@article{WeisenbergerScheerBenavente1993,
  author    = {Weisenberger, Dieter and Scheer, Ulrich and Benavente, Ricardo},
  title     = {The DNA topoisomerase I inhibitor camptothecin blocks postmitotic reformation of nucleoli in mammmalian cells},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-41434},
  year      = {1993},
  abstract  = {No abstract available},
  subject      = {Cytologie},
  language  = {en}
}
@article{MuellerScheer1970,
  author    = {M{\"u}ller, R. and Scheer, Ulrich},
  title     = {Klangspektrographische Untersuchungen der Laut{\"a}ußerung beim Krallenfrosch, Xenopus laevis},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-40529},
  year      = {1970},
  abstract  = {No abstract available},
  language  = {de}
}
@phdthesis{Kukat2007,
  author    = {Kukat, Alexandra},
  title     = {Mitochondriale Fusions- und Fissionsvorg{\"a}nge am Modellsystem von Mega-Mitochondrien einer rho0-Zelllinie},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-26484},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2007},
  abstract  = {Viele Funktionen der Mitochondrien basieren auf Prozessen, an denen sowohl mitochondriale wie auch kernkodierte Genprodukte beteiligt sind. Durch zahlreiche Interaktionen ist der Einfluss dieser Einzelkomponenten auf das zellul{\"a}re System oftmals nur schwierig erkennbar. Mit Hilfe von rho0 -Zellen, deren Mitochondrien {\"u}ber kein eigenes Genom mehr verf{\"u}gen, kann die mitochondriale Genkomponente ausgeschlossen werden. Im Rahmen dieser Arbeit wurden zun{\"a}chst die metabolischen, proliferativen und morphologischen Eigenschaften einer rho0-Zelllinie 143B.TK-K7 untersucht, welche durch die Expression einer mitochondrial zielgesteuerten Restriktionsendonuklease hergestellt wurde. W{\"a}hrend der Kultivierung bilden sich im Zytoplasma der 143B.TK-K7-Zellen mit fortlaufender Kultivierungszeit und zunehmenden Azidifizierung des Mediums Mega-Mitochondrien. Diese entstehen sowohl durch zahlreiche Fusionsereignisse als auch einem Schwellen durch vermehrten Wassereinfluss in die Mitochondrienmatrix. Alle Mitochondrien liegen dann als große kugelf{\"o}rmige Strukturen in der Zelle vor und nehmen somit die geringste Oberfl{\"a}che zu einem vorhandenen Volumen ein. Die Entstehung der Mega-Mitochondrien ist dabei abh{\"a}ngig von einer hohen Protonenkonzentration zus{\"a}tzlich zu einer ausreichend großen Menge an Laktat im Medium (Milchs{\"a}ure). Zudem zeigt sich, dass auch in Zellen, welche noch ein mitochondriales Genom besitzen, durch diese Bedingungen die Bildung von Mega-Mitochondrien induziert werden kann. Bei der Entstehung der Mega-Mitochondrien handelt es sich zun{\"a}chst nicht um apoptotische Vorg{\"a}nge, da durch den Austausch des aziden Mediums eine {\"a}ußerst schnelle R{\"u}ckbildung in ein, den rho0-Zellen {\"a}hnliches Mitochondriennetzwerk erfolgt. Metabolische Untersuchungen zeigen, dass f{\"u}r die R{\"u}ckbildung der Mega-Mitochondrien zu einem Netzwerk ausschließlich die im Medium vorhandene Protonenkonzentration ausreichend gering sein muss. Durch immunzytochemische Untersuchungen wurde deutlich, dass sowohl das mitochondriale Fusionsprotein MFN2 wie auch das Fissionsprotein DNM1L w{\"a}hrend der Entstehung und auch R{\"u}ckbildung der Mega-Mitochondrien in punktf{\"o}rmigen Bereichen an der {\"a}ußeren Mitochondrienmembran lokalisieren. Um zu {\"u}berpr{\"u}fen, ob die Bildung der Mega-Mitochondrien durch einer {\"U}berexpression von Proteinen der Fissionsmaschinerie verhindert wird, wurden PAGFP- bzw. EGFP-Fusionsproteine mit hFis1 und DNM1L hergestellt und in die 143B.TK-K7-Zellen transfiziert. Dabei f{\"u}hrt eine verst{\"a}rkte Expression von hFis1 zu aggregierten Mitochondrien, welche zwar anschwellen, nach einem Mediumwechsel jedoch trotzdem bestehen bleiben. Eine {\"U}berexpression von DNM1L hat keinen Einfluss auf die Entstehung und R{\"u}ckbildung der Mega-Mitochondrien. Durch Inhibierung des Tubulin- bzw. Aktin-Zytoskeletts, konnte gezeigt werden, dass eine Zerst{\"o}rung des Tubulin-Zytoskeletts auf die Entstehung und R{\"u}ckbildung der Mega-Mitochondrien keine Auswirkungen hat. Die Untersuchungen zu dem Einfluss des Aktin-Zytoskeletts zeigen, dass die Mega-Mitochondrien ringf{\"o}rmig von dem Aktin-Zytoskelett umgeben sind. Mit Hilfe von Fluoreszenzprotein-Markern f{\"u}r die {\"a}ußere und innere Mitochondrienmembran wurden die Mega-Mitochondrien als Modellsystem f{\"u}r mitochondriale Fusions- und Fissionsstudien verwendet. Somit konnte in der vorliegenden Arbeit mitochondriale Fusion und Fission zum ersten Mal an lebenden Zellen direkt beobachtet werden und f{\"u}hrte nachfolgend zu der Einteilung von Fusionsvorg{\"a}ngen der Mitochondrien in einen Modus 1, bei dem eine zeitlich gekoppelte vollst{\"a}ndige Fusion von sowohl {\"a}ußerer wie auch innerer Membran geschieht und einen Modus 2, bei dem die Fusion der {\"a}ußeren Membranen ohne die Fusion der inneren Membranen erfolgt. In {\"a}hnlicher Weise kann die Fission von Mitochondrien unterteilt werden. In einem als Modus 1 bezeichneten Mechanismus beginnt die R{\"u}ckbildung der Mega-Mitochondrien zun{\"a}chst mit einer Tubulierung der Mitochondrien hin zu langen Mitochondrienschl{\"a}uchen, die einen nur geringen Durchmesser besitzen. Erst dann treten vermehrt zeitlich sehr schnell ablaufende Fissionsvorg{\"a}nge auf. Zus{\"a}tzlich wurde ein Modus 2-Mechanismus der Fission beobachtet, welcher aus einer unvollst{\"a}ndigen Fusion resultiert, bei dem die inneren Membranen noch nicht miteinander verschmolzen sind. Auf elektronenmikroskopischer Ebene finden w{\"a}hrend der Mega-Mitochondrien-Bildung drastische Ver{\"a}nderung von zwiebelringartigen Cristae hin zu einer Abnahme von inneren Membranstrukturen und der elektronendichte im Matrixraum statt. Somit ist im Rahmen dieser Arbeit zum ersten Mal eine optische Beobachtung sowohl dieser Bewegungen wie auch von Fusions- und Fissionsprozessen und deren zeitlich Aufl{\"o}sung in vivo mit Hilfe der Mega-Mitochondrien gelungen.},
  subject      = {Mitochondrium},
  language  = {de}
}
@phdthesis{Triphan2009,
  author    = {Triphan, Tilman},
  title     = {The Central Control of Gap Climbing Behaviour in Drosophila melanogaster},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-43666},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2009},
  abstract  = {In this work, a behavioural analysis of different mutants of the fruit fly Drosophila melanogaster has been carried out. Primarily, the gap climbing behaviour (Pick \& Strauss, 2005) has been assayed as it lends itself for the investigation of decision making processes and the neuronal basis of adaptive behaviour. Furthermore it shows how basic motor actions can be combined into a complex motor behaviour. Thanks to the neurogenetic methods, Drosophila melanogaster has become an ideal study object for neurobiological questions. Two different modules of climbing control have been examined in detail. For the decision making, the mutant climbing sisyphus was analysed. While wild-type flies adapt the initiation of climbing behaviour to the width of the gap and the probability for a successful transition. climbing sisyphus flies initiate climbing behaviour even at clearly insurmountable gap widths. The climbing success itself is not improved in comparison to the wild-type siblings. The mutant climbing sisyphus is a rare example of a hyperactive mutant besides many mutants that show a reduced activity. Basic capabilities in vision have been tested in an optomotor and a distance-estimation paradigm. Since they are not affected, a defect in decision making is most probably the cause of this behavioural aberration. A second module of climbing control is keeping up orientation towards the opposite side of the gap during the execution of climbing behaviour. Mutants with a structural defect in the protocerebral bridge show abnormal climbing behaviour. During the climbing attempt, the longitudinal body axis does not necessarily point into the direction of the opposite side. Instead, many climbing events are initiated at the side edge of the walking block into the void and have no chance to ever succeed. The analysed mutants are not blind. In one of the mutants, tay bridge1 (tay1) a partial rescue attempt used to map the function in the brain succeeded such that the state of the bridge was restored. That way, a visual targeting mechanism has been activated, allowing the flies to target the opposite side. When the visibility of the opposing side was reduced, the rescued flies went back to a tay1 level of directional scatter. The results are in accord with the idea that the bridge is a central constituent of the visual targeting mechanism. The tay1 mutant was also analysed in other behavioural paradigms. A reduction in walking speed and walking activity in this mutant could be rescued by the expression of UAS-tay under the control of the 007Y-GAL4 driver line, which concomitantly restores the structure of the protocerebral bridge. The separation of bridge functions from functions of other parts of the brain of tay1 was accomplished by rescuing the reduced optomotor compensation in tay1 by the mb247-GAL4>UAS-tay driver. While still having a tay1-like protocerebral bridge, mb247-GAL4 rescue flies are able to compensate at wild-type levels. An intact compensation is not depended on the tay expression in the mushroom bodies, as mushroom body ablated flies with a tay1 background and expression of UAS-tay under the control of mb247-GAL4 show wild-type behaviour as well. The most likely substrate for the function are currently unidentified neurons in the fan-shaped body, that can be stained with 007Y-GAL4 and mb247-GAL4 as well.},
  subject      = {Taufliege},
  language  = {en}
}
@article{FialaMaschwitz1991,
  author    = {Fiala, Brigitte and Maschwitz, Ulrich},
  title     = {Extrafloral nectaries in the genus Macaranga (Euphorbiaceae) in Malaysia: comparative studies of their possible significance as predispositions for myrmecophytism.},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-42863},
  year      = {1991},
  abstract  = {So me species of the paleotropical tree genus Macaranga (Euphorbiaceae) live in elose association with ants. Thc genus comprises the full range of species from those not regularly inhabited by ants to obligate myrmecophytes. In Malaysia (peninsular and Borneo) 23 ofthe 52 species areknown to be ant-associated (44\%). The simplest structural adaptation of plants to attract ants are extrafloral nectaries. We studied the distribution of extraflural nectaries in the genus Macaranga to assess the significance of this character as a possible predisposition for the evolution of obligate myrmecophytism. All species have marginal glands on the leaves. However, only the glands of nonmyrmecophytic species function as nectaries, whereas liquids secreted by these glands in myrmecophytic species did not contain sugar. Some non-myrmecophytic Macaranga and transitional Macaranga species in addition have extrafloral nectaries on the leaf blade near the petiole insertion. All obligatorily myrmecophytic Macaranga species, however, lack additional glands on the lamina. The non-myrmecophytic species are visited by a variety of different ant species, whereas myrmecophytic Macaranga are associated only with one specific ant-partner. Since these ants keep scale insects in the hollow sterns, reduction of nectary production in ant-inhabited Macaranga seems to be biologically significant. We interpret this as a means of (a) saving the assimilates and (b) stabilization of maintenance of the association's specificity. Competition with other ant species for food rewards is avoided and thereby danger ofweakening the protective function ofthe obligate antpartner for the plant is reduced. A comparison with other euphorb species living in the same habitats as Macaranga showed that in genera in which extrafloral nectaries are widespread, no myrmecophytes have evolved. Possession of extrafloral nectaries does not appear to be essential for the development of symbiotic ant-plant interactions. Other predispositions such as nesting space might have played a more important role.},
  subject      = {Macaranga},
  language  = {en}
}
@incollection{Fiala1990,
  author    = {Fiala, Brigitte},
  title     = {Die Ameisenpflanzen der Gattung Macaranga (Euphorbiaceae) - verschiedene Stufen der Pflanzen-Ameisen-Beziehungen},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-42914},
  publisher      = {Universit{\"a}t W{\"u}rzburg},
  year      = {1990},
  abstract  = {No abstract available},
  language  = {de}
}
@article{FialaMebert1990,
  author    = {Fiala, Brigitte and Mebert, M.},
  title     = {Partnerschaft f{\"u}rs {\"U}berleben. Ameisenb{\"a}ume im tropischen Regenwald.},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-42900},
  year      = {1990},
  abstract  = {No abstract available},
  language  = {de}
}
@article{Fiala1991,
  author    = {Fiala, Brigitte},
  title     = {Partnerschaften von Pflanzen und Ameisen: Ameisenb{\"a}ume im malaysischen Regenwald.},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-42936},
  year      = {1991},
  abstract  = {No abstract available},
  language  = {de}
}
@article{MaschwitzFialaLinsenmair1992,
  author    = {Maschwitz, Ulrich and Fiala, Brigitte and Linsenmair, K. Eduard},
  title     = {A new ant-tree from SE Asia: Zanthoxylum myriacanthum (Rutaceae), the Thorny Ivy-Rue},
  isbn      = {0025-1291},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-42967},
  year      = {1992},
  abstract  = {Zanthoxylum myriacanthum, a small Rutaceous tree growing mainly in secondary hill forests in SE Asia, is a true myrmecophyte. It possesses stem domatia in the form of hollow branches with slitlike openings. Branch hollows and entrance slits are produced by the plant itself through pith degene~.tion ?u.d growth proceSses. If the entrance is not kept open by ants it closes again by growth ol the surrounding tissue after some time. The domatia are colonized opportunistic ally by different arboreous ants, e.g. Crematogaster and Campono tus. Additionally many small extrafloral nectaries are found on the leaflets of Zanthoxylum myriacanthum. Judging from herbarium studies and literature records at least four more true ant trees are found in the genus Zanthoxylum namely Z. rhetsa in SE Asia, Z. conspersipunctatum, Z. pluviatile and Z. vinkii in New Guinea. We could not confirm ant inhabitation in Drypetes pendula (Euphorbiaceae) on the Malay Peninsula, which has also been recorded to be an anttree.},
  language  = {en}
}
@phdthesis{Kukat2008,
  author    = {Kukat, Christian},
  title     = {Fusion, Fission und Nucleoids in Megamitochondrien},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-30467},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2008},
  abstract  = {In rho0-Zellen, die {\"u}ber keine mitochondriale DNA (mtDNA) mehr verf{\"u}gen, entstehen w{\"a}hrend der Kultivierung Megamitochondrien durch endogene Milchs{\"a}ure-Azidifizierung des Kulturmediums. Diese Riesenorganellen bilden sich dabei durch mitochondriale Fusionsereignisse und/oder eine Hemmung der Fission. In Zellen mit mitochondrialem Genom ist es ebenso m{\"o}glich Megamitochondrien durch artifizielles Ans{\"a}uern des Kulturmediums zu induzieren. Diese Erkenntnisse wurden im Rahmen dieser Arbeit als Werkzeug verwendet, um Einblicke in mitochondriale Fusions- und Fissionsereignisse zu erlangen. Zun{\"a}chst wurde die Fusion mitochondrialer Matrixkompartimente mithilfe der photoaktivierbaren Variante des gr{\"u}nen fluoreszierenden Proteins (PA-GFP) untersucht. Hiermit konnte gezeigt werden, dass das Vermischen der Matrixkompartimente nach der Fusion ein sehr schneller Prozess ist. Die Analyse der Bildung und R{\"u}ckbildung der Megamitochondrien erfolgte sowohl konfokal- als auch elektronenmikroskopisch, wobei sich zeigte, dass die Matrix der Riesenorganellen kaum mehr Cristae beinhaltet. Die R{\"u}ckbildung der Megamitochondrien zum normalen Netzwerk ist ein sehr schneller Prozess, bei dem schon nach 15 min keine vergr{\"o}ßerten Organellen mehr sichtbar sind. Dies indiziert, dass der R{\"u}ckbildungsprozess wahrscheinlich durch Ver{\"a}nderungen von verf{\"u}gbaren Proteinen durchgef{\"u}hrt wird, ohne die Induzierung von Proteinneusynthese. Untersuchungen auf ultrastruktureller Ebene zeigten, dass es w{\"a}hrend der R{\"u}ckbildung zur Formation von drei unterschiedlichen Mitochondrientypen kam, die sich in ihrer Morphologie stark unterschieden. Weiterhin wurden vergleichende Studien zur Bildung der Megamitochondrien durchgef{\"u}hrt, bei denen der Einfluss von Atmungsketten-Inhibitoren auf die Bildung von Milchs{\"a}ure-induzierten Riesenorganellen untersucht wurde. Die Resultate deuten f{\"u}r die Megamitochondrieninduktion auf eine Abh{\"a}ngigkeit auf ein intaktes Membranpotential hin. Immunzytochemisch wurde die endogene Lokalisation der mitochondrialen Fusions- und Fissionsproteine Mitofusin 2, hFis1 und Drp1/DNM1L am Modellsystem der Megamitochondrieninduktion aufgekl{\"a}rt. Es zeigte sich, dass diese Proteine punktf{\"o}rmig an der {\"a}ußeren Membran der Riesenorganellen lokalisieren Um das Modellsystem an lebenden Zellen zu nutzen, wurden Vektoren konstruiert, die fluoreszenzmarkierte Proteine der mitochondrialen Fusions- und Fissionsmaschinerie exprimierten. Hiermit konnte einerseits die Lokalisation von Mitofusin 1, Mitofusin 2, hFis1 und Drp1/DNM1L in lebenden Zellen nach Induktion der Megamitochondrien analysiert werden und andererseits der Einfluss der {\"U}berexpression dieser Proteine auf die Bildung der Riesenorganellen dokumentiert werden. Die Ergebnisse machten deutlich, dass nur die {\"U}berepxression von hFis1 die Bildung der Megamitochondrien verhinderte. Ein weiterer Schwerpunkt der vorliegenden Arbeit lag in der Visualisierung und Dynamik mitochondrialer Nucleoids in lebenden Zellen. Nucleoids sind Protein-DNA-Komplexe, in denen mitochondriale Genome organisiert sind. Mit dem Farbstoff PicoGreen gelang es mtDNA in lebenden Zellen zu f{\"a}rben und Dynamikstudien der punktf{\"o}rmigen Strukturen mikroskopisch festzuhalten. W{\"a}hrend sich mtDNA im mitochondrialen Netzwerk nur marginal aufgrund stattfindender Fusions- und Fissionsereignisse bewegte kam es in den Milchs{\"a}ure-induzierten Megamitochondrien zu einer extensiven und extrem schnellen Bewegung von mitochondrialer DNA. In anschließenden Versuchen wurde der mitochondriale Transkriptions- und Verpackungsfaktor TFAM als fluoreszentes Fusionsprotein in Zellen transfiziert und Kolokalisationsstudien zeigten, dass das Fusionsprotein mit mtDNA kolokalisiert. In den Riesenorganellen pr{\"a}sentierten punktf{\"o}rmige TFAM-gef{\"a}rbte Nucleoids ein sehr dynamisches Verhalten mit schneller Bewegung. In rho0-Zellen ohne mitochondriale DNA war die TFAM-Fluoreszenz hingegen gleichm{\"a}ßig verteilt. Ein weiterer Nucleiodbestandteil ist das mitochondriale DNA-Einzelstrangbindeprotein SSBP1, welches in Megamitochondrien ebenso ein sehr dynamisches Verhalten aufwies. Eine mitochondrial-zielgesteuerte und EGFP-markierte Restriktionsendonuklease wies ebenfalls das typische, punktf{\"o}rmige Nucleoidmuster im mitochondrialen Netzwerk auf, was auf eine Interaktion mit der mtDNA schließen l{\"a}sst. In rho0-Zellen ohne mtDNA kam es jedoch zur gleichm{\"a}ßigen Verteilung des Konstruktes in den Mitochondrien. Zusammenfassend wurden in dieser Arbeit sowohl Einblicke in die Biologie der Megamitochondrien gewonnen, als auch Erkenntnisse {\"u}ber die Dynamik mitochondrialer Protein-DNA-Komplexe, wobei der Schwerpunkt hierbei auf einer Analyse mit Hilfe optischer Methoden lag.},
  subject      = {Mitochondrium},
  language  = {de}
}
@phdthesis{Schmitt2008,
  author    = {Schmitt, Johannes},
  title     = {Proteine der Kernh{\"u}lle und deren Rolle bei der Umgestaltung des Zellkerns meiotischer und postmeiotischer Zellen von S{\"a}ugern},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-31203},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2008},
  abstract  = {W{\"a}hrend der Spermatogenese finden erstaunliche Differenzierungsprozessen statt. Reguliert wird die Spermatogenese sowohl hormonell als auch durch Wechselwirkungen zwischen verschiedenen Zelltypen und der extrazellul{\"a}rer Matrix. Unterteilt wird die Spermatogenese in drei funktionelle Einheiten. Die Proliferationsphase, die Meiose und die Spermiogenese. Im Laufe der Proliferationsphase gehen aus den Spermatogonien, Spermatocyten hervor, die die Meiose durchlaufen. W{\"a}hrend der Prophase I der Meiose kommt es zur Reduktion und Rekombination des genetischen Materials, was mit charakteristischen und h{\"o}chst dynamischen Bewegungsvorg{\"a}ngen der Telomere einhergeht. Auf die Meiose folgt die Spermiogenese, in der das genetische Material in seine „Transportform" {\"u}berf{\"u}hrt wird und aus einer station{\"a}ren, zellverbundenen Einheit ein mobiles autark funktionierendes Vehikel des genetischen Materials wird; das Spermium. Um das Verst{\"a}ndnis dieser Vorg{\"a}nge zu erweitern wurden in dieser Arbeit die Verteilungsmuster einiger Proteine in der Kernh{\"u}lle von Zellen der Spermatogenese, in Hinblick auf ihre dynamische Umverteilung untersucht. Bei diesen Proteinen handelte es sich um die SUN-Dom{\"a}nen Proteine und das meiosespezifische Lamin C2. Die SUN-Dom{\"a}nen Proteine sind Teil des membrandurchspannenden LINC-Komplexes, der Komponenten des Nukleoplasma mit denen des Cytoplasma verbindet. In dieser Arbeit konnte gezeigt werden, dass die SUN-Dom{\"a}nen Proteine, Sun1 und Sun2 w{\"a}hrend der Meiose exprimiert werden, und an den Anheftungsplatten meiotischer Chromosomen lokalisieren und deren dynamisches Verteilungsmuster dem Verteilungsmuster der Telomere w{\"a}hrend der Prophase I der Meiose entsprechen. Dies deutet darauf hin, dass Sun1 und Sun2 eine tragende Rolle, w{\"a}hrend der koordinierten Bewegungsprozessen der Prophase I der Meiose spielen. In der Spermiogenese sind die SUN-Dom{\"a}nen Proteine, Sun1 und Sun3 vertreten. Dabei weist deren unterschiedliche Lokalisation an entgegengesetzten Zellpolen darauf hin, dass Sun1 und Sun3 m{\"o}glicherweise unterschiedliche Funktionen bei der Umgestaltung des Spermienkopfes w{\"a}hrend der Spermiogenese erf{\"u}llen. Ein weiterer Schwerpunkt dieser Arbeit war die Etablierung einer Mauslinie um die Rolle von Lamin C2 in der Meiose untersuchen zu k{\"o}nnen. Hierzu wurde eine Lamin C2 Knock-out Studie begonnen. In ersten Untersuchungen der knock-out Tiere konnte eine Gr{\"o}ßenreduktion der Hoden beobachtet werden. Ebenso konnte ein Abbruch der Meiose vermerkt werden. Die Ergebnisse dieser Arbeit verdeutlichen, dass sowohl die SUN-Dom{\"a}nen Proteine, als auch Lamin C2, wichtige Rollen in dem komplexen Arrangement der Spermatogenese {\"u}bernehmen.},
  subject      = {Meiose},
  language  = {de}
}
@phdthesis{Pinkert2008,
  author    = {Pinkert, Stefan},
  title     = {The human proteome is shaped by evolution and interactions},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-35566},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2008},
  abstract  = {Das menschliche Genom ist seit 2001 komplett sequenziert. Ein Großteil der Proteine wurde mittlerweile beschrieben und t{\"a}glich werden bioinformatische Vorhersagen praktisch best{\"a}tigt. Als weiteres Großprojekt wurde k{\"u}rzlich die Sequenzierung des Genoms von 1000 Menschen gestartet. Trotzdem ist immer noch wenig {\"u}ber die Evolution des gesamten menschlichen Proteoms bekannt. Proteindom{\"a}nen und ihre Kombinationen sind teilweise sehr detailliert erforscht, aber es wurden noch nicht alle Dom{\"a}nenarchitekturen des Menschen in ihrer Gesamtheit miteinander verglichen. Der verwendete große hochqualitative Datensatz von Protein-Protein-Interaktionen und Komplexen stammt aus dem Jahr 2006 und erm{\"o}glicht es erstmals das menschliche Proteom mit einer vorher nicht m{\"o}glichen Genauigkeit analysieren zu k{\"o}nnen. Hochentwickelte Cluster Algorithmen und die Verf{\"u}gbarkeit von großer Rechenkapazit{\"a}t bef{\"a}higen uns neue Information {\"u}ber Proteinnetzwerke ohne weitere Laborarbeit zu gewinnen. Die vorliegende Arbeit analysiert das menschliche Proteom auf drei verschiedenen Ebenen. Zuerst wurde der Ursprung von Proteinen basierend auf ihrer Dom{\"a}nenarchitektur analysiert, danach wurden Protein-Protein-Interaktionen untersucht und schließlich erfolgte Einteilung der Proteine nach ihren vorhandenen und fehlenden Interaktionen. Die meisten bekannten Proteine enthalten mindestens eine Dom{\"a}ne und die Proteinfunktion ergibt sich aus der Summe der Funktionen der einzelnen enthaltenen Dom{\"a}nen. Proteine, die auf der gleichen Dom{\"a}nenarchitektur basieren, das heißt die die gleichen Dom{\"a}nen in derselben Reihenfolge besitzen, sind homolog und daher aus einem gemeinsamen urspr{\"u}nglichen Protein entstanden. Die Dom{\"a}nenarchitekturen der urspr{\"u}nglichen Proteine wurden f{\"u}r 750000 Proteine aus 1313 Spezies bestimmt. Die Gruppierung von Spezies und ihrer Proteine ergibt sich aus taxonomischen Daten von NCBI-Taxonomy, welche mit zus{\"a}tzlichen Informationen basierend auf molekularen Markern erg{\"a}nzt wurden. Der resultierende Datensatz, bestehend aus 5817 Dom{\"a}nen und 32868 Dom{\"a}nenarchitekturen, war die Grundlage f{\"u}r die Bestimmung des Ursprungs der Proteine aufgrund ihrer Dom{\"a}nenarchitekturen. Es wurde festgestellt, dass nur ein kleiner Teil der neu evolvierten Dom{\"a}nenarchitekturen eines Taxons gleichzeitig auch im selben Taxon neu entstandene Proteindom{\"a}nen enth{\"a}lt. Ein weiteres Ergebnis war, dass Dom{\"a}nenarchitekturen im Verlauf der Evolution l{\"a}nger und komplexer werden, und dass so verschiedene Organismen wie der Fadenwurm, die Fruchtfliege und der Mensch die gleiche Menge an unterschiedlichen Proteinen haben, aber deutliche Unterschiede in der Anzahl ihrer Dom{\"a}nenarchitekturen aufweisen. Der zweite Teil besch{\"a}ftigt sich mit der Frage wie neu entstandene Proteine Bindungen mit dem schon bestehenden Proteinnetzwerk eingehen. In fr{\"u}heren Arbeiten wurde gezeigt, dass das Protein-Interaktions-Netzwerk ein skalenfreies Netz ist. Skalenfreie Netze, wie zum Beispiel das Internet, bestehen aus wenigen Knoten mit vielen Interaktionen, genannt Hubs, und andererseits aus vielen Knoten mit wenigen Interaktionen. Man vermutet, dass zwei Mechanismen zur Entstehung solcher Netzwerke f{\"u}hren. Erstens m{\"u}ssen neue Proteine um auch Teil des Proteinnetzwerkes zu werden mit Proteinen interagieren, die bereits Teil des Netzwerkes sind. Zweitens interagieren die neuen Proteine, gem{\"a}ß der Theorie der bevorzugten Bindung, mit h{\"o}herer Wahrscheinlichkeit mit solchen Proteinen im Netzwerk, die schon an zahlreichen weiteren Protein-Interaktionen beteiligt sind. Die Human Protein Reference Database stellt ein auf Informationen aus in-vivo Experimenten beruhendes Proteinnetzwerk f{\"u}r menschliche Proteine zur Verf{\"u}gung. Basierend auf den in Kapitel I gewonnenen Informationen wurden die Proteine mit dem Ursprungstaxon ihrer Dom{\"a}nenarchitekturen versehen. Dadurch wurde gezeigt, dass ein Protein h{\"a}ufiger mit Proteinen, die im selben Taxon entstanden sind, interagiert, als mit Proteinen, die in anderen Taxa neu aufgetreten sind. Es stellte sich heraus, dass diese Interaktionsraten f{\"u}r alle Taxa deutlich h{\"o}her waren, als durch das Zufallsmodel vorhergesagt wurden. Alle Taxa enthalten den gleichen Anteil an Proteinen mit vielen Interaktionen. Diese zwei Ergebnisse sprechen dagegen, dass die bevorzugte Bindung der alleinige Mechanismus ist, der zum heutigen Aufbau des menschlichen Proteininteraktion-Netzwerks beigetragen hat. Im dritten Teil wurden Proteine basierend auf dem Vorhandensein und der Abwesenheit von Interaktionen in Gruppen eingeteilt. Proteinnetzwerke k{\"o}nnen in kleine hoch vernetzte Teile zerlegt werden, die eine spezifische Funktion aus{\"u}ben. Diese Gruppen k{\"o}nnen mit hoher statistischer Signifikanz berechnet werden, haben meistens jedoch keine biologische Relevanz. Mit einem neuen Algorithmus, welcher zus{\"a}tzlich zu Interaktionen auch Nicht-Interaktionen ber{\"u}cksichtigt, wurde ein Datensatz bestehend aus 8,756 Proteinen und 32,331 Interaktionen neu unterteilt. Eine Einteilung in elf Gruppen zeigte hohe auf Gene Ontology basierte Werte und die Gruppen konnten signifikant einzelnen Zellteilen zugeordnet werden. Eine Gruppe besteht aus Proteinen, welche wenige Interaktionen miteinander aber viele Interaktionen zu zwei benachbarten Gruppen besitzen. Diese Gruppe enth{\"a}lt eine signifikant erh{\"o}hte Anzahl an Transportproteinen und die zwei benachbarten Gruppen haben eine erh{\"o}hte Anzahl an einerseits extrazellul{\"a}ren und andererseits im Zytoplasma und an der Membran lokalisierten Proteinen. Der Algorithmus hat damit unter Beweis gestellt das die Ergebnisse nicht bloß statistisch sondern auch biologisch relevant sind. Wenn wir auch noch weit vom Verst{\"a}ndnis des Ursprungs der Spezies entfernt sind, so hat diese Arbeit doch einen Beitrag zum besseren Verst{\"a}ndnis der Evolution auf dem Level der Proteine geleistet. Im Speziellen wurden neue Erkenntnisse {\"u}ber die Beziehung von Proteindom{\"a}nen und Dom{\"a}nenarchitekturen, sowie ihre Pr{\"a}ferenzen f{\"u}r Interaktionspartner im Interaktionsnetzwerk gewonnen.},
  subject      = {Evolution},
  language  = {en}
}
@article{FialaMaschwitz1992,
  author    = {Fiala, Brigitte and Maschwitz, Ulrich},
  title     = {Food bodies and their significance for obligate ant-association in the tree genus Macaranga (Euphorbiaceae)},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-32921},
  year      = {1992},
  abstract  = {The production of extrafloral nectar and food bodies plays an important role in many tropical ant-plant mutualisms. In Malaysia, a close association exists between ants and some species of the pioneer tree genus Macaranga (Euphorbiaccac). Macaranga is a very diverse genus which exhibits all stages ofintcraction with ants, from facultative to obligatory associations. The ants nest inside the hollow inlcrnodes and reed mainly on food budies provided by the plants. Food body production had previously been reported only in myrrnecophytic Macaranga species, where it is usually coneentrated on protected parts or the plants such as recurved stipules. We found that non-myrmecophytic Macaranga species also produce food bodies on leaves and stems, where they are collected by a variety or ants. Levels of food body production differ between facultatively and obligatorily ant-associated species but also among the various non-myrmecophytes. This may he rdated to the degree of interaction with ants. Food body production starts at a younger age in the myrmccophytic species than in the transitional or non-myrmcccophytic Macaranga. Although food bodies of the non-inhabited Macaranga species are collected by a variety of ants, there is nu evidence of association with specific ant species. Our observations suggest that food bodies enhance the evolution of ant-plant interactions. Production of food bodies alone, however, does not appear to be the most important factor for the development of obligate myrmccopllytism in Macaranga.},
  language  = {en}
}
@misc{FischerWeissenbergerScheer1991,
  author    = {Fischer, Dagmar and Weißenberger, Dieter and Scheer, Ulrich},
  title     = {Assigning functions to nucleolar structures},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-34258},
  year      = {1991},
  abstract  = {Nucleoli provide the fascinating possibility of linking morphologically distinct structures such as those seen in the electron microscope with biochemical f eatures of the formation and step wise maturation of ribosomes. Localization of proteins by immunocytochemistry and of rRNA genes and their transcripts by in situ hybridization has greatly improved our understanding of the structural-functional relationships of the nucleolus. The present review describes some recent results obtained by electron microscopic in situ hybridization and argues that this approach has the potential to correlate each step of the complex pre-rRNA maturation pathway with nucleolar structures. Evidence is accumulating that the nucleolus-specific U3 snRNPs (small nuclear ribonucleoprotein particles) participate in rRNA processing events, similar to the role played by the nucleoplasmic snRNPs in mRNA maturation. The intranucleolar distribution of U3 snRNA is consistent with the view that it is involved in both early and late stages of pre-rRNA processing.},
  language  = {en}
}
@article{Scheer1987,
  author    = {Scheer, Ulrich},
  title     = {Structure of lampbrush chromosome loops during different states of transcriptional activity as visualized in the presence of physiological salt concentrations},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-39304},
  year      = {1987},
  abstract  = {Lampbrush chromosomes of amphibian oocytes were isolated in the presence of near-physiological salt concentrations, to preserve their native state, and studied by electron microscopy of ultrathin s~dions. The transcriptional state of the lampbrush chromosomes was experimentally modulated by incubating the oocytes for various time periods in medium containing actinomycin D. The observations show that the structure of the lateral loops changes rapidly in response to alterations in transcriptional activity. During decreasing transcriptional activity and reduced packing density of transcripts, the chromatin axis first condensed into nucleosomes and then into an approximately 30 nm thick higher order chromatin fiber. Packaging of the loop axis into supranucleosomal structures may contribute to the foreshortening and retraction of the loops observed during inhibition of transcription and in later stages of meiotic prophase. The increasing packing density of the DNA during the retraction process of the loops could also be visualized by immunofluorescence microscopy using antibodies to DNA. The dependence of the loop chromatin structure on transcriptional activity is discussed in relation to current views of mechanisms involved in gene activation.},
  language  = {en}
}
@article{ThiryScheerGoessens1988,
  author    = {Thiry, Marc and Scheer, Ulrich and Goessens, Guy},
  title     = {Localization of DNA within Ehrlich tumour cells nucleoli by immunoelectron microscopy},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-39327},
  year      = {1988},
  abstract  = {The distribution of DNA in Ehrlich tumour cell nucleoli was investigated by means of an immunocytochemical approach , involving a monoclonal antibody directed against double- and single-stranded DNA. Immunolabelling was performed . either before or after the embedding process. The postembedding labelling method allows better ultrastructural preservation than the preembedding labelling method. In particular, the various nucleolar components are well preserved and identifiable. In the nucleolus, labelling is particularly concentrated over the perinucleolar chromatin and over its intranucleolar invaginations, which penetrate the nucleolar body and often terminate at the fibrillar centres. In addition, aggregates of gold particles are found in the fibrillar centres, preferentially towards the peripheral regions. By contrast, the dense fibrillar component is completely devoid of labelling. The results seem to indicate that DNA containing the rDNA genes is located in the fibrillar centres, with a preference for the peripheral regions. This finding suggests that transcription of the rDNA genes should occur within the confines of the fibrillar centre, probably close to the boundary region of the surrounding dense fibrillar component. The results are discussed in the light of present knowledge of the functional organization of the nucleolus.},
  language  = {en}
}
@incollection{ScheerSpringTrendelenburg1979,
  author    = {Scheer, Ulrich and Spring, Herbert and Trendelenburg, Michael F.},
  title     = {Organization of transcriptionally active chromatin in lampbrush chromosome loops},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-39293},
  publisher      = {Universit{\"a}t W{\"u}rzburg},
  year      = {1979},
  abstract  = {No abstract available},
  language  = {en}
}
@incollection{FrankeScheerSpringetal.1979,
  author    = {Franke, Werner W. and Scheer, Ulrich and Spring, Herbert and Trendelenburg, Michael F. and Zentgraf, Hanswalter},
  title     = {Organization of nucleolar chromatin},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-39410},
  publisher      = {Universit{\"a}t W{\"u}rzburg},
  year      = {1979},
  abstract  = {No abstract available},
  language  = {en}
}
@article{BenaventeSchmidtZachmannHuegleDoerretal.1988,
  author    = {Benavente, Ricardo and Schmidt-Zachmann, Marion S. and H{\"u}gle-D{\"o}rr, B. and Reimer, G. and Rose, K. M. and Scheer, Ulrich},
  title     = {Identification and definition of nucleolus-related fibrillar bodies in micronucleated cells},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-39423},
  year      = {1988},
  abstract  = {Small nucleolus-related bodies which occur in the nUcleoplasm of " micronuclei" lacking nucleolar organizers have been studied by immunofluorescence microscopy. These bodies stained specifically with three different antibodies directed against proteins that are normally associated with the dense fibrillar component of functional nucleoli, but not with antibodies specific for certain proteins of the granular component or the fibrillar centers. Our data show that, in the absence of rRNA genes, the various constituent proteins characteristic of the dense fibrillar component spontaneously assemble into spherical entities but that the subsequent fusion of these bodies into larger structures is prevented in these micronuclei. The similarity between these nucleolus-related bodies of micronuclei and the prenucleolar bodies characteristic of early stages of nucleologenesis during mitotic telophase is discussed.},
  language  = {en}
}
@inproceedings{DabauvalleWilkenEwaldetal.1994,
  author    = {Dabauvalle, M.-C. and Wilken, N. and Ewald, A. and Kuhbier, A. and Sen{\´e}cal, J.-L. and Scheer, Ulrich},
  title     = {Nuclear pore complex structure analyzed by immunogold EM with human autoantibodies},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-39439},
  year      = {1994},
  abstract  = {No abstract available},
  language  = {en}
}
@misc{ScheerBenavente1990,
  author    = {Scheer, Ulrich and Benavente, Ricardo},
  title     = {Functional and dynamic aspects of the mammalian nucleolus},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-34269},
  year      = {1990},
  abstract  = {Nucleoli are the sites of ribosome biogenesis. Transcription of the ribosomal RNA genes as well as processing and initial packaging of their transcripts with ribosomal and non-ribosomal proteins all occur within the nucleolus in an ordered manner and under defined topological conditions. Components of the nucleolus have been localized by immunocytochemistry and their functional aspects investigated by microinjection of antibodies directed against the enzyme responsible for rDNA transcription, RNA polymerase I. The role of nascent transcripts in postmitotic formation of nucleoli will be discussed.},
  language  = {en}
}
@article{KnechtScheer1968,
  author    = {Knecht, Sigrid and Scheer, Ulrich},
  title     = {Laut{\"a}ußerung und Verhalten des Azoren-Buchfinken (Fringilla coelebs moreletti Pucheran)},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-39479},
  year      = {1968},
  abstract  = {Einleitung und Methode S. 155. - Brutbiologie S. 155. - Motivgesang S. 157. - Sozialruf (Social Call) S. 161. - Entwicklung des Sozialrufs S. 164. - Brumimmungsruf (Regenruf) S. 165. - Flugruf S. 166. - Alarmruf eines Jungvogels S. 167. - Bestimmung der ReviergroBe S. 167. - Zusammenfassung S. 168. - Summary S. 168. - Literaturverzeichnis S. 169. Es wird untersucht, ob die Azoren-Buchfinken "Rassengesang" und "Rassenrufe" haben. Gesange und Rufe wurden auf Tonband aufgenommen und klangspek trogra phiert. Motivgesang. Jedes cJ beherrscht 2-6 verschiedene Gesangsformen, wobei stets eine "Alltagsform" mit der stark vereinfachten Phrase di-djah endigt. Die anderen, weniger haufigeren Gesangsformen ("Sonntagsformen") zeigen eine besser ausgearbeitete Endphrase, die jedoch nie so kompliziert wie bei kontinentalen Buchfinken ist. In Gebieten, in denen sich bevorzugt Kanarienvogel aufhalten, konnen Buchfinken Gesangselemente iibernehmen. Sozialruf. Das kontinentale pink ist auf alIen Azoreninseln durch ga ersetzt, so daB man von einem Rassenruf sprechen kann. Er ist mit starker Aggressionsneigung verkniipft. Der Sozialruf zeigt einen weiten Frequenzumfang, hervorgerufen durch mehrere simultane Noten. Brutstimmungsruf (Regenruf). Eine Anzahl verschiedener Rufe wurde spektrographiert. Vom cJ ist er bei maBiger Gefahr, aber auch spontan (30-70 Rufe/Min.) zu horen. Flugruf. Er scheint mit dem Flugruf der Nominatform identisch zu sein. Bestimmung der Reviergrope. Ein cJ wurde innerhalb seines Reviers an die "akustische Leine" genommen und bis zu den Reviergrenzen gezogen. Verhalten und LautauBerung anderten sich in Abhangigkeit von der jeweiligen Entfernung bis zur Reviergrenze.},
  subject      = {Tierpsychologie},
  language  = {de}
}
@inproceedings{Scheer1982,
  author    = {Scheer, Ulrich},
  title     = {Electron microscopic analysis of chromatin and gene expression},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-39456},
  year      = {1982},
  abstract  = {No abstract available},
  language  = {en}
}
@inproceedings{FrankeZentgrafScheer1978,
  author    = {Franke, Werner W. and Zentgraf, Hanswalter and Scheer, Ulrich},
  title     = {Supranucleosomal and non-nucleosomal chromatin configurations},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-39447},
  year      = {1978},
  abstract  = {A significant contribution to the understanding of chromatin organization was the d iscovery of the nucleosome as a globular repeating unit of the package of DNA (Hewish and Burgoyne, 1973; Woodcock, 1973; Kornberg, 1974; Olins and Olins, 1974; for review see Oudet et al., 1978 a) . In accord with the original definition and in ag reement with most workers in this field of research we identify a nucleosome as a spheric alor slightly oblate gr anular particle 10-13 nm in diameter, containing about 200 base pairs of DNA and two of each of the four his tones H2a, H2b, H3 and H4. It is this structure in which the bulk of the nuclear chroma tin is organized in most eukaryotic cells, with the exception of the dinofl age llates (Rae and Steele, 1977; dinofl agellate DNA, however, c an be packed into nucleosoma l structures in vitro by addition of the appropriate amounts of histones;the same reference). Although it seems clear from the work reported that condensed and transcriptiona lly inactive chroma tin is contained in nucleosomes as the principle for first order p acking of DNA there are two important questions onto which we are focusing in the present study: ( i ) What is the higher order of p a cking present in - and perhaps typical-of - the condensed sta te of chromatin, and (ii) what is the specific form of arrangement of transcriptionally a ctive chromatin?},
  language  = {en}
}
@article{FrankeScheerHerth1974,
  author    = {Franke, Werner W. and Scheer, Ulrich and Herth, Werner},
  title     = {Cytology, general and molecular cytology},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-39499},
  year      = {1974},
  abstract  = {The present article had originally been conceived as a review on endomembranes, the plasma membrane, and the major product of membrane-bound activities, the cell wall material. However, limitations of space and the cascading number of pertinent literature articles made it necessary to confine this to one group of membranes and one type of cell wall components. Therefore, we shall begin our survey on the biochemical and cytological aspects of membranes by a review of the class of the pore complex bearing endomembranes, i.e. the nuclear envelope and the annulate lamellae (AL). Next year the membranes of the endoplasmic reticulum and the dictyosomes will be dealt with in conjunction with a discussion of the various intracellular vesicles, the tonoplast and the plasmalemma.},
  subject      = {Botanik},
  language  = {en}
}
@article{Scheer1972,
  author    = {Scheer, Ulrich},
  title     = {The ultrastructure of the nuclear envelope of amphibian ooctyes: IV. On the chemical nature of the nuclear pore complex material},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-39500},
  year      = {1972},
  abstract  = {In order to investigate the chemical composition of the nuclear pore complexes isolated nuclei from mature Xenopus laevis oocytes were manually fractioned into nucleo· plasmic aggregates and the nuclear envelopes. The whole isolation procedure takes no more than 60- 90 sec, and the pore complexes of the isolated envelopes are well preserved as demonstrated by electron microscopy. Minor nucleoplasmic and cytoplasmic contaminations associated with the isolated nuclear envelopes were determined with electron microscopic morphometry and were found to be quantitatively negligible as far as their mass and nucleic acid content is concerned. The RNA content of the fractions was determined by direct phosphorus analysis after differential alkaline hydrolysis. Approximately 9\% of the total nuclear RNA of the mature Xenopus egg was found to be attached to the nuclear envelope. The nonmembranous elements of one pore complex contain 0.41 X 10- 16 g RNA. This value agrees well with the content estimated from morphometric data. The RNA package density in the pore complexes (270 X 10- 15 g/fJ-3) is compared with the nucleolar, nucleoplasmic and cytoplasmic RNA concentration and is discussed in context with the importance of the pore complexes for the nucleo-cytoplasmic transport of RNA-containing macromolecules. Additionally, the results of the chemical analyses as well as of the 3H-actinomycin D autoradiography and of the nucleoprotein staining method of Bernhard (1969) speak against the occurence of considerable amounts of DNA in the nuclear pore complex structures.},
  language  = {en}
}
@article{FrankeKartenbeckKrienetal.1972,
  author    = {Franke, Werner W. and Kartenbeck, J{\"u}rgen and Krien, S. and VanderWoude, W. J. and Scheer, Ulrich and Morr{\´e}, D. J.},
  title     = {Inter- and intracisternal elements of the Golgi apparatus: A system of membrane-to-membrane cross-links},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-39514},
  year      = {1972},
  abstract  = {Electron opaque cross-bridge structures span the inter- and intracisternal spaces and provide membrane-to-membrane connections between adjacent cisternae of dictyosomes of pollen tubes of Clivia and Lilium. Additionally, the classic intercisternal rods, characteristic of intercisternal regions near the maturing face of dictyosomes, are connected with the adjacent membranes through similar cross-bridge elements. We suggest that these structural links are responsible for maintaining the flattened appearance of the central parts of Golgi apparatus cisternae as well as for the coherence of cisternae within the stack. Observations on other plant (e.g. microsporocytes of Canna) and animal cells (e.g. rodent liver and hepatoma cells, newt spermatocytes) show that such an array of membrane cross-links is a universal feature of Golgi apparatus architecture. The cross-bridges appear as part of the complex "zone of exclusion" which surrounds dictyosomes, entire Golgi apparatus and Golgi apparatus equivalents in a variety of cell types.},
  language  = {en}
}
@article{ScheerKartenbeckTrendelenburgetal.1976,
  author    = {Scheer, Ulrich and Kartenbeck, J{\"u}rgen and Trendelenburg, Michael F. and Stadler, Joachim and Franke, Werner W.},
  title     = {Experimental disintegration of the nuclear envelope: evidence for pore-connecting fibrils},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-39735},
  year      = {1976},
  abstract  = {The disintegration of the nuclear envelope has been examined in nuclei and nuclear envelopes isolated from amphibian oocytes and rat liver tissue, using different electron microscope techniques (ultrathin sections and negatively or positively stained spread preparations). Various treatments were studied, including disruption by surface tension forces, very low salt concentrations, and non ionic detergents such as Triton X-lOO and Nonidet P-40. The high local stability of the cylinders of nonmembranous pore complex material is emphasized. As progressive disintegration occurred in the membrane regions, a network of fibrils became apparent which interconnects the pore complexes and is distinguished from the pore complexassociated intranuclear fibrils. This network might correspond to an indistinct lamella, about 15 - 20 nm thick, located at the level of the inner nuclear membrane, which is recognized in thin sections to bridge the interpore distances. With all disintegration treatments a somewhat higher susceptibility of the outer nuclear membrane is notable, but a selective removal does not take place. Final stages of disintegration are generally characterized by the absence of identifiable, membrane- like structures. Analysis of detergent-treated nuclei and nuclear membrane fractions shows almost complete absence of lipid components but retention of significant amount of glycoproteins with a typical endomembrane-type carbohydrate pattern. Various alternative interpretations of these observations are discussed. From the present observations and those of Aaronson and Blobel (1,2), we favor the notion that threadlike intrinsic membrane components are stabilized by their attachment to the pore complexes, and perhaps also to peripheral nuclear structures, and constitute a detergent-resistant, interpore skeleton meshwork.},
  language  = {en}
}
@article{TrendelenburgScheerFranke1973,
  author    = {Trendelenburg, Michael F. and Scheer, Ulrich and Franke, W. W.},
  title     = {Structural organization of the transcription of ribosomal DNA in oocytes of the house cricket},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-33113},
  year      = {1973},
  abstract  = {No abstract available},
  language  = {en}
}
@article{ScheerRaska1987,
  author    = {Scheer, Ulrich and Raska, I.},
  title     = {Immunocytochemical localization of RNA polymerase I in the fibrillar centers of nucleoli},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-39618},
  year      = {1987},
  abstract  = {No abstract available},
  language  = {en}
}
@incollection{Scheer1987,
  author    = {Scheer, Ulrich},
  title     = {Contributions of electron microscopic spreading preparations ("Miller-spreads") to the analysis of chromosome structure},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-39625},
  publisher      = {Universit{\"a}t W{\"u}rzburg},
  year      = {1987},
  abstract  = {No abstract available},
  subject      = {Eukaryonten / Chromosom},
  language  = {en}
}
@article{FischerHockScheer1993,
  author    = {Fischer, Dagmar and Hock, Robert and Scheer, Ulrich},
  title     = {DNA Topoisomerase II is not detectable on lampbrush chromosomes but enriched in the amplified nucleoli of xenopus oocytes},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-32654},
  year      = {1993},
  abstract  = {In somatic cells DNA topoisomerase II (topo II) is thought to be involved in the domain Organization of the genome by anchoring the basis of chromatin loops to a chromosomal scafFold. Lampbrush chromosomes of am-phibian oocytes directly display this radial loop Organization in cytological preparations. In order to find out whether topo II may play a role in the Organization of these meiotic chromosomes, we performed immunofluorescence studies using antibodies against Xenopus topo II. Our results indicate that topo II is apparently absent from lampbrush chromosomes and is hence unlikely to act as a "fastener" of the numerous lateral chromosomal loops. Topo II was, however, enriched in the amplified nucleoli of Xenopus oocytes.},
  language  = {en}
}
@article{FrankeScheer1972,
  author    = {Franke, Werner W. and Scheer, Ulrich},
  title     = {Structural details of dictyosomal pores},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-32155},
  year      = {1972},
  abstract  = {Structural details of the dictyosomal pores in several plant cell types are described from tangential and cross sections of Golgi cisternae. Frequency distributions of the sizes of such Golgi pores are given and compared with the corresponding values of nuclear pores in the same cells. Golgi pore inner diameters are less homogeneously distributed and can be as small as 100 A or less. They are not simply cisterna I holes, but are often associated with centrally located electron dense granules or rods and with inner pore filaments. This organization, which is very common in dictyosomal pores in plant and animal cells, has some similarities with the structural architecture of nuclear envelope and annulate lamellar pore complexes. The particulate material associated with the dictyosomal pores shows spatial and structural relationship to cytoplasmic ribosomes. Possible modes of Golgi pore formation and some consequences of these observations for interpretation of nuclear pore structures are discussed.},
  language  = {en}
}
@article{Scheer1982,
  author    = {Scheer, Ulrich},
  title     = {Biologische Objekte im Transmissions-Elektronenmikroskop (Teil 4): Spreitungstechniken},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-39652},
  year      = {1982},
  abstract  = {Visualizing nucleic acids (DNA, RNA), nucleoprotein complexes and chromatin requires the use of special electron microscopicspreading techniques. In part 4 (27 refs.), methods are outlined for spreading DNA and RNA molecules for electron microscopic observation, these methods using modifications of the basic protein film method developed by A. Kleinschmidt and R. K. Zahn (1959). Hybridization techniques that allow the observation of heteroduplexes formed between two DNA molecules or between DNA and RNA molecules are reviewed, with special emphasis being placed on the DNA-RNA hybrids as a tool for elucidating RNA splicing. Techniques for studying DNA-protein interactions without the use of a protein monolayer film are mentioned. Finally, the "Miller spreading technique" for visualizing the nucleosomal organization of eukaryotic chromatin as well as the transcription of genes is discribed and illustrated.},
  language  = {de}
}
@article{ScheerKnecht1971,
  author    = {Scheer, Ulrich and Knecht, Sigrid},
  title     = {Die V{\"o}gel der Azoren},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-39668},
  year      = {1971},
  abstract  = {W{\"a}hrend einer viermonatigen Reise zu allen neun Azoreninseln wurde der gesamte Brutvogelbestand dieses Archipels untersucht. Die Befunde sind in einer detaillierten Artenliste zusammengefaßt, erg{\"a}nzt durch {\"o}kologische und brutbiologische Anmerkungen. Zahlreiche Beobachtungen lassen vermuten, daß vor allem Stieglitz und Kanarienvogel t{\"a}gliche und auch jahreszeitlich bedingte interinsulare Fl{\"u}ge unternehmen. Die Laut{\"a}ußerungen sechs verschiedener Vogel arten sind in Klangspektrogrammen dargestellt. Ein mathematischer Ansatz zeigt, daß sich die Anzahl der auf einer bestimmten Insel br{\"u}tenden Landvogelarten umgekehrt proportional zur Entfernung zum europ{\"a}ischen Festland und proportional zum Logarithmus naturalis der Inselfl{\"a}che verh{\"a}lt. Die abgeleitete Formel l{\"a}ßt sich prinzipiell auch auf andere Atlantikinseln anwenden, die weitgehend vom Festland isoliert sind.},
  language  = {de}
}
@article{FrankeScheerSpringetal.1976,
  author    = {Franke, Werner W. and Scheer, Ulrich and Spring, Herbert and Trendelenburg, Michael F. and Krohne, G.},
  title     = {Morphology of transcriptional units of rDNA: evidence for transcription in apparent spacer intercepts and cleavages in the elongating nascent RNA},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-39681},
  year      = {1976},
  abstract  = {Several types of "irregular" structures in the arrangement of lateral fibrils were noted in electron microscopic preparations of transcriptionally active nucleolar chromatin from various plant and animal cells. Such forms include: I. Disproportionately long lateral fibrils which occur either as individual fibrils or in groups; 2. "Prelude complexes" and other arrangements of lateral fibrils in apparent spacer intercepts; 3. Thickening of the rDNA chromatin axis at the starting end of pre-rRNA matrix units; 4. Extremely long matrix units , the length of which exceeds that of the rDNA (double-strand) sequence complementary to the specific pre-rRN A (for abbreviations see text). In addition, the stability of high molecular weight RNAs contained in the nucleolar ribonucleoproteins during the preparation for electron microscopy was demonstrated by gel electrophoresis. The observations indicate that the morphological starting point of a pre-rRNA matrix unit is not necessarily identical with the initiation site for synthesis of pre-rRNA, but they rather suggest that the start of the transcriptional unit is located at least O.2-D.8 JLm before the matrix unit and that parts of the "apparent spacer" are transcribed. It is proposed that the pre-rRN A molecules do not represent the primary product of rDNA transcription but rather relatively stable intermediate products that have already been processed during transcription.},
  language  = {en}
}
@article{Linsenmair1979,
  author    = {Linsenmair, Karl Eduard},
  title     = {Untersuchungen zur Soziobiologie der W{\"u}stenassel Hemilepistus reaumuri und verwandter Isopodenarten (Isopoda, Oniscoidea): Paarbildung und Evolution der Monogamie},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-30854},
  year      = {1979},
  abstract  = {The desert isopod, Hemilepistus reaumuri, extremely common in the arid regions of North Africa and Asia Minor, depends upon the burrows it itself digs for survival during the hotter parts of the year. The dig-ging of new burrows is limited by chmatic conditions to a short period during the spring. Burrows must be constantly defendet - especially against roving eonspecifics. The decisive problem of a connnuous burrow defense is solved through cooperative behavior: the adult woodlice form monogamous pairs whose partners recognize one another individually. Here, questions on the binding of partners, especially the problem of the binding of male to female will be treated upon, along with questions on the evolution of monogamy, wherein the purely maternal families of Porcellio species will be taken as models for intermedi{\"a}re stages. At first, males olHemilepistus are not permitted to copulate at all; later, for a relatively long period, they are only permitted incomplete copulations, the females alone have control over the partunal ecdysis; they alone determine the moment of final copulations. Under the thermal conditions prevalent during the season of pair formation, a female irreversibly induces a parturial ecdysis only when it has spent a minimum of sev-eral days in her own burrow with a specific male. At higher average temperatures, the number of females which undergo parturial ecdyses without these preconditions increases sharply. Males cannot greatly lnrlu-ence the willingness of females to reproduce with the investment they make in the digging of burrows; the factors deciding this are the male's presence and its role as guard. The first condition necessary for the genesis of monogamy might have been the evolution of a stnc{\"u}y lo-cation-dependent copulatory behavior, which guaranteed the male exclusive mating pnveliges with the female whose location - the burrow - he acheived control of. A male must, under these conditions, serve guard duty in his own interest, and defend the burrow against competitors (Cf or 2) seeking an already-dug burrow. The decisive advantage for the female in the beginning of the development was probably that she could leave the burrow for extended feeding excursions, whereas alone it would have to either completely forego nourishment or, as is the case with the Porcellio species mentioned, must greatly restrict the spectrum of food that it can use (to that which is to be found only a short distance from the burrow and which can eas-ily be carried inside the burrow). This could be a disadvantage, especially during egg production. Necessary to the male's successful defense of the burrow is that he recognises his female. Studies of the Canary Island Porcellio species have shown over which pathways and under what selection pressures the recopinon of individuals, as is realized mHemilepistus, could have evolved. Females can bind males longer, the longer the period of their attraction is extended: Females olHemilepistus reaumuri have been proven to be al·ready att-ractive before they are ready to copulate and still remain attractive after they have copulated. The conse-quences of the last fact will be discussed. The question of why the males remain with the females after the parturial ecdysis will also be discussed: The great danger to the male's investment resulting from a tooi early abandoning, and the low probability of successfully finding another partner after a later abandomng should prevent a positive balance in the males' cost-effecriveness calculations.},
  language  = {de}
}
@article{FialaLinsenmairMaschwitz1994,
  author    = {Fiala, Brigitte and Linsenmair, Karl Eduard and Maschwitz, Ulrich},
  title     = {Diversit{\"a}t von Interaktionen zwischen Ameisen und Pflanzen im s{\"u}dostasiatischen Regenwald},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-32894},
  year      = {1994},
  abstract  = {Assoziationen von Ameisen mit Pflanzen (und oft noch mit pflanzensaugenden Insekten als drittem Partner) d{\"u}rften eine Ursache des Artenreichtums und der hohen Abundanzen tropischer Formicidae sein. Die von den Ameisen genutzten Pflanzen bieten entweder Nahrung an, {\"u}ber extraflorale Nektarien und/oder N{\"a}hrk{\"o}rperchen, oder aber - bei den eigentlichen Myrmekophyten - Nistraum und z.T. auch Nahrung. Diese Beziehungen zeichnen sich durch unterschiedliche Nutzungsweisen und Nutzungsintensit{\"a}ten und damit stark differierende Abh{\"a}ngigkeit der Partner voneinander aus. Ein besonders breites Spektrum von Ameisen-Pflanzen-Assoziationen finden wir in der pal{\"a}otropischen Baumgattung Macaranga (Euphorbiaceae), die sich daher als Modellsystem f{\"u}r vergleichende Untersuchungen hervorragend eignet. Die Grundfrage unserer Untersuchungen an diesem System lautet: Verl{\"a}uft aufgrund der ausgepr{\"a}gt mosaikartigen Verteilung der von den myrmekophilen Pflanzen angebotenen Nahrungs- und Nistraumressourcen die Neu- und Wiederbesiedlung von Habitaten durch die Ameisen in Form von Zufallsprozessen? Oder werden, im Gegenteil, durch diesen Umstand Spezialisierungen seitens der Ameisen gef{\"o}rdert und die Zusammensetzung der Lebensgemeinschaften dadurch st{\"a}rker deterministisch gepr{\"a}gt? Unsere bisherigen Untersuchungen zeigen, daß beide Prinzipien wirken. Bei der alleinigen Nutzung von Nahrungsressourcen fehlen spezialisierte Beziehungen weitgehend und stochastische Ereignisse d{\"u}rften sehr h{\"a}ufig die Pflanzen-Ameisen-Assoziation bestimmen. Bei den eigentlichen Myrmekophyten hingegen ist die Auswahl der assozierten Ameisen viel st{\"a}rker determiniert, ganz besonders dann, wenn der Wohnraum, den die Pflanze offeriert, nur durch aktives {\"O}ffnen seitens der Ameisen erschlossen werden kann.},
  language  = {de}
}
@article{ScheerSommervilleMueller1980,
  author    = {Scheer, Ulrich and Sommerville, John and M{\"u}ller, Ulrike},
  title     = {DNA is assembled into globular supranucleosomal chromatin structures by nuclear contents of amphibian oocytes},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-39671},
  year      = {1980},
  abstract  = {The assembly of DNA into nucleosomal and supranucleosomal chromatin structures has been studied (i) by injection of circular DNA molecules (plasmids) into nuclei of Pleurodeles waltlii oocytes; and (ii) by in vitro incubation of plasmid molecules with the supernatant fraction from oocyte nuclei of Pleurodeles and Xenopus laevis, followed by purification of nucleoprotein structures formed with sucrose gradient centrifugation. [n both types of experiments , spread preparations of the newly assembled and transcriptionally inactive chromatin , examined by electron microscopy , show dense globular higher order (supranucleosomal) packing forms. Under partially relaxing (low salt) preparation conditions granular chromatin subunits of about 30 nm diameter can be seen either as widely spaced particles or in closely packed aggregates. The transcriptionally inactive endogenous chromatin of chromomeres of lampbrush chromosomes is arranged in similar higher order chromatin units. A correlation is found between the sizes of the DN A molecule probes used and the numbers of nucleosomes and higher order globules in the assembled chromatin structures. After prolonged dispersion in low salt buffers , these globular chromatin units unfold into chains of7-12 nucleosomes. The results support the concept that chromatin is arranged , under physiological ion concentrations as they are present in the nucleus , in supranucleosomal units of globular morphology.},
  language  = {en}
}
@article{HuegleHazanScheeretal.1985,
  author    = {H{\"u}gle, Barbara and Hazan, Rachel and Scheer, Ulrich and Franke, Werner W.},
  title     = {Localization of ribosomal protein S1 in the granular component of the interphase nucleolus and its distribution during mitosis},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-39695},
  year      = {1985},
  abstract  = {Using antibodies to various nucleolar and ribosomal proteins, we define, by immunolocalization in situ, the distribution of nucleolar proteins in the different morphological nucleolar subcompartments. In the present study we describe the nucleolar localization of a specific ribosomal protein (51) by immunofluorescence and immunoelectron microscopy using a monoclonal antibody (R5 1-105). In immunoblotting experiments, this antibody reacts specifically with the largest and most acidic protein of the small ribosomal subunit (51) and shows wide interspecies cross-reactivity from amphibia to man. Beside its localization in cytoplasmic ribosomes, this protein is found to be specifically localized in the granular component of the nucleolus and in distinct granular aggregates scattered over the nucleoplasm. This indicates that ribosomal protein 51, in contrast to reports on other ribosomal proteins, is not bound to nascent pre-rRNA transcripts but attaches to preribosomes at later stages of rRNA processing and maturation. This protein is not detected in the residual nucleolar structures of cells inactive in rRNA synthesis such as amphibian and avian erythrocytes. During mitosis, the nucleolar material containing ribosomal protein 51 undergoes a remarkable transition and shows a distribution distinct from that of several other nucleolar proteins. In prophase, the nucleolus disintegrates and protein 51 appears in numerous small granules scattered throughout the prophase nucleus. During metaphase and anaphase, a considerable amount of this protein is found in association with the surfaces of all chromosomes and finely dispersed in the cell plasm. In telophase, protein 51-containing material reaccumulates in granular particles in the nucleoplasm of the newly formed nuclei and, finally, in the re-forming nucleoli. These observations indicate that the nucleolus-derived particles containing ribosomal protein 51 are different from cytoplasmic ribosomes and, in the living cell, are selectively recollected after mitosis into the newly formed nuclei and translocated into a specific nucleolar subcompartment, i.e ., the granular component. The nucleolar location of ribosomal protein 51 and its rearrangement du'ring mitosis is discussed in relation to the distribution of other nucleolar proteins.},
  subject      = {Cytologie},
  language  = {en}
}
@article{ScheerHinssenFrankeetal.1984,
  author    = {Scheer, Ulrich and Hinssen, Horst and Franke, Werner W. and Jockusch, Brigitte M.},
  title     = {Microinjection of actin-binding proteins and actin antibodies demonstrates involvement of nuclear actin in transcription of lampbrush chromosomes},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-39706},
  year      = {1984},
  abstract  = {Nuclei of amphibian oocytes contain large amounts of actin, mostly in unpolymerized or short-polymer form. When antibodies to actin or actin-binding proteins (fragmin and the actin modulator from mammalian smooth muscle) are injected into nuclei of living oocytes of Pleurodeles waltlii, transcription of the lampbrush chromosomes, but not of the rRNA genes, is inhibited. When transcription is repressed by drugs or RNA is digested by microinjection of RNAase into oocyte nuclei, an extensive meshwork of actin filament bundles is seen in association with the isolated lampbrush chromosomes. These observations indicate a close relationship between the state of nuclear actin and transcriptional activity and suggest that nuclear actin may be involved in transcriptional events concerning protein-coding genes.},
  language  = {en}
}
@article{ScheerHansmannFalketal.1986,
  author    = {Scheer, Ulrich and Hansmann, Paul and Falk, Heinz and Sitte, Peter},
  title     = {Ultrastructural localization of DNA in two Cryptomonas species by use of a monoclonal DNA-antibody},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-39746},
  year      = {1986},
  abstract  = {Immunogold cytochemistry - DNA localization - Cryptomonas nucleomorph The distribution and subcellular localization of DNA in the unicellular alga Cryptomonas has been investigated electron-microscopically by indirect immunocytochemistry, using a monoclonal DNA antibody and a gold-Iabeled secondary antibody. This technique proved to be very sensitive and entirely specific. DNA could be demonstrated in four different compartments (nucleus, nucleomorph, plastid, and mitochondrion). Within the plastid, DNA is concentrated in stroma regions that are localized preferentially around the center of the organelle. The mitochondrion contains several isolated DNA-containing regions (nucleoids). Within the nucleus, most of the DNA is localized in the 'condensed' chromatin. DNA was also detectable in small areas of the nucleolus, whereas the interchromatin space of the nucleus appeared almost devoid of DNA. Within the nucleomorph, DNA is distributed inhomogeneously in the matrix. DNA could furthermore be detected in restricted areas of the 'fibrillogranular body' of the nucleomorph, resembling the situation encountered in the nucleol us. The presence of DNA and its characteristic distribution in the nucleomorph provide additional, strong evidence in favour of the interpretation of that organelle as the residual nucleus of a eukaryotic endosymbiont in Cryptomonas.},
  subject      = {Cytologie},
  language  = {en}
}
@article{Scheer1978,
  author    = {Scheer, Ulrich},
  title     = {Changes of nucleosome frequency in nucleolar and non-nucleolar chromatin as a function of transcription: an electron microscopic study},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-39750},
  year      = {1978},
  abstract  = {The morphology of nucleolar and non-nucleolar (Iampbrush chromosome loops) chromatin was studied in the electron microscope during states of reduced transcriptional activity in amphibian oocytes (Xenopus laevis, Triturus alpestris, T. cristatus). Reduced transcriptional activity was observed in maturing stages of oocyte development and after treatment with an inhibitor, actinomycin D. Strands of nucleolar chromatin appear smooth and thin, and contain only few, if any, nucleosomal particles in the transcribed units. This is true whether they are densely or only sparsely covered with lateral ribonucleoprotein fibrils. This smooth and non-nucleosomal character is also predominant in the interspersed, apparently nontranscribed rDNA spacer regions. During inactivation, however, nucleolar chromatin frequently and progressively assumes a beaded appearance in extended fibril-free-that is, apparently nontranscribed - regions. I n either fUll-grown 00- cytes or late after drug treatment, most of the nucleolar chromatin is no longer smooth and thin, but rather shows a beaded configuration indistinguishable from inactive non - nucleolar chromatin. In many chromatin strands, transitions of fibril-associated regions of smooth character into beaded regions wihout lateral fibrils are seen. Similarly, in the non-nucleolar chromatin of the retracting lampbrush chromosome loops, reduced transcriptional activity is correlated with a change from smooth to beaded morphology. Here, however, beaded regions are also commonly found interspersed between the more or less distant bases of the lateral fibrils, the putative transcriptional complexes. I n both sorts of chromatin, detergents (in particular Sarkosyl) that remove most of the chromatin proteins including histones from the DNA axis but leave the RNA polymerases of the transcriptional complexes attached were used to discriminate between polymerases and nucleosomal particles. The results suggest that nucleosomes are absent in heavily transcribed chromatin regions but are reformed after inactivation. In contrast to the findings with inactivated nucleolar genes, in lampbrush chromosome loops the beaded nucleosomal configuration appears to be assumed also in regions within transcriptional units that, perhaps temporarily, are not involved in transcription.},
  language  = {en}
}
@incollection{ScheerFranke1974,
  author    = {Scheer, Ulrich and Franke, Werner W.},
  title     = {Structures and functions of the nuclear envelope},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-39777},
  publisher      = {Universit{\"a}t W{\"u}rzburg},
  year      = {1974},
  abstract  = {No abstract available},
  subject      = {Zellkern},
  language  = {en}
}
@article{ScheerSommerville1981,
  author    = {Scheer, Ulrich and Sommerville, J.},
  title     = {Structural organization of nascent transcripts and hnRNA molecules in amphibian oocytes},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-39765},
  year      = {1981},
  abstract  = {Comparisons ofrelative lengths oflampbrush loops, nascent RNP transcripts and hnRNA molecules from oocytes of amphibia with different C-values show that there is an increasing trend in loop, and transcriptional unit, length with increase in genome size but no increasing trend with respect to RN A contour length.The formation of duplex regions and circles in RNP fibrils indicates that RNA processing may occur within the nascent fibrils. The hnRNA molecules from oocytes of the various amphibia readily form intermolecular duplex structures. These complementary sequences have a low kinetic complexity and are transcribed from highly repetitive sequences distributed throughout the genome. Their possible function is considered.},
  language  = {en}
}
@article{ScheerSchmidtZachmannHuegleetal.1984,
  author    = {Scheer, Ulrich and Schmidt-Zachmann, Marion S. and H{\"u}gle, Barbara and Franke, Werner W.},
  title     = {Identification and localization of a novel nucleolar protein of a high molecular weight by a monoclonal antibody},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-39786},
  year      = {1984},
  abstract  = {A monoclonal murine antibody (No-I 14) is described which reacts specifically with a polypeptide of molecular weight (M,) 180000 present in low-speed nuclear pellets from oocytes and somatic cells of Xenopus laevis and X. borealis and in isolated amplified nucleoli. Two-dimensional gel electrophoresis has revealed the acidic nature of this polypeptide (isoelectric at pH of ca 4.2 in the presence of 9.5 M urea). A relatively large proportion of the protein is extracted at elevated ionic strength( i.e., at 0.4-0.5 M alkali salt) in a form sedimenting at approx. 7-8S , compatible with a monomeric state. It is also extracted by digestion with RNase but not with DNase. In immunofluorescence microscopy, antibody No-114 stains intensely nucleoli of oocytes and all somatic cells examined , including the residual nucleolar structure of Xenopus erythrocytes which are transcriptionally inactive. During mitosis the antigen does not remain associated with the nucleolar organizer regions (NOR) of chromosomes but is released and dispersed over the cytoplasm until telophase when it re-associates with the reforming interphase nucleoli. At higher resolution the immunofluorescent region is often resolved into a number of distinct subnucleolar components of varied size and shape. Immunoelectron microscopy using colloidal gold-coupled secondary antibodies reveals that the M, 180000 protein is confined to the dense fibrillar component of the nucleolus. This conclusion is also supported by its localization in the fibrillar part of segregated nucleoli of cells treated with actinomycin D. We conclude that nucleoli contain a prominent protein of M, 180000 which contributes to the general structure of the dense fibrillar component of the interphase nucleolus , independent of its specific transcriptional activity.},
  language  = {en}
}
@article{ThiryScheerGoessens1991,
  author    = {Thiry, Marc and Scheer, Ulrich and Goessens, Guy},
  title     = {Localization of nucleolar chromatin by immunocytochemistry and in situ hybridization at the electron microscopic level},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-39289},
  year      = {1991},
  abstract  = {Nucleoli are the morphological expression of the activity of a defined set of chromosomal segments bearing rRNA genes. The topological distribution and composition of the intranucleolar chromatin as well as the definition of nucleolar structures in which enzymes of the rDNA transcription machinery reside have been investigated in mammalian cells by various immunogold labelling approaches at the ultrastructural level. The precise intranucleolar location of rRNA genes has been further specified by electron microscopic in situ hybridization with a non-autoradiographic procedure. Our results indicate that the fibrillar centers are the sole nucleolar structures where rDNA, core histones, RNA polymerase I and DNA to po isomerase I are located together. Taking into account the potential value and limitations of immunoelectron microscopic techniques, we propose that transcription of the rRNA genes takes place within the confines of the fibrillar centers, probably close to the boundary regions to the surrounding dense fibrillar component.},
  language  = {en}
}
@article{GesslerKoenigArdenetal.1994,
  author    = {Gessler, Manfred and K{\"o}nig, A. and Arden, K. and Grundy, P. and Orkin, S. H. and Sallan, S. and Peters, C. and Ruyle, S. and Mandell, J. and Li, F. and Cavenee, W. and Bruns, G. A.},
  title     = {Infrequent mutation of the WT1 gene in 77 Wilms' Tumors},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-34308},
  year      = {1994},
  abstract  = {Homozygous deletions in Wilms' tumor DNA have been a key step in the identification and isolation of the WTI gene. Several additional loci are also postulated to contribute to Wilms' tumor formation. To assess the frequency of WTI alterations we have analyzed the WTI locus in a panel of 77 Wilms' tumors. Eight tumors showed evidence for large deletions of several hundred or thousand kilobasepairs of DNA, some of which were also cytogenetically detected. Additional intragenic mutations were detected using more sensitive SSCP analyses to scan all 10 WTI exons. Most of these result in premature stop codons or missense mutations that inactivate the remaining WTI allele. The overall frequency of WTI alterations detected with these methods is less than 15\%. While some mutations may not be detectable with the methods employed, our results suggest that direct alterations of the WTI gene are present in only a small fraction of Wilms' tumors. Thus, mutations at other Wilms' tumor loci or disturbance of interactions between these genes likely play an important role in Wilms' tumor development.},
  language  = {en}
}
@phdthesis{Friedrich2009,
  author    = {Friedrich, Torben},
  title     = {New statistical Methods of Genome-Scale Data Analysis in Life Science - Applications to enterobacterial Diagnostics, Meta-Analysis of Arabidopsis thaliana Gene Expression and functional Sequence Annotation},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-39858},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2009},
  abstract  = {Recent progresses and developments in molecular biology provide a wealth of new but insufficiently characterised data. This fund comprises amongst others biological data of genomic DNA, protein sequences, 3-dimensional protein structures as well as profiles of gene expression. In the present work, this information is used to develop new methods for the characterisation and classification of organisms and whole groups of organisms as well as to enhance the automated gain and transfer of information. The first two presented approaches (chapters 4 und 5) focus on the medically and scientifically important enterobacteria. Its impact in medicine and molecular biology is founded in versatile mechanisms of infection, their fundamental function as a commensal inhabitant of the intestinal tract and their use as model organisms as they are easy to cultivate. Despite many studies on single pathogroups with clinical distinguishable pathologies, the genotypic factors that contribute to their diversity are still partially unknown. The comprehensive genome comparison described in Chapter 4 was conducted with numerous enterobacterial strains, which cover nearly the whole range of clinically relevant diversity. The genome comparison constitutes the basis of a characterisation of the enterobacterial gene pool, of a reconstruction of evolutionary processes and of comprehensive analysis of specific protein families in enterobacterial subgroups. Correspondence analysis, which is applied for the first time in this context, yields qualitative statements to bacterial subgroups and the respective, exclusively present protein families. Specific protein families were identified for the three major subgroups of enterobacteria namely the genera Yersinia and Salmonella as well as to the group of Shigella and E. coli by applying statistical tests. In conclusion, the genome comparison-based methods provide new starting points to infer specific genotypic traits of bacterial groups from the transfer of functional annotation. Due to the high medical importance of enterobacterial isolates their classification according to pathogenicity has been in focus of many studies. The microarray technology offers a fast, reproducible and standardisable means of bacterial typing and has been proved in bacterial diagnostics, risk assessment and surveillance. The design of the diagnostic microarray of enterobacteria described in chapter 5 is based on the availability of numerous enterobacterial genome sequences. A novel probe selection strategy based on the highly efficient algorithm of string search, which considers both coding and non-coding regions of genomic DNA, enhances pathogroup detection. This principle reduces the risk of incorrect typing due to restrictions to virulence-associated capture probes. Additional capture probes extend the spectrum of applications of the microarray to simultaneous diagnostic or surveillance of antimicrobial resistance. Comprehensive test hybridisations largely confirm the reliability of the selected capture probes and its ability to robustly classify enterobacterial strains according to pathogenicity. Moreover, the tests constitute the basis of the training of a regression model for the classification of pathogroups and hybridised amounts of DNA. The regression model features a continuous learning capacity leading to an enhancement of the prediction accuracy in the process of its application. A fraction of the capture probes represents intergenic DNA and hence confirms the relevance of the underlying strategy. Interestingly, a large part of the capture probes represents poorly annotated genes suggesting the existence of yet unconsidered factors with importance to the formation of respective virulence phenotypes. Another major field of microarray applications is gene expression analysis. The size of gene expression databases rapidly increased in recent years. Although they provide a wealth of expression data, it remains challenging to integrate results from different studies. In chapter 6 the methodology of an unsupervised meta-analysis of genome-wide A. thaliana gene expression data sets is presented, which yields novel insights in function and regulation of genes. The application of kernel-based principal component analysis in combination with hierarchical clustering identified three major groups of contrasts each sharing overlapping expression profiles. Genes associated with two groups are known to play important roles in Indol-3 acetic acid (IAA) mediated plant growth and development as well as in pathogen defence. Yet uncharacterised serine-threonine kinases could be assigned to novel functions in pathogen defence by meta-analysis. In general, hidden interrelation between genes regulated under different conditions could be unravelled by the described approach. HMMs are applied to the functional characterisation of proteins or the detection of genes in genome sequences. Although HMMs are technically mature and widely applied in computational biology, I demonstrate the methodical optimisation with respect to the modelling accuracy on biological data with various distributions of sequence lengths. The subunits of these models, the states, are associated with a certain holding time being the link to length distributions of represented sequences. An adaptation of simple HMM topologies to bell-shaped length distributions described in chapter 7 was achieved by serial chain-linking of single states, while residing in the class of conventional HMMs. The impact of an optimisation of HMM topologies was underlined by performance evaluations with differently adjusted HMM topologies. In summary, a general methodology was introduced to improve the modelling behaviour of HMMs by topological optimisation with maximum likelihood and a fast and easily implementable moment estimator. Chapter 8 describes the application of HMMs to the prediction of interaction sites in protein domains. As previously demonstrated, these sites are not trivial to predict because of varying degree in conservation of their location and type within the domain family. The prediction of interaction sites in protein domains is achieved by a newly defined HMM topology, which incorporates both sequence and structure information. Posterior decoding is applied to the prediction of interaction sites providing additional information of the probability of an interaction for all sequence positions. The implementation of interaction profile HMMs (ipHMMs) is based on the well established profile HMMs and inherits its known efficiency and sensitivity. The large-scale prediction of interaction sites by ipHMMs explained protein dysfunctions caused by mutations that are associated to inheritable diseases like different types of cancer or muscular dystrophy. As already demonstrated by profile HMMs, the ipHMMs are suitable for large-scale applications. Overall, the HMM-based method enhances the prediction quality of interaction sites and improves the understanding of the molecular background of inheritable diseases. With respect to current and future requirements I provide large-scale solutions for the characterisation of biological data in this work. All described methods feature a highly portable character, which allows for the transfer to related topics or organisms, respectively. Special emphasis was put on the knowledge transfer facilitated by a steadily increasing wealth of biological information. The applied and developed statistical methods largely provide learning capacities and hence benefit from the gain of knowledge resulting in increased prediction accuracies and reliability.},
  subject      = {Genomik},
  language  = {en}
}
@phdthesis{Basile2009,
  author    = {Basile, Rebecca},
  title     = {Thermoregulation and Resource Management in the Honeybee (Apis mellifera)},
  url       = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-39793},
  school      = {Universit{\"a}t W{\"u}rzburg},
  year      = {2009},
  abstract  = {Ein grundlegender Faktor, der f{\"u}r das {\"U}berleben einer Kolonie sozialer Insekten ausschlaggebend ist, liegt in der F{\"a}higkeit Nahrung durch sogenannte „Trophallaxis" auszutauschen. Diese F{\"u}tterungskontakte sorgen f{\"u}r die gleichm{\"a}ßige Verteilung der Nahrung innerhalb der Kolonie und werden als einer der Grundpfeiler der Sozialit{\"a}t der Staatenbildenden Insekten erachtet. Im Fall der Honigbienen finden diese Kontakte in vollkommener Dunkelheit statt. Damit es in dieser Situation {\"u}berhaupt zum Nahrungsaustausch kommen kann, sind die Antennen von großer Wichtigkeit. Ein erster Schritt in den Verhaltensweisen, die der Rezipient eines trophallaktischen Kontaktes zeigt, ist der Kontakt einer Antennenspitze mit den Mundwerkzeugen des Donoren, da sich dort die regurgitierte Nahrung befindet. Diese Ber{\"u}hrung hat aufgrund der gustatorischen Sensibilit{\"a}t der Antenne den Zweck, das angebotene Futter zu „erschmecken". Die rechte Antenne wird vom Rezipienten eines trophallaktischen Kontakts signifikant h{\"a}ufiger eingesetzt als die linke Antenne. Die Pr{\"a}ferenz f{\"u}r die rechte Antenne bleibt dabei auch erhalten, wenn ein Teil der Antennengeisel abgetrennt wurde, also die sensorischen F{\"a}higkeiten der rechten Antenne stark beeintr{\"a}chtigt wurden. Der Grund f{\"u}r die Pr{\"a}ferenz der rechten Antenne k{\"o}nnte ihrer erh{\"o}hten Sensibilit{\"a}t gegen{\"u}ber Zuckerwasser zugrunde liegen, da die rechte Antenne im Laborversuch signifikant st{\"a}rker auf Stimulationen mit Zuckerwasser verschiedener Konzentrationen reagierte als die linke. Trophallaktische Kontakte sichern Individuen innerhalb einer Kolonie den Zugang zur lebenswichtigen Nahrung. Im Beispiel der Honigbienen ist st{\"a}ndige Zugriff auf Nahrung besonders wichtig, da es sich um ein heterothermes Tier handelt, das die F{\"a}higkeit besitzt, aktiv seine K{\"o}rpertemperatur zu regulieren. Obgleich jedes Individuum in der Lage ist, seine K{\"o}rpertemperatur den eigenen Bed{\"u}rfnissen anzupassen, ist diese F{\"a}higkeit streng durch den in der Nahrung aufgenommenen Zucker reguliert. Im Gegensatz zu den S{\"a}ugetieren oder V{\"o}geln, die f{\"u}r eine Erh{\"o}hung des Blutzuckerspiegels auch auf Fett- oder Eiweißressourcen zur{\"u}ckgreifen k{\"o}nnen, ist die Honigbiene auf die Glucose aus der aufgenommenen Nahrung angewiesen. Die Ergebnisse dieser Untersuchung zeigen, dass der Zuckergehalt der aufgenommenen Nahrung positiv mit der Thoraxtemperatur der Bienen korreliert. Dieser Zusammenhang tritt auf, selbst wenn keine W{\"a}rmeerzeugung f{\"u}r die Brutpflege oder f{\"u}r das Erw{\"a}rmen der Wintertraube notwendig ist und die Tiere außerhalb des Stockes ohne eigentliche Notwendigkeit f{\"u}r die W{\"a}rmeerzeugung in einem K{\"a}fig gehalten werden. Die Ergebnisse der Untersuchung zeigen, dass die Rezipienten beim Nahrungsaustausch eine signifikant h{\"o}here Thoraxtemperatur haben als die Donoren. Außerdem zeigen die Rezipienten nach der F{\"u}tterung signifikant h{\"a}ufiger Brutw{\"a}rmeverhalten als die Donoren. Letztere haben eine signifikant niedrigere Thoraxtemperatur als die Rezipienten und zeigen eine Verhaltenstendenz, h{\"a}ufig zwischen Brutbereich und Honiglager hin- und her zu pendeln. Dabei nehmen sie im Honiglager Honig in ihren Kropf auf und f{\"u}ttern mit dieser Nahrung danach Bienen im Brutbereich. Außerdem zeigen die Ergebnisse, dass es einen w{\"a}rmegesteuerten Ausl{\"o}semechanismus gibt, der den Donoren und Rezipienten des trophallaktischen Kontakts dazu verhilft, trotz der Dunkelheit des Stocks praktisch verz{\"o}gerungsfreie Nahrungs{\"u}bertragung am Ort des h{\"o}chsten Energieverbrauchs zu gew{\"a}hrleisten. Das Hervorw{\"u}rgen von Nahrung angesichts einer W{\"a}rmequelle k{\"o}nnte seinen Ursprung in einer Beschwichtigungsgeste haben. Aggressive Tiere zeigen neben sichtbaren aggressiven Verhalten auch durch ihre erh{\"o}hte K{\"o}rpertemperatur, dass sie bereit sind sich auf einen Kampf einzulassen. Die Temperaturerh{\"o}hung eines aggressiven Tieres beruht dabei auf der erh{\"o}hten Muskelaktivit{\"a}t, die vor allem bei Insekten dazu n{\"o}tig ist, einen entsprechende Reaktion im Falle eines Kampfes oder der Flucht zeigen zu k{\"o}nnen. Wird ein Individuum mit Aggression konfrontiert, so bleibt ihm die Wahl sich auf einen Kampf einzulassen, zu fl{\"u}chten oder durch eine Beschwichtigungsgeste eine Deeskalation der Situation einzuleiten. Besonders h{\"a}ufig wird f{\"u}r diesen Zweck Nahrung regurgitiert und dem dominanteren Tier angeboten, um einem Konflikt aus dem Weg zu gehen. Die F{\"a}higkeit, Arbeiterinnen mit kleinen Portionen konzentrierter Nahrung zu versorgen tr{\"a}gt zu einer {\"o}konomischen Verteilung der Ressourcen bei, die mit den physiologischen Bed{\"u}rfnissen der Honigbienen konform geht und die {\"o}kologischen Erfordernisse des Stockes erf{\"u}llt. Das daraus resultierende Managementsystem, welches sparsam mit den Ressourcen haushaltet und auf die individuellen Bed{\"u}rfnisse jeder einzelnen Biene einzugehen vermag, k{\"o}nnte ein Grund f{\"u}r die F{\"a}higkeit der Honigbienen zur Entwicklung mehrj{\"a}hriger Kolonien sein, die, anders als Hummeln oder Wespen, auch den Winter in gem{\"a}ßigten Zonen als Gemeinschaft zu {\"u}berstehen verm{\"o}gen.},
  subject      = {Biene},
  language  = {en}
}