgTe/HgCdTe quantum well structures. This material exhibits peculiar band structure properties, which result in a strong spin-orbit interaction of the Rashba type. An inverted band structure, i.e., a reversed ordering of the energy states in comparison to common semiconductors, is obtained for quantum well layers above a critical thickness. Furthermore, the band structure properties can be controlled in the experiments by moderate gate voltages. Most prominently, the type of carriers in HgTe quantum wells can be changed from n to p due to the narrow energy gap. Along with the inverted band structure, this unique transition is the basis for the demonstration of the Quantum Spin Hall state, which is characterized by the existence of two one-dimensional spin-polarized edge states propagating in opposite directions, while the Fermi level in the bulk is in the energy gap. Since elastic scattering is suppressed by time reversal symmetry, a quantized conductance for charge and spin transport is predicted. Our experiments provide the first experimental demonstration of the QSH state. For samples with characteristic dimensions below the inelastic mean free path, charge conductance close to the expected value of 2e^2/h has been observed. Strong indication for the edge state transport was found in the experiments as well. For large samples, potential fluctuations lead to the appearance of local n-conducting regions which are considered to be the dominant source of backscattering. When time reversal symmetry is broken in a magnetic field, elastic scattering becomes possible and conductance is significantly suppressed. The suppression relies on a dominant orbital effect in a perpendicular field and a smaller Zeeman-like effect present for any field direction. For large perpendicular fields, a re-entrant quantum Hall state appears. This unique property is directly related to the non-trivial QSH insulator state. While clear evidence for the properties of charge transport was provided, the spin properties could not be addressed. This might be the goal of future experiments. In another set of experiments, the intrinsic spin Hall effect was studied. Its investigation was motivated by the possibility to create and to detect pure spin currents and spin accumulation. A non-local charging attributed to the SHE has been observed in a p-type H-shaped structure with large SO interaction, providing the first purely electrical demonstration of the SHE in a semiconductor system. A possibly more direct way to study the spin Hall effects opens up when the spin properties of the QSH edge states are taken into account. Then, the QSH edge states can be used either as an injector or a detector of spin polarization, depending on the actual configuration of the device. The experimental results indicate the existence of both intrinsic SHE and the inverse SHE independently of each other. If a spin-polarized current is injected from the QSH states into a region with Rashba SO interaction, the precession of the spin can been observed via the SHE. Both the spin injection and precession might be used for the realization of a spin-FET similar to the one proposed by Datta and Das. Another approach for the realization of a spin-based FET relies on a spin-interference device, in which the transmission is controlled via the Aharonov-Casher phase and the Berry phase, both due to the SO interaction. In the presented experiments, ring structures with tuneable SO coupling were studied. A complex interference pattern is observed as a function of external magnetic field and gate voltage. The dependence on the Rashba splitting is attributed to the Aharonov-Casher phase, whereas effects due to the Berry phase remain unresolved. This interpretation is confirmed by theoretical calculations, where multi-channel transport through the device has been assumed in agreement with the experimental results. Thus, our experiments provide the first direct observation of the AC effect in semiconductor structures. In conclusion, HgTe quantum well structures have proven to be an excellent template for studying spin-related transport phenomena: The QSHE relies on the peculiar band structure of the material and the existence of both the SHE and the AC effect is a consequence of the substantial spin-orbit interaction. While convincing results have been obtained for the various effects, several questions can not be fully answered yet. Some of them may be addressed by more extensive studies on devices already available. Other issues, however, ask, e.g., for further advances in sample fabrication or new approaches by different measurements techniques. Thus, future experiments may provide new, compelling insights for both the effects discussed in this thesis and, more generally, other spin-orbit related transport properties.}, subject = {Spin-Bahn-Wechselwirkung}, language = {en} } @phdthesis{Travers2007, author = {Travers, Stephen}, title = {Structural Properties of NP-Hard Sets and Uniform Characterisations of Complexity Classes}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-27124}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2007}, abstract = {This thesis is devoted to the study of computational complexity theory, a branch of theoretical computer science. Computational complexity theory investigates the inherent difficulty in designing efficient algorithms for computational problems. By doing so, it analyses the scalability of computational problems and algorithms and places practical limits on what computers can actually accomplish. Computational problems are categorised into complexity classes. Among the most important complexity classes are the class NP and the subclass of NP-complete problems, which comprises many important optimisation problems in the field of operations research. Moreover, with the P-NP-problem, the class NP represents the most important unsolved question in computer science. The first part of this thesis is devoted to the study of NP-complete-, and more generally, NP-hard problems. It aims at improving our understanding of this important complexity class by systematically studying how altering NP-hard sets affects their NP-hardness. This research is related to longstanding open questions concerning the complexity of unions of disjoint NP-complete sets, and the existence of sparse NP-hard sets. The second part of the thesis is also dedicated to complexity classes but takes a different perspective: In a sense, after investigating the interior of complexity classes in the first part, the focus shifts to the description of complexity classes and thereby to the exterior in the second part. It deals with the description of complexity classes through leaf languages, a uniform framework which allows us to characterise a great variety of important complexity classes. The known concepts are complemented by a new leaf-language model. To a certain extent, this new approach combines the advantages of the known models. The presented results give evidence that the connection between the theory of formal languages and computational complexity theory might be closer than formerly known.}, subject = {Berechnungskomplexit{\"a}t}, language = {en} } @phdthesis{Robubi2007, author = {Robubi, Armin}, title = {RAF Kinases: Pathway, Modulation and Modeling}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-26953}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2007}, abstract = {The Ras/RAF/MEK/ERK cascade is a central cellular signal transduction pathway involved in cell proliferation, differentiation, and survival where RAF kinases are pivotal kinases implicated in cancer. The development of specific irreversible kinase inhibitors is a rewarding but difficult aim. CI-1033 was developed to irreversibly inhibit erbB receptor tyrosine kinases by reacting to the Cys113 residue (p38alpha MAP kinase numbering) of the kinase domain. In this study we tried a similar approach to target the RAF oncoproteins which posses a similar cysteine at position 108 in the hinge region between the small n-lobe and the large c-lobe of the kinase domain. A novel synthetic approach including a lyophilization step allowed us the synthesis of a diphenyl urea compound with an epoxide moiety (compound 1). Compound 1 possessed inhibitory activity in vitro. However our time kinetics experiments and mass spectroscopic studies clearly indicate that compound 1 does not react covalently with the cysteine residue in the hinge region. Moreover, in cell culture experiments, a strong activation of the RAF signaling pathway was observed, an effect which is known from several other RAF kinase inhibitors and is here reported for the first time for a diphenyl urea compound, to which the clinically used unspecific kinase inhibitor BAY 43-9006 (Sorafinib, Nexavar) belongs. Although activation was apparently independent on B- and C-RAF hetero-oligomerization in vitro, in vivo experiments support such a mechanism as the activation did not occur in starved knockout cells lacking either B-RAF or C-RAF. Furthermore, we developed a mathematical model of the Ras/RAF/MEK/ERK cascade demonstrating how stimuli induce different signal patterns and thereby different cellular responses, depending on cell type and the ratio between B-RAF and C-RAF. Based on biochemical data for activation and dephosphorylation, we set up differential equations for a dynamical model of the Ras/RAF/MEK/ERK cascade. We find a different signaling pattern and response result for B-RAF (strong activation, sustained signal) and C-RAF (steep activation, transient signal). We further support the significance of such differential modulatory signaling by showing different RAF isoform expression in various cell lines and experimental testing of the predicted kinase activities in B-RAF, C-RAF as well as mutated versions. Additionally the effect of the tumor suppressor DiRas3 (also known as Noey2 or ARHI) on RAF signaling was studied. I could show that DiRas3 down-regulates the mitogenic pathway by inhibition of MEK, a basis for a refined model of the Ras/RAF/MEK/ERK cascade.}, subject = {Systembiologie}, language = {en} } @phdthesis{Roeger2007, author = {R{\"o}ger, Cornelia}, title = {Bioinspired Light-Harvesting Zinc Chlorin Rod Aggregates Powered by Peripheral Chromophores}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-26760}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2007}, abstract = {Artificial light-harvesting (LH) systems have been obtained by self-assembly of naphthalene diimide-functionalized zinc chlorin dyads and triad in nonpolar, aprotic solvents. UV-vis, CD, and steady-state emission spectroscopy as well as atomic force microscopy showed that rod-like structures are formed by excitonic interactions of zinc chlorin units, while the appended naphthalene diimide dyes do not aggregate at the periphery of the cylinders. In all cases, photoexcitation of the enveloping naphthalene diimides at 540 and 620 nm, respectively, was followed by highly efficient energy-transfer processes to the inner zinc chlorin backbone, as revealed by time-resolved fluorescence spectroscopy on the picosecond time-scale. As a consequence, the LH efficiencies of zinc chlorin rod aggregates were increased by up to 63\%. The effective utilization of solar energy recommends these biomimetic systems for an application in electronic materials on the nanoscale.}, subject = {Farbstoff}, language = {en} } @phdthesis{Iuga2007, author = {Iuga, Maria}, title = {Ab Initio and Finite Element Simulations of Material Properties in Multiphase Ceramics}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-26246}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2007}, abstract = {In the present study numerical methods are employed within the framework of multiscale modeling. Quantum mechanics and finite element method simulations have been used in order to calculate thermoelastic properties of ceramics. At the atomic scale, elastic constants of ten different ceramics (Al2O3, alpha- and beta-SiC, TiO2-rutile and anatase, AlN, BN, CaF2, TiB2, ZrO2) were calculated from the first principles (ab-initio) using the density functional theory with the general gradient approximation. The simulated elastic moduli were compared with measured values. These results have shown that the ab-initio computations can be used independently from experiment to predict elastic behavior and can provide a basis for the modeling of structural and elastic properties of more complex composite ceramics. In order to simulate macroscopic material properties of composite ceramics from the material properties of the constituting phases, 3D finite element models were used. The influence of microstructural features such as pores and grain boundaries on the effective thermoelastic properties is studied through a diversity of geometries like truncated spheres in cubic and random arrangement, modified Voronoi polyhedra, etc. A 3D model is used for modeling the microstructure of the ceramic samples. The measured parameters, like volume fractions of the two phases, grain size ratios and grain boundary areas are calculated for each structure. The theoretical model is then varied to fit the geometrical data derived from experimental samples. The model considerations are illustrated on two types of bi-continuous materials, a porous ceramic, alumina (Al2O3) and a dense ceramic, zirconia-alumina composite (ZA). For the present study, alumina samples partially sintered at temperatures between 800 and 1320 C, with fractional densities between 58.4\% and 97\% have been used. For ZA ceramic the zirconia powder was partially stabilized and the ratio between alumina and zirconia was varied. For these two examples of ceramics, Young's modulus and thermal conductivity were calculated and compared to experimental data of samples of the respective microstructure. Comparing the experimental and simulated values of Young's modulus for Al2O3 ceramic a good agreement was obtained. For the thermal conductivity the consideration of thermal boundary resistance (TBR) was necessary. It was shown that for different values of TBR the experimental data lie within the simulated thermal conductivities. In the case of ZA ceramic also a good agreement between simulated and experimental values was observed. For smaller ZrO2 fractions, a larger Young's modulus and thermal conductivity was observed in the experimental samples. The discrepancies have been discussed by taking into account the effect of pressure. Considering the dependence of the thermoelastic properties on the pressure, it has been shown that the thermal stresses resulting from the cooling process were insufficient to explain the discrepancies between experimental and simulated thermoelastic properties.}, subject = {Finite-Elemente-Methode}, language = {en} } @phdthesis{Chen2007, author = {Chen, Wen}, title = {Functional Role of NFATc1 in the Control of Life and Death of Lymphocytes}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-26675}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2007}, abstract = {In this study, murine ES cells and DT40 B cells were used in parallel to disrupt the Nfatc1 gene and to study the function of individual 6 Nfatc1 isoforms, especially the function of highly inducible NFATc1/aA.We found that the short isoform NFATc1/aA protects DT40 B cells against apoptosis while the long isoform NFATc1/aC appears to enforce apoptosis. DNA microarray studies have shown that in NFATc1" DT40 B cells expressing ectopically human NFATc1/aA, the pkc-theta gene is several fold stronger expressed as in wild type cells. Our results of EMSA (Electrophoretic Mobility Shift Assays) and ChIP (chromatin immuno-precipitation) experiments demonstrated the binding of NFATc1/aA to the pkc-theta promoter in vitro and in vivo. NF-kappa B was also found to bind to the NFATc1 P1-promoter in vitro and in vivo. These data suggest and further prove that NF-kappa B contributes to the induction of the NFATc1 P1 promoter upon activation of T cells. So, NFATc1/aA and NF-kappa B were found to cross-talk in the transcriptional upregulation of their target genes, such as the IL-2 gene and the Nfatc1 gene itself, at multiple steps upon induction of apoptosis. While the pro-apoptotic mechanism of NFATc1s long isoform(s) remains unclear, its corresponding "death partners" are worth further studies. The elucidation of functional roles of NFATc1s short or long isoforms in the control of apoptosis of lymphocytes helps to understand apoptosis regulation, and thereby, the fate of lymphocytes.}, subject = {Lymphozyten}, language = {en} } @phdthesis{Scheibner2007, author = {Scheibner, Ralf}, title = {Thermoelectric Properties of Few-Electron Quantum Dots}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-26699}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2007}, abstract = {This thesis presents an experimental study of the thermoelectrical properties of semiconductor quantum dots (QD). The measurements give information about the interplay between first order tunneling and macroscopic quantum tunneling transport effects in the presence of thermal gradients by the direct comparison of the thermoelectric response and the energy spectrum of the QD. The aim of the thesis is to contribute to the understanding of the charge and spin transport in few-electron quantum dots with respect to potential applications in future quantum computing devices. It also gives new insight into the field of low temperature thermoelectricity. The investigated QDs were defined electrostatically in a two dimensional electron gas (2DEG) formed with a GaAs/(Al,Ga)As heterostructure by means of metallic gate electrodes on top of the heterostructure. Negative voltages with respect to the potential of the 2DEG applied to the gate electrodes were used to deplete the electron gas below them and to form an isolated island of electron gas in the 2DEG which contains a few ten electrons. This QD was electrically connected to the 2DEG via two tunneling barriers. A special electron heating technique was used to create a temperature difference between the two connecting reservoirs across the QD. The resulting thermoelectric voltage was used to study the charge and spin transport processes with respect to the discrete energy spectrum and the magnetic properties of the QD. Such a two dimensional island usually exhibits a discrete energy spectrum, which is comparable to that of atoms. At temperatures below a few degrees Kelvin, the electrostatic charging energy of the QDs exceeds the thermal activation energy of the electrons in the leads, and the transport of electrons through the QD is dominated by electron-electron interaction effects. The measurements clarify the overall line shape of thermopower oscillations and the observed fine structure as well as additional spin effects in the thermoelectrical transport. The observations demonstrate that it is possible to control and optimize the strength and direction of the electronic heat flow on the scale of a single impurity and create spin-correlated thermoelectric transport in nanostructures, where the experimenter has a close control of the exact transport conditions. The results support the assumption that the performance of thermoelectric devices can be enhanced by the adjustment of the QD energy levels and by exploiting the properties of the spin-correlated charge transport via localized, spin-degenerate impurity states. Within this context, spin entropy has been identified as a driving force for the thermoelectric transport in the spin-correlated transport regime in addition to the kinetic contributions. Fundamental considerations, which are based on simple model assumptions, suggest that spin entropy plays an important role in the presence of charge valence fluctuations in the QD. The presented model gives an adequate starting point for future quantitative analysis of the thermoelectricity in the spin-correlated transport regime. These future studies might cover the physics in the limit of single electron QDs or the physics of more complex structures such as QD molecules as well as QD chains. In particular, it should be noted that the experimental investigations of the thermopower of few-electron QDs address questions concerning the entropy transport and entropy production with respect to single-bit information processing operations. These questions are of fundamental physical interest due to their close connection to the problem of minimal energy requirements in communication, and thus ultimately to the so called "Maxwell's demon" with respect to the second law of thermodynamics.}, subject = {Quantenpunkt}, language = {en} } @phdthesis{Bruenger2007, author = {Br{\"u}nger, Christian}, title = {Numerical Studies of Quantum Spin Systems}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-26439}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2007}, abstract = {Der erste Teil der Arbeit widmet sich der Untersuchung des Bilayer-Heisenberg-Modells und des zweidimensionalen Kondo-Necklace-Modells. Beide Modelle weisen einen Quantenphasen{\"u}bergang zwischen einer geordneten und einer ungeordneten Phase auf. In dieser Arbeit richtet sich das Interesse insbesondere auf die Kopplung der kritischen Fluktuationen an ein in das System eingebundenes Loch. Mittels eines selbstkonsistenten Born'schen N{\"a}herungsverfahrens wird gezeigt, dass das Loch mit den Magnonen derart wechselwirkt, dass dessen Quasiteilchengewicht am quantenkritischen Punkt verschwindet. Um diesen Aspekt weiter zu untersuchen, wird das Verhalten des Quasiteilchengewichts im Bereich der kritischen Kopplung auch mit Quanten-Monte-Carlo-Methoden analysiert. Desweiteren werden die dynamischen Eigenschaften des Loches im magnetischen Hintergrund untersucht. Im zweiten Teil dieser Arbeit gilt das Interesse der Untersuchung des Spiral-Staircase-Heisenberg-Modells. Dieses besteht aus zwei, zu einer Spinleiter ferromagnetisch gekopplten Spin-1/2-Ketten, wobei die antiferromagnetische Kopplung innerhalb der zweiten Kette durch Windung der Leiter variiert werden kann. Dieses Model eignet sich, den {\"U}bergang zwischen einer Spin-1/2-Kette ohne Spinl{\"u}cke und einer Spin-1-Kette mit Spinl{\"u}cke zu studieren. Besondere Beachtung ist dem {\"O}ffnen der Spinl{\"u}cke in Abh{\"a}ngigkeit der ferromagnetischen Kopplung zwischen den Leiterbeinen geboten. Es stellt sich heraus, dass das System, abh{\"a}ngig von der Leiterwindung, wesentliche Unterschiede im Skalierungsverhalten der Spinl{\"u}cke aufweist. Desweiteren wird mittels der String-Order-Parameter gezeigt, dass das Spiral-Staircase-Heisenberg-Modell trotz des unterschiedlichen Skalierungsverhaltens der Spinl{\"u}cke und unabh{\"a}ngig von der Wahl der Parameter sich stets in der Haldane-Phase befindet. Die Analyse der Modelle bedient sich haupts{\"a}chlich Quanten-Monte-Carlo-Methoden, aber auch exakter Diagonalisierungstechniken, sowie auf Molekularfeldn{\"a}herungen gest{\"u}tzten Rechnungen.}, subject = {Spinsystem}, language = {en} } @phdthesis{Wagner2007, author = {Wagner, Toni}, title = {Activity and Crosstalk of STAT3 and BMP Signalling Pathways in Pluripotency Control of Mouse and Medaka Stem Cells}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-26495}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2007}, abstract = {- 77/83 allerdings inaktiv in Kulturen und Embryonen von Medaka. Dieser Unterschied wird durch Daten aus humanen ES-Zellkulturen unterst{\"u}tzt. Letztere sind ebenfalls komplett STAT3 unabh{\"a}ngig. Die BMP-Smad Kaskade wiederum ist in Medaka-Stammzellen aktiv, Antidifferenzierungsgene wie id2, die durch BMP direkt kontrolliert werden, sind dementsprechend exprimiert. Diese Daten stimmen wiederum mit dem Maussystem {\"u}berein, w{\"a}hrend humane ES-Zellen diesbez{\"u}glich bislang nicht untersucht wurden. Die Interaktion zwischen verschiedenen Signalwegen ist ein bisher noch nicht gut verstandenes Gebiet. Die Integration verschiedener Signale ist aber speziell f{\"u}r Stammzellen, die ihr Differenzierungsschicksal von winzigen Abweichungen in der Signalmixtur abh{\"a}ngig machen, von entscheidender Bedeutung. Im zweiten Teil der hier vorgelegten Arbeit konnte eine Interaktion zwischen dem BMP-Rezeptor 1a und STAT3 nachgewiesen werden. Diese Interaktion ist offenbar Teil eines variablen Komplexes. Zum ersten Mal war es auch m{\"o}glich, funktionale Konsequenzen f{\"u}r STAT3 nach Stimulierung des BMP-Rezeptors 1a zu dokumentieren. Nach Belegung des BMP-Rezeptors 1a mit dem mutierten BMP2-A34D wird STAT3 trotz Aktivierung durch Phosphorylierung an Tyrosin 705 im Zytoplasma von Maus Stammzellen festgehalten. Zusammengenommen konnte hier gezeigt werden, dass eine Interaktion zwischen den bislang als isoliert betrachteten Signalwegen BMP-Smad und STAT3 besteht. Des Weiteren wurde das Medaka-Stammzellkultursystem benutzt, um zu zeigen, dass STAT3 f{\"u}r die Pluripotenz von Stammzellen nur im Maussystem eine Rolle spielt, wohingegen BMPZielgene wie id2 in bislang allen getesteten ES-Zellkultursystemen aktiv sind.}, subject = {Stammzellen}, language = {en} } @phdthesis{Karickal2007, author = {Karickal, Jose Thomas}, title = {FROM PROFESSIONAL FUNCTIONING TO PERSONAL CONFESSION - Henri J.M. Nouwen's contribution to the contemporary spirituality of pastoral care}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-26305}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2007}, abstract = {Henri J.M. Nouwen (1932-1996), a renowned pastoral theologian, has written more than 40 books among which several are about pastoral care and the spirituality of pastoral care. It was interesting for me to notice the parallel between his life and the contents of his books. He has undergone a tremendous personal development and spiritual maturity. His books invite all the christians and pastors to grow in the spiritual life. The spirituality is the underlying principle of creative ministry. Nouwen moves away from the traditional approach and concepts and develops his own concept of spiritual growth and pastoral care. Rooted in tradition and trained as a pastoral psychologist Nouwen is very appealing to the modern generation. This dissertation takes the reader through the life and writings of Nouwen to come to his original and new understanding of the spirituality of the pastoral care.}, subject = {Karickal}, language = {en} } @phdthesis{Binzenhoefer2007, author = {Binzenh{\"o}fer, Andreas}, title = {Performance Analysis of Structured Overlay Networks}, doi = {10.25972/OPUS-2250}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-26291}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2007}, abstract = {Overlay networks establish logical connections between users on top of the physical network. While randomly connected overlay networks provide only a best effort service, a new generation of structured overlay systems based on Distributed Hash Tables (DHTs) was proposed by the research community. However, there is still a lack of understanding the performance of such DHTs. Additionally, those architectures are highly distributed and therefore appear as a black box to the operator. Yet an operator does not want to lose control over his system and needs to be able to continuously observe and examine its current state at runtime. This work addresses both problems and shows how the solutions can be combined into a more self-organizing overlay concept. At first, we evaluate the performance of structured overlay networks under different aspects and thereby illuminate in how far such architectures are able to support carrier-grade applications. Secondly, to enable operators to monitor and understand their deployed system in more detail, we introduce both active as well as passive methods to gather information about the current state of the overlay network.}, subject = {Overlay-Netz}, language = {en} } @phdthesis{Keller2007, author = {Keller, Christian}, title = {The role of dendritic cells in the immunoregulation of leishmaniasis - transfection of dendritic cells with mRNA encoding a molecularly defined parasitic antigen}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-26208}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2007}, abstract = {Die kutane Leishmaniose ist eine Infektionskrankheit, die besonders in tropischen und W{\"u}stenregionen endemisch ist, mit einer Inzidenz von 1,5 Millionen F{\"a}llen im Jahr und einer Pr{\"a}valenz von 12 Millionen Infizierten weltweit. Die Infektion kann durch den intrazellul{\"a}ren Parasiten Leishmania major hervorgerufen werden. Am Mausmodell ist die Krankheit ausf{\"u}hrlich untersucht. Wie dabei deutlich wurde, ist f{\"u}r die Immunit{\"a}t gegen den Erreger die Induktion einer Klasse von Interferon (IFN)-\&\#61543;-produzierenden CD4+ T-Helfer-Zellen (TH1-Zellen) entscheidend, welche Makrophagen dazu aktivieren, die von ihnen beherbergten Parasiten abzut{\"o}ten. Die Umlenkung der Immunantwort in Richtung einer sch{\"u}tzenden TH1-Antwort wird auch der Schl{\"u}ssel zu einem effektiven Impfstoff sein. Ex vivo mit Leishmanienantigenen beladene dendritische Zellen sind vor einiger Zeit als Vakzine gegen L. major-Infektionen beschrieben worden. Ein einzelnes rekombinantes Antigen, LeIF (Leishmania homologue of eukaryotic ribosomal initiation factor 4a), ein parasit{\"a}res Protein, das die IL-12-Produktion durch dendritische Zellen stimuliert und das als mikrobiell konserviertes Strukturmolek{\"u}l (pattern-associated molecular pattern; PAMP) diskutiert wird, vermittelte dabei, zum Pulsen von dendritischen Zellen verwendet, einen sch{\"u}tzenden TH1-abh{\"a}ngigen Effekt. Der Einsatz rekombinanter Proteine ist jedoch mit etlichen Nachteilen verbunden, weshalb andere Methoden zur Verabreichung von Antigenen entwickelt wurden. Aus der Tumorforschung ist unl{\"a}ngst die RNA-Elektroporation dendritischer Zellen als eine sichere und vielseitige Methode hervorgegangen, bei der eine große Anzahl von RNA-Molek{\"u}len, die f{\"u}r ein bestimmtes Antigen kodieren, durch einen elektrischen Impuls in das Cytosol dendritischer Zellen gelangt. Die vorliegende Arbeit beschreibt zum ersten Mal die Transfektion dendritischer Zellen mit RNA eines molekular definierten Parasitenantigens. Zun{\"a}chst erfolgte die Etablierung eines standardisierten Protokolls f{\"u}r die RNA-Transfektion mit dem enhanced green fluorescent protein (EGFP) als Reporterantigen. EGFP-RNA war gut translatierbar in einem In-vitro-Translationssystem, und es konnten sowohl eine Zellinie (fetal skin-derived dendritic cells; FSDC) als auch prim{\"a}re, aus Knochenmarkkulturen der Maus gewonnene dendritische Zellen (bone marrow-derived dendritic cells; BMDC) mit einem Anteil von bis zu 90\% bzw. 75\% effizient EGFP-transfiziert werden. In beiden Zelltypen wurde die maximale Transfektionseffizienz mit 20 µg RNA erreicht, die mit gr{\"o}ßeren Mengen an RNA nicht weiter zu steigern war. Die H{\"o}he der Antigenexpression, gemessen als mittlere Fluoreszenzintensit{\"a}t (MFI) in der Durchflußzytometrie, war direkt proportional zur verwendeten RNA-Menge. In FSDC waren die Transfektionseffizienz und die MFI generell h{\"o}her als in BMDC bei gleicher RNA-Menge. Zudem konnte gezeigt werden, daß eine Behandlung mit LPS die Kinetik beeinflußt: Die maximale Expression war h{\"o}her und wurde auch eher erreicht, worauf zudem ein schnellerer Abfall folgte. In den Transfektionsexperimenten mit LeIF wurden zwei Varianten von LeIF-RNA verwendet: eine f{\"u}r die gesamte LeIF-Sequenz kodierende LeIF(fl)-RNA, und eine nur f{\"u}r die aminoterminale H{\"a}lfte der LeIF-Sequenz (226 Aminos{\"a}uren), dem immunogenen Teil des LeIF-Molek{\"u}ls, kodierende LeIF(226)-RNA. Im Western Blot von Ganzzellysaten dendritischer Zellen war nur LeIF(fl) nach Transfektion nachzuweisen, wohingegen LeIF(226) in LeIF(226)-transfizierten BMDC nie nachzuweisen war. Da beide Konstrukte aber gut im zellfreien System translatierbar waren, stellte der fehlgeschlagene Nachweis von LeIF(226) kein Fehlschlagen der RNA-Translation, sondern vielmehr einen raschen Antigenabbau dar. Es bestand daher die Erwartung, daß LeIF(226)-transfizierte BMDC trotzdem in der Lage sein m{\"u}ßten, von LeIF(226) abgeleitete antigene Peptide an T-Zellen von mit rekombinantem LeIF (rLeIF) immunisierten BALB/c-M{\"a}usen zu pr{\"a}sentieren. Diese Vermutung wurde durch Messung von IFN-\&\#61543; in Stimulationsversuchen mit BMDC und T-Zellen best{\"a}tigt, die zeigten, daß am Tag 7 der Kultur mit rLeIF gepulste, LeIF(226)- und LeIF(fl)-transfizierte BMDC in der Tat antigenspezifisch T-Zellen aus LeIF-immunisierten M{\"a}usen aktivierten. IL-4 hingegen wurde nicht produziert, was mit der Tatsache vereinbar ist, daß in Lymphknoten LeIF-vakzinierter M{\"a}usen haupts{\"a}chlich T-Zellen vom TH1-Typ zu finden sind. In den {\"U}berst{\"a}nden LeIF-transfizierter BMDC-Kulturen, im Gegensatz zu rLeIF-gepulsten BMDC, waren die proinflammatorischen Zytokine IL-1\&\#946;, IL-6, IL-10 und IL-12 nicht nachzuweisen. Dieser Effekt lag nicht am Elektroporationsvorgang, da die Zytokinproduktion von mit rekombinantem LeIF elektroporierten BMDC nur teilweise beeintr{\"a}chtigt war. Die Expression von CD86 war nach LeIF-Transfektion zudem geringer als nach Pulsen mit rLeIF. LeIF-Transfektion f{\"u}hrte mithin nicht zur Reifung dendritischer Zellen. LeIF-transfizierte BMDC k{\"o}nnten im Ergebnis als antigenspezifische Toleranzinduktoren fungiert haben, mit regulatorischen T-Zellen als Respondern. Der Effekt der Transfektion mit LeIF-RNA auf die immunstimulatorische Wirkung von BMDC war nicht signifikant erh{\"o}ht, wenn BMDC am Tag 8 oder 9 der Kultur verwendet wurden. BMDC, die am Tag 8, und mehr noch am Tag 9 mit rLeIF gepulst wurden, induzierten hingegen eine energische T-Zell-Antwort. BMDC vom Tag 9 waren sogar in der Lage, naive T-Zellen zu aktivieren. Bevor eine starke, gegen LeIF gerichtete T-Zell-Antwort eingeleitet werden kann, m{\"u}ssen dendritische Zellen also letztlich - neben Pr{\"a}sentation des Antigens und Expression kostimulatorischer Molek{\"u}le - eine gewisse „Empfindlichkeit" gegen{\"u}ber dem Strukturmolek{\"u}l LeIF besitzen, die mit ihrem Reifungsalter in Zusammenhang steht. Dieses dritte Signal wird nicht durch intrazellul{\"a}res LeIF nach Transfektion mit LeIF-RNA {\"u}bermittelt, oder es wird unterdr{\"u}ckt. Dar{\"u}ber hinaus war nach Elektroporation von rLeIF die IL-12-Produktion von BMDC g{\"a}nzlich aufgehoben, die Produktion von IL-1\&\#61538; bei h{\"o}heren Antigendosen reduziert und die Produktion von IL-10 teilweise erh{\"o}ht. Die Produktion von IL-6 war unbeeinflußt. Dieses ver{\"a}nderte Zytokinprofil legt eine Doppelnatur von LeIF als PAMP nahe: Neben der bei extrazellul{\"a}rem Vorliegen von LeIF erwiesenen Eigenschaft, die Produktion von IL-12 zu stimulieren, welches die Resistenz des Wirtes gegen L. major steigert, k{\"o}nnte LeIF bei intrazellul{\"a}rem Vorliegen auch zu Evasionsmechanismen des Parasiten vor dem Immunsystem des Wirtes beitragen, m{\"o}glicherweise durch Wechselwirkung mit MAP (mitogen-activated protein)-Kinase-Signalwegen. Die Eigenschaften von LeIF als Adjuvans h{\"a}ngen also sowohl von der Verabreichungsmethode (Transfektion mit RNA bzw. Pulsen mit dem rekombinanten Protein) als auch vom Zielkompartiment (extra- bzw. intrazellul{\"a}r) ab. Zusammenfassend konnte also in dieser Arbeit gezeigt werden, daß BMDC mit einem Parasitenantigen transfizierbar sind. Das Antigen wird dabei prozessiert und pr{\"a}sentiert, aber von dendritischen Zellen nicht als PAMP erkannt. Durch Transfektion mit antigenkodierender mRNA alleine werden mithin nicht alle notwendigen Signale f{\"u}r die Induktion einer potenten Immunantwort {\"u}bermittelt.}, subject = {Elektroporation}, language = {en} } @phdthesis{Bach2007, author = {Bach, Patricia}, title = {Immunogenicity of antigen-displaying virus-like particles and their use as a potential vaccine against prion diseases}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-25889}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2007}, abstract = {Transmissible spongiform encephalopathies (TSEs) or prion diseases are a group of infectious neurodegenerative diseases that are associated with misfolding of the cellular form of the cellular prion protein (PrPC) into a disease associated conformer (PrPSc). No therapy for prion diseases is available at present. So far, anti-PrPC vaccination is hampered by immunological tolerance of the mammalian immune system to endogenous PrPC. The aim of this thesis was to set up a new vaccination strategy based on virus-like particles (VLP) to induce anti-PrPC antibody responses in PrPC-competent mice. In a first step it was assessed whether VLP have the capacity to induce antibody responses that are protective against conventional pathogens. For this purpose, VLP displaying the vesicular stomatitis virus-gylcoprotein (VLP-VSV) were generated and tested for their immunogenicity. Similarly to live vesicular stomatitis virus (VSV), replication deficient VLP-VSV induced T help-independent VSV neutralizing IgM responses that switched to the IgG subclass in a T help-dependent manner. Furthermore, type I IFN receptor (IFNAR) triggering only marginally affected VLP-VSV induced neutralizing IgM responses, whereas it was critically required to promote the IgG switch. The analysis of conditional knockout mice with a lymphocyte-specific IFNAR deletion revealed that IFNAR triggering of lymphocytes did not play a crucial role, neither upon VLP-VSV nor VSV immunization. Collectively, these data verified the high immunogenicity of VLP. Therefore, in a next step VLP were generated displaying the C-terminal half of PrP (residues 121-231aa) fused to the platelet derived growth factor receptor (PDGFR) transmembrane region (VLP-PrPD111) for anti-PrPC immunization. On the surface of such retroparticles, PrPC was expressed at high levels as determined by electron microscopy. VLP-PrPD111 immunization of Prnp-deficient (Prnp0/0) mice resulted in antibody response specifically binding the cellular form of PrPC. Upon intravenous injection of wild-type mice, high PrPC-specific IgM responses were induced, whereas the T cell-dependent switch from the IgM to the IgG subclass was less pronounced. As a consequence, anti-PrPC titers were rather short-lived. The impaired subclass switch was probably related with host T cell tolerance to endogenous PrPC. Attempts to increase anti-PrPC IgG responses in wild-type mice via administration of VLP-PrPD111 emulsified in various different adjuvants failed. Nevertheless, in single individuals low IgG antibodies were induced after immunization of VLP-PrPD111 emulsified in CFA. To circumvent T cell tolerance in wild-type mice, a multitude of different immunization strategies was tested, including priming and boosting protocols with different types of VLP or VLP expressing PrPC together with foreign T helper epitopes. Overall, those efforts did not improve anti-PrPC IgG responses in wild-type mice. Interestingly, anti-PrPC antibodies induced in Prnp0/0 mice reduced PrPSc levels in prion infected cell cultures, whereas serum of vaccinated wild-type mice did not. To assess the protective capacity of VLP-PrPD111 induced immune responses, vaccinated wild-type mice were infected with scrapie (RML 5.0). Unfortunately, vaccinated mice did not show a significant delay in the onset of scrapie. In a last part of the thesis it was studied whether in the absence of T cell help activated "memory" B cells were able to produce anti-PrPC specific antibodies. To address this question, PrPC-specific memory B cells were sorted from vaccinated Prnp0/0 mice and adoptively transferred into wild-type recipient mice. Upon VLP-PrPD111 challenge, no PrPC-specific IgG titers were induced in the recipients. Nevertheless, several VLP-PrPD111 challenged recipient mice were protected against scrapie infection. In conclusion, VLP were characterized as highly immunogenic vaccines that were used to elucidate various questions concerning adaptive immune response and basic mechanisms of PrPC-specific tolerance vs. immunity. Remarkably, VLP-PrPD111 was able to induce native PrPC-specific antibodies in wild-type mice but major difficulties associated with PrPC-specific tolerance made efficacious scrapie vaccination impossible. New vaccination approaches are being tested to overcome these limitations.}, subject = {Prion}, language = {en} } @phdthesis{Colditz2007, author = {Colditz, Rene Roland}, title = {Time Series Generation and Classification of MODIS Data for Land Cover Mapping}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-25908}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2007}, abstract = {Processes of the Earth's surface occur at different scales of time and intensity. Climate in particular determines the activity and seasonal development of vegetation. These dynamics are predominantly driven by temperature in the humid mid-latitudes and by the availability of water in semi-arid regions. Human activities are a modifying parameter for many ecosystems and can become the prime force in well-developed regions with an intensively managed environment. Accounting for these dynamics, i.e. seasonal dynamics of ecosystems and short- to long-term changes in land-cover composition, requires multiple measurements in time. With respect to the characterization of the Earth surface and its transformation due to global warming and human-induced global change, there is a need for appropriate data and methods to determine the activity of vegetation and the change of land cover. Space-borne remote sensing is capable of monitoring the activity and development of vegetation as well as changes of the land surface. In many instances, satellite images are the only means to comprehensively assess the surface characteristics of large areas. A high temporal frequency of image acquisition, forming a time series of satellite data, can be employed for mapping the development of vegetation in space and time. Time series allow for detecting and assessing changes and multi-year transformation processes of high and low intensity, or even abrupt events such as fire and flooding. The operational processing of satellite data and automated information-extraction techniques are the basis for consistent and continuous long-term product generation. This provides the potential for directly using remote-sensing data and products for analyzing the land surface in relation to global warming and global change, including deforestation and land transformation. This study aims at the development of an advanced approach to time-series generation using data-quality indicators. A second goal focuses on the application of time series for automated land-cover classification and update, using fractional cover estimates to accommodate for the comparatively coarse spatial resolution. Requirements of this study are the robustness and high accuracy of the approaches as well as the full transferability to other regions and datasets. In this respect, the developments of this study form a methodological framework, which can be filled with appropriate modules for a specific sensor and application. In order to attain the first goal, time-series compilation, a stand-alone software application called TiSeG (Time Series Generator) has been developed. TiSeG evaluates the pixel-level quality indicators provided with each MODIS land product. It computes two important data-availability indicators, the number of invalid pixels and the maximum gap length. Both indices are visualized in time and space, indicating the feasibility of temporal interpolation. The level of desired data quality can be modified spatially and temporally to account for distinct environments in a larger study area and for seasonal differences. Pixels regarded as invalid are either masked or interpolated with spatial or temporal techniques.}, subject = {Zeitreihe}, language = {en} } @phdthesis{Hoyer2007, author = {Hoyer, Susanne Christine}, title = {Neuronal Correlates of Aggression in Drosophila melanogaster}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-25871}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2007}, abstract = {Aggression ist ein facettenreiches Ph{\"a}nomen, das sowohl in Vertebraten als auch in Invertebraten auftritt. Trotz der weiten Verbreitung dieses Verhaltens sind die neuronalen Netzwerke, die der Aggression zugrunde liegen, noch kaum bekannt. Zahlreiche Studien weisen den biogenen Aminen eine prominente Rolle in der Modulation von Aggression zu. Das Ziel dieser Doktorarbeit war mit Hilfe des Modellorganismus Drosophila melanogaster zu der Aufschl{\"u}sselung der neuronalen Korrelate von Aggression beizutragen, insbesondere im Hinblick auf das biogene Amin Oktopamin. In Drosophila sind aggressive Interaktionen aus einer Vielzahl von offensiven und defensiven Verhaltensweisen zusammengesetzt, von denen einige bez{\"u}glich der H{\"a}ufigkeit ihres Auftretens geschlechtsspezifisch sind. Um die Auswertung dieser vielseitigen Verhaltensweisen zu vereinfachen, wurde die Analyse auf einen einzigen Indikator f{\"u}r Aggression beschr{\"a}nkt: den „lunge". Diese bemerkenswerte Verhaltensweise tritt nur im Kontext der Aggression auf und ist charakteristisch f{\"u}r M{\"a}nnchen. In Kooperation mit Andreas Eckart habe ich ein Computerprogramm entwickelt, das eine automatische Ausz{\"a}hlung der lunges in einem vom Forscher gew{\"a}hlten Zeitraum durchf{\"u}hrt. Zus{\"a}tzlich erh{\"a}lt man u.a. Informationen {\"u}ber die Laufstrecke der einzelnen Tiere wie auch {\"u}ber ihre Gr{\"o}ße. Dank eines weiteren von uns entwickelten Programms ist es m{\"o}glich, K{\"a}mpfe zweier Drosophila M{\"a}nnchen unabh{\"a}ngig von deren Genotyp wahlweise automatisch oder halb-automatisch auszuwerten. Mit Hilfe dieser Programme wurde gezeigt, dass (1) die gemeinsame Laufaktivit{\"a}t der beiden M{\"a}nnchen mit der Anzahl aller aufgetretenen lunges korreliert und, dass (2) ein Gr{\"o}ßenunterschied von 8\% ausreichend ist, um zu beeinflussen, welches Tier mehr lunges durchf{\"u}hrt. Ebenfalls konnte festgestellt werden, dass (3) eine Nullmutation im ‚white' Gen, welches einen ABC-Transporter kodiert, aggressives Verhalten fast vollst{\"a}ndig unterdr{\"u}ckt, was teilweise auf eine visuelle Beeintr{\"a}chtigung zur{\"u}ckzuf{\"u}hren ist. Außerdem f{\"u}hrt (4) das Absenken des White-Levels in verschiedenen Bereichen des Zentralgehirns zu reduzierter Aggression; ein Effekt, der auch durch die chemische Entfernung der Pilzk{\"o}rper, einer Struktur des zentralen Gehirns, hervorgerufen werden kann. Dies weist darauf hin, dass die Integrit{\"a}t verschiedener neuronaler Netzwerke/Gehirnbereiche erforderlich ist, um wildtypische Aggression zu erm{\"o}glichen. Zus{\"a}tzlich konnte (5) anhand von Mutationen in zwei Genen der Oktopaminsynthese, die beide die Oktopamin-Konzentration zwar erniedrigen, die Tyramin-Konzentration jedoch heben bzw. senken, demonstriert werden, dass Oktopaminmangel Aggression fast vollst{\"a}ndig zum Erliegen bringt. Wird ein lunge durchgef{\"u}hrt, so ist dessen Ausf{\"u}hrung fast wildtypisch. Rettungsversuche, in denen Oktopamin- und/oder Tyramin-Konzentrationen wiederhergestellt werden, legen nahe, dass ein sehr spezifisches Muster von Oktopamin r{\"a}umlich und zeitlich gew{\"a}hrleistet sein muss, um ein so komplexes und faszinierendes Verhalten wie die Aggression in Drosophila hervorzurufen.}, subject = {Biogene Amine}, language = {en} } @phdthesis{Gromova2007, author = {Gromova, Kira V.}, title = {Visualization of the Smad direct signaling response to Bone Morphogenetic Protein 4 activation with FRET-based biosensors}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-25855}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2007}, abstract = {The Transforming Growth Factor (TGF) superfamily of cytokines and their serine/threonine kinase receptors play an important role in the regulation of cell division, differentiation, adhesion, migration, organization, and death. Smad proteins are the major intracellular signal transducers for the TGF receptor superfamily that mediate the signal from the membrane into the nucleus. Bone Morphogenetic Protein-4 (BMP-4) is a representative of the TGF superfamily, which regulates the formation of teeth, limbs and bone, and also plays a role in fracture repair. Binding of BMP-4 to its receptor stimulates phosphorylation of Smad1, which subsequently recruits Smad4. A hetero-oligomeric complex consisting of Smad1 and Smad4 then translocates into the nucleus and regulates transcription of target genes by interacting with transcription factors. Although the individual steps of the signaling cascade from the receptor to the nucleus have been identified, the exact kinetics and the rate limiting step(s) have remained elusive. Standard biochemical techniques are not suitable for resolving these issues, as they do not offer sufficiently high sensitivity and temporal resolution. In this study, advanced optical techniques were used for direct visualization of Smad signaling in live mammalian cells. Novel fluorescent biosensors were developed by fusing cyan and yellow fluorescent proteins to the signaling molecules Smad1 and Smad4. By measuring Fluorescence Resonance Energy Transfer (FRET) between the two fluorescent proteins, the kinetics of BMP/Smad signaling was unraveled. A rate-limiting delay of 2 - 5 minutes occurred between BMP receptor stimulation and Smad1 activation. A similar delay was observed in the complex formation between Smad1 and Smad4. Further experimentation indicated that the delay is dependent on the Mad homology 1 (MH1) domain of Smad1. These results give new insights into the dynamics of the BMP receptor - Smad1/4 signaling process and provide a new tool for studying Smads and for testing inhibitory drugs.}, subject = {FRET}, language = {en} } @phdthesis{Osswald2007, author = {Osswald, Peter Uwe}, title = {Perylene Bisimide Atropisomers : Synthesis and Optical and Chiroptical Properties}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-23248}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2007}, abstract = {Zur Herstellung von atropo-enantiomeren Perylenbisimiden wurde die kovalente Verkn{\"u}pfung von Aryloxysubstituenten durch Makrocyclisierung eingesetzt. Die Darstellung makrocyclischer Perylenbisimide erfolgte ausgehend von einem vierfach (3-Hydroxyphenoxy)-funktionalisierten Perylenbisimid mit achiralen 2,6-Diisopropylphenylsubstituenten an den Imidpositionen durch Williamsonsche Ethersynthese. Die Synthese konnte f{\"u}r vier unterschiedliche Oligoethylenglykol-Kettenl{\"a}ngen realisiert werden, wobei f{\"u}r jede Br{\"u}ckenl{\"a}nge jeweils zwei regioisomere Makrocyclen, n{\"a}mlich das diagonal verbr{\"u}ckte (1,7- und 6,12-Verk{\"u}pfung) und das seitlich verbr{\"u}ckte Isomer (1,12- und 6,7- Verkn{\"u}pfung), isoliert werden konnten. Die strukturelle Zuordnung der isolierten Makrocyclen zu einem der beiden Regioisomeren gelang zweifelsfrei anhand von R{\"o}ntgenstrukturanalysen f{\"u}r zwei Makrocyclen und 1H NMR-Spektroskopie f{\"u}r alle Isomere. Der konformative Einfluß der Aryloxy-Substituenten auf die funktionenellen Eigenschaften dieser Farbstoffklasse konnte durch Vergleich der optischen und elektrochemischen Eigenschaften aller isolierter Makrocyclen mit einer offenkettigen Referenzverbindung abgeleitet werden. Hierbei zeigte sich, dass die Aryloxy-Substituenten dieser Farbstoffe in L{\"o}sung bevorzugt in einer horizontalen Konformation vorliegen. Durch l{\"o}sungsmittelabh{\"a}ngige Fluoreszenzmessungen konnte gezeigt werden, dass ein photoinduzierter Elektronentransferprozess f{\"u}r die Fluoreszenzl{\"o}sung elektronenreicher Aryloxy-Substituenten von Bedeutung ist. Die Trennung der Atropo-Diastereomere konnte f{\"u}r eine diagonal {\"u}berbr{\"u}ckte makrocyclische Verbindung mit chiralen 2-(R)-Octylamin Imidsubstituenten und Diethyleneglykol als Br{\"u}ckenkette mittels semi-preparativer HPLC an einer chiralen station{\"a}ren Phase realisiert werden. Die chiroptischen Eigenschaften der isolierten epimerenreinen Makrocyclen wurden mittels CD-Spektroskopie untersucht. Die Zuordnung der absoluten Stereochemie konnte anhand der erhaltenen CD-Spektren durch Anwendung der „Theorie der excitonischen Kopplung" abgeleitet und durch quantenchemische Berechnung der CD-Spektren best{\"a}tigt werden. Dieses Synthesekonzept wurde auf 1,7-diaryloxy-substituierten Perylenbisimide erweitert. Die Struktur der erhaltenen diagonal verbr{\"u}ckten monocyclischen Verbindung konnte erneut durch NMR-Spektroskopie und R{\"o}ntgenstrukturanalyse eindeutig bestimmt werden. Die Trennung der Atropo-Enantiomere gelang mittels semi-preparativer HPLC an einer chiralen station{\"a}ren Phase. Die Zuordnung der Stereochemie konnte anhand des Vergleichs der CD-Spektren mit den zuvor f{\"u}r epimerenreine Bismakrocyclen erhaltenen CD-Spektren realisiert werden. Anhand der R{\"o}ntgenstrukturanalysen sowohl der racemischen Mischung als auch eines Atropo-Enantiomers ließen sich bedeutende Informationen {\"u}ber die p-Dimerisierung von Perylenbisimiden ableiten. Die Abh{\"a}ngigkeit der Razemisierungsbarriere von der Gr{\"o}ße der Bay-Substituenten wurde f{\"u}r vier halogensubstituierte Derivate untersucht. Die dynamischen Eigenschaften wurden mittels temperaturabh{\"a}ngiger NMR-Spektroskopie und kinetischer Messungen mittels CD-Spektroskopie bestimmt. Unter Anwendung des „Apparent Overlap"-Konzeptes konnte eine {\"u}berzeugende lineare Beziehung zwischen der Gr{\"o}ße der Substituenten und der Inversionsbarriere hergestellt werden. Dar{\"u}ber hinaus war es m{\"o}glich die Atropo-Diastereomere bzw. Enantiomere der tetrachlor- und tetrabrom-substituierten Derivate zu trennen, wobei vor allem das 1,6,7,12-tetrabrom-substituierte Perylenbisimid stabile Enantiomere bei Raumtemperatur lieferte. Die abgeleitete Struktur-Eigenschaftsbeziehung sollte zuk{\"u}nftig die Herstellung von stabilen Enantiomeren durch geeignete Wahl der Substituenten in den Bay-Positionen erm{\"o}glichen. Um die Reversibilit{\"a}t der Selbstorganisation zur quantitativen Synthese makrocyclischer Perylenbisimide ausn{\"u}tzen zu k{\"o}nnen, wurde ein tetra(zinkporphyrin)-funktionalisiertes Perylenbisimid synthetisiert. Die Ausbildung des angestrebten 1:2-Sandwichkomplexes aus Tetra-Zinkporphyrin-Perylenbisimid und Diazabicyclo-[2.2.2]-undecan wurde mittels UV/Vis und 1H NMR Spektroskopie untersucht und die makrocyclische Struktur des Komplexes konnte mittels diffusionsabh{\"a}ngiger NMR Spektroskopie (DOSY NMR) eindeutig bewiesen werden. Weiterhin konnte mittels rasterkraftmikroskopischer (AFM) Untersuchungen gezeigt werden, dass diese funktionellen makrocyclischen Verbindungen sehr geordnet auf einer Graphitoberfl{\"a}che (HOPG) abgeschieden werden k{\"o}nnen. Die Ausrichtung eines amino-funktionalsierten p-konjugierten Polymers durch Zugabe des bichromphoren Tetra-Zinkporphyrin-Perlyenbisimids wurde mittels UV/Vis-Spektroskopie und AFM-Messungen untersucht. Die Oberfl{\"a}chenanalyse mittels AFM zeigte, dass die bichromophore Verbindung die linearen p-konjugierten Polymere {\"u}ber weite Teile der Oberfl{\"a}che auszurichten vermag, so dass eine definierte Anordnung von drei p-Systemen auf der Graphitoberfl{\"a}che erm{\"o}glicht wurde.}, language = {en} } @phdthesis{Vernaleken2007, author = {Vernaleken, Alexandra}, title = {Identification and Characterisation of the Domains of RS1 (RSC1A1) Inhibiting the Monosaccharide Dependent Exocytotic Pathway of Na+-D-Glucose Cotransporter SGLT1 with High Affinity}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-25790}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2007}, abstract = {Das RS1-Protein, das durch ein intronloses single-copy Gen kodiert wird, welches nur bei S{\"a}ugetieren vorkommt, bewirkt eine posttranskriptionelle Herunterregulation des Natrium-D-Glukose-Cotransporters SGLT1. Es wurde gezeigt, dass eine kurzfristige posttranskriptionelle Hemmung von SGLT1 durch RS1 am trans-Golgi-Netzwerk (TGN) stattfindet. In der vorliegenden Arbeit wurden zwei Tripeptide des menschlichen RS1-Proteins (hRS1) identifiziert, GlnCysPro und GlnSerPro, welche die posttranskriptionelle Hemmung von SGLT1 am TGN induzieren. Das Applizieren der Tripeptide reduzierte die Menge des SGLT1-Proteins in der Plasmamembran um 40-50\%, diese Reduktion korrelierte mit dem R{\"u}ckgang des durch SGLT1 vermittelten Glukosetransports. Hinsichtlich der kurzfristigen Hemmung von SGLT1 durch die Tripeptide wurden f{\"u}r die effektiven intrazellul{\"a}ren Konzentration der Tripeptide IC50-Werte von 2.0 nM (GlnCysPro, QCP) und 0.16 nM (GlnSerPro, QSP) ermittelt. Die beobachtete Hemmung von SGLT1 durch die Tripeptide QCP und QSP wurde, {\"a}hnlich wie beim hRS1-Protein, durch verschiedene intrazellul{\"a}re Monosaccharide, einschließlich Methyl-\&\#945;-D-Glucopyranosid und 2-Deoxyglukose, verringert. Im Gegensatz dazu konnte die kurzfristige Hemmung von hOCT2 durch QCP nur nach Anhebung der intrazellul{\"a}ren Konzentration von AMG beobachtet werden. QCP und QSP werden durch den H+-Peptid-Kotransporter PEPT1 transportiert, der zusammen mit SGLT1 in den Enterozyten des D{\"u}nndarms kolokalisiert ist. Nach Einw{\"a}rtstransport des Peptids wird dann im Anschluss der durch hSGLT1 vermittelte Glukosetransport gehemmt. Die Daten legen nahe, dass eine orale Applikation der Tripeptide QCP oder QSP dazu genutzt werden kann, die Absorption von D-Glukose im D{\"u}nndarm zu hemmen und somit als Therapeutika f{\"u}r Adipositas oder Diabetes mellitus genutzt werden k{\"o}nnte.}, subject = {Regulation von SGLT1}, language = {en} } @phdthesis{Liedtke2007, author = {Liedtke, Daniel}, title = {Functional divergence of Midkine growth factors : Non-redundant roles during neural crest induction, brain patterning and somitogenesis}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-25707}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2007}, abstract = {Neural crest cells and sensory neurons are two prominent cell populations which are induced at the border between neural and non-neural ectoderm during early vertebrate development. The neural crest cells are multipotent and highly migratory precursors that give rise to face cartilage, peripheral neurons, glia cells, pigment cells and many other cell types unique to vertebrates. Sensory neurons are located dorsally in the neural tube and are essential for sensing and converting environmental stimuli into electrical motor reflexes. In my PhD thesis, I obtained novel insights into the complex processes of cell induction at the neural plate border by investigating the regulation and function of mdkb in zebrafish. First, it was possible to demonstrate that mdkb expression is spatiotemporally correlated with the induction of neural crest cells and primary sensory neurons at the neural plate border. Second, it became evident that the expression of mdkb is activated by known neural crest cell inducing signals, like Wnts, FGFs and RA, but that it is independent of Delta-Notch signals essential for lateral inhibition. Knockdown experiments showed that mdkb function is necessary for induction of neural crest cells and sensory neurons at the neural plate border, probably through determination of a common pool of progenitor cells during gastrulation. The present study also used the advantages of the zebrafish model system to investigate the in vivo function of all midkine gene family members during early brain development. In contrast to the situation in mouse, all three zebrafish genes show distinct expression patterns throughout CNS development. mdka, mdkb and ptn expression is detected in mostly non-overlapping patterns during embryonic brain development in the telencephalon, the mid-hindbrain boundary and the rhombencephalon. The possibility of simultaneously knocking down two or even three mRNAs by injection of morpholino mixtures allowed the investigation of functional redundancy of midkine factors during brain formation. Knockdown of Midkine proteins revealed characteristic defects in brain patterning indicating their association with the establishment of prominent signaling centers such as the mid-hindbrain boundary and rhombomere 4. Interestingly, combined knockdown of mdka, mdkb and ptn or single knockdown of ptn alone prevented correct formation of somites, either by interfering with the shifting of the somite maturation front or interferance with cell adhesion in the PSM. Thus, Ptn was identified as a novel secreted regulator of segmentation in zebrafish.}, subject = {Zebrab{\"a}rbling}, language = {en} } @phdthesis{Gupta2007, author = {Gupta, Kapuganti Jagadis}, title = {Nitric oxide in plants: Investigation of synthesispathways and role in defense against avirulent Pseudomonas}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-25545}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2007}, abstract = {Die Zahl der physiologischen Prozesse in Pflanzen, die scheinbar durch NO reguliert werden, hat in den letzten Jahren stark zugenommen. NO {\"u}bernimmt wichtige Rollen f{\"u}r die Steuerung von Wachstum und Entwicklung, f{\"u}r die Pathogenresistenz und bei abiotischem Stress, sowohl in unterirdischen als auch in oberirdischen Organen. In Pflanzen wurden bisher eine Reihe verschiedener enzymatischer und einige wenige nichtenzymatische Synthesewege f{\"u}r NO vorgeschlagen. Das Hauptziel dieser Arbeit bestand nun darin, die NO Produktion von Pflanzen und speziell von Wurzeln m{\"o}glichst quantitativ zu erfassen und die beteiligten Enzyme zu identifizieren. Dieses Ziel sollte vor allem durch Chemilumineszenz-Messung von NO in der Gasphase (= direkte Chemilumineszenz) erreicht werden, aber auch durch die indirekte Chemilumineszenz, bei welcher Spuren von NO-Oxidationsprodukten wie Nitrat und Nitrit erfasst werden. Als Versuchspflanzen wurden verwendet: Wildtypen von Nicotiana tabacum cv. Xanthi oder cv. Gatersleben; Nitratreduktase-freie, auf Ammonium-N angezogene Mutanten, die keine Nitratreduktase (NR) induzieren; WT Pflanzen, die auf Wolframat angezogen wurden um die Synthese funktionaler MoCo-Enzyme zu unterbinden; eine NO-{\"u}berproduzierende, Nitritreduktase (NiR)-freie Transformante, sowie gelegentlich Gerste, Reis und Erbsen. Eine hypersensitive Reaktion (HR) von Tabak wurde erzeugt durch Druckinfiltration von avirulenten Bakterien des Stammes Pseudomonas syringae pv. phaseolicola. Bei Sauerstoffkonzentrationen \&\#8804;1\% wurde exogenes Nitrit auch von v{\"o}llig NR-freien Wurzeln zu NO reduziert. Folglich war NR nicht die einzige NO-Quelle von Wurzeln. Im Gegensatz dazu waren NR-freie Blattstreifen nicht in der Lage, Nitrit zu NO umzusetzen. Die NO-Bildung von Wurzeln wurde außerdem durch Hemmstoffe des mitochondrialen Elektronentransportes, Myxothiazol und Salicylhydroxams{\"a}ure (SHAM) gehemmt, w{\"a}hrend die NO-Produktion von NR-exprimierenden Blattstreifen gegen diese Inhibitoren unempfindlich war. Damit stimmte auch {\"u}berein, dass gereinigte Mitochondrien aus Wurzeln, aber nicht die aus Bl{\"a}ttern Nitrit mit Hilfe von NADH zu NO reduzieren konnten. Die Inhibitor-Wirkung l{\"a}sst darauf schließen, dass in Wurzelmitochondrien beide terminalen Oxidasen and der NO-Bildung beteiligt sind, und dass selbst in NR-haltigen Wurzeln ein großer Teil der Reduktion von Nitrit zu NO durch die Mitochondrien bewerkstelligt wird, und weniger durch NR selbst. Die Unterschiedliche F{\"a}higkeit von Blatt-und Wurzelmitochondrien zur anaeroben Nitrit:NO-Reduktion wurde nicht nur bei Tabak, sondern auch bei Arabidopsis, Gerste und Erbse gefunden. Sie scheint also eine generelle Eigenschaft h{\"o}herer Pflanzen zu sein. Die Nitrit:NO Reduktion wurden auch direkt als Nitrit- bzw. NADH-Verbrauch gemessen. Die Reaktion war außerdem exklusiv mit der Membranfraktion der Mitochondrien assoziert, ohne jede Beteiligung von Matrixkomponenten. Es wurde auch gepr{\"u}ft, ob Wurzelmitochondrien und- gereinigte Membranen NO ausschließlich aus Nitrit produzierten, oder eventuell auch {\"u}ber eine NO-Synthase (NOS). Außerdem wurde untersucht, ob und in welchem Umfang die NO-Messungen durch eine NO-Oxidation verf{\"a}lscht werden konnten. Zus{\"a}tzlich zur Chemilumineszenz wurden Fluoreszenzmessungen mit Diaminofluoreszeinen (DAF) zum Vergleich herangezogen. In Luft produzierten Mitochondrien ja kein Nitrit-abh{\"a}ngiges NO, und eine NOS-Aktivit{\"a}t konnte weder durch direkte noch durch indirekte Chemilumineszenz nachgewiesen werden. Mit DAF-2 oder DAR-4M wurde jedoch eine L-Arginin-abh{\"a}ngige Fluoreszenzerh{\"o}hung beobachtet. Diese scheinbare NOS-Aktivit{\"a}t wurde mit kommerzieller iNOS verglichen und zeigte dabei sehr untypische Antworten auf NOS-Inhibitoren, Substrate und Kofaktoren. Sie wird deshalb als Artefakt beurteilt. Bei Verwendung von iNOS wurden ca. 2/3 des insgesamt produzierten NO zu (Nitrit+Nitrat) oxidiert. Mitochondrien scheinen NO zu verbrauchen, ohne jedoch die Oxidation von NO zu (Nitrit+Nitrat) zu erh{\"o}hen. Vermutlich wird dabei ein fl{\"u}chtiges Intermediat gebildet (eventuell N2O3). In unserer Gruppe wurde k{\"u}rzlich gezeigt, dass der pilzliche Elicitor Cryptogein eine hypersensitive Reaktion (HR) bei Tabak hervorrief, die v{\"o}llig unabh{\"a}ngig von der Gegenwart oder Abwesenheit von NR war. Eine Schlussfolgerung daraus war, dass die NR-abh{\"a}ngige NO-Bildung f{\"u}r die HR keine Rolle spielte. Hier pr{\"a}sentieren wir Hinweise darauf, dass dieses Szenario Cryptogein-spezifisch sein k{\"o}nnte. Pseudomonas syringae pv phaseolicola wurde in Tabakbl{\"a}tter des Wildtyps und derNiR-defizienten, NO-{\"u}berproduzierenden Mutante (clone 271) infiltriert, die entweder auf Ammonium oder auf Nitrat angezogen waren. Es wurde die Entwicklung der L{\"a}sionen, das Bakterienwachstum und die Zuckerkonzentrationen in den Bl{\"a}ttern und im Blattapoplasten verfolgt. Die L{\"a}sionen-Entwicklung war positiv, und das Bakterienwachstum negativ korreliert mit der Nitrat-Ern{\"a}hrung und einer eventuellen NO-Produktion. Das Bakterienwachstum war positiv korreliert mit einer Ammonium-Ern{\"a}hrung und mit apoplastischen Zuckerkonzentrationen. Der Gesamtgehalt an freier + konjugierter Salicyls{\"a}ure (SA) war durch bakterielle Infektion immer drastisch gesteigert, aber ohne klare Korrelation mit einer NO-Produktion. In Gegenwart von Cryptogein war das Wachstum von Pseudomonas fast v{\"o}llig gehemmt. Diese Beobachtungen deuten darauf hin, dass die vermutete gegenseitige Abh{\"a}ngigkeit von Bakterienwachstum, NO-Produktion und der HR sehr komplex ist und nicht auf einfache unifaktorielle Beziehungen reduziert werden kann.}, subject = {Pflanzen}, language = {en} } @phdthesis{Selle2007, author = {Selle, Reimer Andreas}, title = {Adaptive Polarization Pulse Shaping and Modeling of Light-Matter Interactions with Neural Networks}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-25596}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2007}, abstract = {The technique of ultrafast polarization shaping is applied to a model quantum system, the potassium dimer. The polarization dependence of the multiphoton ionization dynamics in this molecule is first investigated in pump-probe experiments, and it is then more generally addressed and exploited in an adaptive quantum control experiment utilizing near-IR polarization-shaped laser pulses. The extension of these polarization shaping techniques to the UV spectral range is presented, and methods for the generation and characterization of polarization-shaped laser pulses in the UV are introduced. Systematic scans of double-pulse sequences are introduced for the investigation and interpretation of control mechanisms. This concept is first introduced and illustrated for an optical demonstration experiment, and it is then applied for the analysis of the intrapulse dumping mechanism that is observed in the excitation of a large dye molecule in solution with ultrashort laser pulses. Shaped laser pulses are employed as a means for obtaining copious amounts of data on light-matter interactions. Neural networks are introduced as a novel tool for generating computer-based models for these interactions from the accumulated data. The viability of this approach is first tested for second harmonic generation (SHG) and molecular fluorescence processes. Neural networks are then utilized for modeling the far more complex coherent strong-field dynamics of potassium atoms.}, subject = {Lasertechnologie}, language = {en} } @phdthesis{TraversMartin2007, author = {Travers-Martin, Nora Verena}, title = {The role of the glucosinolate-myrosinase system for the interaction of Brassicaceae with the turnip sawfly Athalia rosae(L.)}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-25335}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2007}, abstract = {Brassicaceae and a few related plant families are characterized by possession of the glucosinolate-myrosinase system. Glucosinolates are amino-acid derived allelochemicals which are hydrolysed upon tissue damage by myrosinase enzymes to produce various degradation products which can be toxic for generalist insects. The larvae of the crucifer-specialist Athalia rosae, the turnip sawfly, sequester glucosinolates into their haemolymph. The role of the glucosinolate-myrosinase system for the interaction of the turnip sawfly with Brassicaceae was examined in this study from two different perspectives: variation within individual plants and between plant species. The plant responses to the feeding by herbivores and the short-term effects this induction had on insect behaviour were investigated in white mustard. Furthermore, plants can use multiple defences. Hence correlations of glucosinolates and myrosinase activities with other defences and nutritional quality and their long-term effects on the development of the insects were investigated in seven different plant species.}, subject = {Glucosinolate}, language = {en} } @phdthesis{Holzapfel2007, author = {Holzapfel, Marco}, title = {Photoinduced Charge Transfer Processes in Triarylamine Based Redox Cascades}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-25276}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2007}, abstract = {In the first part of this work a new approach to measure transient absorption spectra of fluorescent compounds by means of laser flash photolysis technique was presented. Generally, the recorded transient absorption signal consists of transient absorption, fluorescence and ground state bleaching. Thus, for fluorescent chromophores a fluorescence correction is indispensable in order to obtain undisturbed absorption decay curves as well as accurate transient absorption spectra. Due to time response characteristics of the PMT detector the fluorescence contribution cannot be corrected by recording the fluorescence separately. Measuring two transient absorption signals with probe light differing in intensity, compounds with quantum yields up to ~ 35 \% can be investigated. This is a major improvement because transient absorption spectroscopy is a powerful method to gain insight into the kinetics and the energy of excited states and information in the time domain of fluorescence are no longer lost. In the second part the synthesis and the photophysical characterisation of redox cascades were reported. These cascades consist of an acridine acceptor and up to three triarylamine donor subunits. The redox potentials of the triarylamines were tuned by adequate substituents in the para-position of the phenyl ring to ensure a directed redox gradient. Upon photoexcitation a locally excited state or a CT state is populated which then injects a hole onto the adjacent donor and consequently results in a CS state. Fluorescence and transient absorption measurements revealed that HT depends strongly on donor strength and solvent polarity. Formation of a CS state was only observed in case of strong terminal donors or polar solvents. A low lying localised triplet state acts as an energy trap and quenches all CS states even in case of the cascade with the strongest terminal donor in very polar solvents. Furthermore, population of a CS state catalyses the formation of this triplet states which results in a shorter lifetime of the CS state compared to the lifetime of the CT state of the corresponding reference compound. Compared to redox cascades already reported in literature, the electronic coupling between the redox centres was decreased by sterical as well as electronic effects. To prolong the lifetime of the CS state saturated spacers on the one hand and a perpendicular orientation of the acceptor and the adjacent donor on the other hand were selected. The twisting of the subunits forming the CT state results in a higher degree of charge separation but its contribution to increase the lifetimes of the CS states is of minor importance. The longer lifetime of the CS states can be ascribed to the saturated spacers. Experimental data in combination with calculated values indicate that charge recombination takes place in the Marcus normal region by a superexchange mechanisms. Although charge recombination of the known cascades is located in the Marcus inverted region, these CS states decay faster than the CS states of the compounds investigated in this work.}, subject = {Ladungstransfer}, language = {en} } @phdthesis{RinconOrozco2007, author = {Rinc{\´o}n Orozco, Bladimiro}, title = {TCR and CO-receptors mediated activation of V gamma 9V delta 2 T cells}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-24902}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2007}, abstract = {A small percentage (1-5\%) of the blood lymphocytes expresses alternative T-cell antigen receptor that uses g and d TCR rearranging genes. A subset of them expresses the Vg9Vd2 TCR. Those cells respond to self-nonpeptide and foreign antigens presented by unknown antigen-presenting molecules. Vg9Vd2 T cells also express Toll-like receptors and natural killer receptors that allow them to respond to other nonpeptide microbial components or to alterations in the expression of stress cell surface ligands such as NKG2D ligands. Vg9Vd2 T cells frequently are regulated by the expression of activating and/or inhibitory NKRs (iNKRs) that can fine-tune their activation threshold and the activating NKG2D receptor is one of the most studied until now. NKG2D, a C-type lectin receptor directed against MICA/MICB and UL16-binding protein (ULBP) molecules, have been reported a powerful co-stimulus for Ag-mediated activation of CD8 and Vg9Vd2 T cells. Indeed, NKG2D is recruited within the Vg9Vd2 TCR immunological synapse and enhances recognition by Vg9Vd2 T cells of Mycobacteria-infected DCs and various MICA/MICB or ULBP hemopoietic and non-hemopoietic tumors. The level of NKG2D is upregulated by inflammatory cytokines (e.g. IL-15), and NKG2D ligands are induced after a physical or genotoxic stress and/or along infection by intracellular pathogens. Therefore, NKG2D is a key stress sensor that strongly enhances recognition of altered or infected self by human gd T cells. Recent progress in the field supports the idea that gd T cells fulfill a role in the innate and adaptative immune response in different way of the conventional ab T cells. We demonstrated direct activation of Vg9Vd2 T cells by NKG2D ligation through the association with DAP10 adapter molecules and independently of TCR-Ag recognition, similar to the NKG2D-mediated activation of NK cells. Culture of peripherical blood mononuclear cells with immobilized NKG2D mAb or NKG2D ligand MICA induces up-regulation of CD69 and CD25 in NK and Vg9Vd2 T cells but not in CD8 T cells. Additionally, the ligation of NKG2D induces in Vg9Vd2 T cells the up-regulation of molecules typical for antigenpresenting cells, such as co-stimulator molecules (CD86) antigen presenting molecules (CD1a, HLA-DR), adhesion molecules (CD54), and activation molecules (CD69). Furthermore, NKG2D ligation in Vg9Vd2 T cells induces the production of cytokines such as TNF-a and chemokines such as, MIP-1a, but cannot induce the production of cytokines such as IL-6 or IFN-g and chemokines such as RANTES, MCP-1 and GM-CSF. In addition, NKG2D triggers the activation of the cytolytic machinery as efficient as CD3 stimulation as shown by measurement of the release of granules with esterase activity (BLT assay), perforin and the up-regulation of CD107a on the surface of Vg9Vd2 T cells. This NKG2D dependent cytolysis has been confirmed using purified Vg9Vd2 T cells, which kill MICA-transduced RMA cells but not the control cells. The TCR independence and NKG2D dependence of this killing is supported by mAb inhibition experiment. Finally, DAP 10, which mediates NKG2D signaling of human NK cells, is found in resting and activated Vg9Vd2 T cells. Moreover, data of intracellular signaling studies suggest an important role of Scr kinases in the NKG2D mediated killing and involvement of DAP-10-PI3K and PLCg 1 pathways as mayor proteins implicated in target cell lysis, and shows remarkable difference with the TCR signaling. The identification of these similarities in NKG2D function between NK and Vg9Vd2 T cells may be of interest for development of new strategies for Vg9Vd2 T cell-based immunotherapy in certain types of cancer and help to understand Vg9Vd2 T cell function in general.}, subject = {TCR}, language = {en} } @phdthesis{Palanichamy2007, author = {Palanichamy, Arumugam}, title = {Influence of transient B cell depletion on recirculating B cells and plasma cells in rheumatoid arthritis}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-25132}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2007}, abstract = {Die zentrale Rolle der B-Zellen in der Pathogenese von Autoimmunerkrankungen hat in den letzten Jahren zu unterschiedlichen therapeutischen Ans{\"a}tzen gef{\"u}hrt, B-Zellen direkt oder indirekt zu targetieren. Ein Beispiel hierf{\"u}r stellt der monoklonale anti-CD20 Antik{\"o}rper Rituximab dar. Derzeit ist wenig {\"u}ber das Regenerationsverhalten von B-Zellen nach Therapie mit Rituximab bekannt. Daher untersuchten wir die fr{\"u}he Regnerationsphase und die Ver{\"a}nderungen des B-Zellrepertoirs. Am Beispiel der VH4 Familie der Immunglobulin schweren Ketten analysierten wir die Modulation des Immunglobulinrezeptor Repertoires durch die passagere B-Zelldepletion. Insgesamt wurden bei 5 Patienten 3 Zeitpunkte analysiert: vor Therapie, in der fr{\"u}hen Regenerationsphase (ERP- early regeneration period, mit einem B-Zellanteil > 1\% im peripheren Blut) und in der sp{\"a}ten Regenerationsphase (LRP- late regeneration period, 2-3 Monate nach der fr{\"u}hen Regenerationsphase). Bei 3 Patienten (A-C) wurden die Ig-VH4 Gene aus genomischer DNA amplifiziert und zu o.g. Zeitpunkten analysiert. Bei weiteren 2 Patienten (D und E) erfolgte die Analyse der Ig Gene in einzelnen B-Zellen mittels Einzelzellsortierung und Einzelzell RT-PCR. Die B-Zellregeneration nach Therapie mit Rituximab zeigte ein charakteristisches Regenerationsmuster mit einer Dominanz von unreifen CD10+ B-Zellen und CD38hi Plasmazellen w{\"a}hrend der fr{\"u}hen Phase der B-Zellrekonstitution. Im weiteren Verlauf kam es zu einer Abnahme dieser Zellen und einem Anstieg von naiven B-Zellen. Auf der molekularen Ebene zeigte sich vor und nach B-Zelldepletion eine unterschiedliche Nutzung der Ig-VH4 Gene. Mini Gene wie VH4-34 und VH4-39, die in Verbindung mit Autoimmunit{\"a}t stehen, waren vor Einleitung der Therapie {\"u}berexprimiert. Durch die Behandlung mit Rituximab kam es zu einer Ver{\"a}nderung des Repertoires der regenerierenden B-Zellen mit einer reduzierten Benutzung der VH4-39 Gene im B-Zellpool. Tief greifende Ver{\"a}nderungen fanden sich im regenerierenden Repertoire, mit einem relativen Anstieg von stark mutierten (>=9 Mutationen / Ig Sequenz) B-Zellen.. Die Immunph{\"a}notypisierung zeigte, dass diese hochmutierten B-Zellen den Ig-klassengeswitchten Ged{\"a}chtnis B-Zellkompartiment, insbesondere den Plasmazellen zugh{\"o}rig sind. Um diese Hypothese zu untermauern, erfolgte bei 2 Patienten eine Einzelzellsortierung dieser Plasmazellen w{\"a}hrend der fr{\"u}hen Regenerationsphase, welche einen vergleichbaren Mutationsstatus zeigte. Da Plasmazellen kein CD20 Molek{\"u}l exprimieren, werden sie durch eine Therapie mit Rituximab nicht direkt eliminiert. Allerdings zirkulieren sie nicht im peripheren Blut w{\"a}hrend der Phase der B-Zelldepletion. W{\"a}hrend der fr{\"u}hen Regenerationsphase (ERP) lassen sie sich in der Peripherie erneut nachweisen. Es wurde deshalb untersucht ob auch Plasmazellen durch die Therapie moduliert werden, obwohl sie nicht direkt durch Rituximab targetiert werden. In diesem Zusammenhang erfolgte eine detaillierte Analyse des Mutationsmusters der Plasmazellen vor Therapie und w{\"a}hrend der fr{\"u}hen Regenerationsphase. Die Analyse der Mutationsh{\"a}ufigkeit in RGYW/WRCY Hotspot Motive (R=purine, Y=pyrimidine, W=A/T) erlaubt Absch{\"a}tzung in wieweit die somatische Hypermutation der B-Zellen durch T-Zell abh{\"a}ngige Differenzierung erfolgte. Die Plasmazellen vor Therapie zeigten einem verminderten Targeting der RGYW/WRCY Motive. Im Gegensatz hierzu zeigte sich in den rezirkulierenden Plasmazellen w{\"a}hrend der fr{\"u}hen Regenerationsphase ein zunehmendes Targeting der RGYW/WRCY Motive. Dies spricht f{\"u}r einen Repertoire Shift zu mehr T-Zellabh{\"a}ngigen B-Zell Mutation. Ein Zusatand, wie er bei Gesunden beobachtet wird. Um die Hypothese der Rituximab-induzierten Plasmazell Modulation zu st{\"u}tzen wurde die R/S- Ratio (replacement to silent mutations ratio) der hypervariablen Regionen (CDRs) der Plasmazell Ig Sequenzen bestimmt. In unserer Studie war die mittlere R/S Ratio der CDRs der Plasmazellen vor Therapie entsprechend relativ niedrig (1.87). Interessanterweise kam es in der fr{\"u}hen und sp{\"a}ten Regenerationsphase zu einer signifikant erh{\"o}hten R/S Ration in den rezirkulierenden Plasmazellen mit Werten von 2.67 bzw. 3.60. Die verminderte R/S Ratio in den CDRs der Plasmazellen kann als Entwicklung des Ig-Repertoires durch positive Antigenselektion interpretiert werden und weist damit eine Therapie induzierte Ver{\"a}nderung auf, die dem entspricht wie man sie bei Gesunden findet. Zusammenfassend zeigt unsere Studie, dass die passagere B-Zelldepletion mit Rituximab zu einer Modulation des Plasmalzellkompartimentes f{\"u}hrt, welches nicht direkt durch die Therapie targetiert wird. Die Modulation der Plasmazellen bei der RA kann eventuell auch als m{\"o}glicher Biomarker entwickelt werden, um ein Ansprechen auf die Therapie vorherzusagen. Dies muss im Weiteren untersucht werden, um tiefer greifende Einblicke in Prozesse zu erlangen, die durch zuk{\"u}nftige Therapien beeinflussbar werden.}, subject = {B-zellen}, language = {en} } @phdthesis{Kluever2007, author = {Kl{\"u}ver, Nils}, title = {Molecular analysis of gonad development in medaka (Oryzias latipes) and Oryzias celebensis}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-25105}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2007}, abstract = {The process of sex-determination can be better understood through examinations of developing organs and cells, which are involved in the formation of undifferentiated gonad. This mechanisms show in fish a broad variety, ranging from hermaphroditism to gonochorism and environmental to genetic sex determination. Hormones and abiotic factors such as temperature and pH can influence teleost development and reproductive traits. These factors are vulnerable to pollutants and climate changes. Therefore, it is important to examine gonad development and sex-determination/differentiation in teleost fish. Teleost fish are the largest known group of vertebrates with approximately 25,000 species and are used for such kind of examinations as model organisms. Recently, in Oryzias latipes (medaka), dmrt1bY (or dmy), a member of the Dmrt gene family, has been described as testis-determining gene. However, this gene is not the universal master sex-determining gene in teleost fish. Although dmrt1bY is present in the most closely related species of the genus, namely Oryzias curvinotous, it is absent from other Oryzias species, like Oryzias celebensis, and other fish. During my thesis, I studied gonad development in medaka and in the closely related species Oryzias celebensis. Germ cell specification in medaka seems to be dependent on maternally provided cytoplasmatic determinants, so called germ plasm. Nanos and vasa are such germ cell specific genes. In zebrafish they are asymmetrically localized in the early embryo. I have shown that nanos mRNA is evenly distributed in the early embryo of medaka. A similar pattern has been already described for the medaka vasa homolog, olvas. This suggests differences in PGC specification in zebrafish and medaka. Further, the vasa homolog was isolated and the expression pattern examined in O. celebensis. The results show that it can be used as a germ cell specific marker. Additionally, the primordial germ cell migration in O. celebensis was followed, which is similar to medaka PGC migration. Primordial germ cell migration in vertebrates is dependent on the chemokine stromal cell-derived factor 1 (Sdf-1). Medaka has two different sdf-1 genes, sdf-1a and sdf-1b. Both genes are expressed in the lateral plate mesoderm (LPM). During late embryonic development, I could show that sdf-1a is expressed in newly formed somites and not longer in the LPM. Sdf-1b expression persisted in the posterior part of the lateral plate mesoderm in the developing gonad. In terms of early and late functions, this suggests subfunctionalization of sdf-1a and sdf-1b. In "higher" vertebrates, genes that are involved in the process of gonad development have been studied in detail, e.g. Wt1, Sox9, and Amh. I have analyzed the expression pattern of wt1 and sox9 co-orthologs and amh. In both, the medaka and O. celebensis, wt1a transcripts were localized in the LPM and its expression was similar to sdf-1a gene expression in medaka. Wt1b expression was restricted to the developing pronephric region. During later embryonic development, wt1a is specifically expressed in the somatic cells of the gonad primordium in both sexes. This is the first time that in fish wt1 gene expression in developing gonads has been described. Therefore, this result suggests that wt1a is involved in the formation of the bipotential gonad. Furthermore, I have analyzed the gonad specific function of the wt1 co-orthologs in medaka. I could show that a conditional co-regulation mechanism between Wt1a and Wt1b ensures PGC maintenance and/or survival. The expression of sox9 genes in medaka and sox9b in O. celebensis were detected in the somatic cells of the gonad primordium of both sexes. Additionally, I have shown that amh and amhrII in medaka are expressed in somatic cells of the gonad primordium of both sexes. This suggests that sox9b, amh and amhrII are involved in gonad development and have specific functions in the adult gonad. In O. celebensis I could detect an expression of dmrt1 already six days after fertilization in half of the embryos, which is similar to the dmrt1bY expression in medaka. Whether the expression of dmrt1 is male specific in O. celebensis is currently under investigation. Altogether, the obtained results provide new insights into gene expression patterns during the processes of gonad development. Furthermore, no differences in the expression pattern of wt1a and sox9b during gonad development between the medaka and O. celebensis could be detected. This might indicate that the genetic mechanisms during gonad development are similar in both species.}, subject = {Japank{\"a}rpfling}, language = {en} } @phdthesis{Handoko2007, author = {Handoko, Lusy Lusiana}, title = {Functional Characterization of IGHMBP2, the Disease Gene Product of Spinal Muscular Atrophy with Respiratory Distress Type 1 (SMARD1)}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-24984}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2007}, abstract = {Spinale Muskelatrophie mit Atemnot Type 1 (SMARD1) ist eine autosomal rezessive, neurodegenerative Erkrankung, die sich h{\"a}ufig schon im S{\"a}uglings- und Kleinkindalter manifestiert. Pathologisches Merkmal von SMARD1 ist eine fr{\"u}he und akut einsetzende Atemnot und eine progrediente, zun{\"a}chst distal betonte Muskelschw{\"a}che, die durch eine L{\"a}hmung des Zwerchfells und der Skelettmuskulatur aufgrund des Absterbens der motorischen Vordernhornzellen des R{\"u}ckenmarks eintritt. SMARD1 ist eine monogene Krankheit, die durch Mutationen im Gen f{\"u}r das Immunoglobulin µ-bindende Protein 2" (IGHMBP2) hervorgerufen wird. Obwohl Mutationen in IGHMBP2 ausschließlich die Degeneration von Motoneuronen ausl{\"o}sen, ist das Gen bei Menschen und M{\"a}usen ubiquit{\"a}r exprimiert. Deshalb scheint SMARD1 durch den Defekt eines „Haushaltsproteins" statt eines Neuron-spezifischen Faktors verursacht zu werden. IGHMBP2 verf{\"u}gt {\"u}ber eine N-terminale DEXDc-Helicase/ATPase-Dom{\"a}ne und geh{\"o}rt zur Superfamily 1 Helicase. Bislang war lediglich bekannt, dass das Protein in verschiedenen zellul{\"a}ren Aktivit{\"a}ten wie DNA Replikation, Transkription und pr{\"a}-mRNA Splicing zugewiesen wurde. Die pr{\"a}zise Funktion von IGHMBP2 in den obengenannten Prozessen, und damit auch die molekulare Ursache von SMARD1 sind jedoch noch v{\"o}llig unklar. Das Ziel der vorliegenden Arbeit war es daher, das IGHMBP2 Protein sowohl enzymatisch zu charakterisieren als auch den Prozess zu identifizieren, in dem dieses Protein in vivo agiert. Mit diesem Wissen sollten dann pathogene Mutanten von IGHMBP2 auf Defekte hin untersucht werden. Ein Schl{\"u}ssel f{\"u}r diese Arbeit war die Gewinnung von rekombinantem, biologisch aktivem IGHMBP2 durch eine zweistufige Aufreinigungsstrategie. Dieses hochreine Enzym zeigte eine ATP-abh{\"a}ngige Helikaseaktivit{\"a}t, die sowohl doppelstr{\"a}ngige DNA als auch RNA mit einer 5'\&\#8594;3' Direktionalit{\"a}t entwindet. Interessanterweise zeigte sich, dass dieses Enzym -im Gegensatz zu fr{\"u}heren Befunden- nahezu ausschließlich im Zytoplasma von Zellen lokalisiert ist. Dar{\"u}ber hinaus wiesen die Affinit{\"a}tsaufreinigungsexperimente und Grossenfraktionierungsuntersuchungen daraufhin, dass IGHMBP2 ein Bestandteil des RNase-empfindlichen Komplexes ist, der als Ribosomen identifiziert wurde. IGHMBP2 interagiert prim{\"a}r mit 80S Monosomen, wobei das Protein mit beiden Untereinheiten in Kontakt steht. Hingegen ist IGHMBP2 an Polysomen nur in geringen Mengen zu finden. Diese Befunde deuten stark auf eine Rolle von IGHMBP2 bei der mRNA Verarbeitung am Ribosom hin, wobei noch unklar ist, ob es sich um translationsrelevante Prozesse handelt oder die mRNA-Stabilit{\"a}t beeinflusst. Die biochemische und enzymatische Charakterisierung von IGHMBP2 erlaubte erstmals Einblicke in den Pathomechanismus von SMARD1. In den folgenden Untersuchungen wurden die enzymatischen Aktivit{\"a}ten der SMARD1-erregenden Ighmbp2 Mutante und ihre Assoziation mit ribosomalen Untereinheiten nachgeforscht. Interessanterweise konnten pathogene Missense-Mutanten von IGHMBP2 noch genauso gut wie das Wildtyp-Protein mit ribosomalen Untereinheiten wechselwirken. Jedoch inhibierten alle bisher getesteten Mutanten die RNA Helikaseaktivit{\"a}t, allerdings {\"u}ber unterschiedliche Mechanismen. Diese Daten weisen darauf hin, dass ein Defekt in den enzymatischen Aktivit{\"a}ten des IGHMBP2 direkt mit der Pathogenese der SMARD1 korreliert. Des Weiteren lassen die im Rahmen dieser Arbeit erhaltenen Ergebnisse vermuten, dass SMARD1 durch Defekte in der zellularen Translationsmaschinerie entsteht.}, subject = {IGHMBP2}, language = {en} } @phdthesis{Andrei2007, author = {Andrei, Horia-Sorin}, title = {Infrared photodissociation spectroscopy of ionic hydrocarbons : microsolvation and protonation sites}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-24652}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2007}, abstract = {This work has presented a spectroscopic analysis of three types of hydrocarbon cations: two ionized aromatic hydrocarbons, two protonated aromatic hydrocarbons and the cation of a fundamental radical hydrocarbon. The experiments were centered on the proton stretch vibrations of mass-selected complexes of these systems and polar (H2O) and non polar (Ar, N2, CO2) ligands. The experiments have been done in a tandem mass spectrometer coupled with an electron impact ionization ion source; an OPO laser system was used as tunable IR light source. All the proposed dimer structures have been also modeled using quantum chemical calculations (QCC). These calculations have consistently been matched with the experimental results and have enabled clear identification of the spectral features observed. This has enabled the evaluation of thermochemical properties which could not be extracted directly from experiment. The experiments done on complexes of 1-Np+ and Im+ have allowed for the acidity of their various groups to be probed: the shifts in the frequency as well as the enhancement in the intensity of the OH and NH stretch vibrations resulting from the complexation have yielded dependences on both the species (L) and the number (n) of the ligands. OH bound 1-Np+···Ar has been detected for the first time, showing that the REMPI-IRPD method is severely limited with respect to the production of the most stable isomer of a given cationic complex. The detection of c-1-Np+···(N2)n corresponds to the first observation of c-1-Np+ complexes and enables thus direct comparison of both 1-Np+ rotamers. The shift of the NH vibration of Im+···N2(H) yielded the first experimental estimate for the PA of the imidazyl radical. It was also found that the most stable 1-Np+···Ar and Im+···Ar structures differ qualitatively from that of the corresponding neutral dimers (H-bound vs pi-bound), emphasizing the large impact of ionization on the interaction potential and the preferred recognition motif between acidic aromatic molecules (A) and nonpolar ligands. The IRPD spectra of 1-Np+···Ln and Im+···Ln yielded spectroscopic information about the CH, NH and OH stretch vibrations of bare 1-Np+ and Im+. The dependence of the shifts in the frequency of the OH and NH stretch vibrations allows for creating microsolvation models. The spectroscopic results obtained on size-selected 1-NpH+···Ln show that, in the output of the presently used ion source, three classes of 1-NpH+ isomers can be identified: oxonium ions (1-Np protonated at the O atom); carbenium ions obtained by protonation in the para and ortho positions with respect to the OH functional group; carbenium ions obtained by the addition of a proton to well-defined sites on the second naphthalene ring. The spectral identification of these three classes of protonation sites is supported by their different photofragmentation patterns. It was demonstrated that the spectroscopic monitoring of the microsolvation of ImH+ in Ar and N2 together with the QCCs paint a very detailed picture of the microsolvation process, evidencing clear differences between the microsolvation models as function of the PA of the ligands. Important differences have also been identified between the various binding sites, enabling the creation of a clear scale of priorities for occupation of the binding sites during microsolvation. The application of IRPD to the study of microhydrated ImH+ provided for the first time direct spectroscopic information on the properties of the N-H bonds of this biomolecular building block under controlled microhydration. It was demonstrated that, as protonation enhances the acidity of the NH groups, the ability for proton conductivity of ImH+ increases. A very important result is derived from the IRPD spectroscopy of C2H5+···L (L = Ar, N2, CO2, CH4) dimers. The equilibrium geometry of the C2H5+ has long been debated. Now, IRPD spectra were recorded over the range of the CH stretch fundamentals (covering possible sp3 and sp2 hybridization of C). Depending on the ligand species, the spectra are found to be dominated by the fingerprint of two largely different dimer geometries. Using the experimental C2H5+···Ar spectrum and the corresponding QCCs, the structure of the (weakly perturbed) C2H5+ was found to be the nonclassical one, with one proton straddling across the C=C bond of the H2C=CH2. On the other hand, ligands like N2 and CH4 are strongly influencing the geometry, as seen in the spectral signatures of the C2H5+···N2 and C2H5+···CH4, which correspond to the classical [H2CCH3]+. It was thus demonstrated that while the nonclassical C2H5+ is the global minimum on the PES of the free [C2,H5]+, the structure of the C2H5+ can be strongly influenced by the chemical properties of the environment.}, subject = {Infrarot}, language = {en} } @phdthesis{Solak2007, author = {Solak, Ebru}, title = {Almost Completely Decomposable Groups of Type (1,2)}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-24794}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2007}, abstract = {A torsion free abelian group of finite rank is called almost completely decomposable if it has a completely decomposable subgroup of finite index. A p-local, p-reduced almost completely decomposable group of type (1,2) is briefly called a (1,2)-group. Almost completely decomposable groups can be represented by matrices over the ring Z/hZ, where h is the exponent of the regulator quotient. This particular choice of representation allows for a better investigation of the decomposability of the group. Arnold and Dugas showed in several of their works that (1,2)-groups with regulator quotient of exponent at least p^7 allow infinitely many isomorphism types of indecomposable groups. It is not known if the exponent 7 is minimal. In this dissertation, this problem is addressed.}, language = {en} } @phdthesis{Hippius2007, author = {Hippius, Catharina}, title = {Multichromophoric Arrays of Perylene Bisimide Dyes - Synthesis and Optical Properties}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-24767}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2007}, abstract = {The present work deals with the synthesis and the investigation of the photophysical properties of covalently constructed calix[4]arene-perylene bisimide dye arrays containing various PBI units. The obtained conjugates are characterized with respect towards their application in a new, zigzag-type architecture of artificial light-harvesting systems. For this purpose, orange (core-unsubstituted), red (6,7,11,12-tert-butylphenoxy-functionalized) and green (1,7-pyrrolidino-substituted) perylene bisimide building blocks have been attached to the calix[4]arene scaffold. First, the monochromophoric reference systems have been studied, and second, the photophysical properties of a comprehensive series of newly synthesized, multichromophoric calix[4]arene-perylene bisimide conjugates showing efficient energy transfer processes between the individual dye subunits have been investigated. Furthermore, a series of bichromophoric compounds containing identical chromophoric units has been obtained. Towards this goal, a variety of spectroscopic techniques such as UV/vis absorption, steady state and time-resolved fluorescence emission, and femtosecond transient absorption spectroscopy as well as a spectrotemporal analysis of the obtained data has been applied. This work presents a new concept for an artificial light-harvesting system positioning the dye units by means of calix[4]arene spacers along a zigzag chain. The investigations start with the syntheses and optical properties of the monochromophoric building blocks and result in an elaborate study on the energy and electron transfer processes occurring after photoexcitation in a comprehensive series of multichromophoric calix[4]arene-perylene bisimide conjugates. Finally, the photophysical properties of a series of compounds containing each two identical PBI units are discussed.}, subject = {Fluoreszenz-Resonanz-Energie-Transfer}, language = {en} } @phdthesis{Nayak2007, author = {Nayak, Arnab}, title = {Sumoylation Modulates NFATc1-mediated Lymphokine Gene Expression}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-24722}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2007}, abstract = {Die Aktivit{\"a}t von Transkriptionsfaktoren kann durch die Modifikation mit SUMO positiv oder negativ beeinflusst werden, indem Protein-Protein-Interaktionen als auch die subzellul{\"a}re bzw. subnukle{\"a}re Lokalisation ver{\"a}ndert werden. In T-Zellen spielt die Familie der NFAT (Nuclear Factor of Activated T cells)-Transkriptionsfaktoren eine wichtige Rolle bei der Zytokingenregulation. NFATc1 wird durch die Verwendung zwei verschiedener Promotoren (P1 \& P2) bzw. Polyadenylierungsstellen (pA1 \& pA2) und alternativen Spleißens in sechs Isoformen exprimiert. Sie werden als NFATc1/alphaA, betaA, alphaB, betaB, alphaC und betaC bezeichnet, wobei alpha und beta sich auf die beiden unterschiedlichen 1. Exons und A, B, C sich auf die differentiell gespleißten und unterschiedlich langen C-Termini beziehen. Die NFATc1/A-Isoformen umfassen einen relativ kurzen C-Terminus, w{\"a}hrend die langen Isoformen B und C extra-C-terminale Peptide von 128 bzw. 246 Aminos{\"a}uren aufweisen. Um die spezifischen, biologischen Effekte der NFATc1-Isoformen zu untersuchen, wurde ein sog. ‚Yeast two Hybrid screen' mit einer humanen Milz-cDNA-Bibliothek und dem NFATc1/C-spezifischen C-Terminus durchgef{\"u}hrt. Am Ende wurden Ubc9 und PIAS1, Proteine, die an der Sumoylierung beteiligt sind, am h{\"a}ufigsten dedektiert. Anschließend konnte gezeigt werden, dass NFATc1 tats{\"a}chlich sumoyliert wird. Das Ausmaß an Sumoylierung ist Isoformen abh{\"a}ngig. W{\"a}hrend NFATc1/A, das eine einzige Sumoylierungsstelle besitzt, nur eine geringe Sumoylierung aufweist, f{\"u}hren die beiden zus{\"a}tzlichen Stellen in NFATc1/C zu einer effizienten Modifikation mit SUMO. Diese C-terminale Modifikation dirigiert NFATc1/C in SUMO-1-K{\"o}rperchen, die mit PML-nbs kolokalisieren. Dar{\"u}ber hinaus rekrutiert sumoyliertes NFATc1/C die transkriptionellen Korepressoren HDAC (sowohl Klasse I wie Klasse II HDACs), was zu einer signifikanten Verringerung der Histonazetylierung am IL-2-Promotor, eines wichtigen NFATc1-Zielgens, f{\"u}hrt. Konsequenterweise wurde eine Verminderung der IL-2-Produktion beobachtet, w{\"a}hrend NFATc1/C, das wegen Mutation der entscheidenden Lysine nicht mehr sumoyliert werden kann, ein dramatisch erh{\"o}htes Transaktivierungspotential am IL-2-Promotor aufwies. Das unterst{\"u}tzt unsere Daten, die mit einem IL-2-Promotor getriebenen Reporterassay gewonnen wurden und zeigen, dass das Transaktivierungspotential von NFATc1/C durch Sumoylierung herabgesetzt wird. Demzufolge {\"u}bt Sumoylierung einen negativen Effekt auf die transkriptionelle NFATc1-Aktivit{\"a}t aus. Immunfluoreszenzversuche zeigten, dass die Modifikation mit SUMO außerdem zur Relokalisation von NFATc1/C in transkriptionell inaktive, heterochromatische Regionen f{\"u}hrt, was durch die F{\"a}rbung von trimethyliertem Histon mit anti-H3K9 m3 nachgewiesen wurde. Interessanterweise war in Abwesenheit von Sumoylierung NFATc1 teilweise mit transkriptionellen Hotspots im Kern lokalisiert. Das mag zu dem h{\"o}heren Transkriptionspotential des nicht-sumoylierten NFATc1 beitragen. Es ist wichtig zu erw{\"a}hnen, dass die transkriptionelle Aktivit{\"a}t auf andere NFATc1-Zielgene durch die Sumoylierung von NFATc1 positiv verst{\"a}rkt war. Dies deutet auf einen nicht-universalen Effekt der Sumoylierung auf die NFATc1/C-Funktion hin. Demzufolge dirigiert Sumoylierung NFATc1 in Kernk{\"o}rperchen, wo es mit transkriptionellen Korepressoren interagiert und selbst ans Heterochromatin relokalisiert, was zu einer Repression der NFATc1/C vermittelten Transkription f{\"u}hrt. Als sehr wichtig erscheint, dass der Effekt der NFATc1/C-Sumoylierung Promotor spezifisch ist. Zusammengenommen ver{\"a}ndet die Modifikation mit SUMO die NFATc1-Funktion von einem Transaktivator zu einem DNA-Bindungsstellen spezifischen Repressor. Daher wird hier ein neuer regulatorischer Mechanismus aufgezeigt, der die Isoform spezifische NFAT-Funktion kontrolliert.}, language = {en} } @phdthesis{Marquetand2007, author = {Marquetand, Philipp}, title = {Vectorial properties and laser control of molecular dynamics}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-24697}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2007}, abstract = {In this work, the laser control of molecules was investigated theoretically. In doing so, emphasis was layed on entering vectorial properties and in particular the orientation in the laboratory frame. Therefore, the rotational degree of freedom had to be included in the quantum mechanical description. The coupled vibrational and rotational dynamics was examined, which is usually not done in coherent control theory. Local control theory was applied, where the field is determined from the dynamics of a system, which reacts with an instantaneous response to the perturbation and, in turn, determines the field again. Thus, the field is entangled with the quantum mechanical motion and the presented examples document, that this leads to an intuitive interpretation of the fields in terms of the underlying molecular dynamics. The limiting case of a classical treatment was shown to give similar results and hence, eases to understand the complicated structure of the control fields. In a different approach, the phase- and amplitude shaping of laser fields was systematically studied in the context of controlling population transfer in molecules.}, subject = {Laserchemie}, language = {en} } @phdthesis{Sandblad2007, author = {Sandblad, Linda}, title = {Seam Binding, a Novel Mechanism for Microtubule Stabilization}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-24714}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2007}, abstract = {Microtubules are a fascinating component of the cellular scaffold protein network, the cytoskeleton. These hollow tubular structures are assembled of laterally associated proto-filaments containing ab-tubulin heterodimers in a head to tail arrangement. Accordingly microtubules have a defined polarity, which sets the base for the polarity of the cell. The microtubule lattice can be arranged in two conformations: In the more abundant B-lattice conformation, where the protofilaments interact laterally through a- to a- and b- to b-tubulin contacts and in the less stable A-lattice conformation, where a-tubulin interacts laterally with b-tubulin. In cells the microtubules generally contain 13 protofilaments of which usually one pair interacts in the A-lattice conformation, forming the so-called lattice seam. Microtubule dynamics and interactions are strongly regulated by micro-tubule associate proteins (MAPs). Structural investigations on MAPs and microtubule associated motor proteins in complex with microtubules have become possible in combination with modern electron microscopy (EM) and image processing. We have used biochemistry and different advanced EM techniques to study the interaction between microtubules and the MAP Mal3p in vitro. Mal3p is the sole member of the end-binding protein 1 (EB1) protein family in the fission yeast Schizosaccharomyces pombe. Previous in vivo studies have shown that Mal3p promotes microtubule growth. Our studies with high-resolution unidirectional shadowing EM revealed that Mal3p interacts with the microtubule lattice in a novel way, using binding sites on the microtubule that are different from those reported for other MAPs or motor proteins. Full-length Mal3p preferentially binds between two protofilaments on the microtubule lattice, leaving the rest of the lattice free. A case where Mal3p was found in two adjacent protofilament, revealed an A-lattice conformation on the microtubules, surprisingly indicating specific binding of Mal3p to the microtubule seam. With a lattice enhancer, in form of a b-tubulin binding kinesin motor domain, it was demonstrated that Mal3p stabilizes the seam which is thought to be the weakest part of a microtubule. Further, the presence of Mal3p during microtubule polymerization enhances the closure of protofilament sheets into a tubular organization. Cryo-EM and 3-D helical reconstruction on a monomeric microtubule binding domain of Mal3p, confirm the localization in between the protofilament and result in an accurate localization on the microtubule lattice. The results also indicate Mal3p's capacity to influence the microtubule lattice conformation. Together, studies approached in vitro demonstrate that an EB1-family homolog not only interacts with the microtubule plus end, but also with the microtubule lattice. The structure of Mal3p interacting with microtubules reveals a new mechanism for microtubule stabilization and further insight on how plus end binding proteins are able promote microtubule growth. These findings further suggest that microtubules exhibit two distinct reaction platforms on their surface that can independently interact with selected MAPs or motors.}, subject = {Mikrotubulus}, language = {en} } @phdthesis{Bockmeyer2007, author = {Bockmeyer, Matthias}, title = {Structure and Densification of Thin Films Prepared From Soluble Precursor Powders by Sol-Gel Processing}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-24577}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2007}, abstract = {The main focus of this work was to get a deeper understanding of the relationship between the structure of sol-gel films, their densification and their macroscopic cracking. First of all titania was chosen as model system. Therefore a synthesis route starting from the preparation of long-term stable amorphous redissoluble precursor powders based on acetylacetone as chelate ligand was utilized. The solubility and stability of the powders in various solvents can be determined by chemical synthesis and technological parameters. When dissolved in a solvent mixture of ethanol and 1,5-pentanediol, thin films can be easily prepared by dip-coating technique. Thereby the quality of the titania films enormously depends on the calcinations temperature and the solvent mixture is used. In order to investigate the influence of different solvents and solvent mixtures on the microstructure and densification of the precursors, the coating solutions were stripped off (sol powder) and analyzed as function of annealing temperature. It was pointed out that a high densification rate caused by the addition of 1,5-pentanediol, results in dense microstructure with trapped residual carbon. These impurities can retard the phase transformation of anatase to rutile. The analysis of so-called "film powders" scraped off multiple dip-coated substrates provides valuable information on the effect of air moisture and unidirectional densification during drying and aging on the structure of thin films. The high surface-to-volume ratio and access to air moisture determine the chemical composition of the as-prepared film, which controls shrinkage, crystallization and defect structure of the coatings. Further it was shown, that drying as a thin film results in the formation of closed pores and much denser microstructure than the respective sol powder. Without the addition of 1,5-pentanediol all -OEt moieties undergo hydrolysis reactions, which causes the formation of a rigid network. The presence of 1,5-pentanediol retards this hydrolysis reactions and provides some network plasticity. Generally the microstructure of thin films is comparatively close to the microstructure of the film powders. The addition of 1,5-pentandiol prevents hydrolysis and condensation reactions as like in the film powders. However even at 700 °C, thin films never transform to rutile, which was attributed to the tensile stresses in thin films. In thin films and in film powders as well a comparable amount of closed pores are formed during annealing. Further it was shown that most of the thin sol-gel films investigated form a dense crust on their tops during annealing. This explains why crack free films exhibit only closed pores. However, when cracks appear during thin film shrinkage in the coating, this crust is burst, which generates open porosity. The defect density in the coatings was determined by an automated analysis of surface images. The crack formation and quantity can be directly referred to tensile stresses in the coatings, which arise from hydrolysis and condensation during thin film drying and aging. Therefore when 1,5-pentanediol is added to the sol, thin film cracking was avoided, because hydrolysis and condensation reactions are retarded, which preserves a higher network flexibility. Furthermore the crack formation was significantly influenced by the atmospheric humidity that was used during the coating process, which was explained by different drying and condensation rates. Under certain chemical starting conditions water soluble precursor powders can be also obtained. In general the observations made with the water based coating solutions are mostly in agreement with the former results based on ethanol based coating solutions. For example the high surface-to-volume ratio of film powders compared to sol powders also significantly enhances film drying and densification. The addition of 1,5-pentanediol also clearly contributes to their densification behavior and phase evolution. As seen before in the case of ethanol based coatings, 1,5-pentanediol enhances the stability towards hydrolysis and condensation reactions and preserves some network plasticity. Therefore coatings prepared without the addition of 1,5-pentanediol already form cracks during film drying and aging because of tensile stresses. Thus, the addition of 1,5-pentanediol results in a reduction/prevention of crack formation. Nevertheless some differences were observed, i.e. the critical single coating film thickness of ethanol based coatings is nearly twice that of water based coatings. This was explained by the different surface tensions of the basis solvents, which during thin film drying causes significantly higher capillary forces and tensile stresses in water based coatings. When acetylacetone is replaced by triethanolamine as chelating ligand for titanium also re-dissolvable precursor powders can be synthesized. The film powders combine a high hydrolytic stability of the precursor with sufficient intermediate network flexibility. The different type of organics changes the drying and densification behavior: i.e. in contrast to film powders obtained from acetylacetone based precursor powders the structure of triethanolamine based film powders is unaffected by the thin film drying process. This high hydrolytic stability and plasticity of this precursor allows the preparation of defect free coatings up to single film thickness of 300 nm. However triethanolamine based thin films present at intermediary annealing temperatures a distinctively different microstructure compared to acetylacetone based films. The general validity of the conclusions was proved on the basis of zirconia coatings that were also prepared by the use of re-dissolvable precursor powders. In principle all conclusions concerning the interconnection of precursor chemistry, film formation, densification and structure were transferable to the respective zirconia coatings. Differences mainly arise only from differential material properties i.e. bulk density. Finally, it has been pointed out that the findings obtained on the densification behavior of thinsol-gel films are also a valuable tool for improved explanations of other important scientific questions concerning sol-gel films, i.e. scratch resistance of sol-gel coatings, fiber -bridging and - degradation of sol-gel coated fibers.}, subject = {Sol-Gel-Verfahren}, language = {en} }