@unpublished{LambertVoelkerKochetal.2015, author = {Lambert, Christoph and V{\"o}lker, Sebastian F. and Koch, Federico and Schmiedel, Alexander and Holzapfel, Marco and Humeniuk, Alexander and R{\"o}hr, Merle I. S. and Mitric, Roland and Brixner, Tobias}, title = {Energy Transfer Between Squaraine Polymer Sections: From helix to zig-zag and All the Way Back}, series = {Journal of the American Chemical Society}, journal = {Journal of the American Chemical Society}, doi = {10.1021/jacs.5b03644}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-159607}, year = {2015}, abstract = {Joint experimental and theoretical study of the absorption spectra of squaraine polymers in solution provide evidence that two different conformations are present in solution: a helix and a zig-zag structure. This unique situation allows investigating ultrafast energy transfer processes between different structural segments within a single polymer chain in solution. The understanding of the underlying dynamics is of fundamental importance for the development of novel materials for light-harvesting and optoelectronic applications. We combine here femtosecond transient absorption spectroscopy with time-resolved 2D electronic spectroscopy showing that ultrafast energy transfer within the squaraine polymer chains proceeds from initially excited helix segments to zig-zag segments or vice versa, depending on the solvent as well as on the excitation wavenumber. These observations contrast other conjugated polymers such as MEH-PPV where much slower intrachain energy transfer was reported. The reason for the very fast energy transfer in squaraine polymers is most likely a close matching of the density of states between donor and acceptor polymer segments because of very small reorganization energy in these cyanine-like chromophores.}, language = {en} } @phdthesis{Kunz2018, author = {Kunz, Valentin}, title = {Supramolecular Approaches for Water Oxidation Catalysis with Ruthenium Complexes}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-154820}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2018}, abstract = {The catalytic splitting of water into its elements is an important reaction to establish hydrogen as a solar fuel. The bottle-neck of this process is considered to be the oxidative half reaction generating oxygen, and good catalysts are required to handle the complicated redox chemistry involved. As can be learned from nature, the incorporation of the catalytically active species into an appropriate matrix can help to improve the overall performance. Thus, the aim of the present thesis was to establish novel supramolecular approaches to improve water oxidation catalysis using the catalytically active {Ru(bda)} fragment as key motive (bda = 2,2'-bipyridine-6,6'-dicarboxylate). First, the synthesis of ruthenium catalysts gathering three {Ru(bda)} water oxidation subunits in a macrocyclic fashion is described. By using bridging bipyridine ligands of different lengths, metallosupramolecular macrocycles with distinct sizes have been obtained. Interestingly, an intermediate ring size has been proven to be optimal for the catalytic water oxidation. Detailed kinetic, spectroscopic, and theoretical studies helped to identify the reaction mechanism and to rationalize the different catalytic activities. Furthermore, solubilizing side chains have been introduced for the most active derivative to achieve full water solubility. Secondly, the {Ru(bda)} fragment was embedded into supramolecular aggregates to generate more stable catalytic systems compared to a homogeneous reference complex. Therefore, the catalyst fragment was equipped with axial perylene bisimide (PBI) ligands, which facilitate self-assembly. Moreover, the influence of the different accessible aggregate morphologies on the catalytic performance has been investigated.}, subject = {Ruthenium Komplexe}, language = {en} } @article{KunzLabesWieseetal.2014, author = {Kunz, Anna Lena and Labes, Antje and Wiese, Jutta and Bruhn, Torsten and Bringmann, Gerhard and Imhoff, Johannes F.}, title = {Nature's Lab for Derivatization: New and Revised Structures of a Variety of Streptophenazines Produced by a Sponge-Derived Streptomyces Strain}, series = {Marine Drugs}, volume = {12}, journal = {Marine Drugs}, number = {4}, issn = {1660-3397}, doi = {10.3390/md12041699}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-116816}, pages = {1699-1714}, year = {2014}, abstract = {Eight streptophenazines (A-H) have been identified so far as products of Streptomyces strain HB202, which was isolated from the sponge Halichondria panicea from the Baltic Sea. The variation of bioactivities based on small structural changes initiated further studies on new derivatives. Three new streptophenazines (I-K) were identified after fermentation in the present study. In addition, revised molecular structures of streptophenazines C, D, F and H are proposed. Streptophenazines G and K exhibited moderate antibacterial activity against the facultative pathogenic bacterium Staphylococcus epidermidis and against Bacillus subtilis. All tested compounds (streptophenazines G, I-K) also showed moderate activities against PDE 4B.}, language = {en} } @phdthesis{Kriegisch2005, author = {Kriegisch, Volker}, title = {Electron transfer processes between organic redox centres and electrodes via active bridges in self-assembled monolayers}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-15892}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2005}, abstract = {Cyclovoltammetrische Messungen der Ferrocenalkylthiole 1 - 3 belegen, dass homogene, gemischte Monolagen aus redoxaktiven Verbindungen und redoxinaktiven Alkylthiolen gebildet werden. Die von Creager et al. bestimmten ET Raten der Ferrocenalkylthiole 1 - 3 konnten hierbei verifiziert werden. Wie erwartet erfolgt eine Abnahme der ET Geschwindigkeit bei einer Kettenverl{\"a}ngerung des Alkylspacers von 2 nach 3. Eine unterschiedliche Konnektivit{\"a}t zwischen Redoxzentrum und Alkylspacer, z. B. die Einf{\"u}hrung einer Carbonyl-Funktion im Falle von 1, unter Beibehaltung der Kettenl{\"a}nge zeigt keinen bemerkbaren Einfluß auf den ET. Trotzt vergleichbaren Abstands der aromatischen Ferrocenthiole 4 und 5 zu der C8-Alkyl-Verbindung 2 zwischen Redoxzentrum und Elektrode, weisen diese aufgrund ihrer starken Konjugation sehr hohe ET Geschwindigkeiten auf. Die elektronischen Kopplungsfaktoren selbst deuten auf einen nichtadiabtischen ET zwischen Redoxzentrum und Elektrode hin. Wie erwartet kommt es zu einem Anwachsen der Kopplungsfaktoren bei sich verk{\"u}rzender Kettenl{\"a}nge oder bei Einf{\"u}hrung konjugierter Spacersysteme. Zusammenfassend kann gesagt werden, dass Erfahrungen hinsichtlich der Pr{\"a}paration der Monolagen gesammelt, die gemessenen ET Raten f{\"u}r der literaturbekannten Verbindungen 1 - 3 best{\"a}tigt und diese Informationen auf die konjugierten Verbindungen 4 und 5 angewandt werden konnten. Im zweiten Teil wurden die Triarylamin- (29, 32) und Phenothiazinalkylthiole (35) bez{\"u}glich ihres ET Verhaltens in gemischten Monolagen untersucht. Mittels Cyclovoltammetrie konnte gezeigt werden, daß einheitlich geformte, verd{\"u}nnte Monolagen vorliegen. Die ET Raten der Triarylamin- (29, 32) und Phenithiazinalkylthiole (35) sind jedoch um den Faktor 10 bis 100 h{\"o}her als vergleichbare Ferrocenalkylthiole gleicher Kettenl{\"a}nge [1, 2], wohingegen f{\"u}r Monolagen, welche [Ru(bpy)2(pp)]+-Alkythiole enthalten, {\"a}quivalente Werte gefunden wurden [3]. Die ET Geschwindigkeit wird von zwei Parametern beeinflusst: dem elektronischen Kopplungsmatrixelement und der Regorganisationsenergie \&\#61548;\&\#61472; [4]. Die ET Geschwindigkeit in Donor-substituierten Alkylthiolen wird haupts{\"a}chlich durch \&\#61548; beeinflusst und sogar kleine {\"A}nderungen dieser zeigen eine große Auswirkung auf die zu untersuchenden Prozesse. Aus diesem Grund wird eine Zunahme der ET Geschwindigkeit von Ferrocen (hohe Reorganisationsenergie) {\"u}ber die Phenothiazinverbindung 35 und [Ru(bpy)2(pp)]+ zu den Triarylaminchromophoren 29 und 32 (niedrige Reorganisationsenergie) beobachtet. Weiterhin spielt, im Gegensatz zu Beobachtung von Creager et al. an {\"a}quivalenten Ferrocenverbingungen, die Anbindung des Redoxzentrums an den Alkylspacer eine bedeutende Rolle. Im Falle der elektronenreichen Ether-verbr{\"u}ckten Verbindung 29 wird der ET nicht alleine durch \&\#61548;, sondern ebenso durch mesomere Effekte bestimmt. Bei 29 kommt es durch Lokalisation der positiven Ladung nahe der Ether Funktion formal zu einer Kettenverk{\"u}rzung um eine „Methyleneinheit", welche schließlich in h{\"o}heren ET Geschwindigkeiten resultiert. Im dritten Teil dieser Dissertation wurde ein Serie „molekularer Dr{\"a}hte" bestehend aus Methoxy- oder Chlorid-substituierten Triarylamin- und Phenothiazinverbindungen mit unterschiedlichen Br{\"u}ckeneinheiten und Br{\"u}ckenl{\"a}ngen zwischen Redoxzentrum und Ankerfunktion dargestellt und im Hinblick auf ihr ET Verhalten untersucht. Durch cyclovoltammetrische und UV/Vis-spektroskopische Untersuchungen konnte gezeigt werden, dass sowohl die Oxidationspotentiale als auch die energetischen Zust{\"a}nde der Chromophore recht gut durch Einf{\"u}hrung unterschiedlicher Redoxzentren und Br{\"u}ckeneinheiten beeinflusst werden k{\"o}nnen. Trotz erfolgreicher Kontrolle der Dichte der Chromophoreinheiten in den gemischten Monolagen konnte nur f{\"u}r die Verbindungen 49, 52 und 87 mit Nitril-substituierten Br{\"u}ckeneinheiten verl{\"a}ssliche ET Geschwindigkeiten erhalten werden. Bei diesen Chromphoren ist ein Absinken der ET Geschwindigkeit bei zunehmender Dichte der redoxaktiven Molek{\"u}le in den gemischten Monolagen zu beobachten, welche auf eine {\"A}nderung der Adsorptionsgeometrie hindeutet. Bei zunehmender Packungsdichte der Chromophore f{\"u}hrt dies zu einer aufrechteren Stellung der redoxaktiven Spezies. F{\"u}r alle anderen Verbindungen konnten keine Werte aufgrund der zu schnellen ET Geschwindigkeiten ermittelt werden. Konformelle, wie auch die sehr geringe Abstandsabh{\"a}ngigkeit des ET, resultieren in hohen ET Geschwindigkeiten oder auch ung{\"u}nstige HOMO-LUMO Energien bez{\"u}glich des Donors, der Br{\"u}cke und der Elektrode sind Gr{\"u}nde f{\"u}r dieses Verhalten. Die Tatsache, dass Verbindung 49 und 52 beinahe die gleichen Geschwindigkeitskonstanten des ETs unabh{\"a}ngig von der Anzahl der Br{\"u}ckeneinheiten (n = 2, n = 3) besitzen, deutet darauf hin, dass ein Hopping-Prozess stattfindet, bei welchem eine geringere L{\"a}ngenabh{\"a}ngigkeit des ETs als bei eine Superexchange-Mechanismus zu erwarten ist.}, subject = {Monoschicht}, language = {en} } @article{KrausGrimmSeibel2018, author = {Kraus, Michael and Grimm, Clemens and Seibel, J{\"u}rgen}, title = {Reversibility of a Point Mutation Induced Domain Shift: Expanding the Conformational Space of a Sucrose Phosphorylase}, series = {Scientific Reports}, volume = {8}, journal = {Scientific Reports}, doi = {10.1038/s41598-018-28802-2}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-224845}, year = {2018}, abstract = {Despite their popularity as enzyme engineering targets structural information about Sucrose Phosphorylases remains scarce. We recently clarified that the Q345F variant of Bifidobacterium adolescentis Sucrose Phosphorylase is able to accept large polyphenolic substrates like resveratrol via a domain shift. Here we present a crystal structure of this variant in a conformation suitable for the accommodation of the donor substrate sucrose in excellent agreement with the wild type structure. Remarkably, this conformation does not feature the previously observed domain shift which is therefore reversible and part of a dynamic process rather than a static phenomenon. This crystallographic snapshot completes our understanding of the catalytic cycle of this useful variant and will allow for a more rational design of further generations of Sucrose Phosphorylase variants.}, language = {en} } @phdthesis{Kraus2020, author = {Kraus, Michael}, title = {The Conversion of Bifidobacterium adolescentis Sucrose Phosphorylase into a Polyphenol Transglucosidase via Structure-based Enzyme Engineering}, doi = {10.25972/OPUS-19247}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-192477}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2020}, abstract = {The initial goal was the conversion of Bifidobacterium adolescentis Sucrose Phosphorylase (BaSP) into a polyphenol glucosidase by structure based enzyme engineering. BaSP was chosen because of its ability to utilize sucrose, an economically viable and sustainable donor substrate, and transfer the glucosyl moiety to various acceptor substrates. The introduction of aromatic residues into the active site was considered a viable way to render it more suitable for aromatic acceptor compounds by reducing its polarity and potentially introducing π-π-interactions with the polyphenols. An investigation of the active site revealed Gln345 as a suitable mutagenesis target. As a proof of concept BaSP Q345F was employed in the glycosylation of (+)-catechin, (-)-epicatechin and resveratrol. The variant was selective for the aromatic acceptor substrates and the glucose disaccharide side reaction was only observed after almost quantitative conversion of the aromatic substrates. A crystal structure of BaSP Q345F in complex with glucose was obtained and it displayed an unexpected shift of an entire domain by 3.3 {\AA}. A crystal structure of BaSP D192N-Q345F, an inactive variant in complex with resveratrol-3-α-D-glucosid, the glucosylation product of resveratrol, synthesized by BaSP Q345F was solved. It proved that the domain shift is in fact responsible for the ability of the variant to glycosylate aromatic compounds. Simultaneously a ligand free crystal structure of BaSP Q345F disproved an induced fit effect as the cause of the domain shift. The missing link, a crystal structure of BaSP Q345F in the F-conformation is obtained. This does not feature the domain shift, but is in outstanding agreement with the wildtype structure. The domain shift is therefore not static but rather a step in a dynamic process. It is further conceivable that the domain shifted conformation of BaSP Q345F resembles the open conformation of the wild type and that an adjustment of a conformational equilibrium as a result of the Q345F point mutation is observed. An investigation into the background reaction, the formation of glucose-glucose disaccharides of BaSP Q345F and three further variants that addressed the same region (L341C, D316C-L341C and D316C-N340C) revealed the formation of nigerose by BaSP Q345F.}, subject = {Phosphorylase}, language = {en} } @article{KraftStanglKrauseetal.2017, author = {Kraft, Andreas and Stangl, Johannes and Krause, Ana-Maria and M{\"u}ller-Buschbaum, Klaus and Beuerle, Florian}, title = {Supramolecular frameworks based on [60]fullerene hexakisadducts}, series = {Beilstein Journal of Organic Chemistry}, volume = {13}, journal = {Beilstein Journal of Organic Chemistry}, doi = {10.3762/bjoc.13.1}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-171996}, pages = {1-9}, year = {2017}, abstract = {[60]Fullerene hexakisadducts possessing 12 carboxylic acid side chains form crystalline hydrogen-bonding frameworks in the solid state. Depending on the length of the linker between the reactive sites and the malonate units, the distance of the [60]fullerene nodes and thereby the spacing of the frameworks can be controlled and for the most elongated derivative, continuous channels are obtained within the structure. Stability, structural integrity and porosity of the material were investigated by powder X-ray diffraction, thermogravimetry and sorption measurements.}, language = {en} } @article{KorthMuellerSustmannetal.1987, author = {Korth, H.-G. and M{\"u}ller, W. and Sustmann, R. and Christl, Manfred}, title = {Rearrangement of Free Radicals, XII. ESR Spectroscopic Study of the Ring Opening of the Homobenzvalenyl Radical}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-58376}, year = {1987}, abstract = {Abstraction of an allylic hydrogen atom in homobenzvalene (4) either in solurion by photolyticaßy generated tert-butoxyl radicals or in an adamantane matrix by X-rays produces the homobcnzvalenyl radical (5). which tbennally rearranps · to tbe tropylium ndical (1). In solution tbe activation cnergy for the rate determined step of the reaction sequence was detennined· to be 13.4 ± O.S kcal/mol.}, subject = {Organische Chemie}, language = {en} } @article{KoleKošćakAmaretal.2022, author = {Kole, Goutam Kumar and Košćak, Marta and Amar, Anissa and Majhen, Dragomira and Božinović, Ksenija and Brkljaca, Zlatko and Ferger, Matthias and Michail, Evripidis and Lorenzen, Sabine and Friedrich, Alexandra and Krummenacher, Ivo and Moos, Michael and Braunschweig, Holger and Boucekkine, Abdou and Lambert, Christoph and Halet, Jean-Fran{\c{c}}ois and Piantanida, Ivo and M{\"u}ller-Buschbaum, Klaus and Marder, Todd B.}, title = {Methyl Viologens of Bis-(4'-Pyridylethynyl)Arenes - Structures, Photophysical and Electrochemical Studies, and their Potential Application in Biology}, series = {Chemistry - A European Journal}, volume = {28}, journal = {Chemistry - A European Journal}, number = {40}, doi = {10.1002/chem.202200753}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-287126}, year = {2022}, abstract = {A series of bis-(4'-pyridylethynyl)arenes (arene=benzene, tetrafluorobenzene, and anthracene) were synthesized and their bis-N-methylpyridinium compounds were investigated as a class of π-extended methyl viologens. Their structures were determined by single crystal X-ray diffraction, and their photophysical and electrochemical properties (cyclic voltammetry), as well as their interactions with DNA/RNA were investigated. The dications showed bathochromic shifts in emission compared to the neutral compounds. The neutral compounds showed very small Stokes shifts, which are a little larger for the dications. All of the compounds showed very short fluorescence lifetimes (<4 ns). The neutral compound with an anthracene core has a quantum yield of almost unity. With stronger acceptors, the analogous bis-N-methylpyridinium compound showed a larger two-photon absorption cross-section than its neutral precursor. All of the dicationic compounds interact with DNA/RNA; while the compounds with benzene and tetrafluorobenzene cores bind in the grooves, the one with an anthracene core intercalates as a consequence of its large, condensed aromatic linker moiety, and it aggregates within the polynucleotide when in excess over DNA/RNA. Moreover, all cationic compounds showed highly specific CD spectra upon binding to ds-DNA/RNA, attributed to the rare case of forcing the planar, achiral molecule into a chiral rotamer, and negligible toxicity toward human cell lines at ≤10 μM concentrations. The anthracene-analogue exhibited intracellular accumulation within lysosomes, preventing its interaction with cellular DNA/RNA. However, cytotoxicity was evident at 1 μM concentration upon exposure to light, due to singlet oxygen generation within cells. These multi-faceted features, in combination with its two-photon absorption properties, suggest it to be a promising lead compound for development of novel light-activated theranostic agents.}, language = {en} } @article{KokicHillenTegunovetal.2021, author = {Kokic, Goran and Hillen, Hauke S. and Tegunov, Dimitry and Dienermann, Christian and Seitz, Florian and Schmitzova, Jana and Farnung, Lucas and Siewert, Aaron and H{\"o}bartner, Claudia and Cramer, Patrick}, title = {Mechanism of SARS-CoV-2 polymerase stalling by remdesivir}, series = {Nature Communications}, volume = {12}, journal = {Nature Communications}, doi = {10.1038/s41467-020-20542-0}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-220979}, year = {2021}, abstract = {Remdesivir is the only FDA-approved drug for the treatment of COVID-19 patients. The active form of remdesivir acts as a nucleoside analog and inhibits the RNA-dependent RNA polymerase (RdRp) of coronaviruses including SARS-CoV-2. Remdesivir is incorporated by the RdRp into the growing RNA product and allows for addition of three more nucleotides before RNA synthesis stalls. Here we use synthetic RNA chemistry, biochemistry and cryoelectron microscopy to establish the molecular mechanism of remdesivir-induced RdRp stalling. We show that addition of the fourth nucleotide following remdesivir incorporation into the RNA product is impaired by a barrier to further RNA translocation. This translocation barrier causes retention of the RNA 3ʹ-nucleotide in the substrate-binding site of the RdRp and interferes with entry of the next nucleoside triphosphate, thereby stalling RdRp. In the structure of the remdesivir-stalled state, the 3ʹ-nucleotide of the RNA product is matched and located with the template base in the active center, and this may impair proofreading by the viral 3ʹ-exonuclease. These mechanistic insights should facilitate the quest for improved antivirals that target coronavirus replication.}, language = {en} } @phdthesis{Klein2015, author = {Klein, Johannes Hubert}, title = {Electron Transfer and Spin Chemistry in Iridium-Dipyrrin Dyads and Triads}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-118726}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2015}, abstract = {The successful synthesis of a family of donor-iridium complex-acceptor triads (T1-T6, pMV1 and mMV1) and their electrochemical and photophysical properties were presented in this work. Triarylamines (TAA) were used as donors and naphthalene diimide (NDI) as acceptor. A bis-cyclometalated phenylpyrazole iridium dipyrrin complex acts as a photosensitiser. In addition, a molecular structure of T1 was obtained by single crystal X-ray diffraction. Transient absorption spectroscopy experiments of these triads resembled that upon excitation a photoinduced electron transfer efficiently generates long-lived, charge-separated (CS) states. Thereby, the electron-transfer mechanism depends on the excitation energy. The presence of singlet and triplet CS states was clarified by magnetic-field dependent transient-absorption spectroscopy in the nanosecond time regime. It was demonstrated that the magnetic field effect of charge-recombination kinetics showed for the first time a transition from the coherent to the incoherent spin-flip regime. The lifetime of the CS states could be drastically prolonged by varying the spacer between the iridium complex and the NDI unit by using a biphenyl instead of a phenylene unit in T4. A mixed-valence (MV) state of two TAA donors linked to an iridium metal centre were generated upon photoexcitation of triad pMV1 and mMV1. The mixed-valence character in these triads was proven by the analysis of an intervalence charge-transfer (IV-CT) band in the (near-infrared) NIR spectral region by femtosecond pump-probe experiments. These findings were supported by TD-DFT calculations. The synthesis of dyads (D1-D4) was performed. Thereby the dipyrrin ligand was substituted with electron withdrawing groups. The electrochemical and photophysical characterisation revealed that in one case (D4) it was possible to generate a CS state upon photoexcitation.}, subject = {Elektronentransfer}, language = {en} } @article{KleiberLemusDiazStilleretal.2022, author = {Kleiber, Nicole and Lemus-Diaz, Nicolas and Stiller, Carina and Heinrichs, Marleen and Mong-Quyen Mai, Mandy and Hackert, Philipp and Richter-Dennerlein, Ricarda and H{\"o}bartner, Claudia and Bohnsack, Katherine E. and Bohnsack, Markus T.}, title = {The RNA methyltransferase METTL8 installs m\(^3\)C\(_{32}\) in mitochondrial tRNAs\(^{Thr/Ser(UCN)}\) to optimise tRNA structure and mitochondrial translation}, series = {Nature Communication}, volume = {13}, journal = {Nature Communication}, doi = {10.1038/s41467-021-27905-1}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-254592}, year = {2022}, abstract = {Modified nucleotides in tRNAs are important determinants of folding, structure and function. Here we identify METTL8 as a mitochondrial matrix protein and active RNA methyltransferase responsible for installing m\(^3\)C\(_{32}\) in the human mitochondrial (mt-)tRNA\(^{Thr}\) and mt-tRNA\(^{Ser(UCN)}\). METTL8 crosslinks to the anticodon stem loop (ASL) of many mt-tRNAs in cells, raising the question of how methylation target specificity is achieved. Dissection of mttRNA recognition elements revealed U\(_{34}\)G\(_{35}\) and t\(^6\)A\(_{37}\)/(ms\(^2\))i\(^6\)A\(_{37}\), present concomitantly only in the ASLs of the two substrate mt-tRNAs, as key determinants for METTL8-mediated methylation of C\(_{32}\). Several lines of evidence demonstrate the influence of U\(_{34}\), G\(_{35}\), and the m\(^3\)C\(_{32}\) and t\(^6\)A\(_{37}\)/(ms\(^2\))i\(^6\)A\(_{37}\) modifications in mt-tRNA\(^{Thr/Ser(UCN)}\) on the structure of these mt-tRNAs. Although mt-tRNA\(^{Thr/Ser(UCN)}\) lacking METTL8-mediated m\(^3\)C\(_{32}\) are efficiently aminoacylated and associate with mitochondrial ribosomes, mitochondrial translation is mildly impaired by lack of METTL8. Together these results define the cellular targets of METTL8 and shed new light on the role of m\(^3\)C\(_{32}\) within mt-tRNAs.}, language = {en} } @article{KirchnerSchrammIvanovaetal.2024, author = {Kirchner, Philipp H. and Schramm, Louis and Ivanova, Svetlana and Shoyama, Kazutaka and W{\"u}rthner, Frank and Beuerle, Florian}, title = {A water-stable boronate ester cage}, series = {Journal of the American Chemical Society}, volume = {146}, journal = {Journal of the American Chemical Society}, number = {8}, issn = {0002-7863}, doi = {10.1021/jacs.3c12002}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-361245}, pages = {5305-5315}, year = {2024}, abstract = {The reversible condensation of catechols and boronic acids to boronate esters is a paradigm reaction in dynamic covalent chemistry. However, facile backward hydrolysis is detrimental for stability and has so far prevented applications for boronate-based materials. Here, we introduce cubic boronate ester cages 6 derived from hexahydroxy tribenzotriquinacenes and phenylene diboronic acids with ortho-t-butyl substituents. Due to steric shielding, dynamic exchange at the Lewis acidic boron sites is feasible only under acid or base catalysis but fully prevented at neutral conditions. For the first time, boronate ester cages 6 tolerate substantial amounts of water or alcohols both in solution and solid state. The unprecedented applicability of these materials under ambient and aqueous conditions is showcased by efficient encapsulation and on-demand release of β-carotene dyes and heterogeneous water oxidation catalysis after the encapsulation of ruthenium catalysts.}, language = {en} } @phdthesis{Kirchner2019, author = {Kirchner, Eva}, title = {Discrete Supramolecular Stacks by Self-Assembly and Folding of Bis(merocyanine) Dyes}, doi = {10.25972/OPUS-15941}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-159419}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {The present thesis describes the development of a strategy to create discrete finite-sized supramolecular stacks of merocyanine dyes. Thus, bichromophoric stacks of two identical or different chromophores could be realized by folding of bis(merocyanine) dyes and their optical properties were discussed in terms of exciton theory. Quantum chemical calculations revealed strong exciton coupling between the chromophores within the homo- and hetero-π-stacks and the increase of the J-band of the hetero-dimers with increasing energy difference between the excited states of the chromophores could be attributed not only to the different magnitudes of transition dipole moments of the chromophores but also to the increased localization of the excitation in the respective exciton state. Furthermore, careful selection of the length of the spacer unit that defines the interplanar distance between the tethered chromophores directed the self-assembly of the respective bis(merocyanines) into dimers, trimers and tetramers comprising large, structurally precise π-stacks of four, six or eight merocyanine chromophores. It could be demonstrated that the structure of such large supramolecular architectures can be adequately elucidated by commonly accessible analysis tools, in particular NMR techniques in combination with UV/vis measurements and mass spectrometry. Supported by TDDFT calculations, the absorption spectra of the herein investigated aggregates could be explained and a relationship between the absorption properties and the number of stacking chromophores could be established based on exciton theory.}, subject = {Merocyanine}, language = {en} } @phdthesis{KimbadiLombe2021, author = {Kimbadi Lombe, Blaise}, title = {Novel-Type Dimeric Naphthylisoquinoline Alkaloids from Congolese Ancistrocladus Lianas: Isolation, Structural Elucidation, and Antiprotozoal and Anti-Tumoral Activities}, doi = {10.25972/OPUS-19178}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-191789}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {Herein described is the discovery of three novel types of dimeric naphthylisoquinoline alkaloids, named mbandakamines, cyclombandakamines, and spirombandakamines. They were found in the leaves of a botanically as yet unidentified, potentially new Ancistrocladus species, collected in the rainforest of the Democratic Republic of the Congo (DRC). Mbandakamines showed an exceptional 6′,1′′-coupling, in the peri-position neighboring one of the outer axes, leading to an extremely high steric hindrance at the central axis, and to U-turn-like molecular shape, which - different from all other dimeric NIQs, whose basic structures are all quite linear - brings three of the four bicyclic ring systems in close proximity to each other. This created an unprecedented follow-up chemistry, involving ring closure reactions, leading to two further, structurally even more intriguing subclasses, the cyclo- and the spirombandakamines, displaying eight stereogenic elements (the highest total number ever found in naphthylisoquinoline alkaloids). The metabolites exhibited pronounced antiplasmodial and antitrypanosomal activities. Likewise reported in this doctoral thesis are the isolation and structural elucidation of naphthylisoquinoline alkaloids from two further potentially new Ancistrocladus species from DRC. Some of these metabolites have shown pronounced antiausterity activities against human pancreatic cancer PANC-1 cells.}, subject = {Naphthylisochinolinalkaloide}, language = {en} } @article{KimSchembriBialasetal.2022, author = {Kim, Jin Hong and Schembri, Tim and Bialas, David and Stolte, Matthias and W{\"u}rthner, Frank}, title = {Slip-Stacked J-Aggregate Materials for Organic Solar Cells and Photodetectors}, series = {Advanced Materials}, volume = {34}, journal = {Advanced Materials}, number = {22}, doi = {10.1002/adma.202104678}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-276537}, year = {2022}, abstract = {Dye-dye interactions affect the optical and electronic properties in organic semiconductor films of light harvesting and detecting optoelectronic applications. This review elaborates how to tailor these properties of organic semiconductors for organic solar cells (OSCs) and organic photodiodes (OPDs). While these devices rely on similar materials, the demands for their optical properties are rather different, the former requiring a broad absorption spectrum spanning from the UV over visible up to the near-infrared region and the latter an ultra-narrow absorption spectrum at a specific, targeted wavelength. In order to design organic semiconductors satisfying these demands, fundamental insights on the relationship of optical properties are provided depending on molecular packing arrangement and the resultant electronic coupling thereof. Based on recent advancements in the theoretical understanding of intermolecular interactions between slip-stacked dyes, distinguishing classical J-aggregates with predominant long-range Coulomb coupling from charge transfer (CT)-mediated or -coupled J-aggregates, whose red-shifts are primarily governed by short-range orbital interactions, is suggested. Within this framework, the relationship between aggregate structure and functional properties of representative classes of dye aggregates is analyzed for the most advanced OSCs and wavelength-selective OPDs, providing important insights into the rational design of thin-film optoelectronic materials.}, language = {en} } @article{KimLiessStolteetal.2021, author = {Kim, Jin Hong and Liess, Andreas and Stolte, Matthias and Krause, Ana-Maria and Stepanenko, Vladimir and Zhong, Chuwei and Bialas, David and Spano, Frank and W{\"u}rthner, Frank}, title = {An Efficient Narrowband Near-Infrared at 1040 nm Organic Photodetector Realized by Intermolecular Charge Transfer Mediated Coupling Based on a Squaraine Dye}, series = {Advanced Materials}, volume = {33}, journal = {Advanced Materials}, number = {26}, doi = {10.1002/adma.202100582}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-256374}, year = {2021}, abstract = {A highly sensitive short-wave infrared (SWIR, λ > 1000 nm) organic photodiode (OPD) is described based on a well-organized nanocrystalline bulk-heterojunction (BHJ) active layer composed of a dicyanovinyl-functionalized squaraine dye (SQ-H) donor material in combination with PC\(_{61}\)BM. Through thermal annealing, dipolar SQ-H chromophores self-assemble in a nanoscale structure with intermolecular charge transfer mediated coupling, resulting in a redshifted and narrow absorption band at 1040 nm as well as enhanced charge carrier mobility. The optimized OPD exhibits an external quantum efficiency (EQE) of 12.3\% and a full-width at half-maximum of only 85 nm (815 cm\(^{-1}\)) at 1050 nm under 0 V, which is the first efficient SWIR OPD based on J-type aggregates. Photoplethysmography application for heart-rate monitoring is successfully demonstrated on flexible substrates without applying reverse bias, indicating the potential of OPDs based on short-range coupled dye aggregates for low-power operating wearable applications.}, language = {en} } @article{KimChristlKochl1990, author = {Kim, E. and Christl, Manfred and Kochl, J. K.}, title = {Charge-Transfer Cycloaddition of Homobenzvalene with Tetracyanoethylene}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-58537}, year = {1990}, abstract = {The transient yellow color observed in the cycloaddition of homobenzvalene (HB) with tetracyanoethylene (TCNE) is associated with the charge-transfer complex [HB, TCNE). The deliberate photoexcitation of [HB,TCNE) affords a mixture of charge-transfer cycloadducts (1, 2, and 3) that differs from that obtained in thermal cycloaddition. The relationship of {HB t TCNE•) radical-ion pair (as the critical reactive intermediate in charge-transfer cycloaddition) to the activation process for thermal cycloaddition is discussed.}, subject = {Organische Chemie}, language = {en} } @phdthesis{Kiendl2020, author = {Kiendl, Benjamin}, title = {Application of diamond nanomaterials in catalysis}, doi = {10.25972/OPUS-17941}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-179415}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2020}, abstract = {In this work the catalytic activity of nanodiamond particles with different dopants and surface terminations and of diamond nanomaterials funtionalized with ruthenium-based photocatalysts was investigated, illustrating materials application in photoredox chemistry and the photo(electro)catalytic reduction of CO2. Regarding the application of diamond nanomaterials in photocatalysis, methods to fabricate and characterize several (un)doped nanoparticles with different surface termination were successfully developed. Various photocatalysts, attached to nanodiamond particles via linker systems, were tested in photoredox catalysis and the photo(electro)catalytic reduction of CO2.}, subject = {Fotokatalyse}, language = {en} } @article{KauppSchleyer1992, author = {Kaupp, Martin and Schleyer, Paul von Rague}, title = {Do Low-Coordinated Group 1-3 cations M\(^n\) \(^+\)L\(_m\) (Mn\(^+\) = K\(^+\), Rb\(^+\), Cs\(^+\), Ca\(^{2+}\), Sr\(^{2+}\), Ba\(^{2+}\), Sc\(^{3+}\), Y\(^{3+}\), La\(^{3+}\); L = NH\(_3\), H\(_2\)0, HF; m = 1-3) with a Formal Noble-Gas Electron Configuration Favor Regular or "Abnormal" Shapes?}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-60111}, year = {1992}, abstract = {No abstract available}, subject = {Anorganische Chemie}, language = {en} } @phdthesis{Kaufmann2019, author = {Kaufmann, Christina}, title = {Discrete Supramolecular Architectures of Bay-linked Perylene Bisimide Dimers by Self-Assembly and Folding}, doi = {10.25972/OPUS-17300}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-173005}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {Supramolecular self-assembly of perylene bisimide (PBI) dyes via non-covalent forces gives rise to a high number of different PBI architectures with unique optical and functional properties. As these properties can be drastically influenced by only slightly structural changes of the formed supramolecular ensembles (Chapter 2.1) the controlled self-assembly of PBI dyes became a central point of current research to design innovative materials with a high potential for different applications as for example in the fields of organic electronics or photovoltaics. As PBI dyes show a strong tendency to form infinite aggregated structures (Chapter 2.2) the aim of this thesis was to precisely control their self-assembly to create small, structurally well-defined PBI assemblies in solution. Chapter 2.3 provides an overview on literature known strategies that were established to realize this aim. It could be demonstrated that especially backbone-directed intra- and intermolecular self-assembly of covalently linked Bis-PBI dyes evolved as one of the most used strategies to define the number of stacked PBI chromophores by using careful designed spacer units with regard to their length and flexibility. By using conventional spectroscopic methods like UV/Vis and fluorescence experiments in combination with NMR measurements an in-depth comparison of the molecular and optical properties in solution both in the non-stacked and aggregated state of the target compounds could be elucidated to reveal structure-property relationships of different PBI architectures. Thus, it could be demonstrated, that spacer units that pre-organize two PBI chromophores with an inter-planar distance of r < 7 {\AA} lead to an intramolecular folding, whereas linker moieties with a length between 7 to 11 {\AA} result in an intermolecular self-assembly of the respective Bis-PBIs dyes via dimerization to form well-defined quadruple PBI pi-stacks. Hence, if the used spacer units ensure an inter-planar distance r > 14 {\AA} larger oligomeric PBI pi-stacks are generated. In Chapter 4 a detailed analysis of the exciton coupling in a highly defined H-aggregate quadruple PBI pi-stack is presented. Therefore, bay-tethered PBI dye Bis-PBI 1 was investigated by concentration-dependent UV/Vis spectroscopy in THF and toluene as well as by 2D-DOSY-NMR spectroscopy, ESI mass spectrometry and AFM measurements confirming that Bis-PBI 1 self-assembles exclusively into dimers with four closely pi-stacked PBI chromophores. Furthermore, with the aid of broadband fluorescence upconversion spectroscopy (FLUPS) ensuring broadband detection range and ultrafast time resolution at once, ultrafast Frenkel exciton relaxation and excimer formation dynamics in the PBI quadruple pi-stack within 1 ps was successfully investigated in cooperation with the group of Dongho Kim. Thus, it was possible to gain for the first time insights into the exciton dynamics within a highly defined synthetic dye aggregate beyond dimers. By analysing the vibronic line shape in the early-time transient fluorescence spectra in detail, it could be demonstrated that the Frenkel exciton is entirely delocalized along the quadruple stack after photoexcitation and immediately loses its coherence followed by the formation of the excimer state. In Chapter 5 four well-defined Bis-PBI folda-dimers Bis-PBIs 2-4 were introduced, where linker units of different length (r < 7 {\AA}) and steric demand were used to gain distinct PBI dye assemblies in the folded state. Structural elucidation based on in-depth UV/Vis, CD and fluorescence experiments in combination with 1D and 2D NMR studies reveals a stacking of the two PBI chromophores upon folding, where geometry-optimized structures obtained from DFT calculations suggest only slightly different arrangements of the PBI units enforced by the distinct spacer moieties. With the resulting optical signatures of Bis-PBIs 2-4 ranging from conventional Hj-type to monomer like absorption features, the first experimental proof of a PBI-based "null-aggregate" could be presented, in which long- and short-range exciton coupling fully compensate each other. Hence, the insights of this chapter pinpoint the importance of charge-transfer mediated short-range exciton coupling that can significantly influence the properties of pi-stacked PBI chromophores In the last part of this thesis (Chapter 6), spacer-controlled self-assembly of four bay-linked Bis-PBI dyes Bis-PBIs 5-8 into well-defined supramolecular architectures was investigated, where the final aggregate structures are substantially defined by the nature of the used spacer units. By systematically extending the backbone length from 7 to 15 {\AA} defining the inter-planar distance between the tethered chromophores, different assemblies from defined quadruple PBI pi-stacks to larger oligomeric pi-stacks could be gained upon aggregation. In conclusion, the synthesis of nine covalently linked PBI dyes in combination with a detailed investigation of their spacer-mediated self-assembly behaviour in solution concerning structure-properties-relationships was presented within this thesis. The results confirm a strong exciton coupling in different types of Bis-PBI architectures e.g. folda-dimers or highly defined quadruple pi-stacks, which significantly influences their optical properties upon self-assembly.}, subject = {Supramolekulare Chemie}, language = {en} } @article{KarnaGreinEngelsetal.1990, author = {Karna, S.P. and Grein, F. and Engels, Bernd and Peyerimhoff, S.D.}, title = {Ab initio configuration-interaction studies of the ground state potential energy and hyperfine coupling constants of \(^{35}\)Cl\(_2^-\)}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-58869}, year = {1990}, abstract = {Potential energy and spectroscopic constants for the X\(^2 \sum^+ _\mu\) ground state of a;, were calculated by configuration-interaction (Cl) methods, using large basis sets with polarization and diffuse functions. From these CI wavefunctions, the isotropic (a\(_{iso}\)) and dipolar (A\(_{dip}\)) components of the hyperfine coupling constant were obtained. The effects of various s, p basis sets, polarization and diffuse functions, as well as the influence of reference configurations and configuration selection thresholds were investigated. The best values obtained are 35·31 G for a\(_{iso}\) and 29·440 for A\(_{dip}\)• tobe compared with experimental values of 37 ± 1 G and 32 ± 1 G, respectively. It is shown that the contributions to a1so of the K and L shells are opposite in sign, differing by about 4 G. Upon vibrational averaging, both a\(_{iso}\) and A\(_{dip}\) move towards smaller values as v increases. An adiabatic electron affinity of 2·46eV was obtained for CL\(_2\) , and a vertical electron detachment energy of 3·71 eV for Cl;.}, subject = {Organische Chemie}, language = {en} } @article{KarnaGreinEngelsetal.1989, author = {Karna, S. and Grein, F. and Engels, Bernd and Peyerimhoff, S.D.}, title = {The hyperfine coupling constants of \(^{19}\)F\(_2\)}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-58817}, year = {1989}, abstract = {The isotropic (a\(_{iso}\)) and dipolar (A\(_{dip}\)) hyperfine coupling constants of 19F2 were obtained from MRD-CI wave functions using a variety of basis sets. In series I, increasing numbers of d functions were added to a 5s4p contracted Huzinaga!Dunning basis. In series II, the 5s3p basis set was uncontracted in several steps until 9s5p was reached, to which were added from one to three d-polarization functions. Cl parameters (selectioo threshoids and the number of reference coofiguratioos) were also varied. A study of the R dependence of aiso and Adip was perfonned. The best values obtained at R\(_e\) are 260 G for a\(_{iso}\) and 308 G for A\(_{dip}\)• compared with experimental values of about 280 G for a;10 and 320 G for A\(_{dip}\)·}, subject = {Organische Chemie}, language = {en} } @article{KarakStepanenkoAddicoatetal.2022, author = {Karak, Suvendu and Stepanenko, Vladimir and Addicoat, Matthew A. and Keßler, Philipp and Moser, Simon and Beuerle, Florian and W{\"u}rthner, Frank}, title = {A Covalent Organic Framework for Cooperative Water Oxidation}, series = {Journal of the American Chemical Society}, volume = {144}, journal = {Journal of the American Chemical Society}, number = {38}, issn = {0002-7863}, doi = {10.1021/jacs.2c07282}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-287591}, pages = {17661-17670}, year = {2022}, abstract = {The future of water-derived hydrogen as the "sustainable energy source" straightaway bets on the success of the sluggish oxygen-generating half-reaction. The endeavor to emulate the natural photosystem II for efficient water oxidation has been extended across the spectrum of organic and inorganic combinations. However, the achievement has so far been restricted to homogeneous catalysts rather than their pristine heterogeneous forms. The poor structural understanding and control over the mechanistic pathway often impede the overall development. Herein, we have synthesized a highly crystalline covalent organic framework (COF) for chemical and photochemical water oxidation. The interpenetrated structure assures the catalyst stability, as the catalyst's performance remains unaltered after several cycles. This COF exhibits the highest ever accomplished catalytic activity for such an organometallic crystalline solid-state material where the rate of oxygen evolution is as high as ∼26,000 μmol L\(^{-1}\) s\(^{-1}\) (second-order rate constant k ≈ 1650 μmol L s\(^{-1}\) g\(^{-2}\)). The catalyst also proves its exceptional activity (k ≈ 1600 μmol L s\(^{-1}\) g\(^{-2}\)) during light-driven water oxidation under very dilute conditions. The cooperative interaction between metal centers in the crystalline network offers 20-30-fold superior activity during chemical as well as photocatalytic water oxidation as compared to its amorphous polymeric counterpart.}, language = {en} } @article{KarGehrigAllampallyetal.2016, author = {Kar, Haridas and Gehrig, Dominik W. and Allampally, Naveen Kumar and Fern{\´a}ndez, Gustavo and Laquai, Fr{\´e}d{\´e}ric and Ghosh, Suhrit}, title = {Cooperative supramolecular polymerization of an amine-substituted naphthalene-diimide and its impact on excited state photophysical properties}, series = {Chemical Science}, volume = {7}, journal = {Chemical Science}, number = {2}, doi = {10.1039/c5sc03462k}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-191459}, pages = {1115-1120}, year = {2016}, abstract = {A donor-acceptor-donor (D-A-D) type naphthalene-diimide (NDI-H) chromophore exhibits highly cooperative J-aggregation leading to nanotubular self-assembly and gelation in n-decane, as demonstrated by UV/Vis, FT-IR, photoluminescence and microscopy studies. Analysis of temperature-dependent UV/Vis spectra using the nucleation-elongation model and FT-IR data reveals the molecular origin of the cooperative nature of the self-assembly. The supramolecular polymerization is initiated by H-bonding up to a degree of polymerization similar to 20-25, which in a subsequent elongation step promotes J-aggregation in orthogonal direction leading to possibly a sheet-like structure that eventually produces nanotubes. Time-resolved fluorescence and absorption measurements demonstrate that such a tubular assembly enables very effective delocalization of excited states resulting in a remarkably prolonged excited state lifetime.}, language = {en} } @phdthesis{Kaiser2009, author = {Kaiser, Theo E.}, title = {J-Aggregates of Tetraphenoxy-Substituted Perylene Bisimide Dyes}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-43544}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2009}, abstract = {In dieser Doktorarbeit wurde gezeigt, dass die sehr begehrte J-Aggregation funktionaler Perylenbisimid-Chromophore durch geeignetes Design der monomeren Bausteine erreicht werden kann. Hierzu war einerseits die Selbstanordnung durch ein Zusammenwirken von Wasserstoffbr{\"u}cken und Pi-Pi-Wechselwirkungen zu beg{\"u}nstigen, und andererseits eine Anordnung in kolumnaren Stapeln zu verhindern, was durch Kern-Verdrillung mittels sterisch anspruchsvollen Substituenten gelang. Desweiteren gaben Selbstanordnungsstudien neue Einblicke in den dynamischen Aggregationsprozess niedrigdimensionaler langgestreckter Aggregate mit stark exzitonisch gekoppelten Chromophoren. Die Beziehung zwischen bekannten Cyaninfarbstoffen, wie der von THIATS mit dem vorliegenden PBI 1a wurde durch Absorptions- und Fluoreszenzspektroskopie bei Tieftemperaturen von 5 K bis Raumtemperatur untersucht. Die vormals beispiellosen funktionalen Eigenschaften der PBI-Aggregate, welche aus der J-artigen exzitonischen Kopplung herr{\"u}hren, sind vielversprechend f{\"u}r die Anwendung in optoelektronischen Bauteilen und f{\"u}r die Photovoltaik.}, subject = {Perylenbisdicarboximide