@article{GoerlSoberatsHerbstetal.2016, author = {G{\"o}rl, Daniel and Soberats, Bartolome and Herbst, Stefanie and Stepanenko, Vladimir and W{\"u}rthner, Frank}, title = {Perylene bisimide hydrogels and lyotropic liquid crystals with temperature-responsive color change}, series = {Chemical Science}, volume = {7}, journal = {Chemical Science}, number = {11}, doi = {10.1039/c6sc02249a}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-162459}, pages = {6786-6790}, year = {2016}, abstract = {The self-assembly of perylene bisimide (PBI) dyes bearing oligo ethylene glycol (OEG) units in water affords responsive functional nanostructures characterized by their lower critical solution temperature (LCST). Tuning of the LCST is realized by a supramolecular approach that relies on two structurally closely related PBI-OEG molecules. The two PBIs socially co-assemble in water and the resulting nanostructures exhibit a single LCST in between the transition temperatures of the aggregates formed by single components. This permits to precisely tune the transition from a hydrogel to a lyotropic liquid crystal state at temperatures between 26 and 51 °C by adjusting the molar fraction of the two PBIs. Owing to concomitant changes in PBI-PBI interactions this phase transition affords a pronounced color change with "fluorescence-on" response that can be utilized as a smart temperature sensory system.}, language = {en} } @article{BecamWalterBurgertetal.2017, author = {Becam, J{\´e}r{\^o}me and Walter, Tim and Burgert, Anne and Schlegel, Jan and Sauer, Markus and Seibel, J{\"u}rgen and Schubert-Unkmeir, Alexandra}, title = {Antibacterial activity of ceramide and ceramide analogs against pathogenic Neisseria}, series = {Scientific Reports}, volume = {7}, journal = {Scientific Reports}, doi = {10.1038/s41598-017-18071-w}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-159367}, pages = {17627}, year = {2017}, abstract = {Certain fatty acids and sphingoid bases found at mucosal surfaces are known to have antibacterial activity and are thought to play a more direct role in innate immunity against bacterial infections. Herein, we analysed the antibacterial activity of sphingolipids, including the sphingoid base sphingosine as well as short-chain C\(_{6}\) and long-chain C\(_{16}\)-ceramides and azido-functionalized ceramide analogs against pathogenic Neisseriae. Determination of the minimal inhibitory concentration (MIC) and minimal bactericidal concentration (MBC) demonstrated that short-chain ceramides and a ω-azido-functionalized C\(_{6}\)-ceramide were active against Neisseria meningitidis and N. gonorrhoeae, whereas they were inactive against Escherichia coli and Staphylococcus aureus. Kinetic assays showed that killing of N. meningitidis occurred within 2 h with ω-azido-C\(_{6}\)-ceramide at 1 X the MIC. Of note, at a bactericidal concentration, ω-azido-C\(_{6}\)-ceramide had no significant toxic effect on host cells. Moreover, lipid uptake and localization was studied by flow cytometry and confocal laser scanning microscopy (CLSM) and revealed a rapid uptake by bacteria within 5 min. CLSM and super-resolution fluorescence imaging by direct stochastic optical reconstruction microscopy demonstrated homogeneous distribution of ceramide analogs in the bacterial membrane. Taken together, these data demonstrate the potent bactericidal activity of sphingosine and synthetic short-chain ceramide analogs against pathogenic Neisseriae.}, language = {en} } @article{WolterAizezersFenneletal.2012, author = {Wolter, Steffen and Aizezers, Janis and Fennel, Franziska and Seidel, Marcus and W{\"u}rthner, Frank and K{\"u}hn, Oliver and Lochbrunner, Stefan}, title = {Size-dependent exciton dynamics in one-dimensional perylene bisimide aggregates}, series = {New Journal of Physics}, volume = {14}, journal = {New Journal of Physics}, number = {105027}, doi = {10.1088/1367-2630/14/10/105027}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-135190}, year = {2012}, abstract = {The size-dependent exciton dynamics of one-dimensional aggregates of substituted perylene bisimides are studied by ultrafast transient absorption spectroscopy and kinetic Monte-Carlo simulations as a function of the excitation density and the temperature in the range of 25-90 degrees C. For low temperatures, the aggregates can be treated as infinite chains and the dynamics is dominated by diffusion-driven exciton-exciton annihilation. With increasing temperature the aggregates dissociate into small fragments consisting of very few monomers. This scenario is also supported by the time-dependent anisotropy deduced from polarization-dependent experiments.}, language = {en} } @unpublished{LambertVoelkerKochetal.2015, author = {Lambert, Christoph and V{\"o}lker, Sebastian F. and Koch, Federico and Schmiedel, Alexander and Holzapfel, Marco and Humeniuk, Alexander and R{\"o}hr, Merle I. S. and Mitric, Roland and Brixner, Tobias}, title = {Energy Transfer Between Squaraine Polymer Sections: From helix to zig-zag and All the Way Back}, series = {Journal of the American Chemical Society}, journal = {Journal of the American Chemical Society}, doi = {10.1021/jacs.5b03644}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-159607}, year = {2015}, abstract = {Joint experimental and theoretical study of the absorption spectra of squaraine polymers in solution provide evidence that two different conformations are present in solution: a helix and a zig-zag structure. This unique situation allows investigating ultrafast energy transfer processes between different structural segments within a single polymer chain in solution. The understanding of the underlying dynamics is of fundamental importance for the development of novel materials for light-harvesting and optoelectronic applications. We combine here femtosecond transient absorption spectroscopy with time-resolved 2D electronic spectroscopy showing that ultrafast energy transfer within the squaraine polymer chains proceeds from initially excited helix segments to zig-zag segments or vice versa, depending on the solvent as well as on the excitation wavenumber. These observations contrast other conjugated polymers such as MEH-PPV where much slower intrachain energy transfer was reported. The reason for the very fast energy transfer in squaraine polymers is most likely a close matching of the density of states between donor and acceptor polymer segments because of very small reorganization energy in these cyanine-like chromophores.}, language = {en} } @phdthesis{Dhara2017, author = {Dhara, Ayan}, title = {Stimuli-Responsive Self-Assembly and Spatial Functionalization of Organic Cages Based on Tribenzotriquinacenes}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-154762}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2017}, abstract = {Within this thesis, synthetic strategies for self-assembled organic cage compounds have been developed that allow for both stimuli-responsive control over assembly/disassembly processes and spatial control over functionalization. To purposefully operate the reversible assembly of organic cages, boron-nitrogen dative bonds have been exploited for the formation of a well-defined, discrete bipyramidal organic assembly in solution. Thermodynamic association equilibria for cage formation have been investigated by Isothermal Titration Calorimetry (ITC). Temperature-dependent NMR studies revealed a reversible cage opening upon heating and quantitative reassembly upon cooling. For the spatial functionalization of organic cages, two divergent molecular building units have been designed and synthesized, namely tribenzotriquinacene derivatives possessing a terminal alkyne moiety at the apical position and a meta-diboronic acid having a pyridyl group at the 2-position. Facile access to a variety of apically functionalized tribenzotriquinacenes has been illustrated by post-synthetic modifications at the terminal alkyne group by Sonogashira cross-coupling and azide-alkyne click reactions. Finally, these apically functionalized tribenzotriquinacene building blocks have been implemented into boronate ester-based organic cage compounds showing modular exohedral functionalities.}, subject = {Selbstorganisation}, language = {en} } @phdthesis{Spenst2017, author = {Spenst, Peter}, title = {Xylylene Bridged Perylene Bisimide Cyclophanes and Macrocycles}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-139015}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2017}, abstract = {This work is concerned with the syntheses and photophysical properties of para-xylylene bridged macrocycles nPBI with ring sizes from two to nine PBI units, as well as the complexation of polycyclic aromatic guest compounds. With a reduced but substantial fluorescence quantum yield of 21\% (in CHCl3) the free host 2PBI(4-tBu)4 can be used as a dual fluorescence probe. Upon encapsulation of rather electron-poor guests the fluorescence quenching interactions between the chromophores are prevented, leading to a significant fluorescence enhancement to > 90\% ("turn-on"). On the other hand, the addition of electron-rich guest molecules induces an electron transfer from the guest to the electron-poor PBI chromophores and thus quenches the fluorescence entirely ("turn-off"). The photophysical properties of the host-guest complexes were studied by transient absorption spectroscopy. These measurements revealed that the charge transfer between guest and 2PBI(4-tBu)4 occurs in the "normal region" of the Marcus-parabola with the fastest charge separation rate for perylene. In contrast, the charge recombination back to the PBI ground state lies far in the "inverted region" of the Marcus-parabola. Beside complexation of planar aromatic hydrocarbons into the cavity of the cyclophanes an encapsulation of fullerene into the cyclic trimer 3PBI(4-tBu)4 was observed. 3PBI(4-tBu)4 provides a tube-like structure in which the PBI subunits represent the walls of those tubes. The cavity has the optimal size for hosting fullerenes, with C70 fitting better than C60 and a binding constant that is higher by a factor of 10. TA spectroscopy in toluene that was performed on the C60@3PBI(4-tBu)4 complex revealed two energy transfer processes. The first one comes from the excited PBI to the fullerene, which subsequently populates the triplet state. From the fullerene triplet state a second energy transfer occurs back to the PBI to generate the PBI triplet state. In all cycles that were studied by TA spectroscopy, symmetry-breaking charge separation (SB-CS) was observed in dichloromethane. This process is fastest within the PBI cyclophane 2PBI(4-tBu)4 and slows down for larger cycles, suggesting that the charge separation takes place through space and not through bonds. The charges then recombine to the PBI triplet state via a radical pair intersystem crossing (RP-ISC) mechanism, which could be used to generate singlet oxygen in yields of ~20\%. By changing the solvent to toluene an intramolecular folding of the even-numbered larger cycles was observed that quenches the fluorescence and increases the 0-1 transition band in the absorption spectra. Force field calculations of 4PBI(4-tBu)4 suggested a folding into pairs of dimers, which explains the remarkable odd-even effect with respect to the number of connected PBI chromophores and the resulting alternation in the absorption and fluorescence properties. Thus, the even-numbered macrocycles can fold in a way that all chromophores are in a paired arrangement, while the odd-numbered cycles have open conformations (3PBI(4-tBu)4, 5PBI(4-tBu)4, 7PBI(4-tBu)4) or at least additional unpaired PBI unit (9PBI(4-tBu)4). With these experiments we could for the first time give insights in the interactions between cyclic PBI hosts and aromatic guest molecules. Associated with the encapsulation of guest molecules a variety of possible applications can be envisioned, like fluorescence sensing, chiral recognition and photodynamic therapy by singlet oxygen generation. Particularly, these macrocycles provide photophysical relaxation pathways of PBIs, like charge separation and recombination and triplet state formation that are hardly feasible in monomeric PBI dyes. Furthermore, diverse compound specific features were found, like the odd-even effect in the folding process or the transition of superficial nanostructures of the tetrameric cycle influenced by the AFM tip. The comprehensive properties of these macrocycles provide the basis for further oncoming studies and can serve as an inspiration for the synthesis of new macrocyclic compounds.}, subject = {Supramolekulare Chemie}, language = {en} } @phdthesis{Liess2017, author = {Liess, Andreas}, title = {Structure-Property Relationships of Merocyanine Dyes in the Solid State: Charge Transport and Exciton Coupling}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-152900}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2017}, abstract = {The present thesis demonstrates the importance of the solid state packing of dipolar merocyanine dyes with regard to charge transport and exciton coupling. Due to the charge transport theory for disordered materials, it is expected that high ground state dipole moments in amorphous thin films lead to low mobility values due to a broadening of the density of states. However, due to their inherent dipolarity, merocyanine dyes usually align in antiparallel dimers in an ordered fashion. The examination of twenty different molecules with ground state dipole moments up to 15.0 D shows that by a high dipolarity and well-defined sterics, the molecules pack in a highly regular two-dimensional brickwork-type structure, which is beneficial for hole transport. Utilization of these molecules for organic thin-film transistors (OTFTs) leads to hole mobility values up to 0.21 cm²/Vs. By fabrication of single crystal field-effect transistors (SCFETs) for the derivative showing the highest mobility values in OTFTs, even hole mobilities up to 2.34 cm²/Vs are achieved. Hence, merocyanine based transistors show hole mobility values comparable to those of conventional p-type organic semiconductors and therefore high ground state dipole moments are not necessarily disadvantageous regarding high mobility applications. By examination of a different series of ten merocyanine dyes with the same chromophore backbone but different donor substituents, it is demonstrated that the size of the donor has a significant influence on the optical properties of thin films. For small and rigid donor substituents, a hypsochromic shift of the absorption compared to the monomer absorption in solution is observed due to the card stack like packing of the molecules in the solid state. By utilization of sterical demanding or flexible donor substituents, a zig-zag type packing is observed, leading to a bathochromical shift of the absorption. These packing motifs and spectral shifts with an offset of 0.93 eV of the H- and J-bands comply with the archetype examples of H- and J-aggregates from Kasha's exciton theory.}, subject = {Exziton}, language = {en} } @phdthesis{ArjonaEsteban2015, author = {Arjona Esteban, Alhama}, title = {Merocyanine Dyes as Organic Semiconductors for Vacuum-processed Solar Cell and Transistor Devices}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-129096}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2015}, abstract = {The present thesis comprises the synthesis of new functional merocyanine dyes, the study of their electro-optical properties as well as solid state packing and their application as p-type semiconductor materials in transistor and solar cell devices. The absorption properties of the obtained compounds could be modified by variation of the donor unit, the introduction of electron-withdrawing substituents in the acceptor unit or elongation of the polymethine chain. For a particular dye, the absorption band could be shifted by more than 160 nm by increasing the solvent polarity due to a conformational switch between a merocyanine-like and a cyanine-like structure. Single crystal analyses revealed that the studied dyes tend to pack either in an antiparallel fashion forming dimers with no overall dipole moment or in a staircase-like pattern where the dipole moments point to the same direction and are only balanced by another staircase oriented in the opposite direction (stair dimer). With respect to application as semiconductor materials, the latter packing arrangement resulted most favorable for charge carrier mobility. We concluded that this packing motif is preserved in the solar cell devices, where the selenium-containing dye afforded the highest performance of this series for an optimized planar-mixed heterojunction solar cell (6.2 \%).}, subject = {Merocyanine}, language = {en} } @phdthesis{Schulze2016, author = {Schulze, Marcus}, title = {Ruthenium Complexes as Water Oxidation Catalysts and Photosensitizers}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-142454}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2016}, abstract = {In der vorliegenden Arbeit werden Aspekte der photokatalytischen Wasseroxidationsreaktion behandelt. Der erste Themenschwerpunkt der Dissertation besch{\"a}ftigt sich mit einem supramolekularen Makrozyklus, der drei Rutheniummetallzentren enth{\"a}lt. Dieser neuartige Katalysator zeigt eine sehr hohe katalytische Aktivit{\"a}t und gew{\"a}hrt neue Einblicke in den Mechanismus der Wasseroxidationsreaktion. Des Weiteren wird auf die mit Licht interagierenden Komponenten der photokatalytischen Wasseroxidation eingegangen. Hierbei haben sich azabenz-anellierte Perylenderivate als vielseitige Farbstoffklasse herausgestellt. Die Kombination dieser Farbstoffe mit Metallkomplexen liefert metallorganische Verbindungen, die als Photosensibilisatoren eingesetzt werden k{\"o}nnen.}, subject = {Farbstoff}, language = {en} } @article{MessiNdjokoIosetHertleinAmslingeretal.2012, author = {Messi, Bernadette Biloa and Ndjoko-Ioset, Karine and Hertlein-Amslinger, Barbara and Lannang, Alain Meli and Nkengfack, Augustin E. and Wolfender, Jean-Luc and Hostettmann, Kurt and Bringmann, Gerhard}, title = {Preussianone, a New Flavanone-Chromone Biflavonoid from Garcinia preussii Engl.}, series = {Molecules}, volume = {17}, journal = {Molecules}, number = {5}, doi = {10.3390/molecules17056114}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-130881}, pages = {6114 - 6125}, year = {2012}, abstract = {A new flavanone-chromone biflavonoid, preussianone (1), has been isolated from the leaves of Garcinia preussii, along with four known biflavonoids. The absolute stereostructures were elucidated by chemical, spectroscopic, and chiroptical methods. The biological properties of the new biflavonoid against several bacterial strains were evaluated.}, language = {en} } @phdthesis{Gershberg2016, author = {Gershberg, Jana}, title = {Self-assembled Perylene Bisimide Dimers and their Interaction with Double-stranded DNA}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-136725}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2016}, abstract = {The self-assembly of molecules based on π-π-interactions and hydrogen bonding is of significant importance in nature. These processes enable the formation of complex supramolecular structures with diverse functions. For the transfer of the concepts from nature to artificial supramolecular structures, a basic understanding of those processes is needed. For this purpose, π-conjugated aromatic molecules with an easy synthetic access are suitable as their functionalities can be changed effortless. Perylene bisimide (PBIs) dyes are attractive candidates since they fulfill these requirements owing to their tendency to self-assemble in solution due to their large aromatic π-surfaces. Furthermore, the changes of the optical properties (for instance absorption, emission or circular dichroism) of PBI dyes, caused by their self-assembly, are easy to study experimentally. Structural variations of PBI dyes including additional non-covalent interactions, such as hydro-gen bonding, enable to direct their self-assembly process. Thus, the formation of interesting su-pramolecular structures of PBI dyes could be realized, although, often of undefined size. The aim of this thesis was to develop strategies to restrict the aggregate size of PBI dyes. Therefore, de-fined structural features of PBI molecules were combined and a variation of external influences such as solvent and concentration included. Furthermore, DNA was utilized as a template for the limitation of the aggregate size of PBI dyes. Chapters 1 and 2 provide general information and describe examples from literature which are necessary to understand the following experimental work. The first chapter is based on the inter-actions of various molecules with DNA. Therefore, DNA is considered as a supramolecular biom-acromolecule containing specific structural and functional features to interact with small mole-cules. Afterwards, the main interaction modes of small molecules with DNA such as electrostatic interaction, intercalation and groove binding with corresponding examples are discussed. Among all techniques applied to study the interaction of ligands with DNA, UV/Vis absorption, fluores-cence and circular dichroism spectroscopy were described in detail. At the end of this chapter, examples of already pre-associated systems showing interactions with DNA are presented. The second chapter is focused on the determination and mathematic evaluation of the self-assembly processes. The simplest models such as monomer-dimer and isodesmic model are de-scribed and supplemented by examples. Furthermore, the simplest modification of the isodesmic model, the K2-K model, is presented. Additionally, experimental problems, which may arise dur-ing the investigations of the self-assembly processes, are addressed. For the description of the entire self-assembly process, a sufficiently large concentration range and an appropriate measure-ment method that is sensitive in this concentration range is necessary. Furthermore, the full transi-tion from the monomeric to the aggregated species has to be spectroscopically ascertainable. This enables an accurate mathematic evaluation of the self-assembly process and provides meaningful binding constants. The self-assembly pathway can be controlled by the variation of solvent, con-centration or temperature. However, this pathway can also be directed by a rational design of the molecular structure of the considered system. For example, a specific interplay of π-π-interactions and hydrogen bonding may promote isodesmic as well as cooperative growth into large struc-tures. The main focus of this thesis is to develop strategies to control the aggregate size of PBI dyes (Chapter 3). For this purpose, a PBI scaffold was designed which contains hydrogen bonding amide functions at the imide positions derived from the amino acid L-alanine and solubilizing side groups in the periphery (Figure 81). The variations of the residues R/R' range from didodecylox-yphenyl, didodecylphenyl, dioligo(ethylene glycol)phenyl to branched and linear alkyl chains. The most extensive study of the aggregation behavior was performed for the PBI dye 5. Concen-tration-dependent 1H NMR and UV/Vis absorption measurements clearly revealed the formation of dimers in chloroform. Further investigations by means of 2D NMR, VPO and ITC confirmed the exclusive presence of dimer aggregates of PBI 5 in the investigated concentration range. Mo-lecular modelling studies, supported by NMR and FT-IR experiments, provided structural reasons for the absence of further growth into larger aggregates. The specific combination of π-π interac-tions and hydrogen bonds between the NH groups of the amide groups and the carbonyl oxygen atoms of the PBI core are decisive for the formation of the discrete dimer stack (see Figure 82). The investigations of the aggregation behavior of PBIs 6-9 were less extensive but consistent with the results obtained for PBI 5. However, the determined binding constants vary over a considera-ble range of 1.1 x 102 M-1 (PBI 8) to 1.4 x 104 M-1 (PBI 5). These differences could be attributed to structural variations of the dyes. The electron-rich phenyl substituent promoted the aggregation tendency of PBIs 5-7 compared with 8 and 9 that carry only alkyl side chains. Thus, the π-π in-teractions of bay-unsubstituted PBI cores in combination with hydrogen bonding of the amide functions control the formation of discrete dimers of these PBI dyes. The variation of conditions, such as solvent, change the aggregation behavior of PBI dyes. In the solvents toluene and/or methylcyclohexane, anti-cooperative growth into larger aggregates of PBI 5 was observed (Chapter 4). The important feature of this self-assembly process is the absence of isosbestic points over the whole concentration range in the UV/Vis absorption measurements. The preference for the dimeric species of PBI 5 remained in both solvents as well as in mixtures of them, but upon increasing the concentration these dimers self-assemble into larger aggregates. An important feature of the self-assembly process is the preferred formation of even-numbered aggregates compared to the odd-numbered ones (see Figure 83). Although, the conventional K2-K model provides plausible binding constants, it is not capable to describe the aggregation behavior adequately, since it considers a continuous size distribution. The gradual aggregation process over dimers, tetramers, hexamers, etc. was therefore analyzed with a newly developed K2-K model for anti-cooperative supramolecular polymerization. By the global analysis of the UV/Vis absorption spectra a very good agreement between the experimental and simulated spectra, which were based on the new K2-K model, was obtained. Furthermore, the calculated UV/Vis absorption spectra of a dimer and an aggregate highlighted the most important structural differences. The absorption spectrum of the dimer still has a pronounced vibronic structure which gets lost in the spectrum of the aggregate. In another part of this work, a series of water soluble PBI dyes were described which contain similar PBI scaffolds as PBIs 5-8 (Chapter 5). These PBI dyes self-assemble into similar dimer aggregates in water due to their positively charged side chains causing electrostatic repulsion be-tween the molecules (see Figure 84). Here, however, the self-assembly behavior has not been studied thoroughly in water due to the similarities of already reported PBI dyes. Instead, the focus here is on the characterization of the interactions of these dyes with DNA/RNA. The comprehensive studies using thermal denaturation experiments showed the high stability of these PBI/polynucleotide complexes. The spermine-functionalized PBI dyes having six positive charges showed strong interactions with DNA/RNA which was expressed in a signif-icant increase of the melting temperatures of DNA/RNA (ΔTm values between 7 and > 35 ° C). The dioxa analogues containing only two positive charges had lower enhancement of the melting temperature of DNA/RNA (ΔTm values between 3 and 30 ° C). A similar trend has been observed in the fluorimetric titrations. The spermine-functionalized PBI dyes showed high binding con-stants (log Ks = 9.2 - 9.8), independently of the used polynucleotides. In contrast, the dioxa ana-logues displayed smaller binding constants (log Ks = 6.5 - 7.9) without any correlation between binding affinity and binding strength of the PBI dyes and the applied polynucleotides. The CD-spectroscopic measurements revealed significant differences in the binding properties of the dyes with DNA/RNA. They were dependent on the steric hindrance of the amino acid residues at the imide position and their configuration on one side and the grooves properties of ds-DNA/RNA on the other side. The spectroscopic results confirmed the formation of excitonically coupled PBI dimers in the minor groove of ds-DNA and the major groove of ds-RNA. Depending on the se-quence, the grooves of the polynucleotides provide different amount of space for embedding molecules. The guanine amino groups protrude into the minor groove of the polynucleotide poly(dG-dC)2 increasing the steric hindrance, which is not the case for poly(dA-dT)2. Molecular modeling studies showed that the PBI dimers penetrate deeper into the groove of poly(dA-dT)2 due to the absence of the steric hindrance, in comparison to the groove of poly(dG-dC)2 (see Figure 85).}, subject = {Perylentetracarbons{\"a}urederivate}, language = {en} } @phdthesis{Ceymann2016, author = {Ceymann, Harald}, title = {Synthesis and Optical Spectroscopic Properties of Squaraine Superchromophores}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-136850}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2016}, abstract = {In this work the successful synthesis, the linear and nonlinear spectroscopic properties as well as the electrochemical behaviour of some linear and star-shaped squaraine superchromophores that are based on indolenine derivatives were presented. The attempt to synthesise similar chromophores which contained only benzothiazole squaraines failed unfortunately. However, one trimer that contained mixed benzothiazole indolenine squaraines could be synthesised and investigated as well. The linear spectroscopic properties, like red-shift and broadening of the absorption, of all superchromophores could be explained by exciton coupling theory. The heterochromophores (SQA)2(SQB)-N, (SQA)(SQB)2-N and (SQA)(SQB)-NH displayed additional to the typical squaraine fluorescence from the lowest excited state some properties that could be assigned to localised states. While the chromophores with N-core showed very small emission quantum yields, the chromophores with the other cores and the linear oligomers display an enhancement compared to the monomers. Transient absorption spectroscopy experiments of the star-shaped superchromophores showed, that their formally degenerated S1 states are split due to a deviation of the ideal C3 symmetry. This is also the reason for the observation of an absorption band for the highest exciton state, which is derived from the S1-state of the monomers, as its transition-dipole moment would be zero in the symmetrical case. The linear oligomers and the star-shaped superchromophores with a benzene or triarylamine core showed at least additive, sometimes even weak cooperative, behaviour in the two-photon absorption experiments. Additional to higher two-photon absorption cross sections the chromophores showed a pronounced broadening of the nonlinear absorption, due to symmetry breaking and a higher density of states. Unfortunately it was not possible to solve the problem of the equilibrium of the cisoid and the transoid structure of donor substituted azulene squaraines, due to either instability of the squaraines or steric hindrance.}, subject = {Squaraine}, language = {en} } @phdthesis{BertleffZieschang2014, author = {Bertleff-Zieschang, Nadja Luisa}, title = {Galectin-1: A Synthetic and Biological Study of a Tumor Target}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-101529}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2014}, abstract = {Galectin-1 (hGal-1) is overexpressed by numerous cancer types and previously conducted studies confirmed that the β-galactoside-binding protein mediates various molecular interactions associated with tumor growth, spread and survival. Upon interaction with carbohydrate-based binding epitopes of glycan structures on human cell surfaces galectin-1 induces proliferative, angiogenetic and migratory signals and modulates negative T cell regulation which essentially helps the tumor to evade the immune response. These findings attributed galectin-1 a pivotal role in tumor physiology and strongly suggest the protein as target for diagnostic and therapeutic applications. Within the scope of this work a strategy was elaborated for designing tailor-made galectin-1 ligands by functionalizing selected hydroxyl groups of the natural binding partner N-acetyllactosamine (LacNAc) that are not involved in the sophisticated interplay between the disaccharide and the protein. Synthetic modifications intended to introduce chemical groups i) to address a potential binding site adjacent to the carbohydrate recognition domain (CRD) with extended hGal-1-ligand interactions, ii) to implement a tracer isotope for diagnostic detection and iii) to install a linker unit for immobilization on microarrays. Resulting structures were investigated regarding their targeting ability towards galectin-1 by cocrystallization experiments, SPR and ITC studies. Potent binders were further probed for their diagnostic potential to trace elevated galectin-1 levels in microarray experiments and for an application in positron emission tomography (PET).}, subject = {Organische Synthese}, language = {en} } @article{JansenOhlendorfErhardetal.2013, author = {Jansen, Nils and Ohlendorf, Birgit and Erhard, Arlette and Bruhn, Torsten and Bringmann, Gerhard and Imhoff, Johannes F.}, title = {Helicusin E, Isochromophilone X and Isochromophilone XI: New Chloroazaphilones Produced by the Fungus Bartalinia robillardoides Strain LF550}, series = {Marine Drugs}, volume = {11}, journal = {Marine Drugs}, number = {3}, doi = {10.3390/md11030800}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-129649}, pages = {800-816}, year = {2013}, abstract = {Microbial studies of the Mediterranean sponge Tethya aurantium led to the isolation of the fungus Bartalinia robillardoides strain LF550. The strain produced a number of secondary metabolites belonging to the chloroazaphilones. This is the first report on the isolation of chloroazaphilones of a fungal strain belonging to the genus Bartalinia. Besides some known compounds (helicusin A (1) and deacetylsclerotiorin (2)), three new chloroazaphilones (helicusin E (3); isochromophilone X (4) and isochromophilone XI (5)) and one new pentaketide (bartanolide (6)) were isolated. The structure elucidations were based on spectroscopic analyses. All isolated compounds revealed different biological activity spectra against a test panel of four bacteria: three fungi; two tumor cell lines and two enzymes.}, language = {en} } @article{RestMayoralFernandez2013, author = {Rest, Christina and Mayoral, Mar{\´i}a Jos{\´e} and Fern{\´a}ndez, Gustavo}, title = {Aqueous Self-Sorting in Extended Supramolecular Aggregates}, series = {International Journal of Molecular Sciences}, volume = {14}, journal = {International Journal of Molecular Sciences}, number = {1}, doi = {10.3390/ijms14011541}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-129435}, pages = {1541-1565}, year = {2013}, abstract = {Self-organization and self-sorting processes are responsible for the regulation and control of the vast majority of biological processes that eventually sustain life on our planet. Attempts to unveil the complexity of these systems have been devoted to the investigation of the binding processes between artificial molecules, complexes or aggregates within multicomponent mixtures, which has facilitated the emergence of the field of self-sorting in the last decade. Since, artificial systems involving discrete supramolecular structures, extended supramolecular aggregates or gel-phase materials in organic solvents or—to a lesser extent—in water have been investigated. In this review, we have collected diverse strategies employed in recent years to construct extended supramolecular aggregates in water upon self-sorting of small synthetic molecules. We have made particular emphasis on co-assembly processes in binary mixtures leading to supramolecular structures of remarkable complexity and the influence of different external variables such as solvent and concentration to direct recognition or discrimination processes between these species. The comprehension of such recognition phenomena will be crucial for the organization and evolution of complex matter.}, language = {en} } @phdthesis{Rest2015, author = {Rest, Christina}, title = {Self-assembly of amphiphilic oligo(phenylene ethynylene)-based (bi)pyridine ligands and their Pt(II) and Pd(II) complexes}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-133248}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2015}, abstract = {The presented work in the field of supramolecular chemistry describes the synthesis and detailed investigation of (bi)pyridine-based oligo(phenylene ethynylene) (OPE) amphiphiles, decorated with terminal glycol chains. The metal-ligating property of these molecules could be exploited to coordinate to Pd(II) and Pt(II) metal ions, respectively, resulting in the creation of novel metallosupramolecular π-amphiphiles of square-planar geometry. The focus of the presented studies is on the self-assembly behaviour of the OPE ligands and their corresponding metal complexes in polar and aqueous environment. In this way, the underlying aggregation mechanism (isodesmic or cooperative) is revealed and the influence of various factors on the self-assembly process in supramolecular systems is elucidated. In this regard, the effect of the molecular design of the ligand, the coordination to a metal centre as well as the surrounding medium, the pH value and temperature is investigated.}, subject = {Supramolekulare Chemie}, language = {en} } @phdthesis{Fimmel2015, author = {Fimmel, Benjamin}, title = {Perylene Bisimide Foldamers: Synthesis and In-Depth Studies of the Ground- and Excited States Properties}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-125173}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2015}, abstract = {In this thesis the syntheses and detailed investigations on two foldable PBI systems were presented. The reversible, solvent-dependet folding/unfolding-behavior was used to study the ground and excited states properties of folda-dimer and folda-trimer by means of different spectroscopic methods as well as theoretical studies. The switching between charge transfer or excimer formation pathways of photoexcited molecules influenced by the spatial arrangement of chromophores within defined dye systems illustrates the impact of conformational preferences on functional properties.}, subject = {Perylenbisdicarboximide }, language = {en} } @phdthesis{Rehm2015, author = {Rehm, Stefanie}, title = {Spermine-functionalized Perylene Bisimide Dyes: Synthesis and Self-assembly in Water}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-123201}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2015}, abstract = {The main objective of this thesis was the design and synthesis of perylene bisimide dyes with sufficient water-solubility for the construction of self-assembled architectures in aqueous solutions. Beside these tasks another goal of this project was the control over the self-assembly process in terms of aggregate size and helicity, respectively. Within this thesis an appropriate synthesis for spermine-functionalized perylene bisimide dyes was developed and conducted successfully. The characterization of these building blocks and their course of self-assembly were investigated by NMR, UV/Vis and fluorescence spectroscopy as well as by atomic force and transmission electron microscopy. For the better understanding of the experimental results theoretical calculations were performed.}, subject = {Perylenderivate}, language = {en} } @article{WangLiKateleetal.2014, author = {Wang, Hui and Li, Min-Yi and Katele, F{\´e}lix Zongwe and Satyanandamurty, Tirumani and Wu, Jun and Bringmann, Gerhard}, title = {Decandrinin, an unprecedented \(C_9\)-spiro-fused 7,8-\( seco-ent\)-abietane from the Godavari mangrove \(Ceriops\ decandra\)}, series = {Beilstein Journal of Organic Chemistry}, volume = {10}, journal = {Beilstein Journal of Organic Chemistry}, issn = {1860-5397}, doi = {10.3762/bjoc.10.23}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-119983}, pages = {276-81}, year = {2014}, abstract = {Decandrinin (1), an unprecedented \(C_9\)-spiro-fused 7,8-\(seco-ent\)-abietane, was obtained from the bark of an Indian mangrove, \(Ceriops\ decandra\), collected in the estuary of Godavari, Andhra Pradesh. The constitution and the relative configuration of 1 were determined by HRMS (ESI) and extensive NMR investigations, and the absolute configuration by circular dichroism (CD) and optical-rotatory dispersion (ORD) spectroscopy in combination with quantum-chemical calculations. Decandrinin is the first 7,8-\(seco-ent\)-abietane.}, language = {en} } @phdthesis{Klein2015, author = {Klein, Johannes Hubert}, title = {Electron Transfer and Spin Chemistry in Iridium-Dipyrrin Dyads and Triads}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-118726}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2015}, abstract = {The successful synthesis of a family of donor-iridium complex-acceptor triads (T1-T6, pMV1 and mMV1) and their electrochemical and photophysical properties were presented in this work. Triarylamines (TAA) were used as donors and naphthalene diimide (NDI) as acceptor. A bis-cyclometalated phenylpyrazole iridium dipyrrin complex acts as a photosensitiser. In addition, a molecular structure of T1 was obtained by single crystal X-ray diffraction. Transient absorption spectroscopy experiments of these triads resembled that upon excitation a photoinduced electron transfer efficiently generates long-lived, charge-separated (CS) states. Thereby, the electron-transfer mechanism depends on the excitation energy. The presence of singlet and triplet CS states was clarified by magnetic-field dependent transient-absorption spectroscopy in the nanosecond time regime. It was demonstrated that the magnetic field effect of charge-recombination kinetics showed for the first time a transition from the coherent to the incoherent spin-flip regime. The lifetime of the CS states could be drastically prolonged by varying the spacer between the iridium complex and the NDI unit by using a biphenyl instead of a phenylene unit in T4. A mixed-valence (MV) state of two TAA donors linked to an iridium metal centre were generated upon photoexcitation of triad pMV1 and mMV1. The mixed-valence character in these triads was proven by the analysis of an intervalence charge-transfer (IV-CT) band in the (near-infrared) NIR spectral region by femtosecond pump-probe experiments. These findings were supported by TD-DFT calculations. The synthesis of dyads (D1-D4) was performed. Thereby the dipyrrin ligand was substituted with electron withdrawing groups. The electrochemical and photophysical characterisation revealed that in one case (D4) it was possible to generate a CS state upon photoexcitation.}, subject = {Elektronentransfer}, language = {en} } @article{KunzLabesWieseetal.2014, author = {Kunz, Anna Lena and Labes, Antje and Wiese, Jutta and Bruhn, Torsten and Bringmann, Gerhard and Imhoff, Johannes F.}, title = {Nature's Lab for Derivatization: New and Revised Structures of a Variety of Streptophenazines Produced by a Sponge-Derived Streptomyces Strain}, series = {Marine Drugs}, volume = {12}, journal = {Marine Drugs}, number = {4}, issn = {1660-3397}, doi = {10.3390/md12041699}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-116816}, pages = {1699-1714}, year = {2014}, abstract = {Eight streptophenazines (A-H) have been identified so far as products of Streptomyces strain HB202, which was isolated from the sponge Halichondria panicea from the Baltic Sea. The variation of bioactivities based on small structural changes initiated further studies on new derivatives. Three new streptophenazines (I-K) were identified after fermentation in the present study. In addition, revised molecular structures of streptophenazines C, D, F and H are proposed. Streptophenazines G and K exhibited moderate antibacterial activity against the facultative pathogenic bacterium Staphylococcus epidermidis and against Bacillus subtilis. All tested compounds (streptophenazines G, I-K) also showed moderate activities against PDE 4B.}, language = {en} } @phdthesis{Steeger2015, author = {Steeger, Markus}, title = {Energy and Charge Transfer in Donor-Acceptor Substituted Hexaarylbenzenes}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-112520}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2015}, abstract = {The focus of this work was the investigation of energy transfer between charge transfer states. For this purpose the multidimensional chromophores HAB-S, HAB-A, B1 and B2 were synthesised, each consisting of three electron donor and three electron acceptor redox centres linked symmetrically or asymmetrically by the hexaarylbenzene framework. Triarylamines represent in all these compounds the electron donors, whereas the electron poor centres were triarylboranes in B1 and B2 and PCTM centres in HAB-S and HAB-A, respectively. The hexaarylbenzenes were obtained by cobalt catalysed cyclotrimerisation of the respective tolan precursors. In addition, Star was synthesised, which consists of a central PCTM linked to three triarylamin centres by tolan bridging units in a star-like configuration. The hexaarylbenzene S1a/b substituted with six squaraine chromophores could not be realised. It is assumed that the cyclotrimerisation catalyst Co2(CO)8 does not tolerate the essential hydroxyl groups in the tolan precursor S2a. The alternative reaction pathway to execute the cyclotrimerisation reaction first and introduce the hydroxyl groups thereafter failed as well, because the required hexaarylbenzene substituted by six semisquaric acid moieties could not be synthesised. However, energy transfer interactions could be investigated in the tolan precursor S2a with two squaraine units to obtain information about the electronic coupling provided by the tolan bridge. For all multidimensional compounds model molecules were synthesised with only a single donor-acceptor pair (B3, Star-Model and HAB-Model). This allows a separate consideration of energy and charge transfer processes. It has to be stressed that in all before mentioned multidimensional compounds the "through bond" energy transfer interaction between neighbouring IV-CT states is identical to a transfer of a single electron between two redox centres of the same kind (e.g. TAA -> TAA+). The latter can be analysed by electron transfer theory. This situation is observed when the two IV-CT states transferring energy share one redox centre. All compounds containing PCTM centres were characterised by paramagnetic resonance spectroscopy. Thereby, a weak interaction between the three PCTM units in HAB-S and HAB-A was observed. In addition, when oxidising Star-Model, a strongly interacting singlet or triplet state was obtained. In contrast, signals corresponding to a weakly interacting biradical were obtained for HAB-Model+. This indicates a strong electronic coupling between the redox centres provided by the tolan bridge and a weak coupling when linked by the hexaarylbenzene. This trend is supported by UV/Vis/NIR absorption measurements. The analysis of the observed IV-CT absorption bands by electron transfer theory reveals a weak electronic coupling of V = 340 cm-1 in HAB-Model and a distinctly stronger coupling of V = 1190-2900 cm-1 in Star-Model. In the oxidised HAB-S+, Star+ and Star-Model+ a charge transfer reversed from that of the neutral species, that is, from the PCTM radical to the electron poorer cationic TAA centre, was observed by spectroelectrochemistry. The temporal evolution of the excited states was monitored by ultrafast transient absorption measurements. Within the first picosecond stabilisation of the charge transfer state was observed, induced by solvent rotation. Anisotropic transient absorption measurements revealed that within the lifetime of the excited state (tau = 1-4 ps) energy transfer does not occur in the HABs whereas in the star-like system ultrafast and possibly coherent energy redistribution is observed. Taken this information together the identity between energy transfer and electron transfer in the specific systems were made apparent. It has to be remarked that neither energy transfer nor charge transfer theory can account for the very fast energy transfer in Star. The electrochemical and photophysical properties of B1 and B2 were investigated by cyclic voltammetry, absorption and fluorescence measurements and were compared to B3 with only one neighbouring donor-acceptor pair. For the asymmetric B2 CV measurements show three oxidations as well as three reduction peaks whose peak separation is greatly influenced by the conducting salt due to ion-pairing and shielding effects. Consequently, peak separations cannot be interpreted in terms of electronic couplings in the generated mixed valence species. Transient absorption, fluorescence solvatochromism and absorption spectra show that charge transfer states from the amine to the boron centres are generated after optical excitation. The electronic donor-acceptor interaction is weak though as the charge transfer has to occur predominantly through space. The electronic coupling could not be quantified as the CT absorption band is superimposed by pi-pi* transitions localised at the amine and borane centres. However, this trend is in good agreement to the weak coupling measured for HAB-Model. Both transient absorption and fluorescence upconversion measurements indicate an ultrafast stabilisation of the charge transfer state in B1- B3 similar to the corresponding observations in HAB-S and Star. Moreover, the excitation energy of the localised excited charge transfer states can be redistributed between the aryl substituents of these multidimensional chromophores within fluorescence lifetime (ca. 60 ns). This was proved by steady state fluorescence anisotropy measurements, which further indicate a symmetry breaking in the superficially symmetric HAB. Anisotropic fluorescence upconversion measurements confirm this finding and reveal a time constant of tau = 2-3 ps for the energy transfer in B1 and B2. It has to be stressed that, although the geometric structures of B1 and HAB-S are both based on the same framework and furthermore the neighbouring CT states show in both cases similar Coulomb couplings and negligible "through bond" couplings, very fast energy transfer is observed in B1 whereas in HAB-S the energy is not redistributed within the excited state lifetime. To explain this, it has to be kept in mind that the energy transfer and the relaxation of the CT state are competing processes. The latter is influenced moreover by the solvent viscosity. Hence, it is assumed that this discrepancy in energy transfer behaviour is caused by monitoring the excited state in solvents of varying viscosity. Adding fluoride ions causes the boron centres to lose their acceptor ability due to complexation. Consequently, the charge transfer character in the donor-acceptor chromophores vanishes which could be observed in both the absorption and fluorescence spectra. However, the fluoride sensor ability of the boron centre is influenced strongly by the moisture content of the solvent possibly due to hydrogen bonding of water to the fluoride anions. UV/Vis/NIR absorption measurements of S2a show a red-shift by 1800 cm-1 of the characteristic squarain band compared to the model compound S20. From exciton theory a Coulomb coupling of V = 410 cm-1 is calculated which cannot account for this strong spectral shift. Consequently, "through-bond" interactions have to contribute to the strong communication between the two squaraine chromophores in S2a. This is in accordance with the strong charge transfer coupling calculated for the tolan spacer in Star-Model.}, subject = {Energietransfer }, language = {en} } @article{EpeHaeringRamaiahetal.1993, author = {Epe, Bernd and H{\"a}ring, Martin and Ramaiah, Danaboyina and Stopper, Helga and Abou-Elzahab, Mohamed M. and Adam, Waldemar and Saha-M{\"o}ller, Chantu R.}, title = {DNA damage induced by furocoumarin hydroperoxides plus UV (360 nm)}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-86870}, year = {1993}, abstract = {Wben irradiated at 360 nm, furocoumarins with a hydroperoxide group in a side chain effciently give rise to a type of DNA damage that can best be explained by a photoinduced generation of hydroxyl radicals from the excited pbotosensitizers. The observed DNA damage profiles, i.e. the ratios of single-strand breaks, sites of base loss (AP sites) and base modifications sensitive to fonnamidopyrimidine-DNA glycosylase (FPG protein) and endonuclease m, are similar to the DNA damage profile produced by hydroxyl radicals generated by lonizing radiation or by xanthine and xanthine oxidase in the presence of Fe(III)-EDTA. No such damage is observed with the corresponding furocoumarin alcohols or in the absence of near-UV radiation. The damage caused by the photo-excited hydroperoxides is not influenced by superoxide dismutase (SOD) or catalase or by D2O as solvent. The presence of t-butanol, however, reduces both the formation of single-strand breaks and of base odifications sensitive to FPG protein. The cytotoxicity caused by one of the hydroperoxides in L5178Y mome lymphoma cells is found to be dependent on the near-UV irradiation and to be much higher than that of the corresponding alcohol. Therefore the new type of photoinduced damage occurs inside cells. Intercalating photosensitizers with an attached hydroperoxide group might represent a novel and versatile class of DNA damaging agents, e.g. for phototherapy.}, subject = {DNS-Sch{\"a}digung}, language = {en} } @article{BrixnerKochKullmannetal.2013, author = {Brixner, Tobias and Koch, Federico and Kullmann, Martin and Selig, Ulrike and Nuernberger, Patrick and G{\"o}tz, Daniel C. G. and Bringmann, Gerhard}, title = {Coherent two-dimensional electronic spectroscopy in the Soret band of a chiral porphyrin dimer}, series = {New Journal of Physics}, journal = {New Journal of Physics}, doi = {10.1088/1367-2630/15/2/025006}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-96139}, year = {2013}, abstract = {Using coherent two-dimensional (2D) electronic spectroscopy in fully noncollinear geometry, we observe the excitonic coupling of β,β'-linked bis[tetraphenylporphyrinato-zinc(II)] on an ultrafast timescale in the excited state. The results for two states in the Soret band originating from an excitonic splitting are explained by population transfer with approximately 100 fs from the energetically higher to the lower excitonic state. This interpretation is consistent with exemplary calculations of 2D spectra for a model four-level system with coupling.}, language = {en} } @phdthesis{Shao2012, author = {Shao, Changzhun}, title = {Programming Self-assembly: Formation of Discrete Perylene Bisimide Aggregates}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-69298}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2012}, abstract = {The objective of this thesis focuses on the development of strategies for precise control of perylene bisimide (PBI) self-assembly and the in-depth elucidation of structural and optical features of discrete PBI aggregates by means of NMR and UV/Vis spectroscopy. The strategy for discrete dimer formation of PBIs is based on delicate steric control that distinguishes the two facets of the central perylene surface. The strategy applied in this thesis for accessing discrete PBI quadruple and further oligomeric stacks relies on backbone-directed PBI self-assembly. For this purpose, two tweezer-like PBI dyads bearing the respective rigid backbones, diphenylacetylene (DPA) and diphenylbutydiyne (DPB), were synthesized. The distinct aggregation behavior of these structurally similar PBI dyads can be ascribed to the intramolecular distance between the two PBI chromophores imparted by the DPA and DPB spacers.}, subject = {Farbstoff}, language = {en} } @phdthesis{Duerrbeck2013, author = {D{\"u}rrbeck, Nina}, title = {Photoinduced Charge-Transfer Processes in Redox Cascades based on Triarylamine Donors and the Perchlorinated Triphenylmethyl Radical Acceptor}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-90078}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2013}, abstract = {In this work, a series of redox cascades was synthesised and investigated in view of their photophysical and electrochemical properties. The cascades are based on a perchlorinated triphenylmethyl radical acceptor and two triarylamine donors. Absorption spectra showed the presence of charge-transfer bands in the NIR range of the spectra, which pointed to the population of a charge-transfer state between a triarylamine donor and the radical acceptor. A weak to moderate emission in the NIR range of the spectra was observed for all compounds in cyclohexane. Spectroelectrochemical measurements were used to investigate the characteristic spectral features of the oxidised and reduced species of all compounds. Transient absorption spectra in the ns- and fs-time regime revealed an additional hole transfer in the cascades between the triarylamine donors, resulting in a charge-separated state. Charge-separation and -recombination processes were found to be located in the ps-time regime.}, subject = {Ladungstransfer}, language = {en} } @phdthesis{Gsaenger2013, author = {Gs{\"a}nger, Marcel}, title = {Organic Thin-Film Transistors Based on Dipolar Squaraine Dyes}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-80588}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2013}, abstract = {In summary, it can be stated that the herein studied set of acceptor-substituted squaraine dyes can be seen as potent candidates for OTFTs. Furthermore, their transistor performance can be easily tuned to obtain hole mobilities up to 0.45 cm2/Vs from solution and 1.3 cm2/Vs from sublimation by choosing adequate deposition techniques. In the end, a probable structural model derived from studies of the thin-film morphology by methods such as optical spectroscopy, AFM and X-ray even facilitated the clarification of the observed charge transport behavior.}, subject = {Organische Chemie}, language = {en} } @phdthesis{Paasche2013, author = {Paasche, Alexander}, title = {Mechanistic Insights into SARS Coronavirus Main Protease by Computational Chemistry Methods}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-79029}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2013}, abstract = {The SARS virus is the etiological agent of the severe acute respiratory syndrome, a deadly disease that caused more than 700 causalities in 2003. One of its viral proteins, the SARS coronavirus main protease, is considered as a potential drug target and represents an important model system for other coronaviruses. Despite extensive knowledge about this enzyme, it still lacks an effective anti-viral drug. Furthermore, it possesses some unusual features related to its active-site region. This work gives atomistic insights into the SARS coronavirus main protease and tries to reveal mechanistic aspects that control catalysis and inhibition. Thereby, it applies state-of-the-art computational methods to develop models for this enzyme that are capable to reproduce and interpreting the experimental observations. The theoretical investigations are elaborated over four main fields that assess the accuracy of the used methods, and employ them to understand the function of the active-site region, the inhibition mechanism, and the ligand binding. The testing of different quantum chemical methods reveals that their performance depends partly on the employed model. This can be a gas phase description, a continuum solvent model, or a hybrid QM/MM approach. The latter represents the preferred method for the atomistic modeling of biochemical reactions. A benchmarking uncovers some serious problems for semi-empirical methods when applied in proton transfer reactions. To understand substrate cleavage and inhibition of SARS coronavirus main protease, proton transfer reactions between the Cys/His catalytic dyad are calculated. Results show that the switching between neutral and zwitterionic state plays a central role for both mechanisms. It is demonstrated that this electrostatic trigger is remarkably influenced by substrate binding. Whereas the occupation of the active-site by the substrate leads to a fostered zwitterion formation, the inhibitor binding does not mimic this effect for the employed example. The underlying reason is related to the coverage of the active-site by the ligand, which gives new implications for rational improvements of inhibitors. More detailed insights into reversible and irreversible inhibition are derived from in silico screenings for the class of Michael acceptors that follow a conjugated addition reaction. From the comparison of several substitution patterns it becomes obvious that different inhibitor warheads follow different mechanisms. Nevertheless, the initial formation of a zwitterionic catalytic dyad is found as a common precondition for all inhibition reactions. Finally, non-covalent inhibitor binding is investigated for the case of SARS coranavirus main protease in complex with the inhibitor TS174. A novel workflow is developed that includes an interplay between theory and experiment in terms of molecular dynamic simulation, tabu search, and X-ray structure refinement. The results show that inhibitor binding is possible for multiple poses and stereoisomers of TS174.}, subject = {SARS}, language = {en} } @article{HomannTimmSeibel2012, author = {Homann, Arne and Timm, Malte and Seibel, J{\"u}rgen}, title = {Chemo-enzymatic synthesis and in vitro cytokine profiling of tailor-made oligofructosides}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-76393}, year = {2012}, abstract = {Background It is well known that carbohydrates play fundamental roles in cell signaling and infection processes as well as tumor formation and progression. However, the interaction pathways and cellular receptors targeted by carbohydrates and glycoconjugates remain poorly examined and understood. This lack of research stems, at least to a major part, from accessibility problems of large, branched oligosaccharides. Results To test glycan - cell interactions in vitro, a variety of tailored oligosaccharides was synthesized chemo-enzymatically. Glycosyltransferases from the GRAS organisms Bacillus megaterium (SacB) and Aspergillus niger (Suc1) were used in this study. Substrate engineering of these glycosyltransferases generally acting on sucrose leads to the controlled formation of novel tailored di-, tri- and tetrasaccharides. Already industrially used as prebiotics in functional food, the immunogenic potential of novel oligosaccharides was characterized in this study. A differential secretion of CXCL8 and CCL2 was observed upon oligosaccharide co-cultivation with colorectal epithelial Caco-2 cells. Conclusion Pure carbohydrates are able to stimulate a cytokine response in human endothelial cells in vitro. The type and amount of cytokine secretion depends on the type of co-cultivated oligosaccharide.}, subject = {Chemie}, language = {en} } @phdthesis{Ojala2012, author = {Ojala, Antti}, title = {Merocyanine Dyes as Donor Materials in Vacuum-Deposited Organic Solar Cells: Insights into Structure-Property-Performance Relationships}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-70073}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2012}, abstract = {In this study, a double-donor concept is used to improve the performance of thermally evaporated merocyanine(s)/C60 bulk heterojunction (BHJ) solar cells. It is shown that the co-evaporation of two merocyanine dyes with absorption bands at ~ 500 nm (SW dye) and ~ 650 nm (LW dye), respectively, together with C60 fullerene results in an improvement of open-circuit voltage (VOC), short-circuit current (JSC) as well as total power conversion efficiency (PCE) compared to the best single-donor cell. The enhancement of JSC is attributed to a higher photon harvesting efficiency of the mixed-donor devices due to a better spectral coverage.}, subject = {Merocyanine}, language = {en} } @phdthesis{Buerckstuemmer2011, author = {B{\"u}rckst{\"u}mmer, Hannah}, title = {Merocyanine dyes for solution-processed organic bulk heterojunction solar cells}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-66879}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2011}, abstract = {The technology of organic photovoltaics offers the possibility of low-cost devices due to easy fabrication procedures and low material consumption and at the same time high flexibility concerning the applied substrates or design features such as the color palette. Owing to these benefits, this research field is highly active, being reflected by the continuously rising number of publications. Chapter 1 gives an extensive overview of a part of these reports, namely the field of solution-processed BHJ organic solar cells using small molecules as electron-donating materials. In the early years of this research area (2006-2008), well known hole transporting materials such as triphenylamine based chromophores, oligothiophenes and polyaromatic hydrocarbons were applied. However, many of these dyes lacked absorption at longer wavelengths and were therefore limited in their light harvesting qualities. Later, chromophores based on low band gap systems consisting of electron-donating and electron-accepting units showing internal charge transfer overcame this handicap. Today, donor-substituted diketopyrrolopyrroles (D-A-D chromophores), squaraines (D-A-D chromophores) and acceptor substituted oligothiophenes (A-D-A chromophores) are among the most promising dyes for small molecule based organic solar cells with PCEs of 4-5\%. This work is based on the findings of the groups of W{\"u}rthner and Meerholz, which tested merocyanine dyes for the first time in organic BHJ solar cells.4 According to the B{\"a}ssler theory85, the high dipolarity of these dyes should hamper the charge transport, but the obtained first results with PCE of 1.7\% proved the potenital of this class of dyes for this application. Merocyanine dyes offer the advantages of facile synthesis and purification, high tinctorial strength and monodispersity. Additionally, the electronic structure of the dyes, namely the absorption as well as the electrochemical properties, can be adjusted by using the right combination of donor and acceptor units. For these reasons, this class of dye is highly interesting for the application in organic solar cells. It was the aim of the thesis to build more knowledge about the potential and limitations of merocyanines in BHJ photovoltaic devices. By screening a variety of donor and acceptor groups a comprehensive data set both for the molecular materials as well as for the respective solar devices was generated and analyzed. As one focus, the arrangement of the chromophores in the solid state was investigated to gain insight about the packing in the solar cells and its relevance for the performance of the latter. To do so, X-ray single crystal analyses were performed for selected molecules. By means of correlations between molecular properties and the characteristics of the corresponding solar cells, several design rules to generate efficient chromophores for organic photovoltaics were developed. The different donor and acceptor moieties applied in this work are depicted in the following ...}, subject = {organische Solarzelle}, language = {en} } @phdthesis{Beer2011, author = {Beer, Meike Vanessa}, title = {Correlation of ligand density with cell behavior on bioactive hydrogel layers}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-74454}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2011}, abstract = {Diese Arbeit besch{\"a}ftigte sich mit der Quantifizierung von Zelladh{\"a}sion vermittelnden Liganden in und auf d{\"u}nnen Hydrogelschichten, die zur Oberfl{\"a}chenmodifizierung auf Biomaterialien aufgebracht wurden. Das bereits etablierte und gut charakterisierte inerte NCO-sP(EO-stat-PO) Hydrogelsystem, das eine einfache und reproduzierbare Bioaktivierung mit Peptiden erlaubt, wurde als Basis f{\"u}r diese Arbeit verwendet. Diese Hydrogele k{\"o}nnen auf zwei Weisen funktionalisiert werden. Liganden k{\"o}nnen entweder mit der Prepolymerl{\"o}sung vor der Beschichtung gemischt (Einmischmethode) oder frische Hydrogelschichten mit einer Ligandenl{\"o}sung inkubiert werden (Inkubationsmethode). Der erste Teil dieser in drei Hauptteile unterteilten Arbeit, besch{\"a}ftigte sich mit der Konzentrationsbestimmung der Liganden in der gesamten Tiefe der Hydrogelschicht, w{\"a}hrend sich der zweite Teil auf die oberfl{\"a}chensensitive Quantifizierung von Zelladh{\"a}sion vermittelnden Molek{\"u}len an der biologischen Grenzfl{\"a}che konzentrierte. Die Ergebnisse wurden mit Zelladh{\"a}sionskinetiken verglichen. Der dritte Teil dieser Arbeit besch{\"a}ftigte sich mit der biochemischen als auch strukturellen Nachahmung der komplexen Extrazellul{\"a}rmatrix (ECM). Das ECM Protein Fibronektin (FN) wurde {\"u}ber Zucker-Lektin Anbindung pr{\"a}sentiert und Zellverhalten auf diesen biomimetischen Oberfl{\"a}chen untersucht. Ebenfalls wurde Zellverhalten in einer dreidimensionalen Faserumgebung mit identischer Oberfl{\"a}chenchemie wie in den beiden ersten Teilen dieser Arbeit untersucht und mit der Peptidkonzentration korreliert. Insgesamt, war die Hauptfragestellung in dieser Arbeit 'Wie viel?', d.h. einerseits die Ermittlung der maximalen, als auch der f{\"u}r Zelladh{\"a}sion optimalen Ligandendichte. Im ersten praktischen Teil der vorliegenden Arbeit (Klassische Quantifizierung) wurden Liganden in der gesamten Hydrogelschicht, als auch speziell in oberen Bereichen der Schichten quantifiziert. Die Untersuchung der Hydrogelschichten in Wellplatten und auf Glas funktionalisiert mit GRGDS und 125I-YRGDS erfolgte in Kapitel 3 mittels Radioaktivmessung. Wurden Hydrogelschichten mittels Inkubationsmethode funktionalisiert, konnte eine S{\"a}ttigung mit Liganden bei etwa 600 µg/mL ermittelt werden. Mittels Einmischmethode funktionalisierte Hydrogele erreichten keine maximale Ligandenkonzentration in den Schichten, mit dem Verh{\"a}ltnis 2/1 als maximales verwendetes Verh{\"a}ltnis. H{\"o}here Liganden zu Prepolymer Verh{\"a}ltnisse als 2/1 wurden jedoch nicht verwendet, um eine ausreichende Vernetzung der Hydrogele nicht zu gef{\"a}hrden. Zur Detektion mittels R{\"o}ntgenphotoelektronenspektroskopie (XPS) und Flugzeit-Sekund{\"a}rionen-Massen-spektrometrie (TOF-SIMS) (Kapitel 4) wurden eine fluorierte Aminos{\"a}ure und ein iodiertes Peptid mit den Prepolymeren in molaren Verh{\"a}ltnissen von 1/2, 1/1 und 2/1 gemischt. Beide Methoden ermittelten eine maximale Ligandenkonzentration bei Verh{\"a}ltnissen von 1/1. Zus{\"a}tzliche Liganden (2/1) f{\"u}hrten zu keiner vermehrten Anbindung. Wesentlich im Zusammenhang mit der Ligandenquantifizierung auf Biomaterialien ist, diese an der Oberfl{\"a}che, die f{\"u}r Zellen zug{\"a}nglich ist, durchzuf{\"u}hren. Im zweiten Teil dieser Arbeit (Oberfl{\"a}chensensitive Quantifizierung) kamen daher Methoden zum Einsatz, die Liganden ausschließlich auf der Oberfl{\"a}che quantifizierten. Zur Detektion mit Oberfl{\"a}chenplasmon-resonanz (SPR) und akustischer Oberfl{\"a}chenwellentechnologie (SAW) in Kapitel 5 musste die Standardbeschichtung der Hydrogele von Glas und Silikon auf Cystamin funktionalisierte Goldoberfl{\"a}chen {\"u}bertragen werden. Mittels Ellipsometrie und Rasterkraftmikroskopie (AFM) konnte nur eine d{\"u}nne und inhomogene Hydrogelbeschichtung nachgewiesen werden. Dennoch zeigten SPR und SAW die Unterbindung von Serum und Streptavidin (SA) Adsorption auf nicht funktionalisierten Schichten, jedoch eine spezifische und konzentrationsabh{\"a}ngige SA Bindung auf Hydrogelschichten, die mit Biocytin und GRGDSK-biotin funktionalisiert wurden. Die Ligandenquantifizierung mittels Enzymgekoppeltem Immunadsorptionstest (ELISA) und Enzymgekoppelten Lektinadsorptionstest (ELLA) (Kapitel 6) wurde auf Hydrogelschichten in Wellplatten und auf Glas angewendet, die mit verschiedenen Liganden mittels Inkubation und Einmischung funktionalisiert wurden. Das Modellmolek{\"u}l Biocytin, das biotinylierte Peptid GRGDSK-biotin, das ECM Protein Fibronektin (FN), als auch die Modellzucker N-Acetyl-glukosamin (GlcNAc) und N-Acetyllaktosamin (LacNAc) konnten spezifisch in verschiedenen Konzentrationen nachgewiesen werden. Beispielhaft seien hier Schichten auf Glas genannt, die mittels Einmischmethode mit GRGDSK-biotin funktionalisiert wurden, da diese zum Vergleich in Kapitel 8 herangezogen wurden. Auf diesen Oberfl{\"a}chen wurde eine maximale Peptidkonzentration auf der Oberfl{\"a}che bei einem Peptid zu Prepolymer Verh{\"a}ltnis von 1/5 ermittelt. Neben diesen verschiedenen Quantifzierungsmethoden ist die in vitro Analyse mit Zellen nicht zu vernachl{\"a}ssigen (Kapitel 7). Hierzu wurden Hydrogele auf Glas aufgebracht und mit GRGDS mittels Einmischmethode funktionalisiert. Durch Z{\"a}hlen adh{\"a}renter prim{\"a}rer humaner dermaler Fibroblasten (HDF) auf Mikroskopbildern wurde eine maximale Zelladh{\"a}sion bei dem Peptid zu Prepolymer Verh{\"a}ltnis von 1/5 festgestellt. Hingegen wurde ein Verh{\"a}ltnis von 1/2 f{\"u}r optimale Zelladh{\"a}sion ermittelt, wenn Zellen zur Quantifizierung von den Hydrogelen abgel{\"o}st und im CASY® Zellz{\"a}hler quantifiziert wurden. Zus{\"a}tzlich wurde die Zellvitalit{\"a}t durch Messung intrazellul{\"a}rer Enzymaktivit{\"a}ten gemessen, jedoch konnte kein Zusammenhang zwischen Zellvitalit{\"a}t und GRGDS Konzentration hergestellt werden. Adh{\"a}rente HDFs waren in allen F{\"a}llen vital, unabh{\"a}ngig von der Ligandenkonzentration auf der Oberfl{\"a}che. Auch die Mausfibroblasten Zelllinie NIH L929 wurde auf Hydrogelen mit verschiedenen GRGDS zu Prepolymer Verh{\"a}ltnissen durch Z{\"a}hlen adh{\"a}renter Zellen auf Mikroskopbildern untersucht. Diese im Verh{\"a}ltnis zu HDFs wesentlich kleineren Mauszellen ben{\"o}tigten h{\"o}here GRGDS Konzentrationen (2/1) f{\"u}r maximale Zelladh{\"a}sion. Nach der Ligandenquantifizierung in Kapitel 3 bis 7, wurden diese Ergebnisse in Kapitel 8 miteinander verglichen. Hierzu wurden Messungen auf Hydrogelschichten verwendet, die mittels Einmischmethode funktionalisiert wurden. W{\"a}hrend die Quantifizierung mittels Radioaktivmessung in der gesamten Tiefe der Hydrogelschichten keine maximale Ligandenkonzentration ermitteln konnte, war in den oberen Bereichen der Schicht ein Maximum an Liganden bei 1/1 festzustellen (XPS, TOF-SIMS). SPR und SAW wurden zum Vergleich nicht herangezogen, da die Beschichtung auf Gold erst optimiert werden muss. Oberfl{\"a}chensensitive Quantifizierung mittels ELISA und Zelladh{\"a}sion, die lediglich die sterisch zug{\"a}nglichen Liganden auf einer Oberfl{\"a}che nachweisen, ergaben {\"u}bereinstimmend eine optimale Ligandenkonzentration f{\"u}r SA Bindung und Zelladh{\"a}sion bei einem Peptid zu Prepolymer Verh{\"a}ltnis von 1/5. Dies unterstreicht, wie wichtig der Vergleich der Methoden, als auch die Verwendung von oberfl{\"a}chensensitiven Methoden ist. Der dritten Teil dieser Arbeit besch{\"a}ftigte sich mit der biochemischen und strukturellen Nachahmung der komplexen extrazellul{\"a}ren Umgebung (Advanced ECM engineering), ein wichtiger Aspekt in der Biomaterialforschung, da zum gr{\"o}ßten Teil zwei-dimensionale Biomaterialien zum Einsatz kommen, die direkt mit Liganden kovalent funktionalisiert werden. Die ECM ist jedoch um ein Vielfaches komplexer und die bestm{\"o}gliche Nachahmung ist Voraussetzung f{\"u}r eine bessere Akzeptanz durch Zellen und Gewebe. In Kapitel 9 wurde eine M{\"o}glichkeit aufgezeigt, das ECM Protein FN nicht-kovalent {\"u}ber Zucker-Lektinbindungen zu immobilisieren. Ein Schichtaufbau von Hydrogel, dem darauf durch Mikrokontakt-druckverfahren (MCP) kovalent gebundenen Zucker Poly-N-Acetyllaktosamin (polyLacNAc) und den darauf nicht-kovalent gebundenen Galektin His6CGL2 und FN, konnte mit Fluoreszenzf{\"a}rbung elegant nachgewiesen werden. Optimale Konzentrationen f{\"u}r den Schichtaufbau wurden mittels ELLA/ELISA auf Hydrogelschichten ermittelt, die durch Inkubation mit dem Zucker funktionalisiert wurden. Nur der komplette Schichtaufbau konnte zufriedenstellende HDF Adh{\"a}sion vermitteln und im Vergleich zu Zellkulturpolystyrol (TCPS) Oberfl{\"a}chen konnten HDFs auf dem biomimetischen Schichtaufbau schneller adh{\"a}rieren und spreiten. Zudem wurde die Umorganisierung von auf Glas adsorbiertem FN, auf NCO-sP(EO-stat-PO) kovalent gebundenem FN und biomimetisch {\"u}ber polyLAcNAc-His6CGL2 gebundenem FN durch HDFs verglichen. Nur auf den biomimetischen Oberfl{\"a}chen schien eine Umorganisation durch die Zellen m{\"o}glich, wie sie auch in der ECM zu finden ist. Diese biomimetische und flexible Pr{\"a}sentation eines Proteins erwies sich als vielversprechende M{\"o}glichkeit eine biomimetischere Oberfl{\"a}che f{\"u}r Zellen zu schaffen, die eine optimale Biokompatibilit{\"a}t erm{\"o}glichen k{\"o}nnte. Auch die strukturelle Nachahmung der ECM ist eine vielversprechende Strategie zum Nachbau der ECM. In Kapitel 10 wurde ein Einschrittverfahren zur Herstellung synthetischer, bioaktiver und degradierbarer Faserkonstrukte durch Elektrospinnen zur Nachahmung der ECM pr{\"a}sentiert. In diesem System wurden durch Zugabe von NCO-sP(EO-stat-PO) als reaktives Additiv zu Poly(D,L-laktid-co-Glycolid) (PLGA) Fasern hergestellt, die mit einer ultrad{\"u}nnen, inerten Hydrogelschicht versehen waren. Es konnte gezeigt werden, dass durch die Verwendung von NCO-sP(EO-stat-PO) als Additiv die Adsorption von Rinderserumalbumin (BSA) im Vergleich zu PLGA um 99,2\% reduziert, die Adh{\"a}sion von HDFs verhindert und die Adh{\"a}sion von humanen mesenchymalen Stammzellen (MSC) minimiert werden konnten. Spezifische Bioaktivierung wurde durch Zugabe von Peptidsequenzen zur Spinl{\"o}sung erreicht, welche kovalent in die Hydrogelschicht eingebunden werden konnten und kontrollierte Zell-Faser Interaktionen erm{\"o}glichten, Um die spezifische Zelladh{\"a}sion an solchen inerten Fasern zu erzielen, wurde GRGDS kovalent auf der Faseroberfl{\"a}che gebunden. Dies erfolgte durch Zugabe des Peptids zur Polymerl{\"o}sung vor dem Elektrospinnen. Als Negativkontrolle wurde die Peptidsequenz GRGES an die Faseroberfl{\"a}che gebunden, welche durch Zellen nicht erkannt wird. W{\"a}hrend die Verhinderung unspezifischer Proteinadsorption f{\"u}r die Peptidmodifizierten Fasern erhalten blieb, konnten HDFs lediglich auf den mit GRGDS Peptid modifizierten Fasern adh{\"a}rieren, proliferieren und nach zwei Wochen eine konfluente Zellschicht aus vitalen Zellen bilden. Zus{\"a}tzlich konnten MSCs auf GRGDS funktionalisierten Fasern adh{\"a}rieren. Liganden konnten auf Fasern quantifiziert werden, indem die ELISA Technik aus Kapitel 6 auf Faseroberfl{\"a}chen transferiert wurde. Um das Potential der biochemischen und strukturellen Nachbildung der ECM aufzuzeigen, wurden beide Ans{\"a}tze miteinander kombiniert. Die Immobilisierung von polyLacNAc auf die Hydrogelfasern durch Inkubation und der Schichtaufbau mit His6CGL2 und FN resultierte in HDF Adh{\"a}sion.}, subject = {Hydrogel}, language = {en} } @article{CecilRikanovicOhlsenetal.2011, author = {Cecil, Alexander and Rikanovic, Carina and Ohlsen, Knut and Liang, Chunguang and Bernhardt, Jorg and Oelschlaeger, Tobias A. and Gulder, Tanja and Bringmann, Gerd and Holzgrabe, Ulrike and Unger, Matthias and Dandekar, Thomas}, title = {Modeling antibiotic and cytotoxic effects of the dimeric isoquinoline IQ-143 on metabolism and its regulation in Staphylococcus aureus, Staphylococcus epidermidis and human cells}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-68802}, year = {2011}, abstract = {Background: Xenobiotics represent an environmental stress and as such are a source for antibiotics, including the isoquinoline (IQ) compound IQ-143. Here, we demonstrate the utility of complementary analysis of both host and pathogen datasets in assessing bacterial adaptation to IQ-143, a synthetic analog of the novel type N,C-coupled naphthyl-isoquinoline alkaloid ancisheynine. Results: Metabolite measurements, gene expression data and functional assays were combined with metabolic modeling to assess the effects of IQ-143 on Staphylococcus aureus, Staphylococcus epidermidis and human cell lines, as a potential paradigm for novel antibiotics. Genome annotation and PCR validation identified novel enzymes in the primary metabolism of staphylococci. Gene expression response analysis and metabolic modeling demonstrated the adaptation of enzymes to IQ-143, including those not affected by significant gene expression changes. At lower concentrations, IQ-143 was bacteriostatic, and at higher concentrations bactericidal, while the analysis suggested that the mode of action was a direct interference in nucleotide and energy metabolism. Experiments in human cell lines supported the conclusions from pathway modeling and found that IQ-143 had low cytotoxicity. Conclusions: The data suggest that IQ-143 is a promising lead compound for antibiotic therapy against staphylococci. The combination of gene expression and metabolite analyses with in silico modeling of metabolite pathways allowed us to study metabolic adaptations in detail and can be used for the evaluation of metabolic effects of other xenobiotics.}, subject = {Staphylococcus aureus}, language = {en} } @phdthesis{Berberich2012, author = {Berberich, Martin}, title = {Rylene Bisimide-Diarylethene Photochromic Systems for Non-Destructive Memory Read-out}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-73517}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2012}, abstract = {Diese Doktorarbeit zeigt deutlich verbesserte aus Rylenbisimiden und Diarylethenen aufgebaute, photochrome Systeme f{\"u}r das nicht-destruktive Auslesen von Fluoreszenz. Dabei wird die Fluoreszenz der Emittereinheit durch photoinduzierten Elektronentransfer nur zu einer isomeren Form des Photochromes gel{\"o}scht. Die Triebkraft f{\"u}r den Fluoreszenz-l{\"o}schenden Elektronentransfer wurde mittels Rehm-Weller-Gleichung berechnet. Die erhaltenen Systeme erf{\"u}llen die notwendigen Anforderungen f{\"u}r ein nicht-destruktives Auslesen in einem auf Schreiben, Auslesen und L{\"o}schen basierenden fluoreszierenden Datenspeicher.}, subject = {Photochromie}, language = {en} } @phdthesis{Qamar2012, author = {Qamar, Riaz-ul}, title = {Synthesis of functionalized molecular probes for bioorthogonal metabolic glycoengineering}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-73378}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2012}, abstract = {Biomolecules are difficult to investigate in their native environment. The vast complexity of cellular systems and seldom availability of chemical reactions compatible with the physiological milieu make it a challenging task. Bioorthogonal chemical reactions serve as a key to achieve selective ligation, whose components must react rapidly and selectively with each other under physiological conditions in the presence of the plethora of functionalities necessary to sustain life. In this dissertation, we focused on the synthesis of chemical reporters and probe molecules for bioorthogonal labeling through click reaction. Initially, sialic acid derivatives with a linker containing terminal alkyne functionality were synthesized. After the synthesis of azide derivatives of fluorescent dyes as counter partners, they were conjugated with sialic acids through Cu(I) catalyzed alkyne azide cycloaddition (CuAAC). The successful in vitro conjugation of Sia and fluorescent dyes was followed by metabolic tagging of human larynx carcinoma (HEp-2) and the carcinoma of Chinese hamster ovary (CHO­K1) with alkynated Sia that were subsequently ligated with fluorescein azide. Finally, the stained cells were subjected to fluorescent microscopy to obtain their images. To enable the click reaction compatible to in vivo applications, the reactivity of cyclooctyne was enhanced by two different approaches. In a first approach, following the Bertozzi's strategy, two fluorine atoms were introduced adjacent to the alkyne to lower the LUMO. In a second strategy the ring strain of cyclooctyne was attempted to be enhanced by the introduction of an amide group. In addition, glutarimide derivatives with free amino and carboxylic acid functional groups were synthesized by domino-Michael addition-cyclization-reaction.}, subject = {Click-Chemie}, language = {en} } @phdthesis{Zhang2012, author = {Zhang, Guoliang}, title = {Phytochemical Research on Two Ancistrocladus Species, Semi-Synthesis of Dimeric Naphthylisoquinoline Alkaloids, and Structure Optimization of Antitumoral Naphthoquinones}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-72734}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2012}, abstract = {Plant-derived natural products and their analogs continue to play an important role in the discovery of new drugs for the treatment of human diseases. Potentially promising representatives of secondary metabolites are the naphthylisoquinoline alkaloids, which show a broad range of activities against protozoan pathogens, such as plasmodia, leishmania, and trypanosoma. Due to the increasing resistance of those pathogens against current therapies, highly potent novel agents are still urgently needed. Thus, it is worthy to discover new naphthylisoquinoline alkaloids hopefully with pronounced bioactivities by isolation from plants or by synthesis. The naphthylisoquinoline alkaloids are biosynthetically related to another class of plant-derived products, the naphthoquinones, some of which have been recently found to display excellent anti-multiple myeloma activities without showing any cytotoxicities on normal blood cells. Multiple myeloma still remains incurable, although remissions may be induced with co-opted therapeutic treatments. Therefore, more potent naphthoquinones are urgently required, and can be obtained by isolation from plants or by synthesis. In detail, the results in this thesis are listed as follows: 1) Isolation and characterization of naphthylisoquinoline alkaloids from the stems of a Chinese Ancistrocladus tectorius species. Nine new naphthylisoquinoline alkaloids, named ancistectorine A1 (60), N-methylancistectorine A1 (61), ancistectorine A2 (62a), 5-epi-ancistectorine A2 (62b), 4'-O-demethylancistectorine A2 (63), ancistectorine A3 (64), ancistectorine B1 (65), ancistectorine C1 (66), and 5-epi-ancistrolikokine D (67) were isolated from the Chinese A. tectorius and fully characterized by chemical, spectroscopic, and chiroptical methods. Furthermore, the in vitro anti-infectious activities of 60-62 and 63-66 have been tested. Three of the metabolites, 61, 62a, and 62b, exhibited strong antiplasmodial activities against the strain K1 of P. falciparum without showing significant cytotoxicities. With IC50 values of 0.08, 0.07, and 0.03 μM, respectively, they were 37 times more active than the standard chloroquine (IC50 = 0.26 μM). Moreover, these three compounds displayed high antiplasmodial selectivity indexes ranging from 100 to 3300. According to the TDR/WHO guidelines, they could be considered as lead compounds. In addition, seven alkaloids, 69-74 (structures not shown here), were isolated from A. tectorius that were known, but new to the plant, together with another fourteen known compounds (of these, only the structures of the three main alkaloids, 5a, 5b, and 78 are shown here), which had been previously found in the plant. The three metabolites ancistrocladine (5a), hamatine (5b), and (+)-ancistrocline (78) were found to show no or moderate activities against the MM cell lines. 2) Isolation and characterization of naphthylisoquinoline alkaloids from the root bark of a new, botanically yet undescribed Congolese Ancistrocladus species. An unprecedented dimeric Dioncophyllaceae-type naphthylisoquinoline alkaloid, jozimine A2 (84), as first recognized by G. Bauckmann from an as yet undescribed Ancistrocladus species, was purified and characterized as part of this thesis. Its full structural assignment was achieved by spectroscopic and chiroptical methods, and further confirmed by an X-ray diffraction analysis, which had never succeeded for any other dimeric naphthylisoquinoline alkaloids before. Structurally, the dimer is composed of two identical 4'-O-demethyldioncophylline A halves, coupled through a sterically hindered central axis at C-3',3'' of the two naphthalene moieties. Pharmacologically, jozimine A2 (84) showed an extraordinary antiplasmodial activity (IC50 = 1.4 nM) against the strain NF54 of P. falciparum. Beside jozimine A2 (85), another new alkaloid, 6-O-demethylancistrobrevine C (84), and four known ones, ancistrocladine (5a), hamatine (5b), ancistrobrevine C (86), and dioncophylline A (6) were isolated from the Ancistrocladus species, the latter in a large quantity (~500 mg), showing that the plant produces Ancistrocladaceae-type, mixed-Ancistrocladaceae/Dioncophyllaceae-type, and Dioncophyllaceae-type naphthyl- isoquinoline alkaloids. Remarkably, it is one of the very few plants, like A. abbreviatus, and A. barteri, that simultaneously contain typical representatives of all the above three classes of alkaloids. 3) Semi-synthesis of jozimine A2 (85), 3'-epi-85, jozimine A3 (93) and other alkaloids from dioncophylline A (6). The dimeric naphthylisoquinoline alkaloids, jozimine A2 (85) and 3'-epi-85, constitute rewarding synthetic targets for a comparative analysis of their antiplasmodial activities and for a further confirmation of the assigned absolute configurations of the isolated natural product of 85. They were semi-synthesized in a four-step reaction sequence from dioncophylline A (6) in cooperation with T. B{\"u}ttner. The key step was a biomimetic phenol-oxidative dimerization at C-3' of the N,O-dibenzylated derivative of 89 by utilizing Pb(OAc)4. This is the first time that the synthesis of such an extremely sterically hindered (four ortho-substituents) naphthylisoquinoline alkaloid - with three consecutive biaryl axes! - has been successfully achieved. A novel dimeric naphthylisoquinoline, jozimine A3 (93), bearing a 6',6''-central biaryl axis, was semi-synthesized from 5'-O-demethyldioncophylline A (90) by a similar biomimetic phenol-oxidative coupling reaction as a key step, by employing Ag2O. HPLC analysis with synthetic reference material of 3'-epi-85 and 93 for co-elution revealed that these two alkaloids clearly are not present in the crude extract of the Ancistrocladus species from which jozimine A2 (85) was isolated. This evidences that jozimine A2 (85) is very specifically biosynthesized by the plant with a high regio- and stereoslectivity. Remarkably, the two synthetic novel dimeric naphthylisoquinoline alkaloids 3'-epi-85 and 93 were found to display very good antiplasmodial activities, albeit weaker than that of the natural and semi-synthetic product 85. Additionally, the two compounds 3'-epi-85 and 93 possessed high or moderate selectivity indexes, which were much lower than that of 85. However, they can still be considered as new lead structures. Two unprecedented oxidative products of dioncophylline A, the diastereomeric dioncotetralones A (94a) and B (94b), were synthesized from dioncophylline A (6) in a one-step reaction. Remarkably, the aromatic properties in the "naphthalene" and the "isoquinoline" rings of 94a and 94b are partially lost and the "biaryl" axis has become a C,C-double bond, so that the two halves are nearly co-planar to each other, which has never been found among any natural or synthetic naphthylisoquinoline alkaloid. Their full structural characterization was accomplished by spectroscopic methods and quantum-chemical CD calculations (done by Y. Hemberger). The presumed reaction mechanism was proposed in this thesis. In addition, one of the two compounds, 94a, exhibited a highly antiplasmodial activity (IC50 = 0.09 μM) with low cytotoxicity, and thus, can be considered as a new promising lead structure. Its 2'-epi-isomer, 94b, was inactive, evidencing a significant effect of chirality on the bioactivity. Of a number of naphthylisoquinoline alkaloids tested against the multiple-myeloma cell lines, the three compounds, dioncophylline A (6), 4'-O-demethyldioncophylline A (89), and 5'-O-demethyldioncophylline A (90) showed excellent activities, even much stronger than dioncoquinones B (10), C (102), the epoxide 175, or the standard drug melphalan. 4) Isolation and characterization of bioactive naphthoquinones from cell cultures of Triphyophyllum peltatum. Three new naphthoquinones, dioncoquinones C (102), D (103), and E (104), the known 8-hydroxydroserone (105), which is new to this plant, and one new naphthol dimer, triphoquinol A (107), were isolated from cell cultures of T. peltatum in cooperation with A. Irmer. Dioncoquinone C (102) showed an excellent activity against the MM cells, very similar to that of the previously found dioncoquinone B (10), without showing any inhibitory effect on normal cells. The other three naphthoquinones, 103105, were inactive or only weakly active. 5) Establishment of a new strategy for a synthetic access to dioncoquinones B (10) and C (102) on a large scale for in vivo experiments and for the synthesis of their analogs for first SAR studies. Before the synthesis of dioncoquinone B (10) described in this thesis, two synthetic pathways had previously been established in our group. The third approach described here involved the preparation of the joint synthetic intermediate 42 with the previous two routes. The tertiary benzamide 135 was ortho-deprotonated by using s-BuLi/TMEDA, followed by transmetallation with MgBr2▪2Et2O, and reaction with 2-methylallyl bromide (139). It resulted in the formation of ortho-allyl benzamide 140, which was cyclized by using methyl lithium to afford the naphthol 42. This strategy proved to be the best among the established three approaches with regard to its very low number of steps and high yields. By starting with 136, this third strategy yielded the related bioactive natural product, dioncoquinone C (102), which was accessed by total synthesis for the first time. To identify the pharmacophore of the antitumoral naphthoquinones, a library of dioncoquinone B (10) and C (102) analogs were synthesized for in vitro testing. Among the numerous naphthoquinones tested, the synthetic 7-O-demethyldioncoquinone C (or 7-O-hydroxyldioncoquinone B) (145), constitutes another promising basic structure to develop a new anti-MM agent. Furthermore, preliminary SAR results evidence that the three hydroxy functions at C-3, C-5, and C-6 are essential for the biological properties as exemplarily shown through the compounds 10, 102, and 145. All other mixed OH/OMe- or completely OMe-substituted structures were entirely inactive. By a serendipity the expoxide 175 was found to display the best anti-MM activity of all the tested isolated metabolites from T. peltatum, the synthesized naphthoquinones, and their synthetic intermediates. Toxic effects of 175 on normal cells were not observed, in contrast to the high toxicities of all other epoxides. Thus, the anti-MM activity of 175 is of high selectivity. The preliminary SAR studies revealed that the 6-OMe group in 175 is required, thus differed with the above described naphthoquinones (where 6-OH is a requisite in 10, 102, and 145), which evidenced potentially different modes of action for these two classes of compounds. 6) The first attempted total synthesis of the new naturally occurring triphoquinone (187a), which was recently isolated from the root cultures of T. peltatum in our group. A novel naphthoquinone-naphthalene dimer, 187a (structure shown in Chapter 10), was isolated in small quantities from the root cultures of T. peltatum. Thus, its total synthesis was attempted for obtaining sufficient amounts for selected biotestings. The key step was planned to prepare the extremely sterically hindered (four ortho-substituents) binaphthalene 188 by a coupling reaction between the two 2-methylnaphthalene derivatives. Test reactions involving a system of two simplified 2-methylnaphthylboron species and 2-methylnaphthyl bromide proved the Buchwald ligand as most promising. The optimized conditions were then applied to the two true - highly oxygenated - coupling substrates, between the 2-methylnaphthylboron derivatives 210, 211, 213, or 214 and the 2-methylnaphthyl iodides (or bromides) 215 (206), 215 (206), 212 (205), or 212 (205), respectively. Unfortunately, this crucial step failed although various bases and solvent systems were tested. This could be due to the high electron density of the two coupling substrates, both bearing strongly OMOM/OMe-donating function groups. Therefore, a more powerful catalyst system or an alternative synthetic strategy must be explored for the total synthesis of 187a. 7) Phytochemical investigation of the Streptomyces strain RV-15 derived from a marine sponge. Cyclodysidins A-D (216-219), four new cyclic lipopeptides with a- and ß-amino acids, were isolated from the Streptomyces strain RV15 derived from a marine sponge by Dr. U. Abdelmohsen. Their structures were established as cyclo-(ß-AFA-Ser-Gln-Asn-Tyr-Asn-Ser-Thr) by spectroscopic analysis using 2D NMR techniques and CID-MS/MS in the course of this thesis. In conclusion, the present work contributes to the discovery of novel antiplasmodial naphthylisoquinoline alkaloids and antitumoral naphthoquinones, which will pave the way for future studies on these two classes of compounds.}, subject = {Ancistrocladus}, language = {en} } @article{PratiharGhoshStepanenkoetal.2010, author = {Pratihar, Pampa and Ghosh, Suhrit and Stepanenko, Vladimir and Patwardhan, Sameer and Grozema, Ferdinand C. and Siebbeles, Laurens D. A. and W{\"u}rthner, Frank}, title = {Self-assembly and semiconductivity of an oligothiophene supergelator}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-67817}, year = {2010}, abstract = {A bis(trialkoxybenzamide)-functionalized quaterthiophene derivative was synthesized and its self-assembly properties in solution were studied. In non-polar solvents such as cyclohexane, this quaterthiophene π-system formed fibril aggregates with an H-type molecular arrangement due to synergistic effect of hydrogen bonding and π-stacking. The self-assembled fibres were found to gelate numerous organic solvents of diverse polarity. The charge transport ability of such elongated fibres of quaterthiophene π-system was explored by the pulse radiolysis time resolved microwave conductivity (PR-TRMC) technique and moderate mobility values were obtained. Furthermore, initial AFM and UV-vis spectroscopic studies of a mixture of our electron-rich quaterthiophene derivative with the electron acceptor [6,6]-phenyl-C61-butyric acid methyl ester (PCBM) revealed a nanoscale segregated assembly of the individual building blocks in the blend.}, subject = {Organische Chemie}, language = {en} } @article{HomannQamarSerimetal.2010, author = {Homann, Arne and Qamar, Riaz-ul and Serim, Sevnur and Dersch, Petra and Seibel, Juergen}, title = {Bioorthogonal metabolic glycoengineering of human larynx carcinoma (HEp-2) cells targeting sialic acid}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-67806}, year = {2010}, abstract = {Sialic acids are located at the termini of mammalian cell-surface glycostructures, which participate in essential interaction processes including adhesion of pathogens prior to infection and immunogenicity. Here we present the synthesis and bioorthogonal metabolic incorporation of the sialic acid analogue N-(1-oxohex-5-ynyl)neuraminic acid (Neu5Hex) into the cell-surface glycocalyx of a human larynx carcinoma cell line (HEp-2) and its fluorescence labelling by click chemistry.}, subject = {Organische Chemie}, language = {en} } @phdthesis{Schmidt2011, author = {Schmidt, Ralf}, title = {Hamilton-Receptor-Mediated Self-Assembly of Merocyanine Dyes into Supramolecular Polymers}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-56265}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2011}, abstract = {Die Selbstorganisation von Merocyaninfarbstoffen zu supramolekularen Polymeren wurde untersucht. Dabei konnte die Anordnung der hoch dipolaren Farbstoffe durch die Verwendung von verschiedenen Kombinationen von Wasserstoffbr{\"u}ckenbindungsmotiven und dipolarer Aggregation der Chromophore gesteuert.}, subject = {Selbstorganisation}, language = {en} } @article{ChristlBruentrup1974, author = {Christl, Manfred and Br{\"u}ntrup, Gisela}, title = {Diimine Reduction and Ozonolysis of Benzvalene}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-57953}, year = {1974}, abstract = {Via reduction of benzvalene (1) with diirnine tricyclo[3.1.0.02•6]hexane is obtained in good yield. The procedure renders 3, which has already been synthesized by Lemal and Shim, accessible much easier and in larger quantities. IH and 13C n.m.r. spectroscopic data are discussed. Both the thermal and the AgBF4-catalyzed rearrangernent of 3 yield 1,3-cyclohexadiene (8). - The ozonolysis of 1 with subsequent LiAIH4-reduction results in cis-I,3- bis(hydroxyrnethyl)cyclobutane (13a).}, subject = {Organische Chemie}, language = {en} } @phdthesis{SafontSempere2010, author = {Safont Sempere, Marina Montserrat}, title = {Chiral self-sorting of atropo-enantiomeric perylene bisimide dyes}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-55359}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2010}, abstract = {This thesis included the synthesis of conformationally stable chiral perylene bisimide (PBI) dyes, the study of their optical properties in solution and their chiral self-sorting behaviour in nonpolar solvents in which dimerization via pi-pi-stacking takes place. Furthermore, the influence of PBI core chirality on the properties of these dyes in the condensed state has been also studied. We have demonstrated and quantified the prevalence of chiral self-recognition over self-discrimination in pi-stacking dimerization of PBIs. It has been shown that this self-recognition event is compromised by the increasing flexibility of the structures related to the size of the OEG bridging units. Moreover, the inherent chirality of these PBIs has been proven to strongly influence their condensed state properties, for which large differences between the pure enantiomers and the racemates were revealed, as well as between the different bridged macrocyclic PBIs.}, subject = {Farbstoff}, language = {en} } @article{KauppSchleyer1992, author = {Kaupp, Martin and Schleyer, Paul von Rague}, title = {Do Low-Coordinated Group 1-3 cations M\(^n\) \(^+\)L\(_m\) (Mn\(^+\) = K\(^+\), Rb\(^+\), Cs\(^+\), Ca\(^{2+}\), Sr\(^{2+}\), Ba\(^{2+}\), Sc\(^{3+}\), Y\(^{3+}\), La\(^{3+}\); L = NH\(_3\), H\(_2\)0, HF; m = 1-3) with a Formal Noble-Gas Electron Configuration Favor Regular or "Abnormal" Shapes?}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-60111}, year = {1992}, abstract = {No abstract available}, subject = {Anorganische Chemie}, language = {en} } @phdthesis{Sengupta2011, author = {Sengupta, Sanchita}, title = {Bio-inspired Zinc Chlorin Dye Assemblies for Supramolecular Electronics}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-66935}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2011}, abstract = {Chlorophylls are the most important pigments owing to their involvement in photosynthesis. They perform multiple functions that arise due to their optical and redox as well as packing properties. Semisynthetic zinc chlorins investigated in this thesis are the counterparts for the natural protein-free bacteriochlorophyll (BChl) c assemblies in light-harvesting (LH) systems in bacterial chlorosomes. The major advantage of the zinc chlorin model compounds over the native BChls lies in their facile semisynthetic accessibility from chlorophyll a (Chl a), their higher chemical stability and the possibility to influence their packing by suitable chemical modifications of peripheral side chains. Whilst the favorable excitonic properties and the suitability of ZnChl and natural BChl c dye aggregates for long distance exciton transport are well documented, charge transport properties of aggregates of semisynthetic ZnChls are hitherto unexplored. The present study involves structural elucidations of aggregates of a variety of semisynthetic zinc chlorin derivatives in solution, in solid state and on surfaces by combination of spectroscopic, crystallographic and microscopic techniques, followed by investigation of charge transport properties and conductivities of these aggregates. Chart 1 shows the different ZnChls synthesized in this work that are functionalized with hydroxy or methoxy substituents at 31 position and contain different substituents at the 172-position benzyl ester functional group. The self-assembly of these dyes is strongly dependent upon their chemical structures. While ZnChls 1a, 2a, 3, which are functionalized with 31-hydroxy group bearing dodecyl and oligoethylene glycol side chains form well-soluble rod aggregates, the corresponding 31-methoxy functionalized counterparts 1b, 2b form stacks in solution and on surfaces. These supramolecular polymers have been studied in detail in Chapter 3 by UV/Vis and circular dichroism (CD) spectroscopy and dynamic light scattering (DLS). These studies provided useful insights into the aggregation process of these two types of aggregates. Whereas 31-hydroxy functionalized ZnChl 1a self-assemble into rod aggregates via an isodesmic mechanism, corresponding stack aggregates of ZnChl 1b are formed by a cooperative nucleation-elongation pathway. Detailed electron microscopic studies such as transmission electron microscopy (TEM) and scanning transmission electron microscopy (STEM) provided unequivocal evidence for hollow tubular nanostructures of water-soluble 31-hydroxy zinc chlorin 3 aggregates for the first time. The measured tube diameter of ~ 5-6 nm of these aggregates is in excellent agreement with electron microscopy data of BChl c rod aggregates in chlorosomes (Chloroflexus aurantiacus, diameter ~ 5-6 nm) and thus complied with the tubular model postulated by Holzwarth and Schaffner... In concord with their highly organized structures, micrometer-scale one dimensionality, robust nature and efficient charge transport capabilities, these self-assembled ZnChl nanotubular, stack and liquid crystalline assemblies are highly promising for supramolecular electronic applications. Research efforts in utilizing these assemblies for (opto)electronic device fabrication, for instance, in organic field effect transistors, should thus be rewarding in the future...}, subject = {Supramolekulare Chemie}, language = {en} } @article{WissingKauppBoersmaetal.1994, author = {Wissing, Elmo and Kaupp, Martin and Boersma, Jaap and Spek, Anthony L. and Koten, Gerard van}, title = {Alkylation Reactions of Dialkylzinc Compounds with 1,4- Diaza- 1,3-butadienes: Cationic and radical Anionic Organozinc Intermediates. Molecular Structure of the Cationic Organozinc Species [MeZn(t-BuN=CHCH=N-t-Bu)]O\(_3\)SCF\(_3\) and Me\(_2\)Zn(bpy)(bpy = 2,2' -Bipyridine)}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-60008}, year = {1994}, abstract = {No abstract available}, subject = {Anorganische Chemie}, language = {en} } @phdthesis{Dehm2010, author = {Dehm, Volker Christoph}, title = {Synthesis and Characterization of an Oligo(Phenylene Ethynylene)-Based Perylene Bisimide Foldamer}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-53211}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2010}, abstract = {The present work is part of the currently only rudimentary understanding of the structure-property relationships in the self-assembly of pi-conjugated organic molecules. Such structures may reveal favorable photophysical and semiconducting properties due to the weak non-covalent pi-pi interactions between the monomer units. The specific mutual orientation of the dyes is known to evoke individual functional properties for the condensed matter, however, the related electronic processes are still not well-understood and further enhancements of functional properties are seldom triggered by rational design. The pi-pi self-assembly structures of perylene bisimide (PBI) dyes are promising, versatile materials for organic electronic devices and have been elected for this thesis as an archetype aggregate system to investigate the dye-dye interactions in more detail. In cooperation with experts in the field of spectroscopy and theory the development of reliable routines towards a better understanding of the origins of the functional properties may be feasible, and, on a longer time-line, such knowledge may enable optimization of functional organic materials. Having designed such structures entailed the challenge of developing feasible synthesis strategies, and to actually generate the targeted molecules by synthesis. Several synthesis approaches were conducted until finally a perylene bisimide foldamer was obtained based on a Sonogashira co-polymerization reaction. After purification and enrichment of the larger-sized species by means of semi-preparative gel permeation chromatography (GPC) the average size of an octamer (8500 Da) species was determined by analytical GPC. The low polydispersity index (PD) of 1.1 is indicative of a sharp size distribution of the oligomers. This average size was confirmed by performing diffusion ordered NMR spectroscopy (DOSY). Furthermore, MALDI-TOF mass analysis substantiated the structural integrity of the co-polymerization product. Solvent-dependent UV/vis spectroscopic investigations demonstrated that intramolecular PBI  aggregates are reversibly formed, indicating that this oligomer is able to fold and unfold in the intended manner upon changing external conditions. In the unfolded states, the PBI moieties are closely arranged due to the short OPE bridges (< 2.4 nm), which is expressed by an exciton coupling interaction of the dyes and therefore the characteristic monomer absorption pattern of the PBI chromophore cannot be obtained in the unfolded states. More interestingly, the folded state revealed a pronounced aggregate spectrum of the PBIs, however, striking differences in the shape of the absorption spectrum compared to our previously investigated PBI self-assembly were obtained.}, subject = {Perylenbisdicarboximide