@article{ChenPalmLeschetal.2011, author = {Chen, Y. and Palm, F. and Lesch, K. P. and Gerlach, M. and Moessner, R. and Sommer, C.}, title = {5-hydroxyindolacetic acid (5-HIAA), a main metabolite of serotonin, is responsible for complete Freund's adjuvant-induced thermal hyperalgesia in mice}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-68858}, year = {2011}, abstract = {Background: The role of serotonin (5-hydroxytrptamine, 5-HT) in the modulation of pain has been widely studied. Previous work led to the hypothesis that 5-hydroxyindolacetic acid (5-HIAA), a main metabolite of serotonin, might by itself influence pain thresholds. Results: In the present study, we investigated the role of 5-HIAA in inflammatory pain induced by intraplantar injection of complete Freund's adjuvant (CFA) into the hind paw of mice. Wild-type mice were compared to mice deficient of the 5-HT transporter (5-HTT-/- mice) using behavioral tests for hyperalgesia and high-performance liquid chromatography (HPLC) to determine tissue levels of 5-HIAA. Wild-type mice reproducibly developed thermal hyperalgesia and paw edema for 5 days after CFA injection. 5-HTT-/- mice treated with CFA had reduced thermal hyperalgesia on day 1 after CFA injection and normal responses to heat hereafter. The 5-HIAA levels in spinal cord and sciatic nerve as measured with HPLC were lower in 5-HTT-/- mice than in wild-type mice after CFA injection. Pretreatment of wild-type mice with intraperitoneal injection of para-chlorophenylalanine (p-CPA), a serotonin synthesis inhibitor, resulted in depletion of the 5-HIAA content in spinal cord and sciatic nerve and decrease in thermal hyperalgesia in CFA injected mice. The application of exogenous 5-HIAA resulted in potentiation of thermal hyperalgesia induced by CFA in 5-HTT-/- mice and in wild-type mice pretreated with p- CPA, but not in wild-type mice without p-CPA pretreatment. Further, methysergide, a broad-spectrum serotonin receptor antagonist, had no effect on 5-HIAA-induced potentiation of thermal hyperalgesia in CFA-treated wildtype mice. Conclusion: Taken together, the present results suggest that 5-HIAA plays an important role in modulating peripheral thermal hyperalgesia in CFA induced inflammation, probably via a non-serotonin receptor mechanism.}, subject = {Medizin}, language = {en} } @article{EulalioFroehlichManoetal.2011, author = {Eulalio, Ana and Fr{\"o}hlich, Kathrin S. and Mano, Miguel and Giacca, Mauro and Vogel, J{\"o}rg}, title = {A Candidate Approach Implicates the Secreted Salmonella Effector Protein SpvB in P-Body Disassembly}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-68928}, year = {2011}, abstract = {P-bodies are dynamic aggregates of RNA and proteins involved in several post-transcriptional regulation processes. Pbodies have been shown to play important roles in regulating viral infection, whereas their interplay with bacterial pathogens, specifically intracellular bacteria that extensively manipulate host cell pathways, remains unknown. Here, we report that Salmonella infection induces P-body disassembly in a cell type-specific manner, and independently of previously characterized pathways such as inhibition of host cell RNA synthesis or microRNA-mediated gene silencing. We show that the Salmonella-induced P-body disassembly depends on the activation of the SPI-2 encoded type 3 secretion system, and that the secreted effector protein SpvB plays a major role in this process. P-body disruption is also induced by the related pathogen, Shigella flexneri, arguing that this might be a new mechanism by which intracellular bacterial pathogens subvert host cell function.}, subject = {Salmonella}, language = {en} } @article{NiewaldaVoellerEschbachetal.2011, author = {Niewalda, Thomas and V{\"o}ller, Thomas and Eschbach, Claire and Ehmer, Julia and Wen-Chuang, Chou and Timme, Marc and Fiala, Andr{\´e} and Gerber, Bertram}, title = {A Combined Perceptual, Physico-Chemical, and Imaging Approach to 'Odour-Distances' Suggests a Categorizing Function of the Drosophila Antennal Lobe}, series = {PLoS One}, volume = {6}, journal = {PLoS One}, number = {9}, doi = {10.1371/journal.pone.0024300}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-133510}, pages = {e24300}, year = {2011}, abstract = {How do physico-chemical stimulus features, perception, and physiology relate? Given the multi-layered and parallel architecture of brains, the question specifically is where physiological activity patterns correspond to stimulus features and/or perception. Perceived distances between six odour pairs are defined behaviourally from four independent odour recognition tasks. We find that, in register with the physico-chemical distances of these odours, perceived distances for 3octanol and n-amylacetate are consistently smallest in all four tasks, while the other five odour pairs are about equally distinct. Optical imaging in the antennal lobe, using a calcium sensor transgenically expressed in only first-order sensory or only second-order olfactory projection neurons, reveals that 3-octanol and n-amylacetate are distinctly represented in sensory neurons, but appear merged in projection neurons. These results may suggest that within-antennal lobe processing funnels sensory signals into behaviourally meaningful categories, in register with the physico-chemical relatedness of the odours.}, language = {en} } @article{NiewaldaVoellerEschbachetal.2011, author = {Niewalda, Thomas and V{\"o}ller, Thomas and Eschbach, Claire and Ehmer, Julia and Chou, Wen-Chuang and Timme, Marc and Fiala, Andr{\´e} and Gerber, Bertram}, title = {A Combined Perceptual, Physico-Chemical, and ImagingApproach to 'Odour-Distances' Suggests a CategorizingFunction of the Drosophila Antennal Lobe}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-74769}, year = {2011}, abstract = {How do physico-chemical stimulus features, perception, and physiology relate? Given the multi-layered and parallel architecture of brains, the question specifically is where physiological activity patterns correspond to stimulus features and/ or perception. Perceived distances between six odour pairs are defined behaviourally from four independent odour recognition tasks. We find that, in register with the physico-chemical distances of these odours, perceived distances for 3-octanol and n-amylacetate are consistently smallest in all four tasks, while the other five odour pairs are about equally distinct. Optical imaging in the antennal lobe, using a calcium sensor transgenically expressed in only first-order sensory or only second-order olfactory projection neurons, reveals that 3-octanol and n-amylacetate are distinctly represented in sensory neurons, but appear merged in projection neurons. These results may suggest that within-antennal lobe processing funnels sensory signals into behaviourally meaningful categories, in register with the physico-chemical relatedness of the odours.}, subject = {Drosophila Antennal Lobe}, language = {en} } @phdthesis{Rueth2011, author = {R{\"u}th, Michael}, title = {A Comprehensive Study of Dilute Magnetic Semiconductor Resonant Tunneling Diodes}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-71472}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2011}, abstract = {We investigate transport measurements on all II-VI semiconductor resonant tunneling diodes (RTDs). Being very versatile, the dilute magnetic semiconductor (DMS) system (Zn,Be,Mn,Cd)Se is a perfect testbed for various spintronic device designs, as it allows for separate control of electrical and magnetic properties. In contrast to the ferromagnetic semiconductor (Ga,Mn)As, doping ZnSe with Mn impurities does not alter the electrical properties of the semiconductor, as the magnetic dopant is isoelectric in the ZnSe host.}, subject = {Semimagnetischer Halbleiter}, language = {en} } @article{KistlerSiwyFranketal.2011, author = {Kistler, Andreas D. and Siwy, Justyna and Frank, Breunig and Jeevaratnam, Praveen and Scherl, Alexander and Mullen, William and Warnock, David G. and Wanner, Christoph and Hughes, Derralynn A. and Mischak, Harald and W{\"u}thrich, Rudolf P. and Serra, Andreas L.}, title = {A Distinct Urinary Biomarker Pattern Characteristic of Female Fabry Patients That Mirrors Response to Enzyme Replacement Therapy}, series = {PLoS ONE}, volume = {6}, journal = {PLoS ONE}, number = {6}, doi = {10.1371/journal.pone.0020534}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-133526}, pages = {e20534}, year = {2011}, abstract = {Female patients affected by Fabry disease, an X-linked lysosomal storage disorder, exhibit a wide spectrum of symptoms, which renders diagnosis, and treatment decisions challenging. No diagnostic test, other than sequencing of the alpha-galactosidase A gene, is available and no biomarker has been proven useful to screen for the disease, predict disease course and monitor response to enzyme replacement therapy. Here, we used urine proteomic analysis based on capillary electrophoresis coupled to mass spectrometry and identified a biomarker profile in adult female Fabry patients. Urine samples were taken from 35 treatment-naive female Fabry patients and were compared to 89 age-matched healthy controls. We found a diagnostic biomarker pattern that exhibited 88.2\% sensitivity and 97.8\% specificity when tested in an independent validation cohort consisting of 17 treatment-naive Fabry patients and 45 controls. The model remained highly specific when applied to additional control patients with a variety of other renal, metabolic and cardiovascular diseases. Several of the 64 identified diagnostic biomarkers showed correlations with measures of disease severity. Notably, most biomarkers responded to enzyme replacement therapy, and 8 of 11 treated patients scored negative for Fabry disease in the diagnostic model. In conclusion, we defined a urinary biomarker model that seems to be of diagnostic use for Fabry disease in female patients and may be used to monitor response to enzyme replacement therapy.}, language = {en} } @book{FalkMarohnMicheletal.2011, author = {Falk, Michael and Marohn, Frank and Michel, Ren{\´e} and Hofmann, Daniel and Macke, Maria and Tewes, Bernward and Dinges, Peter and Spachmann, Christoph and Englert, Stefan}, title = {A First Course on Time Series Analysis : Examples with SAS}, organization = {Universit{\"a}t W{\"u}rzburg / Lehrstuhl f{\"u}r Statistik}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-56489}, publisher = {Universit{\"a}t W{\"u}rzburg}, year = {2011}, abstract = {The analysis of real data by means of statistical methods with the aid of a software package common in industry and administration usually is not an integral part of mathematics studies, but it will certainly be part of a future professional work. The present book links up elements from time series analysis with a selection of statistical procedures used in general practice including the statistical software package SAS. Consequently this book addresses students of statistics as well as students of other branches such as economics, demography and engineering, where lectures on statistics belong to their academic training. But it is also intended for the practician who, beyond the use of statistical tools, is interested in their mathematical background. Numerous problems illustrate the applicability of the presented statistical procedures, where SAS gives the solutions. The programs used are explicitly listed and explained. No previous experience is expected neither in SAS nor in a special computer system so that a short training period is guaranteed. This book is meant for a two semester course (lecture, seminar or practical training) where the first three chapters can be dealt within the first semester. They provide the principal components of the analysis of a time series in the time domain. Chapters 4, 5 and 6 deal with its analysis in the frequency domain and can be worked through in the second term. In order to understand the mathematical background some terms are useful such as convergence in distribution, stochastic convergence, maximum likelihood estimator as well as a basic knowledge of the test theory, so that work on the book can start after an introductory lecture on stochastics. Each chapter includes exercises. An exhaustive treatment is recommended. Chapter 7 (case study) deals with a practical case and demonstrates the presented methods. It is possible to use this chapter independent in a seminar or practical training course, if the concepts of time series analysis are already well understood. This book is consecutively subdivided in a statistical part and an SAS-specific part. For better clearness the SAS-specific parts are highlighted. This book is an open source project under the GNU Free Documentation License.}, subject = {Zeitreihenanalyse}, language = {en} } @unpublished{Nassourou2011, author = {Nassourou, Mohamadou}, title = {A Knowledge-based Hybrid Statistical Classifier for Reconstructing the Chronology of the Quran}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-54712}, year = {2011}, abstract = {Computationally categorizing Quran's chapters has been mainly confined to the determination of chapters' revelation places. However this broad classification is not sufficient to effectively and thoroughly understand and interpret the Quran. The chronology of revelation would not only improve comprehending the philosophy of Islam, but also the easiness of implementing and memorizing its laws and recommendations. This paper attempts estimating possible chapters' dates of revelation through their lexical frequency profiles. A hybrid statistical classifier consisting of stemming and clustering algorithms for comparing lexical frequency profiles of chapters, and deriving dates of revelation has been developed. The classifier is trained using some chapters with known dates of revelation. Then it classifies chapters with uncertain dates of revelation by computing their proximity to the training ones. The results reported here indicate that the proposed methodology yields usable results in estimating dates of revelation of the Quran's chapters based on their lexical contents.}, subject = {Text Mining}, language = {en} } @phdthesis{Mark2011, author = {Mark, Stefan}, title = {A Magnetic Semiconductor based Non-Volatile Memory and Logic Element}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-71223}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2011}, abstract = {For the realization of a programmable logic device, or indeed any nanoscale device, we need a reliable method to probe the magnetization direction of local domains. For this purpose we extend investigations on the previously discovered tunneling anisotropic magneto resistance effect (TAMR) by scaling the pillar size from 100 µm down to 260 nm. We start in chapter 4 with a theoretical description of the TAMR effect and show experimental data of miniaturized pillars in chapter 5. With such small TAMR probes we are able to locally sense the magnetization on the 100 nm scale. Sub-micron TAMR and anisotropic magneto resistance (AMR) measurements of sub-millimeter areas show that the behavior of macroscopic (Ga,Mn)As regions is not that of a true macrospin, but rather an ensemble average of the behavior of many nearly identical macrospins. This shows that the magnetic anisotropies of the local regions are consistent with the behavior extracted from macroscopic characterization. A fully electrically controllable read-write memory device out the ferromagnetic semiconductor (Ga,Mn)As is presented in chapter 6. The structure consists of four nanobars which are connected to a circular center region. The first part of the chapter describes the lithography realization of the device. We make use of the sub-micron TAMR probes to read-out the magnetization state of a 650 nm central disk. Four 200 nm wide nanobars are connected to the central disk and serve as source and drain of a spin-polarized current. With the spin-polarized current we are able to switch the magnetization of the central disk by means of current induced switching. Injecting polarized holes with a spin angular momentum into a magnetic region changes the magnetization direction of the region due to the p-d exchange interaction between localized Mn spins and itinerant holes. The magnetization of the central disk can be controlled fully electrically and it can serve as one bit memory element as part of a logic device. In chapter 7 we discuss the domain wall resistance in (Ga,Mn)As. At the transition from nanobars to central disk we are able to generate 90° and 180° domain walls and measure their resistance. The results presented from chapter 5 to 7 combined with the preexisting ultracompact (Ga,Mn)As-based memory cell of ref. [Papp 07c] are the building blocks needed to realize a fully functioning programmable logic device. The work of ref. [Papp 07c] makes use of lithographically engineered strain relaxation to produce a structure comprised of two nanobars with mutually orthogonal uniaxial easy axes, connected by a narrow constriction. Measurements showed that the resistance of the constriction depends on the relative orientation of the magnetization in the two bars. The programmable logic device consists of two central disks connected by a small constriction. The magnetization of the two central disks are used as the input bits and the constriction serves as the output during the logic operation. The concept is introduced in the end of chapter 6 and as an example for a logic operation an XOR gate is presented. The functionality of the programmable logic scheme presented here can be straightforwardly extended to produce multipurpose functional elements, where the given geometry can be used as various different computational elements depending on the number of input bits and the chosen electrical addressing. The realization of such a programmable logic device is shown in chapter 8, where we see that the constriction indeed can serve as a output of the logic operation because its resistance is dependent on the relative magnetization state of both disks. Contrary to ref. [Papp 07c], where the individual magnetic elements connected to the constriction only have two non-volatile magnetic states, each disk in our scheme connected to the constriction has four non-volatile magnetic states. Switching the magnetization of a central disk with an electrical current does not only change the TAMR read-out of the respective disk, it also changes the resistance of the constriction. The resistance polar plot of the constriction maps the relative magnetization states of the individual disks. The presented device design serves as an all-electrical, all-semiconductor logic element. It combines a memory cell and data processing in a single monolithic paradigm.}, subject = {Magnetischer Halbleiter}, language = {en} } @article{Lin2011, author = {Lin, Hang}, title = {A Mixed Bag of Results: Village Elections in Contemporary China}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-68684}, year = {2011}, abstract = {While there is only little transformation to the absolute power of the party-state to be detected, some grassroots democratic experiments, however, are receiving enormous attention of the world, especially village elections. Nevertheless, this preliminary exercise of democracy is widely characterized as a mixed bag of results. Since its first conduction, it has experienced immense development and bought great impact not only on different rural political institutions, but also on common mass villagers, as well as changes to the local governance. But at the same time, the limitations of the factual effectiveness of these elections can hardly be underestimated and such aspects as the standardization of electoral procedures are still to be further improved. Moreover, given the wide variations across Chinese countryside and the strong oppositions from all levels, the future of China's village elections remain hard to gauge.}, subject = {China}, language = {en} } @article{SommerRichterRogauschetal.2011, author = {Sommer, Claudia and Richter, Helmut and Rogausch, Jan P. and Frettloh, Jule and Lungenhausen, Margitta and Maier, Christoph}, title = {A modified score to identify and discriminate neuropathic pain: a study on the German version of the neuropathic pain symptom inventory (NPSI)}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-68716}, year = {2011}, abstract = {Background: Neuropathic pain must be correctly diagnosed for optimal treatment. The questionnaire named Neuropathic Pain Symptom Inventory (NPSI) was developed in its original French version to evaluate the different symptoms of neuropathic pain. We hypothesized that the NPSI might also be used to differentiate neuropathic from non-neuropathic pain. Methods: We translated the NPSI into German using a standard forward-backward translation and administered it in a case-control design to patients with neuropathic (n = 68) and non-neuropathic pain (headache and osteoarthritis, n = 169) to validate it and to analyze its discriminant properties, its sensitivity to change, and to detect neuropathic pain subgroups with distinct profiles. Results: Using a sum score (the NPSI-G score), we found sensitivity to change (r between 0.37 and 0.5 for pain items of the graded chronic pain scale) and could distinguish between neuropathic and other pain on a group basis, but not for individual patients. Post hoc development of a discriminant score with optimized diagnostic properties to distinguish neuropathic pain from non-neuropathic pain resulted in an instrument with high sensitivity (91\%) and acceptable specificity (70\%). We detected six different pain profiles in the patient group with neuropathic pain; three profiles were found to be distinct. Conclusions: The NPSI-G potentially combines the properties of a diagnostic tool and an instrument to identify subtypes of neuropathic pain.}, subject = {Neuralgie}, language = {en} } @article{SchrammFrauneNaumannetal.2011, author = {Schramm, Sabine and Fraune, Johanna and Naumann, Ronald and Hernandez-Hernandez, Abrahan and H{\"o}{\"o}g, Christer and Cooke, Howard J. and Alsheimer, Manfred and Benavente, Ricardo}, title = {A Novel Mouse Synaptonemal Complex Protein Is Essential for Loading of Central Element Proteins, Recombination, and Fertility}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-68895}, year = {2011}, abstract = {The synaptonemal complex (SC) is a proteinaceous, meiosis-specific structure that is highly conserved in evolution. During meiosis, the SC mediates synapsis of homologous chromosomes. It is essential for proper recombination and segregation of homologous chromosomes, and therefore for genome haploidization. Mutations in human SC genes can cause infertility. In order to gain a better understanding of the process of SC assembly in a model system that would be relevant for humans, we are investigating meiosis in mice. Here, we report on a newly identified component of the murine SC, which we named SYCE3. SYCE3 is strongly conserved among mammals and localizes to the central element (CE) of the SC. By generating a Syce3 knockout mouse, we found that SYCE3 is required for fertility in both sexes. Loss of SYCE3 blocks synapsis initiation and results in meiotic arrest. In the absence of SYCE3, initiation of meiotic recombination appears to be normal, but its progression is severely impaired resulting in complete absence of MLH1 foci, which are presumed markers of crossovers in wild-type meiocytes. In the process of SC assembly, SYCE3 is required downstream of transverse filament protein SYCP1, but upstream of the other previously described CE-specific proteins. We conclude that SYCE3 enables chromosome loading of the other CE-specific proteins, which in turn would promote synapsis between homologous chromosomes.}, subject = {Maus}, language = {en} } @unpublished{Nassourou2011, author = {Nassourou, Mohamadou}, title = {A Rule-based Statistical Classifier for Determining a Base Text and Ranking Witnesses In Textual Documents Collation Process}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-57465}, year = {2011}, abstract = {Given a collection of diverging documents about some lost original text, any person interested in the text would try reconstructing it from the diverging documents. Whether it is eclecticism, stemmatics, or copy-text, one is expected to explicitly or indirectly select one of the documents as a starting point or as a base text, which could be emended through comparison with remaining documents, so that a text that could be designated as the original document is generated. Unfortunately the process of giving priority to one of the documents also known as witnesses is a subjective approach. In fact even Cladistics, which could be considered as a computer-based approach of implementing stemmatics, does not present or recommend users to select a certain witness as a starting point for the process of reconstructing the original document. In this study, a computational method using a rule-based Bayesian classifier is used, to assist text scholars in their attempts of reconstructing a non-existing document from some available witnesses. The method developed in this study consists of selecting a base text successively and collating it with remaining documents. Each completed collation cycle stores the selected base text and its closest witness, along with a weighted score of their similarities and differences. At the end of the collation process, a witness selected more often by majority of base texts is considered as the probable base text of the collection. Witnesses' scores are weighted using a weighting system, based on effects of types of textual modifications on the process of reconstructing original documents. Users have the possibility to select between baseless and base text collation. If a base text is selected, the task is reduced to ranking the witnesses with respect to the base text, otherwise a base text as well as ranking of the witnesses with respect to the base text are computed and displayed on a histogram.}, subject = {Textvergleich}, language = {en} } @article{KatjaLopezTillichetal.2011, author = {Katja, Schulze and L{\´o}pez, Diana A. and Tillich, Ulrich M. and Frohme, Marcus}, title = {A simple viability analysis for unicellular cyanobacteria using a new autofluorescence assay, automated microscopy, and ImageJ}, series = {BMC Biotechnology}, volume = {11}, journal = {BMC Biotechnology}, number = {118}, doi = {10.1186/1472-6750-11-118}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-137735}, year = {2011}, abstract = {Background Currently established methods to identify viable and non-viable cells of cyanobacteria are either time-consuming (eg. plating) or preparation-intensive (eg. fluorescent staining). In this paper we present a new and fast viability assay for unicellular cyanobacteria, which uses red chlorophyll fluorescence and an unspecific green autofluorescence for the differentiation of viable and non-viable cells without the need of sample preparation. Results The viability assay for unicellular cyanobacteria using red and green autofluorescence was established and validated for the model organism Synechocystis sp. PCC 6803. Both autofluorescence signals could be observed simultaneously allowing a direct classification of viable and non-viable cells. The results were confirmed by plating/colony count, absorption spectra and chlorophyll measurements. The use of an automated fluorescence microscope and a novel ImageJ based image analysis plugin allow a semi-automated analysis. Conclusions The new method simplifies the process of viability analysis and allows a quick and accurate analysis. Furthermore results indicate that a combination of the new assay with absorption spectra or chlorophyll concentration measurements allows the estimation of the vitality of cells.}, language = {en} } @article{EckhardtAndersMuranyietal.2011, author = {Eckhardt, Manon and Anders, Maria and Muranyi, Walter and Heilemann, Mike and Krijnse-Locker, Jacomine and M{\"u}ller, Barbara}, title = {A SNAP-Tagged Derivative of HIV-1-A Versatile Tool to Study Virus-Cell Interactions}, series = {PLoS ONE}, volume = {6}, journal = {PLoS ONE}, number = {7}, doi = {10.1371/journal.pone.0022007}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-133534}, pages = {e22007}, year = {2011}, abstract = {Fluorescently labeled human immunodeficiency virus (HIV) derivatives, combined with the use of advanced fluorescence microscopy techniques, allow the direct visualization of dynamic events and individual steps in the viral life cycle. HIV proteins tagged with fluorescent proteins (FPs) have been successfully used for live-cell imaging analyses of HIV-cell interactions. However, FPs display limitations with respect to their physicochemical properties, and their maturation kinetics. Furthermore, several independent FP-tagged constructs have to be cloned and characterized in order to obtain spectral variations suitable for multi-color imaging setups. In contrast, the so-called SNAP-tag represents a genetically encoded non-fluorescent tag which mediates specific covalent coupling to fluorescent substrate molecules in a self-labeling reaction. Fusion of the SNAP-tag to the protein of interest allows specific labeling of the fusion protein with a variety of synthetic dyes, thereby offering enhanced flexibility for fluorescence imaging approaches. Here we describe the construction and characterization of the HIV derivative HIV(SNAP), which carries the SNAP-tag as an additional domain within the viral structural polyprotein Gag. Introduction of the tag close to the C-terminus of the matrix domain of Gag did not interfere with particle assembly, release or proteolytic virus maturation. The modified virions were infectious and could be propagated in tissue culture, albeit with reduced replication capacity. Insertion of the SNAP domain within Gag allowed specific staining of the viral polyprotein in the context of virus producing cells using a SNAP reactive dye as well as the visualization of individual virions and viral budding sites by stochastic optical reconstruction microscopy. Thus, HIV(SNAP) represents a versatile tool which expands the possibilities for the analysis of HIV-cell interactions using live cell imaging and sub-diffraction fluorescence microscopy.}, language = {en} } @article{FischerMaierSiegemundetal.2011, author = {Fischer, Roman and Maier, Olaf and Siegemund, Martin and Wajant, Harald and Scheurich, Peter and Pfizenmaier, Klaus}, title = {A TNF Receptor 2 Selective Agonist Rescues Human Neurons from Oxidative Stress-Induced Cell Death}, series = {PLoS ONE}, volume = {6}, journal = {PLoS ONE}, number = {11}, doi = {10.1371/journal.pone.0027621}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-133552}, pages = {e27621}, year = {2011}, abstract = {Tumor necrosis factor (TNF) plays a dual role in neurodegenerative diseases. Whereas TNF receptor (TNFR) 1 is predominantly associated with neurodegeneration, TNFR2 is involved in tissue regeneration and neuroprotection. Accordingly, the availability of TNFR2-selective agonists could allow the development of new therapeutic treatments of neurodegenerative diseases. We constructed a soluble, human TNFR2 agonist (TNC-scTNF(R2)) by genetic fusion of the trimerization domain of tenascin C to a TNFR2-selective single-chain TNF molecule, which is comprised of three TNF domains connected by short peptide linkers. TNC-scTNFR2 specifically activated TNFR2 and possessed membrane-TNF mimetic activity, resulting in TNFR2 signaling complex formation and activation of downstream signaling pathways. Protection from neurodegeneration was assessed using the human dopaminergic neuronal cell line LUHMES. First we show that TNC-scTNF(R2) interfered with cell death pathways subsequent to H(2)O(2) exposure. Protection from cell death was dependent on TNFR2 activation of the PI3K-PKB/Akt pathway, evident from restoration of H(2)O(2) sensitivity in the presence of PI3K inhibitor LY294002. Second, in an in vitro model of Parkinson disease, TNC-scTNFR(2) rescues neurons after induction of cell death by 6-OHDA. Since TNFR2 is not only promoting anti-apoptotic responses but also plays an important role in tissue regeneration, activation of TNFR2 signaling by TNC-scTNF(R2) appears a promising strategy to ameliorate neurodegenerative processes.}, language = {en} } @article{RieberGrafHartletal.2011, author = {Rieber, Nikolaus and Graf, Anna and Hartl, Dominik and Urschel, Simon and Belohradsky, Bernd H. and Liese, Johannes}, title = {Acellular Pertussis Booster in Adolescents Induces Th1 and Memory CD8+ T Cell Immune Response}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-68960}, year = {2011}, abstract = {In a number of countries, whole cell pertussis vaccines (wcP) were replaced by acellular vaccines (aP) due to an improved reactogenicity profile. Pertussis immunization leads to specific antibody production with the help of CD4+ T cells. In earlier studies in infants and young children, wcP vaccines selectively induced a Th1 dominated immune response, whereas aP vaccines led to a Th2 biased response. To obtain data on Th1 or Th2 dominance of the immune response in adolescents receiving an aP booster immunization after a wcP or aP primary immunization, we analyzed the concentration of Th1 (IL-2, TNF-a, INF-c) and Th2 (IL-4, IL-5, IL-10) cytokines in supernatants of lymphocyte cultures specifically stimulated with pertussis antigens. We also investigated the presence of cytotoxic T cell responses against the facultative intracellular bacterium Bordetella pertussis by quantifying pertussis-specific CD8+ T cell activation following the aP booster immunization. Here we show that the adolescent aP booster vaccination predominantly leads to a Th1 immune response based on IFNgamma secretion upon stimulation with pertussis antigen, irrespective of a prior whole cell or acellular primary vaccination. The vaccination also induces an increase in peripheral CD8+CD69+ activated pertussis-specific memory T cells four weeks after vaccination. The Th1 bias of this immune response could play a role for the decreased local reactogenicity of this adolescent aP booster immunization when compared to the preceding childhood acellular pertussis booster. Pertussis-specific CD8+ memory T cells may contribute to protection against clinical pertussis.}, subject = {Jugend}, language = {en} } @article{RudertHolzapfelJakubietz2011, author = {Rudert, Maximilian and Holzapfel, Boris Michael and Jakubietz, Michael}, title = {Adjuvant Radiotherapy}, series = {Deutsches {\"A}rzteblatt International}, volume = {108}, journal = {Deutsches {\"A}rzteblatt International}, number = {33}, doi = {10.3238/arztebl.2011.0553a}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-133571}, pages = {553}, year = {2011}, abstract = {No abstract available.}, language = {en} } @article{SongXiuHuangetal.2011, author = {Song, Ning-Ning and Xiu, Jian-Bo and Huang, Ying and Chen, Jia-Yin and Zhang, Lei and Gutknecht, Lise and Lesch, Klaus Peter and Li, He and Ding, Yu-Qiang}, title = {Adult Raphe-Specific Deletion of Lmx1b Leads to Central Serotonin Deficiency}, series = {PLoS ONE}, volume = {6}, journal = {PLoS ONE}, number = {1}, doi = {10.1371/journal.pone.0015998}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-133581}, pages = {e15998}, year = {2011}, abstract = {The transcription factor Lmx1b is essential for the differentiation and survival of central serotonergic (5-HTergic) neurons during embryonic development. However, the role of Lmx1b in adult 5-HTergic neurons is unknown. We used an inducible Cre-LoxP system to selectively inactivate Lmx1b expression in the raphe nuclei of adult mice. Pet1-CreER(T2) mice were generated and crossed with Lmx1b(flox/flox) mice to obtain Pet1-CreER(T2); Lmx1b(flox/flox) mice (which termed as Lmx1b iCKO). After administration of tamoxifen, the level of 5-HT in the brain of Lmx1b iCKO mice was reduced to 60\% of that in control mice, and the expression of tryptophan hydroxylase 2 (Tph2), serotonin transporter (Sert) and vesicular monoamine transporter 2 (Vmat2) was greatly down-regulated. On the other hand, the expression of dopamine and norepinephrine as well as aromatic L-amino acid decarboxylase (Aadc) and Pet1 was unchanged. Our results reveal that Lmx1b is required for the biosynthesis of 5-HT in adult mouse brain, and it may be involved in maintaining normal functions of central 5-HTergic neurons by regulating the expression of Tph2, Sert and Vmat2.}, language = {en} } @phdthesis{Schnabel2011, author = {Schnabel, Eva}, title = {Alcohol and driving-related performance - A comprehensive meta-analysis focusing the significance of the non-significant}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-69959}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2011}, abstract = {The present work reviews the experimental literature on the acute effects of alcohol on human behaviour related to driving performance. A meta-analysis was conducted which includes studies published between 1954 and 2007 in order to provide a comprehensive knowledge of the substance alcohol. 450 studies reporting 5,300 findings were selected from over 12,000 references after applying certain in- and exclusion criteria. Thus, the present meta-analysis comprises far more studies than reviews on alcohol up to now. In the selected studies, different performance tests were conducted which were relevant for driving. The classification system used in this work assigns these tests to eight categories. The main categories consist of several sub categories classifying the tasks more precisely. The main categories were: (1) visual functions, (2) attention (including vigilance), (3) divided attention, (4) en-/decoding (including information processing and memory), (5) reaction time (including simple reaction time and choice reaction time), (6) psychomotor skills, (7) tracking and (8) driving. In addition to the performance aspect, the classification system takes into account mood and social behaviour variables related to driving safety like tiredness or aggression. Following the evaluation method of vote-counting, the number of significant findings and the number of non-significant findings were summarised per blood alcohol concentration (BAC) group. Thereby, a quantitative estimation of the effects of alcohol depending on the BAC was established, the so-called impairment function, which shows the percentage of significantly impaired findings. In order to provide a general overview of alcohol effects on driving-related performance, a global impairment function was established by aggregating all performance findings. The function is nearly linear with about 30\% significant findings at a BAC of 0.05\% and 50\% significant findings at a BAC of 0.08\%. In addition, more specific impairment functions considering only the findings of the single behavioural categories were calculated. The results revealed that impairment depends not only on the BAC, but also clearly differs between most of the performance categories. Tracking and driving performance were most affected by alcohol with impairment beginning at very low BACs of 0.02\%. Also psychomotor skills were considerably affected by rather low BACs. Impairment of visual functions and information processing occurred at BACs of 0.04\% and increased substantially with higher BACs. Impairment in memory tests could be found with very low BACs of 0.02\%, but varied depending on the kind of memory. Performance decrements in divided attention tests could also be found with very low BACs in some studies. Attention started to be impaired at 0.04\% BAC, but - as in vigilance tasks - considerable impairment only occurred at higher BACs. Choice reaction time was affected at lower BACs than simple reaction time, which was - together with the critical flicker fusion frequency - the least sensitive parameter to the effects of alcohol. To conclude, most skills which are relevant for the safe operation of a vehicle are clearly impaired by BACs of 0.05\%, with motor functions being more affected than cognitive functions and complex tasks more than simple tasks. Generally, the results provided no evidence of a threshold effect for alcohol. There was no driving-related performance category for which a sudden transition from unimpaired to impaired occurred at a particular BAC level. In addition, a comparison was made between the present meta-analysis and two reviews of Moskowitz (Moskowitz \& Fiorentino, 2000; Moskowitz \& Robinson, 1988). Moskowitz reported much lower BACs at which performance was impaired. The reasons for this discrepancy lies in a different way to review scientific findings. On the one hand, Moskowitz focused on significant findings when selecting studies and findings for his reviews. On the other hand, the evaluation method used by Moskowitz ignored non-significant findings and counted each study once at the lowest BAC for which impairment was found. Those non-significant findings are as important as the significant ones in order to determine thresholds of impairment. Therefore, in contrast to Moskowitz, the present work describes the effects of alcohol with functions considering also the non-significant findings. The significance of the non-significant is emphasized with respect to the selection procedure as well as to the evaluation method.}, subject = {Trunkenheit im Verkehr}, language = {en} } @article{HolzapfelRechlLehneretal.2011, author = {Holzapfel, Boris Michael and Rechl, Hans and Lehner, Stefan and Pilge, Hakan and Gollwitzer, Hans and Steinhauser, Erwin}, title = {Alloplastic Reconstruction of the Extensor Mechanism after Resection of Tibial Sarcoma [Research Article]}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-69072}, year = {2011}, abstract = {Reconstruction of the extensor mechanism is essential for good extremity function after endoprosthetic knee replacement following tumor resection. Only a few biological methods have been able to reliably restore a functional extensor mechanism, but they are often associated with significant complication rates. Reattachment of the patellar tendon to the prosthesis using an alloplastic patellar ligament (Trevira cord) can be an appropriate alternative. In vivo and in vitro studies have already shown that complete fibrous ingrowth in polyethylene chords can be seen after a period of six months. However, until now, no biomechanical study has shown the efficacy of an alloplastic cord and its fixation device in providing sufficient stability and endurance in daily life-activity until newly formed scar tissue can take over this function. In a special test bench developed for this study, different loading regimes were applied to simulate loads during everyday life. Failure loads and failuremodes were evaluated. The properties of the cord were compared before and after physiological conditioning. It was shown that rubbing was the mode of failure under dynamic loading. Tensile forces up to 2558N did not result in material failure. Thus, using an artificial cord together with this fixation device, temporary sufficient stable fixation can be expected.}, subject = {Medizin}, language = {en} } @article{ChipperfieldDythamHovestadt2011, author = {Chipperfield, Joseph D. and Dytham, Calvin and Hovestadt, Thomas}, title = {An Updated Algorithm for the Generation of Neutral Landscapes by Spectral Synthesis}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-68938}, year = {2011}, abstract = {Background: Patterns that arise from an ecological process can be driven as much from the landscape over which the process is run as it is by some intrinsic properties of the process itself. The disentanglement of these effects is aided if it possible to run models of the process over artificial landscapes with controllable spatial properties. A number of different methods for the generation of so-called 'neutral landscapes' have been developed to provide just such a tool. Of these methods, a particular class that simulate fractional Brownian motion have shown particular promise. The existing methods of simulating fractional Brownian motion suffer from a number of problems however: they are often not easily generalisable to an arbitrary number of dimensions and produce outputs that can exhibit some undesirable artefacts. Methodology: We describe here an updated algorithm for the generation of neutral landscapes by fractional Brownian motion that do not display such undesirable properties. Using Monte Carlo simulation we assess the anisotropic properties of landscapes generated using the new algorithm described in this paper and compare it against a popular benchmark algorithm. Conclusion/Significance: The results show that the existing algorithm creates landscapes with values strongly correlated in the diagonal direction and that the new algorithm presented here corrects this artefact. A number of extensions of the algorithm described here are also highlighted: we describe how the algorithm can be employed to generate landscapes that display different properties in different dimensions and how they can be combined with an environmental gradient to produce landscapes that combine environmental variation at the local and macro scales.}, subject = {Landschaft}, language = {en} } @phdthesis{Bass2011, author = {Baß, Utz}, title = {Analysis of MBE-grown II-VI Hetero-Interfaces and Quantum-Dots by Raman Spectroscopy}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-73413}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2011}, abstract = {The material system of interest in this thesis are II-VI-semiconductors. The first part of this thesis focuses on the formation of self-assembled CdSe-based quantum dots (QD) on ZnSe. The lattice constants of ZnSe and CdSe differ as much as about 7\\% and therefore a CdSe layer grown on top of ZnSe experiences a huge strain. The aspired strain relief constitutes in the self-assembly of QDs (i.e. a roughened layer structure). Additionally, this QD layer is intermixed with Zn as this is also a possibility to decrease the strain in the layer. For CdSe on ZnSe, in Molecular Beam Epitaxy (MBE), various QD growth procedures were analysed with respect to the resulting Cd-content of the non-stoichiometric ternary (Zn,Cd)Se. The evaluation was performed by Raman Spectroscopy as the phonon frequency depends on the Cd-content. The second part of the thesis emphasis on the interface properties of n-ZnSe on n-GaAs. Different growth start procedures of the ZnSe epilayer may lead to different interface configurations with characteristic band-offsets and carrier depletion layer widths. The analysis is mainly focused on the individual depletion layer widths in the GaAs and ZnSe. This non-destructive analysis is performed by evaluating the Raman signal which comprises of phonon scattering from the depleted regions and coupled plasmon-phonon scattering from regions with free carriers.}, subject = {Zwei-Sechs-Halbleiter}, language = {en} } @phdthesis{Kraeussling2011, author = {Kr{\"a}ußling, Michael}, title = {Analysis on division patterns and transcriptional activity in embryos from medaka "Oryzias latipes" before the midblastula transition}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-66911}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2011}, abstract = {Das Studium der Entwicklung von Tieren ist eine der {\"a}ltesten Disziplinen in der Biologie. Die gesammelten Daten von unz{\"a}hligen Untersuchungen an den verschiedensten Spezies wurden dazu benutzt, um ein generelles Verst{\"a}ndnis des tierischen Lebenszykluses zu formulieren. Ein wichtiges Ergebnis der intensiven Untersuchungen war vor etwa einem Jahrhundert die Entdeckung spezifischer morphologischer Ver{\"a}nderungen, die sich w{\"a}hrend der Teilungsphase, der Zeitperiode die der Befruchtung und Aktivierung des Eies am Anfang der Embryogenese folgt, vollziehen. Diese Befunde f{\"u}hrten schlussendlich zur Formulierung des Konzepts einer „Mid-Blastula Transition" (MBT). Bisher gibt es nur eine Theorie die die Regulierung der MBT in befriedigender Weise erkl{\"a}rt. Dies ist das Model des Kern/Plasma-Verh{\"a}ltnis, welches sich aus dem Verh{\"a}ltnis DNA-Menge zu Zytoplasmavolumen ableitet. Es erkl{\"a}rt die MBT-Aktivierung durch bisher unbekannte, maternal deponierte Faktoren im Ei, welche die MBT Aktivierung kontrollieren, deren Konzentration allerdings mit jeder Zellteilung verd{\"u}nnt wird, bis sie schließlich ihre blockierende Funktion verloren haben. Zwar wurde die Existenz dieses Mechanismuses schon in zahlreichen Spezies experimentell bewiesen, allerdings bleibt er nur eine ungenaue Beschreibung der ablaufenden Prozesse und l{\"a}sst weiterhin viele Fragen unbeantwortet. Vor diesem Hintergrund hat diese Arbeit gezeigt, dass die Zellzyklen in Embryonen von Medaka (Oryzias latipes) ihre Synchronit{\"a}t schon nach dem vierten oder f{\"u}nften Teilung verlieren, und diese durch ein Teilungsmuster ersetzt wird, das als „metasynchron" bezeichnet wird. In diesem Teilungsmuster verlaufen die Zellteilungen in Wellen, die im Zentrum des Embryos beginnen und sich von dort nach außen hin radial ausbreiten. Noch ist der Sinn einer auf diese Art verlaufenden Zellteilung unbekannt, auch wenn es verschiedene Theorien gibt die versuchen den zugrunde liegenden Mechanismus zu erkl{\"a}ren. Allen voran steht die Theorie eines unterschiedlichen Zugangs zu Faktoren innerhalb des Dotters. Allerdings wird diese Theorie durch die Beobachtungen in verformten Embryonen wiederlegt, in denen sich die Teilungswellen von einer Seite des Embryos zur gegen{\"u}berliegenden Seite ausgebreitet haben. Somit bleibt der Mechanismus f{\"u}r diese Art der Zellteilung weiterhin unklar. Nicht zu vergessen ist, dass diese deformierten Embryonen eine der m{\"o}glichen Konsequenzen asymmetrischer Furchung w{\"a}hrend einer fr{\"u}hen Zellteilung sind. Asymmetrische Teilungen treten in Medaka in einer erheblichen Anzahl von Embryonen auf und haben einen direkten Einfluss auf die gleichm{\"a}ßige Verteilung des Zytoplasma. Leider war es nicht m{\"o}glich die Auswirkungen einer solchen ungleichm{\"a}ßigen Verteilung aufzudecken, auch wenn man davon ausgehen kann, dass ein ausreichend großes Ungleichgewicht zu unterschiedlichen Zeitpunkten der MBT-Aktivierung in verschiedenen Zellgruppen f{\"u}hren m{\"u}sste. {\"A}hnliche Beobachtungen wurden bereits in anderen Spezies gemacht, und es wurde vermutet, dass diese in ungleichm{\"a}ßigen Zellteilungen begr{\"u}ndet lagen. Weiterhin wurde bewiesen, dass die zygotische Transkription schon wesentlich vor dem bisher angenommenen fr{\"u}hesten Zeitpunkt aktiv ist. Dar{\"u}ber hinaus wurden Hinweise gefunden, die darauf hindeuten, dass die Transkription in Embryonen von Medaka in zwei Schritten einsetzt. Der erste Zeitpunkt ist das 16-Zellen-Stadium, in dem die ersten Zellen identifiziert wurden, die Phosphorylierung f{\"u}r RNAPII zeigten, und der zweite das64-Zellen Stadium, in dem der Anteil an p-RNAPII positiven Zellen signifikant anstieg. Ein schrittweiser Anstieg der Transkription wurde bereits in anderen Spezies beobachtet, auch wenn in diesen F{\"a}llen nur eine Erh{\"o}hung der mRNA-Menge festgestellt wurde, und nicht die unterschiedliche Anzahl an transkriptionell aktiven Zellen untersucht wurde.Zusammenfassend best{\"a}tigen und erweitern die hier gezeigten Daten die grundliegenden Kenntnisse {\"u}ber die Prozesse vor und w{\"a}hren der MBT, liefern dar{\"u}ber hinaus aber auch Anzeichen f{\"u}r viele Prozesse vor und w{\"a}hrend der MBT, die nur wenig oder gar nicht verstanden sind.}, subject = {Japank{\"a}rpfling}, language = {en} } @article{BaptistellaFlorenceMassudaBroeckeretal.2011, author = {Baptistella Florence, Michelle Etienne and Massuda, Juliana Yumi and Br{\"o}cker, Eva-Bettina and Metze, Konradin and Cintra, Maria Leticia and de Souza, Elemir Macedo}, title = {Angiogenesis in the progression of cutaneous squamous cell carcinoma: an immunohistochemical study of endothelial markers}, series = {CLINICS}, volume = {66}, journal = {CLINICS}, number = {3}, doi = {10.1590/S1807-59322011000300018}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-133650}, pages = {465-468}, year = {2011}, abstract = {OBJECTIVE: To demonstrate the role of angiogenesis in the progression of cutaneous squamous cell carcinoma. INTRODUCTION: Angiogenesis is a pivotal phenomenon in carcinogenesis. Its time course in cutaneous squamous cell carcinoma has not yet been fully established. METHODS: We studied the vascular bed in 29 solar keratoses, 30 superficially invasive squamous cell carcinomas and 30 invasive squamous cell carcinomas. The Chalkley method was used to quantify the microvascular area by comparing panendothelial (CD34) with neoangiogenesis (CD105) immunohistochemical markers. The vascular bed from non-neoplastic adjacent skin was evaluated in 8 solar keratoses, 10 superficially invasive squamous cell carcinomas and 10 invasive squamous cell carcinomas. RESULTS: The microvascular area in CD105-stained specimens significantly increased in parallel with cutaneous squamous cell carcinoma progression. However, no differences between groups were found in CD34 sections. Solar keratosis, superficially invasive squamous cell carcinoma and invasive squamous cell carcinoma samples showed significant increases in microvascular area for both CD34- and CD105-stained specimens compared with the respective adjacent skin. DISCUSSION: The angiogenic switch occurs early in the development of cutaneous squamous cell carcinoma, and the rate of neovascularization is parallel to tumor progression. In contrast to panendothelial markers, CD105 use allows a dynamic evaluation of tumor angiogenesis. CONCLUSION: This study demonstrated the dependence of skin carcinogenesis on angiogenesis.}, language = {en} } @article{StiebKelberWehneretal.2011, author = {Stieb, Sara Mae and Kelber, Christina and Wehner, R{\"u}diger and R{\"o}ssler, Wolfgang}, title = {Antennal-Lobe Organization in Desert Ants of the Genus Cataglyphis}, series = {Brain, Behavior and Evolution}, volume = {77}, journal = {Brain, Behavior and Evolution}, number = {3}, issn = {0006-8977}, doi = {10.1159/000326211}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-196815}, pages = {136-146}, year = {2011}, abstract = {Desert ants of the genus Cataglyphis possess remarkable visual navigation capabilities. Although Cataglyphis species lack a trail pheromone system, Cataglyphis fortis employs olfactory cues for detecting nest and food sites. To investigate potential adaptations in primary olfactory centers of the brain of C. fortis, we analyzed olfactory glomeruli (odor processing units) in their antennal lobes and compared them to glomeruli in different Cataglyphis species. Using confocal imaging and 3D reconstruction, we analyzed the number, size and spatial arrangement of olfactory glomeruli in C. fortis, C.albicans, C.bicolor, C.rubra, and C.noda. Workers of all Cataglyphis species have smaller numbers of glomeruli (198-249) compared to those previously found in olfactory-guided ants. Analyses in 2 species of Formica - a genus closely related to Cataglyphis - revealed substantially higher numbers of olfactory glomeruli (c. 370), which is likely to reflect the importance of olfaction in these wood ant species. Comparisons between Cataglyphis species revealed 2 special features in C. fortis. First, with c. 198 C. fortis has the lowest number of glomeruli compared to all other species. Second, a conspicuously enlarged glomerulus is located close to the antennal nerve entrance. Males of C. fortis possess a significantly smaller number of glomeruli (c. 150) compared to female workers and queens. A prominent male-specific macroglomerulus likely to be involved in sex pheromone communication occupies a position different from that of the enlarged glomerulus in females. The behavioral significance of the enlarged glomerulus in female workers remains elusive. The fact that C. fortis inhabits microhabitats (salt pans) that are avoided by all other Cataglyphis species suggests that extreme ecological conditions may not only have resulted in adaptations of visual capabilities, but also in specializations of the olfactory system.}, language = {en} } @article{RantamaekiVesaAntilaetal.2011, author = {Rantam{\"a}ki, Tomi and Vesa, Liisa and Antila, Hanna and Di Lieto, Antonio and Tammela, P{\"a}ivi and Schmitt, Angelika and Lesch, Klaus-Peter and Rios, Maribel and Castr{\´e}n, Eero}, title = {Antidepressant Drugs Transactivate TrkB Neurotrophin Receptors in the Adult Rodent Brain Independently of BDNF and Monoamine Transporter Blockade}, series = {PLoS ONE}, volume = {6}, journal = {PLoS ONE}, number = {6}, doi = {10.1371/journal.pone.0020567}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-133746}, pages = {e20567}, year = {2011}, abstract = {Background: Antidepressant drugs (ADs) have been shown to activate BDNF (brain-derived neurotrophic factor) receptor TrkB in the rodent brain but the mechanism underlying this phenomenon remains unclear. ADs act as monoamine reuptake inhibitors and after prolonged treatments regulate brain bdnf mRNA levels indicating that monoamine-BDNF signaling regulate AD-induced TrkB activation in vivo. However, recent findings demonstrate that Trk receptors can be transactivated independently of their neurotrophin ligands. Methodology: In this study we examined the role of BDNF, TrkB kinase activity and monoamine reuptake in the AD-induced TrkB activation in vivo and in vitro by employing several transgenic mouse models, cultured neurons and TrkB-expressing cell lines. Principal Findings: Using a chemical-genetic TrkB(F616A) mutant and TrkB overexpressing mice, we demonstrate that ADs specifically activate both the maturely and immaturely glycosylated forms of TrkB receptors in the brain in a TrkB kinase dependent manner. However, the tricyclic AD imipramine readily induced the phosphorylation of TrkB receptors in conditional bdnf(-/-) knock-out mice (132.4+/-8.5\% of control; P = 0.01), indicating that BDNF is not required for the TrkB activation. Moreover, using serotonin transporter (SERT) deficient mice and chemical lesions of monoaminergic neurons we show that neither a functional SERT nor monoamines are required for the TrkB phosphorylation response induced by the serotonin selective reuptake inhibitors fluoxetine or citalopram, or norepinephrine selective reuptake inhibitor reboxetine. However, neither ADs nor monoamine transmitters activated TrkB in cultured neurons or cell lines expressing TrkB receptors, arguing that ADs do not directly bind to TrkB. Conclusions: The present findings suggest that ADs transactivate brain TrkB receptors independently of BDNF and monoamine reuptake blockade and emphasize the need of an intact tissue context for the ability of ADs to induce TrkB activity in brain.}, language = {en} } @phdthesis{Tabares2011, author = {Tabares, Paula}, title = {Antimicrobial, anti-protease and immunomodulatory activities of secondary metabolites from Caribbean sponges and their associated bacteria}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-67000}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2011}, abstract = {Marine sponges and their associated bacteria have been proven to be a rich source of novel secondary metabolites with therapeutic usefulness in infection and autoimmunity. This Ph.D. project aimed to isolate bioactive secondary metabolites from the marine sponges Amphimedon compressa, Aiolochroia crassa and Theonella swinhoei as well as from bacteria associated with different Caribbean sponges, specifically actinomycetes and sphingomonads. In this study, amphitoxin was isolated from the crude methanol extract of the sponge A. compressa and it was found to have antibacterial and anti-parasitic activities. Amphitoxin showed protease inhibitory activity when tested against the mammalian protease cathepsin B and the parasitic proteases rhodesain and falcipain-2. Furthermore, miraziridine A was identified in the dichloromethane extract of the sponge T. swinhoei collected offshore Israel in the Red Sea. Miraziridine A, a natural peptide isolated previously from the marine sponge Theonella aff. mirabilis, is a potent cathepsin B inhibitor with an IC50 value of 1.4 g/mL (2.1 M). Secondary metabolites from sponge-derived bacteria were also isolated and identified. A total of 79 strains belonging to 20 genera of the order Actinomycetales and seven strains belonging to two genera of the order Sphingomonadales were cultivated from 18 different Caribbean sponges and identified by 16S rRNA gene sequencing. Seven of these strains are likely to represent novel species. Crude extracts from selected strains were found to exhibit protease inhibition against cathepsins B and L, rhodesain, and falcipain-2 as well as immunomodulatory activities such as induction of cytokine release by human peripheral blood mononuclear cells. The isolates Sphingobium sp. CO105 and Lapillicoccus sp. BA53 were selected for cultivation, extraction and purification of bioactive metabolites based on initial bioactive screening results. The isoalloxazine isolumichrome was isolated from the strain Sphingobium sp. CO105 which inhibited the protease rhodesain with an IC50 of 0.2 M. The strain Lapillicoccus sp. BA53 was found to produce p-aminosalicylic acid methyl ester, which showed activity against the proteases cathepsins B and L, falcipain-2 and rhodesain. These results highlight the significance of marine sponge-associated bacteria to produce bioactive secondary metabolites with therapeutic potential in the treatment of infectious diseases and disorders of the immune system.}, subject = {Schw{\"a}mme}, language = {en} } @phdthesis{Gerdau2011, author = {Gerdau, Ole}, title = {Applicability of Intrinsic Value Models at the Segmented Chinese Stock Market}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-55652}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2011}, abstract = {Ziel dieser Arbeit ist es, die Anwendbarkeit intrinsischer Wertmodelle in dem nach inl{\"a}ndischen und ausl{\"a}ndischen Investoren segmentierten chinesischen Kapitalmarkt zu untersuchen. Innerhalb des Frameworks der internationalen Portfolio Investment Theorie werden segmentspezifische Preisunterschiede nicht irrationalem Verhalten zugeschrieben, sondern als in {\"U}bereinstimmung mit {\"o}konomischer Theorie angesehen. Der theoretische Vergleich von Gleichgewichts- und intrinsischen Wertmodellen l{\"a}sst letztere f{\"u}r das chinesische Marktumfeld geeigneter erscheinen. Vor diesem Hintergrund wird in dieser Arbeit die Relevanz intrinsischer Wertmodelle f{\"u}r chinesische Aktienpreise empirisch untersucht. Demnach sind Preisunterschiede auf ungleiche Investitionsm{\"o}glichkeiten und segmentspezifische Charakteristika zur{\"u}ckzuf{\"u}hren. Dennoch f{\"u}hren die Ergebnisse im Hinblick auf den inl{\"a}ndischen und Hongkong-chinesischen risikolosen Zinsproxys zu dem Schluss, dass intrinsische Wertmodelle gegen{\"u}ber linearen Faktormodellen nicht als geeigneter angesehen werden k{\"o}nnen.}, subject = {China}, language = {en} } @phdthesis{Simon2011, author = {Simon, Dennis}, title = {Aspects in the fate of primordial vacuum bubbles}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-67019}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2011}, abstract = {At the present day the idea of cosmological inflation constitutes an important extension of Big Bang theory. Since its appearance in the early 1980's many physical mechanisms have been worked out that put the inflationary expansion of space that proceeds the Hot Big Bang on a sound theoretical basis. Among the achievements of the theory of inflation are the explanaition of the almost Euclidean geometry of 'visible'space, the homogeneity of the cosmic background radiation but, in particular, also the tiny inhomogeneity of a relative amplitude of 10-5. In many models of inflation the inflationary phase ends only locally. Hence, there exists the possibility that the inflationary process still goes on in regions beyond our visual horizon. This property is commonly termed 'eternal inflation'. In the framework of a cosmological scalar fields, eternal inflation can manifest itself in a variety of ways. On the one hand fluctuations of the field, if sufficiently large, can work against the classical trajectory and therefore counteract the end of inflation. In regions where this is the case the accelerated expansion of space continues at a higher rate. In parts of this region the process may replicate itself again and in this way may continue throughout all of time. Space and field are said to reproduce themselves. On the other hand, a mechanism that can occur in addition or independent of the latter, is so called vacuum tunneling. If the potential of the scalar field has several local minima, a semi-classical calculation suggests that within a spherical region, a bubble, the field can tunnel to another state. The respective tunneling rates depend on the potential difference and the shape of the potential between the states. Generally, the tunneling rate is exponentially suppressed, which means that the inflation lasts for a long time before tunneling takes place. The ongoing inflationary process effectively reduces local curvature, anistotropy and inhomogeneity, so that this property is known as the 'cosmic no-hair conjecture'. For this reason cosmological considerations of the evolution of bubbles thus far almost entirely involved vacuum (de Sitter) backgrounds. However, new insights in the framework of string theory suggest high tunneling rates which allow for the possibility of bubble nucleation in non-vacuum dominated backgrounds. In this case the evolution of the bubble depends on the properties of the background spacetime. A deeper introduction in chapter 4 is followed by the presentation of the Lema{\^i}tre-Tolman spacetime in chapter 5 which constitutes the background spacetime in the study of the effect of matter and inhomogeneity on the evolution of vacuum bubbles. In chapter 6 we explicitly describe the application of the 'thin-shell' formalism and the resulting system of equations. This is succeeded in chapter 7 by the detailed analysis of bubble evolution in various limits of the Lema{\^i}tre-Tolman spacetime and a Robertson-Walker spacetime with a rapid phase transition. The central observations are that the presence of dust, at a fixed surface energy density, goes along with a smaller nucleation volume and possibly leads to a a collapse of the bubble. In an expanding background, the radially inhomogeneous dust profile is efficiently diluted so that there is essentially no effect on the evolution of the domain wall. This changes in a radially inhomogeneous curvature profile, positive curvature decelerates the expansion of the bubble. Moreover, we point out that the adopted approach does not allow for a treatment of a, physically expected, matter transfer so that the results are to be understood as preliminary under this caveat. In the second part of this thesis we consider potential observable consequences of bubble collisions in the cosmic microwave background radiation. The topological nature of the signal suggests the use of statistics that are well suited to quantify the morphological properties of the temperature fluctuations. In chapter 10 we present Minkowski Functionals (MFs) that exactly provide such statistics. The presented error analysis allows for a higher precision of numerical MFs in comparison to earlier methods. In chapter 12 we present the application of our algorithm to a Gaussian and a collision map. We motivate the expected MFs and extract their numerical counterparts. We find that our least-squares fitting procedure accurately reproduces an underlying signal only when a large number of realizations of maps are averaged over, while for a single WMAP and PLANCK resolution map, only when a highly prominent disk, with |δT| = 2√σG and ϑd = 40◦, we are able to recover the result. This is unfortunate, as it means that MF are intrinsically too noisy to be able to distinguish cold and hot spots in the CMB for small sizes.}, subject = {Kosmologie}, language = {en} } @unpublished{Nassourou2011, author = {Nassourou, Mohamadou}, title = {Assisting Analysis and Understanding of Quran Search Results with Interactive Scatter Plots and Tables}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-55840}, year = {2011}, abstract = {The Quran is the holy book of Islam consisting of 6236 verses divided into 114 chapters called suras. Many verses are similar and even identical. Searching for similar texts (e.g verses) could return thousands of verses, that when displayed completely or partly as textual list would make analysis and understanding difficult and confusing. Moreover it would be visually impossible to instantly figure out the overall distribution of the retrieved verses in the Quran. As consequence reading and analyzing the verses would be tedious and unintuitive. In this study a combination of interactive scatter plots and tables has been developed to assist analysis and understanding of the search result. Retrieved verses are clustered by chapters, and a weight is assigned to each cluster according to number of verses it contains, so that users could visually identify most relevant areas, and figure out the places of revelation of the verses. Users visualize the complete result and can select a region of the plot to zoom in, click on a marker to display a table containing verses with English translation side by side.}, subject = {Text Mining}, language = {en} } @unpublished{Nassourou2011, author = {Nassourou, Mohamadou}, title = {Assisting Understanding, Retention, and Dissemination of Religious Texts Knowledge with Modeling, and Visualization Techniques: The Case of The Quran}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-55927}, year = {2011}, abstract = {Learning a book in general involves reading it, underlining important words, adding comments, summarizing some passages, and marking up some text or concepts. Once deeper understanding is achieved, one would like to organize and manage her/his knowledge in such a way that, it could be easily remembered and efficiently transmitted to others. In this paper, books organized in terms of chapters consisting of verses, are considered as the source of knowledge to be modeled. The knowledge model consists of verses with their metadata and semantic annotations. The metadata represent the multiple perspectives of knowledge modeling. Verses with their metadata and annotations form a meta-model, which will be published on a web Mashup. The meta-model with linking between its elements constitute a knowledge base. An XML-based annotation system breaking down the learning process into specific tasks, helps constructing the desired meta-model. The system is made up of user interfaces for creating metadata, annotating chapters' contents according to user selected semantics, and templates for publishing the generated knowledge on the Internet. The proposed software system improves comprehension and retention of knowledge contained in religious texts through modeling and visualization. The system has been applied to the Quran, and the result obtained shows that multiple perspectives of information modeling can be successfully applied to religious texts. It is expected that this short ongoing study would motivate others to engage in devising and offering software systems for cross-religions learning.}, subject = {Wissensmanagement}, language = {en} } @article{CarstenAGorskiLietal.2011, author = {Carsten A., B{\"o}ger and Gorski, Mathias and Li, Man and Hoffmann, Michael M. and Huang, Chunmei and Yang, Qiong and Teumer, Alexander and Krane, Vera and O'Seaghdha, Conall M. and Kutalik, Zolt{\´a}n and Wichmann, H.-Erich and Haak, Thomas and Boes, Eva and Coassin, Stefan and Coresh, Josef and Kollerits, Barbara and Haun, Margot and Paulweber, Bernhard and K{\"o}ttgen, Anna and Li, Guo and Shlipak, Michael G. and Powe, Neil and Hwang, Shih-Jen and Dehghan, Abbas and Rivadeneira, Fernando and Uitterlinden, Andr{\´e} and Hofman, Albert and Beckmann, Jacques S. and Kr{\"a}mer, Bernhard K. and Witteman, Jacqueline and Bochud, Murielle and Siscovick, David and Rettig, Rainer and Kronenberg, Florian and Wanner, Christoph and Thadhani, Ravi I. and Heid, Iris M. and Fox, Caroline S. and Kao, W.H.}, title = {Association of eGFR-Related Loci Identified by GWAS with Incident CKD and ESRD}, series = {PLoS Genetics}, volume = {7}, journal = {PLoS Genetics}, number = {9}, doi = {10.1371/journal.pgen.1002292}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-133758}, pages = {e1002292}, year = {2011}, abstract = {Family studies suggest a genetic component to the etiology of chronic kidney disease (CKD) and end stage renal disease (ESRD). Previously, we identified 16 loci for eGFR in genome-wide association studies, but the associations of these single nucleotide polymorphisms (SNPs) for incident CKD or ESRD are unknown. We thus investigated the association of these loci with incident CKD in 26,308 individuals of European ancestry free of CKD at baseline drawn from eight population-based cohorts followed for a median of 7.2 years (including 2,122 incident CKD cases defined as eGFR < 60ml/min/1.73m(2) at follow-up) and with ESRD in four case-control studies in subjects of European ancestry (3,775 cases, 4,577 controls). SNPs at 11 of the 16 loci (UMOD, PRKAG2, ANXA9, DAB2, SHROOM3, DACH1, STC1, SLC34A1, ALMS1/NAT8, UBE2Q2, and GCKR) were associated with incident CKD; p-values ranged from p = 4.1e-9 in UMOD to p = 0.03 in GCKR. After adjusting for baseline eGFR, six of these loci remained significantly associated with incident CKD (UMOD, PRKAG2, ANXA9, DAB2, DACH1, and STC1). SNPs in UMOD (OR = 0.92, p = 0.04) and GCKR (OR = 0.93, p = 0.03) were nominally associated with ESRD. In summary, the majority of eGFR-related loci are either associated or show a strong trend towards association with incident CKD, but have modest associations with ESRD in individuals of European descent. Additional work is required to characterize the association of genetic determinants of CKD and ESRD at different stages of disease progression.}, language = {en} } @article{ReinardsAlbersBrinkmanetal.2011, author = {Reinards, THCM and Albers, HM and Brinkman, DMC and Kamphuis, SSM and van Rossum, MAJ and Hoppenreijs, EPAH and Girschick, HJ and Wouters, C and Saurenmann, RK and Houwing-Duistermaat, JJ and Toes, REM and Huizinga, TWJ and ten Cate, R and Schilham, MW}, title = {Association of the CCR5Δ32 variant with juvenile idiopathic arthritis in a meta-analysis}, series = {Pediatric Rheumatology}, volume = {9}, journal = {Pediatric Rheumatology}, number = {Suppl. 1}, doi = {10.1186/1546-0096-9-S1-P287}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-133763}, pages = {P287}, year = {2011}, abstract = {No abstract available.}, language = {en} } @article{ReinardsAlbersBrinkmanetal.2011, author = {Reinards, THCM and Albers, HM and Brinkman, DMC and Kamphuis, SSM and van Rossum, MAJ and Hoppenreijs, EPAH and Girschick, HJ and Wouters, C and Saurenmann, RK and Houwing-Duistermaat, JJ and Toes, REM and Huizinga, TWJ and ten Cate, R and Schilham, MW}, title = {Association of the CD226 (DNAM-1) Gly307Ser polymorphism with juvenile idiopathic arthritis}, series = {Pediatric Rheumatology}, volume = {9}, journal = {Pediatric Rheumatology}, number = {Suppl. 1}, doi = {10.1186/1546-0096-9-S1-P286}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-133773}, pages = {P286}, year = {2011}, abstract = {No abstract available.}, language = {en} } @article{SchmittKellerNourkamiTutdibietal.2011, author = {Schmitt, Jana and Keller, Andreas and Nourkami-Tutdibi, Nasenien and Heisel, Sabrina and Habel, Nunja and Leidinger, Petra and Ludwig, Nicole and Gessler, Manfred and Graf, Norbert and Berthold, Frank and Lenhof, Hans-Peter and Meese, Eckart}, title = {Autoantibody Signature Differentiates Wilms Tumor Patients from Neuroblastoma Patients}, series = {PLoS ONE}, volume = {6}, journal = {PLoS ONE}, number = {12}, doi = {10.1371/journal.pone.0028951}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-133794}, pages = {e28951}, year = {2011}, abstract = {Several studies report autoantibody signatures in cancer. The majority of these studies analyzed adult tumors and compared the seroreactivity pattern of tumor patients with the pattern in healthy controls. Here, we compared the autoimmune response in patients with neuroblastoma and patients with Wilms tumor representing two different childhood tumors. We were able to differentiate untreated neuroblastoma patients from untreated Wilms tumor patients with an accuracy of 86.8\%, a sensitivity of 87.0\% and a specificity of 86.7\%. The separation of treated neuroblastoma patients from treated Wilms tumor patients' yielded comparable results with an accuracy of 83.8\%. We furthermore identified the antigens that contribute most to the differentiation between both tumor types. The analysis of these antigens revealed that neuroblastoma was considerably more immunogenic than Wilms tumor. The reported antigens have not been found to be relevant for comparative analyses between other tumors and controls. In summary, neuroblastoma appears as a highly immunogenic tumor as demonstrated by the extended number of antigens that separate this tumor from Wilms tumor.}, language = {en} } @article{CamachoSchmidCabrero2011, author = {Camacho, J.P.M. and Schmid, M. and Cabrero, J.}, title = {B Chromosomes and Sex in Animals}, series = {Sexual Development}, volume = {5}, journal = {Sexual Development}, number = {3}, issn = {1661-5425}, doi = {10.1159/000324930}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-196321}, pages = {155-166}, year = {2011}, abstract = {Supernumerary (B) chromosomes are dispensable elements found in many eukaryote genomes in addition to standard (A) chromosomes. In many respects, B chromosomes resemble sex chromosomes, so that a common ancestry for them has frequently been suggested. For instance, B chromosomes in grasshoppers, and other insects, show a pycnotic cycle of condensation-decondensation during meiosis remarkably similar to that of the X chromosome. In some cases, B chromosome size is even very similar to that of the X chromosome. These resemblances have led to suggest the X as the B ancestor in many cases. In addition, sex chromosome origin from B chromosomes has also been suggested. In this article, we review the existing evidence for both evolutionary pathways, as well as sex differences for B frequency at adult and embryo progeny levels, B chromosome effects or B chromosome transmission. In addition, we review cases found in the literature showing sex-ratio distortion associated with B chromosome presence, the most extreme case being the paternal sex ratio (PSR) chromosomes in some Hymenoptera. We finally analyse the possibility of B chromosome regularisation within the host genome and, as a consequence of it, whether B chromosomes can become regular members of the host genome.}, language = {en} } @article{GrossAmuzudeCimanetal.2011, author = {Groß, Uwe and Amuzu, Sylvarius K. and de Ciman, Ring and Kassimova, Iparkhan and Groß, Lisa and Rabsch, Wolfgang and Rosenberg, Ulrike and Schulze, Marco and Stich, August and Zimmermann, Ortrud}, title = {Bacteremia and Antimicrobial Drug Resistance over Time, Ghana}, series = {Emerging Infectious Diseases}, volume = {17}, journal = {Emerging Infectious Diseases}, number = {10}, doi = {10.3201/edi1710.110327}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-133805}, pages = {1879-1882}, year = {2011}, abstract = {Bacterial distribution and antimicrobial drug resistance were monitored in patients with bacterial bloodstream infections in rural hospitals in Ghana. In 2001-2002 and in 2009, Salmonella enterica serovar Typhi was the most prevalent pathogen. Although most S. enterica serovar Typhi isolates were chloramphenicol resistant, all isolates tested were susceptible to ciprofloxacin.}, language = {en} } @article{HessStritzkerHaertletal.2011, author = {Hess, Michael and Stritzker, Jochen and H{\"a}rtl, Barbara and Sturm, Julia and Gentschev, Ivaylo and Szalay, Aladar}, title = {Bacterial glucuronidase as general marker for oncolytic virotherapy or other biological therapies}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-69163}, year = {2011}, abstract = {Background: Oncolytic viral tumor therapy is an emerging field in the fight against cancer with rising numbers of clinical trials and the first clinically approved product (Adenovirus for the treatment of Head and Neck Cancer in China) in this field. Yet, until recently no general (bio)marker or reporter gene was described that could be used to evaluate successful tumor colonization and/or transgene expression in other biological therapies. Methods: Here, a bacterial glucuronidase (GusA) encoded by biological therapeutics (e.g. oncolytic viruses) was used as reporter system. Results: Using fluorogenic probes that were specifically activated by glucuronidase we could show 1) preferential activation in tumors, 2) rena l excretion of the activated fluorescent compounds and 3) reproducible detection of GusA in the serum of oncolytic vaccinia virus treated, tumor bearing mice in several tumor models. Time course studies revealed that reliable differentiation between tumor bearing and healthy mice can be done as early as 9 days post injection of the virus. Regarding the sensitivity of the newly developed assay system, we could show that a single infected tumor cell could be reliably detected in this assay. Conclusion: GusA therefore has the potential to be used as a general marker in the preclinical and clinical evaluation of (novel) biological therapies as well as being useful for the detection of rare cells such as circulating tumor cells}, subject = {Virologie}, language = {en} } @phdthesis{Polzien2011, author = {Polzien, Lisa}, title = {BAD Phosphorylation: A Novel Link between Apoptosis and Cancer}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-56919}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2011}, abstract = {BAD (Bcl-2 antagonist of cell death, Bcl-2 associated death promoter) is a pro-apoptotic member of the Bcl-2 protein family that is regulated by phosphorylation in response to survival factors. Although much attention has been devoted to the identification of phosphorylation sites in murine BAD (mBAD), little data are available with respect to phosphorylation of human BAD (hBAD) protein. In this work, we investigated the quantitative contribution of BAD targeting kinases in phosphorylating serines 75, 99 and 118 of hBAD (Chapter 3.1). Our results indicate that RAF kinases phosphorylate hBAD in vivo at these established serine residues. RAF-induced phosphorylation of hBAD was not prevented by MEK inhibitors but could be reduced to control levels by use of the RAF inhibitor Sorafenib (BAY 43-9006). Consistently, expression of active RAF suppressed apoptosis induced by hBAD and the inhibition of colony formation caused by hBAD could be prevented by RAF. In addition, using surface plasmon resonance technique we analyzed the direct consequences of hBAD phosphorylation by RAF with respect to complex formation of BAD with 14-3-3 proteins and Bcl-XL. Phosphorylation of hBAD by active RAF promotes 14-3-3 protein association, whereby the phosphoserine 99 represents the major binding site. Furthermore, we demonstrate in this work that hBAD forms channels in planar bilayer membranes in vitro. This pore-forming capacity is dependent on phosphorylation status and interaction with 14-3-3 proteins. Additionally, we show that hBAD pores possess a funnel-shaped geometry that can be entered by ions and non-charged molecules up to 200 Da (Chapter 3.2). Since both lipid binding domains of hBAD (LBD1 and LBD2) are located within the C-terminal region, we investigated this part of the protein with respect to its structural properties (Chapter 3.3). Our results demonstrate that the C-terminus of hBAD possesses an ordered β-sheet structure in aqueous solution that adopts helical disposition upon interaction with lipid membranes. Additionally, we show that the interaction of the C-terminal segment of hBAD with the BH3 domain results in the formation of permanently open pores, whereby the phosphorylation of serine 118 proved to be necessary for effective pore-formation. In contrast, phosphorylation of serine 99 in combination with 14-3-3 association suppresses formation of channels. These results indicate that the C-terminal part of hBAD controls hBAD function by structural transitions, lipid binding and phosphorylation. Using mass spectrometry we identified in this work, besides the established in vivo phosphorylation sites at serines 75, 99 and 118, several novel hBAD phosphorylation sites (serines 25, 32/34, 97, 124 and 134, Chapter 3.1). To further analyze the regulation of hBAD function, we investigated the role of these newly identified phosphorylation sites on BAD-mediated apoptosis. We found that in contrast to the N-terminal phosphorylation sites, the C-terminal serines 124 and 134 act in an anti-apoptotic manner (Chapter 3.4). Our results further indicate that RAF kinases and PAK1 effectively phosphorylate BAD at serine 134. Notably, in the presence of wild type hBAD, co-expression of survival kinases, such as RAF and PAK1, leads to a strongly increased proliferation, whereas substitution of serine 134 by alanine abolishes this process. Furthermore, we identified hBAD serine 134 to be strongly involved in survival signaling in B-RAF-V600E containing tumor cells and found phosphorylation of this residue to be crucial for efficient proliferation in these cells. Collectively, our findings provide new insights into the regulation of hBAD function by phosphorylation and its role in cancer signaling.}, subject = {Krebs }, language = {en} } @phdthesis{Stock2011, author = {Stock, Patrick Maria}, title = {Binding site contribution in high resolution records of nicotinic receptor channel currents}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-71769}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2011}, abstract = {The nicotinic acetylcholine receptor of skeletal muscle is one of the best-investigated synaptic proteins and often serves as model for the entire family of pentameric ligand gated ion channels (pLGICs). Receptors of this superfamily share a common architecture. After binding the agonist the characteristic C-loop structure closes around the ligand-binding site and triggers a wave of conformational changes that spread through the protein and finally result in the opening of the channel gate. As shown before, high-resolution single channel data can hardly be described by simple kinetic mechanisms (Parzefall et al., 1998, Hallermann et al., 2005). Recent advances in the field of kinetic modelling on receptor currents demonstrate that the introduction of additional short lived shut states in kinetic schemes enhances the quality of estimates of reaction rates. The additional shut states that immediately follow ligand bound states in the mechanism are suggested to resemble the closing movement of the C-loop (Lape et al., 2008; Mukhtasimova et al., 2009). It has not been described yet whether and how the structural differences of the 2 binding sites of the receptor influence the opening behaviour. To address this question, high-resolution single channel recordings, in combination with agonists that are known to exhibit different binding site selectivity, were performed. Thereby, a detailed description of the binding site dependent generation of channel currents is possible. At the embryonic mouse-muscle receptor used in this study the ligand binding sites are located at the α-γ and α-δ subunit interfaces. By allocation of opening characteristics to the α-δ and α-γ sites it is possible to show the binding site dependent activation of distinct kinetic states. Furthermore, it will be shown that the recently introduced short-lived shut states are sufficient to describe high-resolution single channel data. Finally an enhanced kinetic mechanism based on the 'primed states' model, published in 2009 by Mukhtasimova et al., will be presented. In this model the structurally diverse α-δ and α-γ binding sites elicit different kinetic channel characteristics. Thus the complex high-resolution kinetic characteristics of the embryonic receptor can be described coherently.}, subject = {Nicotinischer Acetylcholinrezeptor}, language = {en} } @phdthesis{Beitzinger2011, author = {Beitzinger, Christoph}, title = {Binding-, Blocking- and Translocation-Processes Concerning Anthrax-Toxin and Related Bacterial Protein-Toxins of the AB7-Family}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-70052}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2011}, abstract = {Bacterial protein toxins belong to the most potent toxins which are known. They exist in many different forms and are part of our every day live. Some of them are spread by the bacteria during infections and therefore play a crucial role in pathogenicity of these strains. Others are secreted as a defense mechanism and could be uptaken with spoiled food. Concerning toxicity, some of the binary toxins of the AB7-type belong to the most potent and dangerous toxins in the world. Even very small amounts of these proteins are able to cause severe symptoms during an infection with pathogen species of the genus Clostridium or Bacillus. Apart from the thread the toxins constitute, they exhibit a unique way of intoxication. Members of the AB7-toxin family consist of a pore-forming subunit B, that acts as a molecular syringe to translocate the enzymatic moieties A into the cytosol of target cells. This complex mechanism does not only kill cells with high efficiency and therefore should be studied for treatment, but also displays a possibility to address certain cells with a specific protein cargo if used as a molecular delivery tool. Concerning both issues, binding and translocation of the channel are the crucial steps to either block or modify the system in the desired way. To gain deeper insight into the transport of binary toxins the structure of the B subunit is of great importance, but being a membrane protein, no crystal could be obtained up to now for either protective antigen (PA) of Anthrax toxin or any other AB7-type binding domain. Therefore, the method of choice in this work is an electro-physical approach using the so-called black-lipid-bilayer system for determination of biophysical constants. Additionally, diverse cell based assays serve as a proving method for the data gained during in vitro measurements. Further information was gathered with specially designed mutants of the protein channel. The first part of this thesis focuses on the translocation process and its possible use as a molecular tool to deliver protein cargo into special cell types. The task was addressed by measuring the binding of different effector proteins related and unrelated to the AB7 toxin family. These proteins were tested in titration experiments for the blockage of the ion current through a membrane saturated with toxin channels. Especially the influence of positively charged His-tags has been determined in detail for PA and C2II. As described in chapter 2, a His-tag transferred the ability of being transported by PA, but not by C2II, to different proteins like EDIN (from S. aureus) in vitro and in cell-based experiments. This process was found to change the well-known voltage-dependency of PA to a huge extend and therefore is related to membrane potentials which play a crucial role in many processes in living cells. Chapter 3 sums up findings, which depict that binding partners of PA share certain common motives. These could be detected in a broad range of substrates, ranging from simple ions in an electrolyte over small molecules to complex protein effectors. The gathered information could be further used to design blocker-substrates for treatment of Anthrax infections or tags, which render PA possible as a molecular syringe for cargo proteins. The deeper insight to homologies and differences of binary toxin components is the core of chapter 4, in which the cross-reactivity of Anthrax and C2-toxin was analyzed. The presented results lead to a better understanding of different motives involved in binding and translocation to and via the B components PA and C2II, as well as the enzymatically active A moieties edema factor (EF), lethal factor (LF) and C2I. In the second part of the thesis, the blockage of intoxication is the center of interest. Therefore, chapter 5 focuses on the analysis of specially designed blocker-substrate molecules for PA. These molecules form a plug in the pore, abolishing translocation of the enzymatic units. Especially, if multi-resistant strains of Anthrax (said to be already produced in Russia as a biological weapon) are taken into consideration, these substrates could stop intoxication and buy time, to deal with the infection. Chapter 6 describes the blockage of PA-channels by anti-His antibody from the trans-side of the porin, an effect which was not described for any other antibody before. Interestingly, even mutation of the estimated target amino acid Histidine 310 to Glycine could not interfere with this ionic strength dependent binding.}, subject = {Bacillus anthracis}, language = {en} } @phdthesis{Sengupta2011, author = {Sengupta, Sanchita}, title = {Bio-inspired Zinc Chlorin Dye Assemblies for Supramolecular Electronics}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-66935}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2011}, abstract = {Chlorophylls are the most important pigments owing to their involvement in photosynthesis. They perform multiple functions that arise due to their optical and redox as well as packing properties. Semisynthetic zinc chlorins investigated in this thesis are the counterparts for the natural protein-free bacteriochlorophyll (BChl) c assemblies in light-harvesting (LH) systems in bacterial chlorosomes. The major advantage of the zinc chlorin model compounds over the native BChls lies in their facile semisynthetic accessibility from chlorophyll a (Chl a), their higher chemical stability and the possibility to influence their packing by suitable chemical modifications of peripheral side chains. Whilst the favorable excitonic properties and the suitability of ZnChl and natural BChl c dye aggregates for long distance exciton transport are well documented, charge transport properties of aggregates of semisynthetic ZnChls are hitherto unexplored. The present study involves structural elucidations of aggregates of a variety of semisynthetic zinc chlorin derivatives in solution, in solid state and on surfaces by combination of spectroscopic, crystallographic and microscopic techniques, followed by investigation of charge transport properties and conductivities of these aggregates. Chart 1 shows the different ZnChls synthesized in this work that are functionalized with hydroxy or methoxy substituents at 31 position and contain different substituents at the 172-position benzyl ester functional group. The self-assembly of these dyes is strongly dependent upon their chemical structures. While ZnChls 1a, 2a, 3, which are functionalized with 31-hydroxy group bearing dodecyl and oligoethylene glycol side chains form well-soluble rod aggregates, the corresponding 31-methoxy functionalized counterparts 1b, 2b form stacks in solution and on surfaces. These supramolecular polymers have been studied in detail in Chapter 3 by UV/Vis and circular dichroism (CD) spectroscopy and dynamic light scattering (DLS). These studies provided useful insights into the aggregation process of these two types of aggregates. Whereas 31-hydroxy functionalized ZnChl 1a self-assemble into rod aggregates via an isodesmic mechanism, corresponding stack aggregates of ZnChl 1b are formed by a cooperative nucleation-elongation pathway. Detailed electron microscopic studies such as transmission electron microscopy (TEM) and scanning transmission electron microscopy (STEM) provided unequivocal evidence for hollow tubular nanostructures of water-soluble 31-hydroxy zinc chlorin 3 aggregates for the first time. The measured tube diameter of ~ 5-6 nm of these aggregates is in excellent agreement with electron microscopy data of BChl c rod aggregates in chlorosomes (Chloroflexus aurantiacus, diameter ~ 5-6 nm) and thus complied with the tubular model postulated by Holzwarth and Schaffner... In concord with their highly organized structures, micrometer-scale one dimensionality, robust nature and efficient charge transport capabilities, these self-assembled ZnChl nanotubular, stack and liquid crystalline assemblies are highly promising for supramolecular electronic applications. Research efforts in utilizing these assemblies for (opto)electronic device fabrication, for instance, in organic field effect transistors, should thus be rewarding in the future...}, subject = {Supramolekulare Chemie}, language = {en} } @article{EberleinBroeerVandevoordeetal.2011, author = {Eberlein, Uta and Br{\"o}er, J{\"o}rn Hendrik and Vandevoorde, Charlot and Santos, Paula and Bardi{\`e}s, Manuel and Bacher, Klaus and Nosske, Dietmar and Lassmann, Michael}, title = {Biokinetics and dosimetry of commonly used radiopharmaceuticals in diagnostic nuclear medicine - a review}, series = {European Journal of Nuclear Medicine and Molecular Imaging}, volume = {38}, journal = {European Journal of Nuclear Medicine and Molecular Imaging}, number = {12}, doi = {10.1007/s00259-011-1904-z}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-133846}, pages = {2269-2281}, year = {2011}, abstract = {Purpose The impact on patients' health of radiopharmaceuticals in nuclear medicine diagnostics has not until now been evaluated systematically in a European context. Therefore, as part of the EU-funded Project PEDDOSE.NET (www.​peddose.​net), we review and summarize the current knowledge on biokinetics and dosimetry of commonly used diagnostic radiopharmaceuticals. Methods A detailed literature search on published biokinetic and dosimetric data was performed mostly via PubMed (www.​ncbi.​nlm.​nih.​gov/​pubmed). In principle the criteria for inclusion of data followed the EANM Dosimetry Committee guidance document on good clinical reporting. Results Data on dosimetry and biokinetics can be difficult to find, are scattered in various journals and, especially in paediatric nuclear medicine, are very scarce. The data collection and calculation methods vary with respect to the time-points, bladder voiding, dose assessment after the last data point and the way the effective dose was calculated. In many studies the number of subjects included for obtaining biokinetic and dosimetry data was fewer than ten, and some of the biokinetic data were acquired more than 20 years ago. Conclusion It would be of interest to generate new data on biokinetics and dosimetry in diagnostic nuclear medicine using state-of-the-art equipment and more uniform dosimetry protocols. For easier public access to dosimetry data for diagnostic radiopharmaceuticals, a database containing these data should be created and maintained.}, language = {en} } @article{GerlachMaetzlerBroichetal.2011, author = {Gerlach, Manfred and Maetzler, Walter and Broich, Karl and Hampel, Harald and Rems, Lucas and Reum, Torsten and Riederer, Peter and St{\"o}ffler, Albrecht and Streffer, Johannes and Berg, Daniela}, title = {Biomarker candidates of neurodegeneration in Parkinson's disease for the evaluation of disease-modifying therapeutics}, series = {Journal of Neural Transmission}, volume = {119}, journal = {Journal of Neural Transmission}, number = {1}, doi = {10.1007/s00702-011-0682-x}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-133856}, pages = {39-52}, year = {2011}, abstract = {Reliable biomarkers that can be used for early diagnosis and tracking disease progression are the cornerstone of the development of disease-modifying treatments for Parkinson's disease (PD). The German Society of Experimental and Clinical Neurotherapeutics (GESENT) has convened a Working Group to review the current status of proposed biomarkers of neurodegeneration according to the following criteria and to develop a consensus statement on biomarker candidates for evaluation of disease-modifying therapeutics in PD. The criteria proposed are that the biomarker should be linked to fundamental features of PD neuropathology and mechanisms underlying neurodegeneration in PD, should be correlated to disease progression assessed by clinical rating scales, should monitor the actual disease status, should be pre-clinically validated, and confirmed by at least two independent studies conducted by qualified investigators with the results published in peer-reviewed journals. To date, available data have not yet revealed one reliable biomarker to detect early neurodegeneration in PD and to detect and monitor effects of drug candidates on the disease process, but some promising biomarker candidates, such as antibodies against neuromelanin, pathological forms of α-synuclein, DJ-1, and patterns of gene expression, metabolomic and protein profiling exist. Almost all of the biomarker candidates were not investigated in relation to effects of treatment, validated in experimental models of PD and confirmed in independent studies.}, language = {en} } @article{OndruschKreft2011, author = {Ondrusch, Nicolai and Kreft, J{\"u}rgen}, title = {Blue and Red Light Modulates SigB-Dependent Gene Transcription, Swimming Motility and Invasiveness in \(Listeria\) \(monocytogenes\)}, series = {PLoS ONE}, volume = {6}, journal = {PLoS ONE}, number = {1}, doi = {10.1371/journal.pone.0016151}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-134050}, pages = {e16151}, year = {2011}, abstract = {Background: In a number of gram-positive bacteria, including Listeria, the general stress response is regulated by the alternative sigma factor B (SigB). Common stressors which lead to the activation of SigB and the SigB-dependent regulon are high osmolarity, acid and several more. Recently is has been shown that also blue and red light activates SigB in Bacillus subtilis. Methodology/Principal Findings: By qRT-PCR we analyzed the transcriptional response of the pathogen L. monocytogenes to blue and red light in wild type bacteria and in isogenic deletion mutants for the putative blue-light receptor Lmo0799 and the stress sigma factor SigB. It was found that both blue (455 nm) and red (625 nm) light induced the transcription of sigB and SigB-dependent genes, this induction was completely abolished in the SigB mutant. The blue-light effect was largely dependent on Lmo0799, proving that this protein is a genuine blue-light receptor. The deletion of lmo0799 enhanced the red-light effect, the underlying mechanism as well as that of SigB activation by red light remains unknown. Blue light led to an increased transcription of the internalin A/B genes and of bacterial invasiveness for Caco-2 enterocytes. Exposure to blue light also strongly inhibited swimming motility of the bacteria in a Lmo0799- and SigB-dependent manner, red light had no effect there. Conclusions/Significance: Our data established that visible, in particular blue light is an important environmental signal with an impact on gene expression and physiology of the non-phototrophic bacterium L. monocytogenes. In natural environments these effects will result in sometimes random but potentially also cyclic fluctuations of gene activity, depending on the light conditions prevailing in the respective habitat.}, language = {en} } @article{OndruschKreft2011, author = {Ondrusch, Nicolai and Kreft, J{\"u}rgen}, title = {Blue and Red Light Modulates SigB-Dependent Gene Transcription, Swimming Motility and Invasiveness in Listeria monocytogenes}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-75451}, year = {2011}, abstract = {Background: In a number of gram-positive bacteria, including Listeria, the general stress response is regulated by the alternative sigma factor B (SigB). Common stressors which lead to the activation of SigB and the SigB-dependent regulon are high osmolarity, acid and several more. Recently is has been shown that also blue and red light activates SigB in Bacillus subtilis. Methodology/Principal Findings: By qRT-PCR we analyzed the transcriptional response of the pathogen L. monocytogenes to blue and red light in wild type bacteria and in isogenic deletion mutants for the putative blue-light receptor Lmo0799 and the stress sigma factor SigB. It was found that both blue (455 nm) and red (625 nm) light induced the transcription of sigB and SigB-dependent genes, this induction was completely abolished in the SigB mutant. The blue-light effect was largely dependent on Lmo0799, proving that this protein is a genuine blue-light receptor. The deletion of lmo0799 enhanced the red-light effect, the underlying mechanism as well as that of SigB activation by red light remains unknown. Blue light led to an increased transcription of the internalin A/B genes and of bacterial invasiveness for Caco-2 enterocytes. Exposure to blue light also strongly inhibited swimming motility of the bacteria in a Lmo0799- and SigB-dependent manner, red light had no effect there. Conclusions/Significance: Our data established that visible, in particular blue light is an important environmental signal with an impact on gene expression and physiology of the non-phototrophic bacterium L. monocytogenes. In natural environments these effects will result in sometimes random but potentially also cyclic fluctuations of gene activity, depending on the light conditions prevailing in the respective habitat.}, subject = {Listeria monocytogenes}, language = {en} } @article{vonBuerenOehlerShalabyetal.2011, author = {von Bueren, Andr{\´e} O. and Oehler, Christoph and Shalaby, Tarek and von Hoff, Katja and Pruschy, Martin and Seifert, Burkhardt and Gerber, Nicolas U. and Warmuth-Metz, Monika and Stearns, Duncan and Eberhart, Charles G. and Kortmann, Rolf D. and Rutkowski, Stefan and Grotzer, Michael A.}, title = {c-MYC expression sensitizes medulloblastoma cells to radio- and chemotherapy and has no impact on response in medulloblastoma patients}, series = {BMC Cancer}, volume = {11}, journal = {BMC Cancer}, number = {74}, doi = {10.1186/1471-2407-11-74}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-134185}, pages = {1-11}, year = {2011}, abstract = {Background: To study whether and how c-MYC expression determines response to radio-and chemotherapy in childhood medulloblastoma (MB). Methods: We used DAOY and UW228 human MB cells engineered to stably express different levels of c-MYC, and tested whether c-MYC expression has an effect on radio-and chemosensitivity using the colorimetric 3-(4,5-dimethylthiazol- 2-yl)-5-(3-carboxymethoxyphenyl)-2-(4-sulfophenyl)-2H-tetrazolium inner salt (MTS) assay, clonogenic survival, apoptosis assays, cell cycle analysis, and western blot assessment. In an effort to validate our results, we analyzed c-MYC mRNA expression in formalin-fixed paraffin-embedded tumor samples from well-documented patients with postoperative residual tumor and compared c-MYC mRNA expression with response to radio-and chemotherapy as examined by neuroradiological imaging. Results: In DAOY -and to a lesser extent in UW228 -cells expressing high levels of c-MYC, the cytotoxicity of cisplatin, and etoposide was significantly higher when compared with DAOY/UW228 cells expressing low levels of c-MYC. Irradiation-and chemotherapy-induced apoptotic cell death was enhanced in DAOY cells expressing high levels of c-MYC. The response of 62 of 66 residual tumors was evaluable and response to postoperative radio-(14 responders (CR, PR) vs. 5 non-responders (SD, PD)) or chemotherapy (23 CR/PR vs. 20 SD/PD) was assessed. c-MYC mRNA expression was similar in primary MB samples of responders and non-responders (Mann-Whitney U test, p = 0.50, ratio 0.49, 95\% CI 0.008-30.0 and p = 0.67, ratio 1.8, 95\% CI 0.14-23.5, respectively). Conclusions: c-MYC sensitizes MB cells to some anti-cancer treatments in vitro. As we failed to show evidence for such an effect on postoperative residual tumors when analyzed by imaging, additional investigations in xenografts and larger MB cohorts may help to define the exact function of c-MYC in modulating response to treatment.}, language = {en} } @article{FoertschHuppMaetal.2011, author = {F{\"o}rtsch, Christina and Hupp, Sabrina and Ma, Jiangtao and Mitchell, Timothy J. and Maier, Elke and Benz, Roland and Iliev, Asparouh I.}, title = {Changes in Astrocyte Shape Induced by Sublytic Concentrations of the Cholesterol-Dependent Cytolysin Pneumolysin Still Require Pore-Forming Capacity}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-69084}, year = {2011}, abstract = {Streptococcus pneumoniae is a common pathogen that causes various infections, such as sepsis and meningitis. A major pathogenic factor of S. pneumoniae is the cholesterol-dependent cytolysin, pneumolysin. It produces cell lysis at high concentrations and apoptosis at lower concentrations. We have shown that sublytic amounts of pneumolysin induce small GTPase-dependent actin cytoskeleton reorganization and microtubule stabilization in human neuroblastoma cells that are manifested by cell retraction and changes in cell shape. In this study, we utilized a live imaging approach to analyze the role of pneumolysin's pore-forming capacity in the actin-dependent cell shape changes in primary astrocytes. After the initial challenge with the wild-type toxin, a permeabilized cell population was rapidly established within 20-40 minutes. After the initial rapid permeabilization, the size of the permeabilized population remained unchanged and reached a plateau. Thus, we analyzed the non-permeabilized (non-lytic) population, which demonstrated retraction and shape changes that were inhibited by actin depolymerization. Despite the non-lytic nature of pneumolysin treatment, the toxin's lytic capacity remained critical for the initiation of cell shape changes. The non-lytic pneumolysin mutants W433F-pneumolysin and delta6-pneumolysin, which bind the cell membrane with affinities similar to that of the wild-type toxin, were not able to induce shape changes. The initiation of cell shape changes and cell retraction by the wild-type toxin were independent of calcium and sodium influx and membrane depolarization, which are known to occur following cellular challenge and suggested to result from the ion channel-like properties of the pneumolysin pores. Excluding the major pore-related phenomena as the initiation mechanism of cell shape changes, the existence of a more complex relationship between the pore-forming capacity of pneumolysin and the actin cytoskeleton reorganization is suggested.}, subject = {Toxikologie}, language = {en} } @phdthesis{Merkel2011, author = {Merkel, Carla Jennifer}, title = {Characterisation of Mena Promoter Activity and Protein Expression in Wild-type and Gene-trapped Mice}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-70414}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2011}, abstract = {Proteins of the Ena/VASP protein family are important regulators of actin and participate in cell-cell and cell-matrix adhesions. To date, the physiological importance of Ena/VASP proteins for integrity of the cardiovascular system has remained unclear. To study cardiovascular functions of Mena and VASP, we used an established VASP knockout mouse in combination with a novel gene-trap-based model to ablate Mena function. In the mutated Mena mouse, the endogenous Mena gene is disrupted by the insertion of a β-galactosidase construct and β-galactosidase expression is under the control of the endogenous Mena promoter. X-gal staining of mouse organs revealed Mena promoter activity in smooth muscle layers of vessels, intestines and bronchioles, but also in cells of the brain, in cardiomyocytes and in the respiratory epithelium of bronchioles. In wild-type mice, Western blotting revealed differing protein expression patterns of VASP and Mena. Mena expression was observed in almost every tissue, predominantly in heart, lung, stomach, large intestine, testis, brain and eye. Additionally, the neuronalspecific Mena isoform was expressed in brain, eye, and slightly in heart and stomach. VASP protein, in contrast, was predominantly detected in spleen and thrombocytes. In gene-trapped mice, Mena expression was largely reduced in heart, lung and stomach but only slightly decreased in brain and testis. Immunofluorescence microscopy revealed colocalisation of Mena and F-actin at intercalated discs of cardiomyocytes and strong colocalisation of Mena and α- smooth-muscle-actin in vessels and bronchioles. Functional analysis of Mena/VASP-mutated and wild-type mice using electrocardiography suggested that the depletion of either Mena or VASP does not interfere with normal heart function. However, in double-deficient mice, the resting heart rate was significantly increased, probably reflecting a mechanism to compensate defects in ventricle contraction and to maintain a normal cardiac output. In agreement, cardiac catheter investigations suggested dilated cardiomyopathy in doubledeficient mice. Thus, although Western blot analysis showed differing protein expression patterns of Mena and VASP, these findings suggest that Mena and VASP mutually compensate for each other. Concerning Mena, we propose an important role of the protein in vessel walls, cardiomyocytes and bronchioles.}, subject = {Spectrin}, language = {en} }