@phdthesis{Parragh2013, author = {Parragh, Nicolaus}, title = {Strongly Correlated Multi-Orbital Systems : A Continuous-Time Quantum Monte Carlo Analysis}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-85253}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2013}, abstract = {In this thesis I present results concerning realistic calculations of correlated fermionic many-body systems. One of the main objectives of this work was the implementation of a hybridization expansion continuous-time quantum Monte Carlo (CT-HYB) algorithm and of a flexible self-consistency loop based on the dynamical mean-field theory (DMFT). DMFT enables us to treat strongly correlated electron systems numerically. After the implementation and extensive testing of the program we investigated different problems to answer open questions concerning correlated systems and their numerical treatment.}, subject = {Monte-Carlo-Simulation}, language = {en} } @phdthesis{Esterlechner2013, author = {Esterlechner, Jasmina}, title = {Role of the DREAM complex in mouse embryonic stem cells and identification of ZO-2 as a new LIN9 interacting protein}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-90440}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2013}, abstract = {The DREAM complex plays an important role in regulation of gene expression during the cell cycle. It was previously shown that the DREAM subunits LIN9 and B-MYB are required for early embryonic development and for the maintenance of the inner cell mass in vitro. In this work the effect of LIN9 or B-MYB depletion on embryonic stem cells (ESC) was examined. It demonstrates that LIN9 and B-MYB knock down changes the cell cycle distribution of ESCs and results in an accumulation of cells in G2 and M and in an increase of polyploid cells. By using genome-wide expression studies it was revealed that the depletion of LIN9 leads to downregulation of mitotic genes and to upregulation of differentiation-specific genes. ChIP-on chip experiments determined that mitotic genes are direct targets of LIN9 while lineage specific markers are regulated indirectly. Importantly, depletion of LIN9 does not alter the expression of the pluripotency markers Sox2 and Oct4 and LIN9 depleted ESCs retain alkaline phosphatase activity. I conclude that LIN9 is essential for proliferation and genome stability of ESCs by activating genes with important functions in mitosis and cytokinesis. The exact molecular mechanisms behind this gene activation are still unclear as no DREAM subunit features a catalytically active domain. It is assumed that DREAM interacts with other proteins or co-factors for transcriptional activation. This study discovered potential binding proteins by combining in vivo isotope labeling of proteins with mass spectrometry (MS) and further analysed the identified interaction of the tight junction protein ZO-2 with DREAM which is cell cycle dependent and strongest in S-phase. ZO-2 depletion results in reduced cell proliferation and decreased G1 gene expression. As no G2/M genes, typical DREAM targets, are affected upon ZO-2 knock down, it is unlikely that ZO-2 binding is needed for a functional DREAM complex. However, this work demonstrates that with (MS)-based quantitative proteomics, DREAM interacting proteins can be identified which might help to elucidate the mechanisms underlying DREAM mediated gene activation.}, subject = {Zellzyklus}, language = {en} } @phdthesis{Constantino2013, author = {Constantino, Jennifer Anne}, title = {Characterization of Novel Magnetic Materials: Ultra-Thin (Ga,Mn)As and Epitaxial-Growth MnSi Thin Films}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-90578}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2013}, abstract = {The study of magnetic phases in spintronic materials is crucial to both our fundamental understanding of magnetic interactions and for finding new effects for future applications. In this thesis, we study the basic electrical and magnetic transport properties of both epitaxially-grown MnSi thin films, a helimagnetic metal only starting to be developed within our group, and parabolic-doped ultra-thin (Ga,Mn)As layers for future studies and applications.}, subject = {Galliumarsenid}, language = {en} } @phdthesis{Banaszek2013, author = {Banaszek, Agnes}, title = {Dual Antigen-Restricted Complementation of a Two-Part Trispecific Antibody for Targeted Immunotherapy of Blood Cancer}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-90174}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2013}, abstract = {Cancer cells frequently escape from immune surveillance by down-regulating two important components of the immune defence: antigen-presenting MHC and costimulatory molecules. Therefore several novel anti-tumour compounds that aim to assist the immune system in recognising and fighting cancer are currently under development. Recombinant bispecific antibodies represent one group of such novel therapeutics. They target two different antigens and recruit cytotoxic effector cells to tumour cells. For cancer immunotherapy, bispecific T cell-engaging antibodies are already well characterised. These antibodies target a tumour-associated antigen and CD3ε, the constant molecule of the T cell receptor complex. On the one hand, this study presents the development of a bispecific antibody targeting CD3ε and the rhabdomyosarcoma-associated fetal acetylcholine receptor. On the other hand, it describes a novel two-part trispecific antibody format for the treatment of leukaemia and other haematological malignancies in the context of haematopoietic stem cell transplantation (HSCT). For HSCT, an HLA-identical donor is preferred, but very rarely available. In an HLA-mismatched setting, the HLA disparity could be exploited for targeted cancer treatment. In the present study, a two-part trispecific HLA-A2 × CD45 × CD3 antibody was developed for potential cases in which the patient is HLA-A2-positive, but the donor is not. This holds true for about half the cases in Germany, since HLA-A2 is the most common HLA molecule found here. Combinatorial targeting of HLA-A2 and the leucocyte-common antigen CD45 allows for highly specific dual-antigen restricted tumour targeting. More precisely, two single-chain antibody constructs were developed: i) a single-chain variable fragment (scFv) specific for HLA-A2, and ii) a scFv against CD45, both linked to the VL and the VH domain of a CD3ε-specific antibody, respectively. It turned out that, after the concomitant binding of these constructs to the same HLA-A2- and CD45-expressing cell, the unpaired variable domains of a CD3ε-specific antibody assembled to a functional scFv. In a therapeutic situation, this assembly should exclusively occur on the recipient's blood cancer cells, leading to T cell-mediated cancer cell destruction. In this way, a relapse of disease might be prevented, and standard therapy (radiation and chemotherapy) might be omitted. For both approaches, the antibody constructs were periplasmically expressed in E. coli, purified via His tag, and biochemically characterised. Their binding to the respective targets was proven by flow cytometry. The stimulatory properties of the antibodies were assayed by measuring IL-2 release after incubation with T cells and antigen-expressing target cells. Both the bispecific antibody against rhabdomyosarcoma and the assembled trispecific antibody against blood cancer mediated T-cell activation in a concentration-dependent manner at nanomolar concentrations. For the trispecific antibody, this effect indeed proved to be dual antigen-restricted, as it could be blocked by prior incubation of either HLA-A2- or CD45-specific scFv and did not occur on single-positive (CD45+) or double-negative (HLA-A2- CD45-) target cells. Furthermore, antibodies from both approaches recruited T cells for tumour cell destruction in vitro.}, subject = {Immuntherapie}, language = {en} } @phdthesis{Duerrbeck2013, author = {D{\"u}rrbeck, Nina}, title = {Photoinduced Charge-Transfer Processes in Redox Cascades based on Triarylamine Donors and the Perchlorinated Triphenylmethyl Radical Acceptor}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-90078}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2013}, abstract = {In this work, a series of redox cascades was synthesised and investigated in view of their photophysical and electrochemical properties. The cascades are based on a perchlorinated triphenylmethyl radical acceptor and two triarylamine donors. Absorption spectra showed the presence of charge-transfer bands in the NIR range of the spectra, which pointed to the population of a charge-transfer state between a triarylamine donor and the radical acceptor. A weak to moderate emission in the NIR range of the spectra was observed for all compounds in cyclohexane. Spectroelectrochemical measurements were used to investigate the characteristic spectral features of the oxidised and reduced species of all compounds. Transient absorption spectra in the ns- and fs-time regime revealed an additional hole transfer in the cascades between the triarylamine donors, resulting in a charge-separated state. Charge-separation and -recombination processes were found to be located in the ps-time regime.}, subject = {Ladungstransfer}, language = {en} } @phdthesis{Rauh2013, author = {Rauh, Daniel}, title = {Impact of Charge Carrier Density and Trap States on the Open Circuit Voltage and the Polaron Recombination in Organic Solar Cells}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-90083}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2013}, abstract = {The focus of this work is studying recombination mechanisms occurring in organic solar cells, as well as their impact on one of their most important parameters — the open circuit voltage Voc. Firstly, the relationship between Voc and the respective charge carrier density n in the active layer under open circuit conditions is analyzed. Therefor, a model after Shockley for the open circuit voltage is used, whose validity is proven with the aid of fits to the measured data. Thereby, it is emphasized that the equation is only valid under special conditions. In the used reference system P3HT:PC61BM the fits are in agreement with the measurement data only in the range of high temperatures (150 - 300 K), where Voc increases linearly with decreasing temperature. At lower temperatures (50 - 150 K), the experiment shows a saturation of Voc. This saturation cannot be explained with the model by the measured falling charge carrier density with decreasing temperatures. In this temperature range Voc is not directly related to the intrinsic properties of the active layer. Voc saturation is due to injection energy barriers at the contacts, which is ascertained by macroscopic simulations. Furthermore, it is observed that Voc in the case of saturation is equivalent to the so-called built-in potential. The difference between the built-in potential and the energy gap corresponds thereby to the sum of the energy barriers at both contacts. With the knowledge of the Voc(n) dependency for not contact limited solar cells, it is possible to investigate the recombination mechanisms of charge carriers in the active layer. For Langevin recombination the recombination rate is Rn2 (recombination order RO = 2), for Shockley-Read-Hall (SRH) Rn1 (RO=1); in various publications RO higher than two is reported with two main explanations. 1: Trap states for charge carriers exist in the respective separated phases, i.e. electrons in the acceptor phase and holes in the donor phase, which leads to a delayed recombination of the charge carriers at the interface of both phases and finally to an apparent recombination order higher than 2. 2: The enhanced R(n) dependency is attributed to the so called recombination prefactor, which again is dependent from n dependent mobility µ. It is shown that for the system P3HT:PC61BM at room temperature the µ(n) dependency does nearly completely explain the higher RO but not at lower temperatures which in this case supports the first explanation. In the material system PTB7:PC71BM the increased RO cannot be explained by the µ(n) dependency even at room temperature. To support the importance of trap states in combination with a phase separation for the explanation of the enhanced RO, additional trap states were incorporated in the solar cells to investigate their influence on the recombination mechanisms. To achieve this, P3HT:PC61BM solar cells were exposed to synthetic air (in the dark and under illumination) or TCNQ was added in small concentrations to the active layer which act as electron traps. For the oxygen degraded solar cell the recombination order is determined by a combination of open Voc-transients and Voc(n) measurements. Thereby, a continuous increase of the recombination order from 2.4 to more than 5 is observed with higher degradation times. By the evaluation of the ideality factor it can be shown that the impact of SRH recombination is increasing with higher trap concentration in relation to Langevin recombination. A similar picture is revealed for solar cells with TCNQ as extrinsic trap states. Finally, a phenomenon called s-shaped IV-curves is investigated, which can sometimes occur for solar cells under illumination. As course of this a reduced surface recombination velocity can be found. Experimentally, the solar cells were fabricated using a special plasma treatment of the ITO contact. The measured IV-curves of such solar cells are reproduced by macroscopic simulations, where the surface recombination velocity is reduced. Hereby, it has to be distinguished between the surface recombination of majority and minority charge carriers at the respective contacts. The theory can be experimentally confirmed by illumination level dependent IV-curves as well as short circuit current density and open circuit voltage transients.}, subject = {Organische Solarzelle}, language = {en} } @phdthesis{Wagenpfahl2013, author = {Wagenpfahl, Alexander Johannes}, title = {Numerical simulations on limitations and optimization strategies of organic solar cells}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-90119}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2013}, abstract = {Continuously increasing energy prices have considerably influenced the cost of living over the last decades. At the same time increasingly extreme weather conditions, drought-filled summers as well as autumns and winters with heavier rainfall and worsening storms have been reported. These are possibly the harbingers of the expected approaching global climate change. Considering the depletability of fossil energy sources and a rising distrust in nuclear power, investigations into new and innovative renewable energy sources are necessary to prepare for the coming future. In addition to wind, hydro and biomass technologies, electricity generated by the direct conversion of incident sunlight is one of the most promising approaches. Since the syntheses and detailed studies of organic semiconducting polymers and fullerenes were intensified, a new kind of solar cell fabrication became conceivable. In addition to classical vacuum deposition techniques, organic cells were now also able to be processed from a solution, even on flexible substrates like plastic, fabric or paper. An organic solar cell represents a complex electrical device influenced for instance by light interference for charge carrier generation. Also charge carrier recombination and transport mechanisms are important to its performance. In accordance to Coulomb interaction, this results in a specific distribution of the charge carriers and the electric field, which finally yield the measured current-voltage characteristics. Changes of certain parameters result in a complex response in the investigated device due to interactions between the physical processes. Consequently, it is necessary to find a way to generally predict the response of such a device to temperature changes for example. In this work, a numerical, one-dimensional simulation has been developed based on the drift-diffusion equations for electrons, holes and excitons. The generation and recombination rates of the single species are defined according to a detailed balance approach. The Coulomb interaction between the single charge carriers is considered through the Poisson equation. An analytically non-solvable differential equation system is consequently set-up. With numerical approaches, valid solutions describing the macroscopic processes in organic solar cells can be found. An additional optical simulation is used to determine the spatially resolved charge carrier generation rates due to interference. Concepts regarding organic semiconductors and solar cells are introduced in the first part of this work. All chapters are based on previous ones and logically outline the basic physics, device architectures, models of charge carrier generation and recombination as well as the mathematic and numerical approaches to obtain valid simulation results. In the second part, the simulation is used to elaborate issues of current interest in organic solar cell research. This includes a basic understanding of how the open circuit voltage is generated and which processes limit its value. S-shaped current-voltage characteristics are explained assigning finite surface recombination velocities at metal electrodes piling-up local space charges. The power conversion efficiency is identified as a trade-off between charge carrier accumulation and charge extraction. This leads to an optimum of the power conversion efficiency at moderate to high charge carrier mobilities. Differences between recombination rates determined by different interpretations of identical experimental results are assigned to a spatially inhomogeneous recombination, relevant for almost all low mobility semiconductor devices.}, subject = {Organische Solarzelle}, language = {en} } @phdthesis{EngelhardtgebChristiansen2013, author = {Engelhardt [geb. Christiansen], Frauke}, title = {Synaptic Connectivity in the Mushroom Body Calyx of Drosophila melanogaster}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-85058}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2013}, abstract = {Learning and memory is considered to require synaptic plasticity at presynaptic specializations of neurons. Kenyon cells are the intrinsic neurons of the primary olfactory learning center in the brain of arthropods - the mushroom body neuropils. An olfactory mushroom body memory trace is supposed to be located at the presynapses of Kenyon cells. In the calyx, a sub-compartment of the mushroom bodies, Kenyon cell dendrites receive olfactory input provided via projection neurons. Their output synapses, however, were thought to reside exclusively along their axonal projections outside the calyx, in the mushroom body lobes. By means of high-resolution imaging and with novel transgenic tools, we showed that the calyx of the fruit fly Drosophila melanogaster also comprised Kenyon cell presynapses. At these presynapses, synaptic vesicles were present, which were capable of neurotransmitter release upon stimulation. In addition, the newly identified Kenyon cell presynapses shared similarities with most other presynapses: their active zones, the sites of vesicle fusion, contained the proteins Bruchpilot and Syd-1. These proteins are part of the cytomatrix at the active zone, a scaffold controlling synaptic vesicle endo- and exocytosis. Kenyon cell presynapses were present in γ- and α/β-type KCs but not in α/β-type Kenyon cells. The newly identified Kenyon cell derived presynapses in the calyx are candidate sites for an olfactory associative memory trace. We hypothesize that, as in mammals, recurrent neuronal activity might operate for memory retrieval in the fly olfactory system. Moreover, we present evidence for structural synaptic plasticity in the mushroom body calyx. This is the first demonstration of synaptic plasticity in the central nervous system of Drosophila melanogaster. The volume of the mushroom body calyx can change according to changes in the environment. Also size and numbers of microglomeruli - sub-structures of the calyx, at which projection neurons contact Kenyon cells - can change. We investigated the synapses within the microglomeruli in detail by using new transgenic tools for visualizing presynaptic active zones and postsynaptic densities. Here, we could show, by disruption of the projection neuron - Kenyon cell circuit, that synapses of microglomeruli were subject to activity-dependent synaptic plasticity. Projection neurons that could not generate action potentials compensated their functional limitation by increasing the number of active zones per microglomerulus. Moreover, they built more and enlarged microglomeruli. Our data provide clear evidence for an activity-induced, structural synaptic plasticity as well as for the activity-induced reorganization of the olfactory circuitry in the mushroom body calyx.}, subject = {Taufliege}, language = {en} } @phdthesis{Luecking2013, author = {L{\"u}cking, Thomas}, title = {Acquisition Behavior in High-Technology Industries - The Role of Product Diversification, Technological Change, and IP Protection}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-85065}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2013}, abstract = {Frequent acquisition activities in high-technology industries are due to the intense competition, driven by short product life cycles, more complex products/services and prevalent network effects. This dissertation theoretically analyzes the circumstances leading to technology-driven acquisitions and empirically tests these within a clearly defined market scenario.}, subject = {Mergers and Acquisitions}, language = {en} } @phdthesis{Andlauer2013, author = {Andlauer, Till Felix Malte}, title = {Structural and Functional Diversity of Synapses in the Drosophila CNS}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-85018}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2013}, abstract = {Large-scale anatomical and functional analyses of the connectivity in both invertebrate and mammalian brains have gained intense attention in recent years. At the same time, the understanding of synapses on a molecular level still lacks behind. We have only begun to unravel the basic mechanisms of how the most important synaptic proteins regulate release and reception of neurotransmitter molecules, as well as changes of synaptic strength. Furthermore, little is known regarding the stoichiometry of presynaptic proteins at different synapses within an organism. An assessment of these characteristics would certainly promote our comprehension of the properties of different synapse types. Presynaptic proteins directly influence, for example, the probability of neurotransmitter release as well as mechanisms for short-term plasticity. We have examined the strength of expression of several presynaptic proteins at different synapse types in the central nervous system of Drosophila melanogaster using immunohistochemistry. Clear differences in the relative abundances of the proteins were obvious on different levels: variations in staining intensities appeared from the neuropil to the synaptic level. In order to quantify these differences, we have developed a ratiometric analysis of antibody stainings. By application of this ratiometric method, we could assign average ratios of presynaptic proteins to different synapse populations in two central relays of the olfactory pathway. In this manner, synapse types could be characterized by distinct fingerprints of presynaptic protein ratios. Subsequently, we used the method for the analysis of aberrant situations: we reduced levels of Bruchpilot, a major presynaptic protein, and ablated different synapse or cell types. Evoked changes of ratio fingerprints were proportional to the modifications we had induced in the system. Thus, such ratio signatures are well suited for the characterization of synapses. In order to contribute to our understanding of both the molecular composition and the function of synapses, we also characterized a novel synaptic protein. This protein, Drep-2, is a member of the Dff family of regulators of apoptosis. We generated drep-2 mutants, which did not show an obvious misregulation of apoptosis. By contrast, Drep-2 was found to be a neuronal protein, highly enriched for example at postsynaptic receptor fields of the input synapses of the major learning centre of insects, the mushroom bodies. Flies mutant for drep-2 were viable but lived shorter than wildtypes. Basic synaptic transmission at both peripheral and central synapses was in normal ranges. However, drep-2 mutants showed a number of deficiencies in adaptive behaviours: adult flies were locomotor hyperactive and hypersensitive towards ethanol-induced sedation. Moreover, the mutant animals were heavily impaired in associative learning. In aversive olfactory conditioning, drep-2 mutants formed neither short-term nor anaesthesia-sensitive memories. We could demonstrate that Drep-2 is required in mushroom body intrinsic neurons for normal olfactory learning. Furthermore, odour-evoked calcium transients in these neurons, a prerequisite for learning, were reduced in drep-2 mutants. The impairment of the mutants in olfactory learning could be fully rescued by pharmacological application of an agonist to metabotropic glutamate receptors (mGluRs). Quantitative mass spectrometry of Drep-2 complexes revealed that the protein is associated with a large number of translational repressors, among them the fragile X mental retardation protein FMRP. FMRP inhibits mGluR-mediated protein synthesis. Lack of this protein causes the fragile X syndrome, which constitutes the most frequent monogenic cause of autism. Examination of the performance of drep-2 mutants in courtship conditioning showed that the animals were deficient in both short- and long-term memory. Drep-2 mutants share these phenotypes with fmrp and mGluR mutants. Interestingly, drep-2; fmrp double mutants exhibited normal memory. Thus, we propose a model in which Drep-2 antagonizes FMRP in the regulation of mGluR-dependent protein synthesis. Our hypothesis is supported by the observation that impairments in synaptic plasticity can arise if mGluR signalling is imbalanced in either direction. We suggest that Drep-2 helps in establishing this balance.}, subject = {Taufliege}, language = {en} } @phdthesis{Asthana2013, author = {Asthana, Manish}, title = {Associative learning - Genetic modulation of extinction and reconsolidation and the effects of transcranial Direct Current Stimulation (tDCS)}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-84158}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2013}, abstract = {Scientific surveys provide sufficient evidence that anxiety disorders are one of the most common psy-chiatric disorders in the world. The lifetime prevalence rate of anxiety disorder is 28.8\% (Kessler, et al., 2005). The most widely studied anxiety disorders are as follows panic disorder (PD), post-traumatic stress disorder (PTSD), obsessive-compulsive disorder (OCD), social phobia (or social anxiety disorder), specific phobias, and generalized anxiety disorder (GAD). (NIMH Article, 2009). Classical conditioning is the stable paradigm used from the last one century to understand the neurobi-ology of fear learning. Neurobiological mechanism of fear learning is well documented with the condi-tioning studies. In the therapy of anxiety disorders, exposure based therapies are known to be the most effective approaches. Flooding is a form of exposure therapy in which a participant is exposed to the fear situation and kept in that situation until their fear dissipates. The exposure therapy is based on the phenomena of extinction; this means that a conditioned response diminishes if the conditioned stimulus (CS) is repeatedly presented without an unconditioned stimulus (UCS). One problem with extinction as well as with exposure-based therapy is the problem of fear return (for e.g. renewal, spontaneous recov-ery and reinstatement) after successful extinction. Therefore, extinction does not delete the fear memory trace. It has been well documented that memory processes can be modulated or disrupted using several sci-entific paradigms such as behavioral (for e.g. exposure therapy), pharmacological (for e.g. drug manipu-lation), non-invasive stimulation (for e.g. non-invasive stimulation such as electroconvulsive shock (ECS), transcranial magnetic stimulation (TMS), transcranial direct current stimulation (tDCS), etc. However, modulation of memory processes after reactivation or via non-invasive stimulation is still not clear, which is the focus of the current study. In addition, study of genetic variant suggests that genetic differences play a vital role in the psychiatric disorder especially in fear learning. Hence, it is also one of the concerns of the current dissertation to investigate the interaction between gene and reconsolidation of memory. With respect to fear-conditioning, there are three findings in the current dissertation, which are as fol-lows: (i) In the first study we investigated that non-invasive weak electrical stimulation interferes with the consolidation process and disrupts the fear consolidation to attain stable form. This might offer an effective treatment in the pathological memories, for e.g. PTSD, PD, etc. (ii) In the second study we demonstrated whether a brief single presentation of the CS will inhibit the fear recovery. Like earlier studies we also found that reactivation followed by reconsolidation douses fear return. Attenuation of fear recovery was observed in the reminder group compared to the no-reminder group. (iii) Finally, in our third study we found a statistically significant role of brain derived neurotrophic factor (BDNF) polymorphism in reconsolidation. Results of the third study affirm the involvement of BDNF variants (Met vs. Val) in the modulation of conditioned fear memory after its reactivation. In summary, we were able to show in the current thesis modulation of associative learning and recon-solidation via transcranial direct current stimulation and genetic polymorphism.}, subject = {Konditionierung}, language = {en} } @phdthesis{Schul2013, author = {Schul, Daniela}, title = {Spatio-temporal investigation and quantitative analysis of the BMP signaling pathway}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-84224}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2013}, abstract = {Bone Morphogenetic Proteins (BMPs) are key regulators for a lot of diverse cellular processes. During embryonic development these proteins act as morphogens and play a crucial role particularly in organogenesis. BMPs have a direct impact on distinct cellular fates by means of concentration-gradients in the developing embryos. Using the diverse signaling input information within the embryo due to the gradient, the cells transduce the varying extracellular information into distinct gene expression profiles and cell fate decisions. Furthermore, BMP proteins bear important functions in adult organisms like tissue homeostasis or regeneration. In contrast to TGF-ß signaling, currently only little is known about how cells decode and quantify incoming BMP signals. There is poor knowledge about the quantitative relationships between signal input, transducing molecules, their states and location, and finally their ability to incorporate graded systemic inputs and produce qualitative responses. A key requirement for efficient pathway modulation is the complete comprehension of this signaling network on a quantitative level as the BMP signaling pathway, just like many other signaling pathways, is a major target for medicative interference. I therefore at first studied the subcellular distribution of Smad1, which is the main signal transducing protein of the BMP signaling pathway, in a quantitative manner and in response to various types and levels of stimuli in murine c2c12 cells. Results indicate that the subcellular localization of Smad1 is not dependent on the initial BMP input. Surprisingly, only the phospho-Smad1 level is proportionally associated to ligand concentration. Furthermore, the activated transducer proteins were entirely located in the nucleus. Besides the subcellular localization of Smad1, I have analyzed the gene expression profile induced by BMP signaling. Therefore, I examined two endogenous immediate early BMP targets as well as the expression of the stably transgenic Gaussia Luciferase. Interestingly, the results of these independent experimental setups and read-outs suggest oscillating target gene expression. The amplitudes of the oscillations showed a precise concentration-dependence for continuous and transient stimulation. Additionally, even short-time stimulation of 15' activates oscillating gene-expression pulses that are detectable for at least 30h post-stimulation. Only treatment with a BMP type I receptor kinase inhibitor leads to the complete abolishment of the target gene expression. This indicated that target gene expression oscillations depend directly on BMP type I receptor kinase activity.}, subject = {Knochen-Morphogenese-Proteine}, language = {en} } @phdthesis{Li2013, author = {Li, Xiaoli}, title = {Functional analyses of ES cell pluripotency by inducible knockdown of the Polycomb group protein Pcgf6}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-84015}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2013}, abstract = {Polycomb group (PcG) proteins are chromatin modifiers involved in heritable gene repression. Two main PcG complexes have been characterized: Polycomb repressive complex (PRC) 2 is involved in the initiation of gene silencing, whereas PRC1 participates in the stable maintenance of gene repression. Pcgf4 (Polycomb group protein, Bmi1) is one of the most studied PRC1 members with essential functions for embryonic development and adult stem cell self renewal. In embryonic stem cells (ES cells), Pcgf4 is poorly expressed while its paralogs (Pcgf1, Pcgf2, Pcgf3, Pcgf5 and Pcgf6) are expressed at higher levels. The relevance of the Pcgf paralog Pcgf6 for the maintenance of ESC pluripotency has not been addressed so far. My analyses revealed that Pcgf6 was the most expressed Pcgf paralog in undifferentiated ES cells. When ES cells differentiated, gene expression of Pcgf6 strongly declined. To investigate the functions of Pcgf6 in ES cells, we established a doxycycline (dox) inducible shRNA-targeted knockdown system according to publications by Seibler et al. (Seibler et al. 2005; Seibler et al. 2007). Following dox-induced knockdown (KD) of Pcgf6, we observed decreased ES cell colony formation. In parallel, gene expression of pluripotency markers Oct4, Nanog and Sox2 was reduced upon dox-treatment, wheras the expression of mesoderm genes such as T (Brachyury) were up-regulated. Further, microarray analysis revealed de-repression of several spermatogenesis-specic genes upon Pcgf6-KD, suggesting that Pcgf6 may play a role during spermatogenesis. Upon in vitro differentiation, Pcgf6-KD ES cells showed increased hemangioblast formation, paralleled by increased hematopoietic development. In summary, results of this study suggest that Pcgf6 is involved in maintaining ES cell identity by repressing lineage-specific gene expression in undifferentiated ES cells.}, subject = {Embryonale Stammzelle}, language = {en} } @phdthesis{Rudolf2013, author = {Rudolf, Ronald}, title = {Transcriptional Regulation of and by NFATc1 in Lymphocytes}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-83993}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2013}, abstract = {The transcription factor NFATc1 has been shown to regulate the activation and differentiation of T-cells and B-cells, of DCs and megakaryocytes. Dysregulation of NFAT signaling was shown to be associated with the generation of autoimmune diseases, malignant transformation and the development of cancer [71]. The primary goal of this work was to gain insights on Nfatc1 induction and regulation in lymphocytes and to find new direct NFATc1 target genes. Three new BAC -transgenic reporter mouse strains (tgNfatc1/Egfp, tgNfatc1/DE1 and tgNfatc1/DE2) were applied to analyze Nfatc1 induction and regulation in primary murine B- and T-cells. As a result, we were able to show the persistent requirement of immunoreceptor-signaling for constant Nfatc1 induction, particularly, for NFATc1/αA expression. Furthermore, we showed that NF-κB inducing agents, such as LPS, CpG or CD40 receptor engagement, in combination with primary receptor-signals, positively contributed to Nfact1 induction in B-cells [137]. We sought to establish a new system which could help to identify direct NFATc1 target genes by means of ChIP and NGS in genom-wide approaches. We were able to successfully generate a new BAC-transgene encoding a biotinylatable short isoform of NFATc1, which is currently injected into mice oocyte at the TFM in Mainz. In addition, in vivo biotinylatable NFATc1-isoforms were cloned and stably expressed in the murine B-cell lymphoma line WEHI-231. The successful use of these cells stably overexpressing either the short NFATc1/αA or the long NFATc1/βC isoform along with the bacterial BirA biotin ligase was confirmed by intracellular stainings, FACS analysis, confocal microscopy and protein IP. By NGS, we detected 2185 genes which are specifically controlled by NFATc1/αA, and 1306 genes which are exclusively controlled by NFATc1/βC. This shows that the Nfatc1 locus encodes "two genes" which exhibit alternate, in part opposite functions. Studies on the induction of apoptosis and cell-death revealed opposed roles for the highly inducible short isoform NFATc1/αA and the constantly expressed long isoform NFATc1/βC. These findings were confirmed by whole transcriptome-sequencing performed with cells overexpressing NFATc1/αA and NFATc1/βC. Several thousand genes were found to be significantly altered in their expression profile, preferentially genes involved in apoptosis and PCD for NFATc1/βC or genes involved in transcriptional regulation and cell-cycle processes for NFATc1/αA. In addition we were able to perform ChIP-seq for NFATc1/αA and NFATc1/βC in an ab-independent approach. We found potential new target-sites, but further studies will have to address this ambitious goal in the future. In individual ChIP assays, we showed direct binding of NFATc1/αA and NFATc1/βC to the Prdm1 and Aicda promoter regions which are individually controlled by the NFATc1 isoforms.}, subject = {Lymphozyt}, language = {en} } @phdthesis{Lee2013, author = {Lee, Wook}, title = {Computational study on the catalytic mechanism of mtKasA}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-83989}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2013}, abstract = {Das Enzym KasA spielt eine entscheidende Rolle in der Biosynthese von Mykols{\"a}uren, den Bausteinen der Zellw{\"a}nde von Mycobacteriumtuberculosis. Dessen essentielle Notwendigkeit zeigt sich bei Abwesenheit von KasA in einer Zelllyse (Aufl{\"o}sung von Zellen) bei Mycobacteriumtuberculosis. Durch seine Bedeutung f{\"u}r Mycobacteriumtuberculosis, dem Erreger von Tuberkulose und damit der zweith{\"a}ufigsten Todesursache durch Infektionskrankheiten, stellt KasA ein vielversprechendes Ziel f{\"u}r die Entwicklung neuer Medikamente gegen Tuberkulose dar. Durch das Auftreten von extensiv resistenten St{\"a}mmen welche die meisten bekannten Antibiotika zur Bek{\"a}mpfung von Tuberkulose inaktivieren wird es dringend notwendig neue Medikamente gegen Tuberkulose zu entwickeln. In Kapitel 3.1 wird der Protonierungszustand der katalytischen Reste im Ruhezustand untersucht. F{\"u}r diese Untersuchungen wurden Free Energy Perturbation (FEP) Rechnungen und MD Simulationen verwendet. Die Ergebnisse zeigten, dass der zwitterionische Zustand am wahrscheinlichsten ist. Um diese Aussage mit weiteren handfesten Daten zu untermauern wurden Potential(hyper)fl{\"a}chen (PES) f{\"u}r den Protonentransfer zwischen neutralen und zwitterionischen Zustand mit Hilfe von QM/MM Methoden berechnet. Durch die starke Abh{\"a}ngigkeit der QM/MM Optimierung von der Ausgangsstruktur war es nicht m{\"o}glich konsistente Ergebnisse f{\"u}r diese Berechnungen zu bekommen. Um dieses Problem zu umgehen wurde ein auf QM/MM basierendes Umbrella Sampling mit Semiempirischen Methoden (RM1) durchgef{\"u}hrt. Die sich daraus ergebende PMF Fl{\"a}che zeigt das der zwitterionische Zustand stabiler ist als der neutrale Zustand. In Kapitel 3.2 wurde der Protonierungszustand der entsprechenden Reste im Acyl-Enzym Zustand untersucht. Im Unterschied zu anderen katalytischen Resten ist der Protonierungszustand von His311 ist nicht eindeutig im Acyl-Enzym Zustand und es ergeben sich aus den verschiedenen Protonierungszust{\"a}nden verschiedene Decarboxylierungsmechanismen. Um den wahrscheinlichsten Protonierungszustand bez{\"u}glich der freien Energie zu bestimmen wurden FEP Rechnungen durchgef{\"u}hrt. Die Ergebnisse zeigen, dass der pKa Wert an Nδ betr{\"a}chtlich durch die Enzymumgebung verringert wird, w{\"a}hrend dies f{\"u}r Nε nicht der Fall ist. Zus{\"a}tzlich dazu wurden die PMF Profile f{\"u}r den Protonentransfer zwischen Lys340 und Glu354 mit der QM/MM basierten Umbrella Sampling Methode berechnet. Die Ergebnisse zeigen, dass das Lys340/Glu354 Paar eher neutral als ionisch ist, wenn His311 an Nε protoniert ist. Ein relativ hoher ionischer Charakter des Lys340/Glu354 Paares, wenn His311 doppelt protoniert ist, gibt einen wertvollen Einblick in die Rolle welche das Lys340/Glu354 Paar beim verschieben des Protonierungszustandes von Nδ zu Nε im His311 nach dem Acyltransferschritt spielt. Die Ergebnisse zeigen, dass His311 neutral und an Nε protoniert ist. Ebenso ist das Lys340/Glu354 Paar neutral im Acyl-Enzym Zustand. Diese berechneten Ergebnisse f{\"u}hren zu dem Schluss, dass die Decarboxylierung durch ein Oxyanion Loch erleichtert wird welches aus zwei katalytischen Histidin Resten besteht. In Kapitel 3.3 wurde der Protonierungszustand der katalytischen Reste im Ruhezustand erneut untersucht da eine aktuelle Benchmarkstudie zeigte, dass die verwendete Semiempirische Methode (RM1) in Kapitel 3.1 dazu tendiert die Stabilisation des zwitterionischen Zustandes zu {\"u}bersch{\"a}tzen. Auch wurde in Kapitel 3.1 das Lys340/Glu354 Paar als rein ionisch angesehen, w{\"a}hrend sich in Kapitel 3.2 herausstellte, dass es sich um eine Mischung aus neutralen und ionischen Charakter handelt. Die neuen Untersuchungen beinhalten eine gr{\"o}ßere QM Region inklusive des Lys340/Glu354 Paares. Der daf{\"u}r verwendete BLYP/6-31G** Ansatz ist ausreichend akkurat f{\"u}r die aktuelle Fragestellung, was durch Vergleichsrechnungen bewiesen wurde. Die neuen Ergebnisse der QM/MM MD und FEP Rechnungen deuten an, dass die katalytischen Reste im Ruhezustand h{\"o}chst wahrscheinlich neutral vorliegen. Dies wiederum f{\"u}hrt zu der Frage wie KasA aktiviert werden kann um die katalytische Reaktion zu initiieren. Auf der Basis der Ergebnisse der MD Simulationen und FEP Rechnungen f{\"u}r den His311Ala Mutanten in Kapitel 3.1 stellten wir die Hypothese auf, dass die offene Konformation von Phe404 die Aktivierung der katalytischen Reste durch die (Aus)bildung einer starken Wasserstoffbindung einleitet. Die QM/MM MD Simulation best{\"a}tigt dass diese Aktivierung der katalytischen Reste durch die offene Konformation des Phe404 bewerkstelligt werden kann. Das entsprechende auf Kraftfeld basierende PMF Profil zeigt auch, dass dieser Konformationswechsel energetisch realisierbar ist. Die Verteilung der hydrophilen und hydrophoben Reste in der Malonyl Bindungstasche in Verbindung mit unseren berechneten Ergebnissen geben einen Einblick in den detaillierten}, subject = {Tuberkelbakterium}, language = {en} } @phdthesis{Scholz2013, author = {Scholz, Markus}, title = {Energy-Dispersive NEXAFS: A Novel Tool for the Investigation of Intermolecular Interaction and Structural Phase Dynamics}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-83839}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2013}, abstract = {In the context of this thesis, the novel method soft X-ray energy-dispersive NEXAFS spectroscopy was explored and utilized to investigate intermolecular coupling and post-growth processes with a temporal resolution of seconds. 1,4,5,8- naphthalene tetracarboxylic acid dianhydride (NTCDA)multilayer films were the chosen model system for these investigations. The core hole-electron correlation in coherently coupled molecules was studied by means of energy-dispersive near-edge X-ray absorption fine-structure spectroscopy. A transient phase was found which exists during the transition between a disordered condensed phase and the bulk structure. This phase is characterized by distinct changes in the spectral line shape and energetic position of the X-ray absorption signal at the C K-edge. The findings were explained with the help of theoretical models based on the coupling of transition dipole moments, which are well established for optically excited systems. In consequence, the experimental results provides evidence for a core hole-electron pair delocalized over several molecules. Furthermore, the structure formation of NTCDA multilayer films on Ag(111) surfaces was investigated. With time-resolved and energy-dispersive NEXAFS experiments the intensity evolution in s- and p-polarization showed a very characteristic behavior. By combining these findings with the results of time-dependent photoemission measurements, several sub-processes were identified in the post- growth behavior. Upon annealing, the amorphous but preferentially flat-lying molecules flip into an upright orientation. After that follows a phase characterized by strong intermolecular coupling. Finally, three-dimensional islands are established. Employing the Kolmogorov-Johnson-Mehl-Avrami model, the activation energies of the sub-processes were determined.}, subject = {Organisches Molek{\"u}l}, language = {en} } @phdthesis{Foertig2013, author = {F{\"o}rtig, Alexander}, title = {Recombination Dynamics in Organic Solar Cells}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-83895}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2013}, abstract = {Neben herk{\"o}mmlichen, konventionellen anorganischen Solarzellen — haupts{\"a}chlich auf Silizium basierend — ist die Organische Photovoltaik (OPV) auf dem besten Wege in naher Zukunft eine kosteng{\"u}nstige, umweltfreundliche, komplement{\"a}re Technolgie darzustellen. Die Produktionskosten, die Lebenszeit der Solarzellen sowie deren Wirkungsgrad m{\"u}ssen dabei weiter optimiert werden, um einen Markteintritt der OPV zu erm{\"o}glichen. Die vorliegende Arbeit befasst sich mit der Effizienz organischer Solarzellen und deren Limitierung durch die Rekombination von Ladungstr{\"a}gern. Um funktionsf{\"a}hige Zellen zu untersuchen, werden zeitaufgel{\"o}ste Experimente wie die Messung der transienten Photospannung (TPV), des transienten Photostroms (TPC), die Ladungsextraktion (CE) sowie die time delayed collection field (TDCF) Methode angewandt. Untersucht werden sowohl fl{\"u}ssig prozessierte als auch aufgedampfte Proben, unterschiedliche Materialzusammensetzungen und verschiedene Probengeometrien. Das Standardmaterialsystem der OPV, P3HT:PC61BM, wird bei verschiedenen emperaturen und Beleuchtungsst{\"a}rken auf die Lebenszeit und Dichte der photogenerierten Ladungstr{\"a}ger {\"u}berpr{\"u}ft. F{\"u}r den Fall spannungsunabh{\"a}ngiger Generation von Ladungstr{\"a}gern zeigt sich die Anwendbarkeit der Shockley-Gleichung auf organische Solarzellen. Des Weiteren wird ein konsistentes Modell erl{\"a}utert, welches den Idealtit{\"a}tsfaktor direkt mit der Rekombination von freien mit gefangenen, exponentiell verteilten Ladungstr{\"a}gern verkn{\"u}pft. Ein Ansatz, bekannt unter der Bezeichung j=V Rekonstruktion, erm{\"o}glicht es, den leistungslimitierenden Verlustmechanismus in unbehandelten und thermisch geheizten P3HT:PC61BM Solarzellen zu identifizieren. Dieses Verf ahren, welches TPV, CE und TDCF Messungen beinhaltet, wird auf Proben basierend auf dem neuartigen, low-band gap Polymer PTB7 in Verbindung mit dem Fulleren PC71BM ausgeweitet. W{\"a}hrend in der Zelle hergestellt aus reinem Chlorbenzol betr{\"a}chtliche geminale wie nichtgeminale Verluste zu beobachten sind, erleichtert die Zugabe eines L{\"o}sungsmittelzusatzes die Polaronenpaartrennung, was zu einer starken Reduktion geminaler Verluste f{\"u}hrt. In einer Kooperation mit dem IMEC Institut in Leuven, werden abschließend die beiden bedeutensten Probenarchitekturen organischer Solarzellen, die planare und die Misch{\"u}bergang Struktur, jeweils basierend auf CuPC und C60, bez{\"u}glich nichtgeminaler Rekombination und Ladungstr{\"a}gerverteilung miteinander verglichen. Neben den beiden experimentellen Techniken um TPV und CE werden makroskopische Simulationen herangezogen, um den Ursprung unterschiedlichen Voc vs. Lichtintensit{\"a}t-Verhaltens zu erkl{\"a}ren.}, subject = {Organische Solarzelle}, language = {en} } @phdthesis{Niewidok2013, author = {Niewidok, Natalia}, title = {Modulation of radiosensitivity of human tumor and normal cells by inhibition of heat shock proteins Hsp90 and Hsp70}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-78728}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2013}, abstract = {Cancer is the leading cause of death in economically developed countries (Jemal et al. 2011). Heat shock protein 90 can be a promising target in cancer treatment as it is responsible for sustaining protein homeostasis in every human cell by folding and activating of more than 200 client proteins (Picard et al. 2002). Apart from strong anti-tumor activities in vitro (Smith et al. 2005) and in vivo (Supko et al. 1995), Hsp90 inhibitors can sensitize tumor cells to radiation (Bisht et al. 2003, Stingl et al.2010, Schilling et al. 2011). Recently, our group showed the radiosensitizing potential of novel Hsp90 inhibitors: NVP-AUY922 and NVP-BEP800 (Stingl et al. 2010). The drugs were administered to cancer cell lines of different origin 24 hours before irradiation (drug-first treatment). In the present work, we explored the effects of a schedule other than drug-first treatment on A549 and SNB19 tumor cell lines. Cell samples were treated with either NVP-AUY922 or NVP-BEP800 one hour before IR and kept in the drug-containing medium for up to 48 hours (simultaneous drug-IR treatment). Our findings showed that depending on the tumor cell line, the combination of Hsp90 inhibition and irradiation may result in radiosensitization or apoptosis of cancer cell lines. It is advised to adjust the sequence of treatment, involving Hsp90 inhibition and irradiation, on the basis of the genetic background of tumor cells. Before entering the clinic, novel therapeutics should be tested on non-malignant tissue to exclude their possible toxic activities. Thus, we applied the simultaneous drug-IR treatment on human skin fibroblast strains. This work showed that Hsp90 inhibitors NVP-AUY922 and NVP-BEP800 preferentially sensitize tumor cells to radiation, whereas the effect(s) on normal fibroblasts was much weaker. The exact mechanisms underlying the Hsp90 inhibitors' selectivity towards malignant cells remain to be elucidated. It was shown previously that the administration of Hsp90 inhibitors, including NVP-AUY922 and NVP-BEP800, induces heat shock response (Niewidok et al. 2012). Heat shock response triggers the up-regulation of Hsp70, which, due to its strong anti-apoptotic properties, might be responsible for reducing the effects of Hsp90 inhibition. The transfection with Hsp70 siRNA suppressed the NVP-AUY922-induced over-expression of the target protein. However, on the long-term scale, it did not influence the radiosensitivity of A549 and SNB19 cells. To summarize, the use of siRNA proved that Hsp70 inhibition could be used to support Hsp90 inhibition on the short-term scale. Therefore, for future works, more potent and stable methods of Hsp70 inhibition are needed. This thesis presented the effects induced by two novel Hsp90 inhibitors NVP-AUY922 and NVP-BEP800, in combination with irradiation in tumor cell lines as well as in normal skin fibroblasts. Hsp70 pre-silencing was tested as a method for improving radiosensitizing potential of NVP-AUY922. These results support the use of NVP-AUY922 and NVP-BEP800 in combination with irradiation in future clinical trials.}, subject = {Tumorzelle}, language = {en} } @phdthesis{Ebel2013, author = {Ebel, Lars Frederik}, title = {Molecular Beam Epitaxy and Characterization of Ferromagnetic Bulk and Thin (Ga,Mn)As Layers/Heterostructures}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-83942}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2013}, abstract = {Die vorgelegte Arbeit untersucht den ferromagnetischen Halbleiter (Ga,Mn)As mit seinen komplexen Eigenschaften im Hinblick auf die Optimierung der Materialeigenschaften sehr d{\"u}nner (4 nm) (Ga,Mn)As Schichten, welche mit der Technologie der Molekularstrahlepitaxie (MBE) hergestellt wurden. Zuerst werden die strukturellen, ferromagnetischen und elektrischen Eigenschaften von (Ga,Mn)As vorgestellt. Die Einfl{\"u}sse von Punktdefekten, Grenzfl{\"a}chen- und Oberfl{\"a}chen-Effekten auf dicke und d{\"u}nne (Ga,Mn)As Schichten werden mit Hilfe von vereinfachten, selbstkonsistenten Berechnungen der Bandkantenverl{\"a}ufe diskutiert. Der Experimental-Teil ist in drei Teile unterteilt: Der erste Teil untersucht den Einfluss der epitaktischen Wachstumsbedingungen auf die elektrischen und magnetischen Eigenschaften von dicken (70 nm) (Ga,Mn)As Schichten. Der zweite Teil f{\"u}hrt ein alternatives, parabolisches Mn-Dotierprofil mit effektiver Schichtdicke von 4 nm ein im Vergleich zu einer gleich d{\"u}nnen Schicht mit homogenem Mn-Dotierprofil. Es konnten einerseits verbesserte Eigenschaften dieser parabolischen Schicht erreicht werden, anderseits sind die magnetischen und elektrischen Eigenschaften vergleichbar zu dicken (Ga,Mn)As Schichten mit gleichem Mn-Gehalt von 4\%. MBE Wachstumsbedingungen f{\"u}r (Ga,Mn)As Schichten mit parabolischem Mn-Dotierprofil und verringertem nominellem Mn-Gehalt von 2.5\% wurden ebenfalls untersucht. Ein schmales Wachstumsfenster wurde hierbei ermittelt, in dem die Tieftemperatur-Eigenschaften verbessert sind. Der letzte Teil der Arbeit pr{\"a}sentiert eine Anwendung der magnetischen Anisotropiekontrolle einer dicken (Ga,Mn)As Schicht.}, subject = {Molekularstrahlepitaxie}, language = {en} } @phdthesis{Pohl2013, author = {Pohl, Christoph}, title = {Silicon Based MBE of Manganese-Silicide and Silicon-Suboxide}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-83757}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2013}, abstract = {The present thesis deals with the fabrication, optimization of growth process and characterization of silicon based materials with molecular beam epitaxy. Two material systems are investigated in the course of this work: silicon/silicon suboxide multilayer structures and mono manganese silicide thin films. Mono manganese silicide (MnSi) is grown on Si(111) substrates with an hydrogen passivated surface, that is prepared by wet chemical processes. The growth start is performed by deposition of an amorphous Mn wetting layer that is subsequently annealed to form a MnSi seed layer on which the MnSi molecular beam epitaxy (MBE) is achieved. An amorphous or a crystalline Si cap layer is deposited onto the MnSi film to finalize the growth process and protect the sample from oxidation. With Raman spectroscopy it is shown that the crystalline cap layer is in fact single crystalline silicon. Results of x-ray diffraction and Raman spectroscopy confirm the growth of mono manganese silicide in contrast to other existing manganese silicide phases. In addition, in-plane and out-of-plane residual strain, and twinning of the MnSi thin film is detected with x-ray diffraction of symmetric and asymmetric reflections. Orientation between the Si substrate and the MnSi film is determined with the parallel lattice planes MnSi(210) and Si(511). Transport measurements show a T^2 dependence of the resistivity below 30K and metallic behavior above, a magneto resistance of 0.9\% and an unusual memory like effect of the resistance for an in-plane magnetic field sweep measurement. Silicon/Silicon suboxide (SiOx) multilayer structures are grown on Si(100) by interrupting the Si growth and oxidizing the surface with molecular oxygen. During oxidation the RHEED pattern changes from the Si(2x1) reconstruction to an amorphous pattern. When silicon growth is resumed a spotty RHEED pattern emerges, indicating a rough, three dimensional surface. The rough surface can be smoothed out with Si growth at substrate temperatures between 600°C and 700°C. Measurements with transmission electron microscopy show that a silicon suboxide layer of about 1nm embedded in single crystalline silicon is formed with the procedure. Multilayer structures are achieved by repeating the oxidation procedure when the Si spacer layer has a smooth and flat surface. The oxygen content of the suboxide layers can be varied between 7.6\% and 26.8\%, as determined with secondary ion mass spectrometry and custom-built simulations models for the x-ray diffraction. Structural stability of the multilayer structures is investigated by x-ray diffraction before and after rapid thermal annealing. For temperatures up to 1000°C the multilayer structures show no modification of the SiOx layer in x-ray diffraction.}, subject = {Molekularstrahlepitaxie}, language = {en} } @phdthesis{Vidal2013, author = {Vidal, Marie}, title = {b-adrenergic receptors and Erk1/2-mediated cardiac hypertrophy}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-83671}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2013}, abstract = {Chronische Aktivierung von b-Adrenorezeptoren (b-ARs) durch Katecholamine ist ein Stimulus f{\"u}r kardiale Hypertrophie und Herzinsuffizienz. Ebenso f{\"u}hrt die Expression von b1-ARs oder Gas-Proteinen in genetisch modifizierten M{\"a}usen zu Hypertrophie und Herzinsuffizienz. Allerdings f{\"u}hrt die direkte Aktivierung dem Gas nachgeschalteten Komponenten des b-adrenergen Signalwegs wie z.B. die Aktivierung der Adenylylcyclase (AC) oder der Proteinkinase A (PKA) nicht im signifikanten Ausmaß zur Herzhypertrophie. Diese Ergebnisse deuten darauf hin, dass zus{\"a}tzlich zu dem klassischen Signalweg, auch weitere durch Gas-Proteine aktivierte Komponenten in die b-adrenerg vermittelte Hypertrophieentwicklung involviert sind. Interessanterweise wurde vor kurzem ein hypertropher Signalweg beschrieben, der eine direkte Involvierung von Gbg-Untereinheiten bei der Induktion von Herzhypertrophie durch die extrazellul{\"a}r-regulierten Kinasen 1 und 2 (ERK1/2) zeigt: Nach Aktivierung Gaq-gekoppelter Rezeptoren binden Gbg-Untereinheiten an die aktivierte Raf/Mek/Erk Kaskade. Die Bindung der freigesetzten Gbg-Untereinheiten an Erk1/2 f{\"u}hrt zu einer Autophosphorylierung von Erk1/2 an Threonin 188 (bzw. Thr208 in Erk1; im folgenden ErkThr188-Phosphorylierung genannt), welche f{\"u}r die Vermittlung kardialer Hypertrophie verantwortlich ist. In dieser Arbeit konnte nun gezeigt werden, dass auch die Aktivierung von b-ARs in M{\"a}usen sowie von isolierten Kardiomyozyten zur Induktion von ErkThr188-Phosphorylierung f{\"u}hrt. Dar{\"u}berhinaus f{\"u}hrte die {\"U}berexpression von Erk2 Mutanten (Erk2T188S und Erk2T188A), die nicht an Threonin 188 phosphoryliert werden k{\"o}nnen, zu einer deutlich reduzierten Hypertrophieantwort von Kardiomyozyten auf Isoproterenol. Auch die kardiale Expression der Erk2T188S Mutante im M{\"a}usen verminderte die Hypertrophieantwort auf eine 2-w{\"o}chige Isoproterenol-Behandlung deutlich: Die linksventrikul{\"a}re Wanddicke, aber auch interstitielle Fibrose und Herzinsuffizienzmarker wie z.B. BNP waren signifikant reduziert. Weiterhin konnte in dieser Arbeit gezeigt werden, dass tats{\"a}chlich ein Zusammenspiel von Ga und Gbg-vermittelten Signalen zur Induktion von ErkThr188-Phosphorylierung und damit zur Induktion von b-adrenerg vermittelter Hypertrophie notwendig ist. W{\"a}hrend die Hemmung von Gbg-Signalen mit dem C-Terminus der GRK2 oder die Hemmung von Adenylylzyklase eine ErkThr188-Phosphorylierung und eine Hypertrophieantwort nach Isoprenalingabe effektiv reduzierten, f{\"u}hrt die alleinige Aktivierung von Adenylylzyklase nicht zu einer Hypertrophieantwort. Diese Ergebnisse k{\"o}nnten bei der Entwicklung neuer m{\"o}glicher therapeutischen Strategien zur Therapie b-adrenerg induzierter Herzhypertrophie und Herzinsuffizienz helfen.}, subject = {Adrenerger Rezeptor}, language = {en} } @phdthesis{Ruff2013, author = {Ruff, Andreas}, title = {On the importance of electronic correlations in potassium-doped organic semiconductors}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-83635}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2013}, abstract = {The present thesis is concerned with the impact of alkali metal-doping on the electronic structure of semiconducting organic thin films. The organic molecular systems which have been studied are the polycyclic aromatic hydrocarbons picene, pentacene, and coronene. Motivated by reports about exceptional behavior like superconductivity and electronic correlations of their alkali metal-doped compounds, high quality films fabricated from the above named molecules have been studied. The electronic structure of the pristine materials and their doped compounds has been investigated using photoelectron spectroscopy. Core level and valence band studies of undoped films yield excellent photoemission spectra agreeing with or even outperforming previously reported data from the literature. Alkali metal-doping manifests itself in a uniform manner in the electronic structure for all probed samples: Opposed to reports from the literature about metallicity and even superconductivity in alkali metal-doped picene, pentacene, and coronene, all films exhibit insulating nature with an energy gap of the order of one electron-volt. Remarkably, this is independent of the doping concentration and the type of dopant, i.e., potassium, cesium, or sodium. Based on the interplay between narrow bandwidths in organic semiconductors and sufficiently high on-molecule Coulomb repulsion, the non-metallicity is attributed to the strong influence of electronic correlations leading to the formation of a Mott insulator. In the case of picene, this is consolidated by calculations using a combination of density functional theory and dynamical mean-field theory. Beyond the extensive considerations regarding electronic correlations, further intriguing aspects have been observed. The deposition of thin picene films leads to the formation of a non-equilibrium situation between substrate and film surface. Here, the establishment of a homogeneous chemical potential is hampered due to the only weak van der Waals-interactions between the molecular layers in the films. Consequently, spectral weight is measurable above the reference chemical potential in photoemission. Furthermore, it has been found that the acceptance of additional electrons in pentacene is limited. While picene and coronene are able to host up to three extra electrons, in pentacene the limit is already reached for one electron. Finally, further extrinsic effects, coming along with alkali metal-doping, have been scrutinized. The oxidation of potassium atoms induced by the reaction with molecular oxygen in the residual gas of the ultra-high vacuum system turned out to significantly influence the electronic structure of alkali metal-doped picene and coronene. Moreover, also the applied X-ray and UV irradiation caused a certain impact on the photoemission spectra. Surprisingly, both effects did not play a role in the studies of potassium-doped pentacene.}, subject = {Organischer Halbleiter}, language = {en} } @phdthesis{Devine2013, author = {Devine, Eric}, title = {Increased removal of protein bound uremic toxins through reversible modification of the ionic strength during hemodiafiltration}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-83583}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2013}, abstract = {A large number of metabolic waste products accumulate in the blood of patients with renal failure. Since these solutes have deleterious effects on the biological functions, they are called uremic toxins and have been classified in three groups: 1) small water soluble solutes (MW < 500 Da), 2) small solutes with known protein binding (MW < 500 Da), and 3) middle molecules (500 Da < MW < 60 kDa). Protein bound uremic toxins are poorly removed by conventional hemodialysis treatments because of their high protein binding and high distribution volume. The prototypical protein bound uremic toxins indoxyl sulfate (IS) and p-cresyl sulfate (pCS) are associated with the progression of chronic kidney disease, cardiovascular outcomes, and mortality of patients on maintenance hemodialysis. Furthermore, these two compounds are bound to albumin, the main plasma protein, via electrostatic and/or Van-der-Waals forces. The aim of the present thesis was to develop a dialysis strategy, based on the reversible modification of the ionic strength in the blood stream by increasing the sodium chloride (NaCl) concentration, in order to enhance the removal of protein bound substances, such as IS and pCS, with the ultimate goal to improve clinical patient outcomes. Enhancing the NaCl concentration ([NaCl]) in both human normal and uremic plasma was efficient to reduce the protein bound fraction of both IS and pCS by reducing their binding affinity to albumin. Increasing the ionic strength was feasible during modified pre-dilution hemodiafiltration (HDF) by increasing the [NaCl] in the substitution fluid. The NaCl excess was adequately removed within the hemodialyzer. This method was effective to increase the removal rate of both protein bound uremic toxins. Its ex vivo hemocompatibility, however, was limited by the osmotic shock induced by the high [NaCl] in the substituate. Therefore, modified pre-dilution HDF was further iterated by introducing a second serial cartridge, named the serial dialyzers (SDial) setup. This setting was validated for feasibility, hemocompatibility, and toxin removal efficiency. A better hemocompatibility at similar efficacy was obtained with the SDial setup compared with the modified pre-dilution HDF. Both methods were finally tested in an animal sheep model of dialysis to verify biocompatibility. Low hemolysis and no activation of both the complement and the coagulation systems were observed when increasing the [NaCl] in blood up to 0.45 and 0.60 M with the modified pre-dilution HDF and the SDial setup, respectively. In conclusion, the two dialysis methods developed to transitory enhance the ionic strength in blood demonstrated adequate biocompatibility and improved the removal of protein bound uremic toxins by decreasing their protein bound fraction. The concepts require follow-on clinical trials to assess their in vivo efficacy and their impact on long-term clinical outcomes.}, subject = {H{\"a}modiafiltration}, language = {en} } @phdthesis{Ngwa2013, author = {Ngwa, Che Julius}, title = {The mosquito midgut-specific stages of the malaria parasite as targets for transmission blocking interventions}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-83594}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2013}, abstract = {Die Tropenkrankheit Malaria, wird durch eine Infektion mit einzelligen Parasiten der Gattung Plasmodium verursacht und durch den Stich der weiblichen Anopheles-M{\"u}cke von Mensch zu Mensch verbreitet. Dabei kann eine erfolgreiche {\"U}bertragung des Parasiten auf den Menschen nur dann stattfinden, wenn der Parasit seine sexuelle Entwicklungsphase im Mitteldarm der M{\"u}cke erfolgreich durchl{\"a}uft. Ziel dieser Arbeit war es daher, die Wechselwirkungen des Malariaparasiten im Mitteldarm der M{\"u}cke in Hinblick auf die Identifizierung m{\"o}glicher neuer transmissionsblockierender Strategien zu untersuchen. Der Zweck von transmissionsblockierende Strategien ist es, der Verbreitung der Malaria durch die M{\"u}cke entgegenzuwirken, indem die Entwicklung des Parasiten in der M{\"u}cke unterbunden und dadurch der Lebenszyklus des Parasiten unterbrochen wird. Der Schwerpunkt der vorliegenden Arbeit lag auf insgesamt drei Aspekten. Der erste Aspekt der Arbeit befasste sich mit der Wechselwirkung zwischen dem Para-siten und der mikrobiellen Darmflora der M{\"u}cke. Dabei sollte der m{\"o}gliche Einfluss des Parasiten auf die Darmflora untersucht werden und weiterf{\"u}hrend die potentielle Verwendung von Darmbakterien als Vehikel f{\"u}r die Herstellung paratransgener M{\"u}cken erforscht werden. Vergleichende16S-rRNA- und DGGE-Analysen an der Darmflora des asiatischen Malariavektors Anopheles stephensi zeigten eine deutliche Reduktion der mikrobiellen Diversit{\"a}t w{\"a}hrend der Entwicklung vom Ei zur adulten M{\"u}cke. Zudem konnte das gram-negative Bakterium Elizabethkingia meningoseptica, das sich stadien- und generations{\"u}bergreifend verbreitet, als dominante Darmspezies bei im Labor aufgezogenen weiblichen und m{\"a}nnlichen An. stephensi festgestellt werden. Die Dominanz von E. meningoseptica wurde zudem nicht durch die Aufnahme von infiziertem Blut oder einer ver{\"a}nderten Nahrung beeinflusst. F{\"u}r die Studien wurde sowohl der humanpathogene Parasit P. falciparum als auch der Nagermalariaerreger P. berghei verwendet. Weiterf{\"u}hrende Versuche zeigten, dass Extrakte von E. meningoseptica antibakterielle, antifungale und antiplasmodiale Aktivit{\"a}ten aufwiesen, die ein m{\"o}glicher Grund f{\"u}r die Dominanz dieser Spezies im Mitteldarm des Vektors waren. Isolate von E. meningoseptica sind im Labor kultivierbar; dadurch stellt das Bakterium einen potentiellen Kandidaten zur Generierung von paratransgenen Anopheles-M{\"u}cken dar. Ein zweites Ziel dieser Arbeit war es, m{\"o}gliche Unterschiede in der Genexpression von P. falciparum darzustellen, die in den ersten 30 Minuten nach dessen {\"U}bertragung auf die M{\"u}cke erfolgen. Dies hatte zum einen zum Zweck, die durch den Wirtswechsel hervorgerufenen Genregulationen besser zu verstehen, und bot zum anderen die M{\"o}glichkeit, neue Proteine zu identifizieren, die als potentielle transmissionsblockierende Ziele genutzt werden k{\"o}nnen. Mittels supression substractive hybridization (SSH) konnten insgesamt 126 Gene identifiziert werden, deren Expression sich w{\"a}hrend der Gametogenese ver{\"a}ndert. Die identifizierten Gene konnten einer Vielzahl von putativen Funktionen wie zum Beispiel in der Signaltransduktion (17,5\%), im Zellzyklus (14,3\%) oder im Zytoskelett (8,7\%) zugeordnet werden. Des Weiteren wurden 7,9\% der Gene eine Funktion in der Proteastase und 6,4\% in metabolischen Prozessen zugeordnet. 12,7\% der Gene kodierten f{\"u}r zelloberfl{\"a}chenassoziierte Proteine. 11,9\% der Gene hatten anderen Funktionen, w{\"a}hrend 20\% der Gene keine putative Funktion zugeordnet werden konnte. Etwa 40\% der identifizierten Genprodukte waren bisher nicht in Proteomstudien nachgewiesen worden. In weiterf{\"u}hrenden Analysen wurden 34 Gene aus jeder ontologischen Gruppe ausgew{\"a}hlt und deren Expressionsver{\"a}nderung per quantitativer real time RT-PCR im Detail untersucht. F{\"u}r 29 Gene konnte dabei eine Transkriptexpression in Gametozyten nachgewiesen werden. Zudem wiesen 20 Gene eine erh{\"o}hte Expression in Gametozyten im Vergleich asexuellen Stadien auf. Insgesamt zeigten 8 Gene besonders hohe Transkriptlevel in aktivierten Gametozyten, was auf eine Funktion dieser Proteine w{\"a}hrend der {\"U}bertragung des Parasiten auf die M{\"u}cke hindeutet und diese somit potentielle Angriffspunkte f{\"u}r transmissionsblockierende Strategien darstellen k{\"o}nnten. Im letzten Teil dieser Arbeit stand die Untersuchung verschiedener antimikrobieller Substanzen in Bezug auf ihre transmissionsblockierenden Eigenschaften im Vordergrund. Die Substanzen waren entweder direkt aus der H{\"a}molymphe verschiedener Insekten isoliert oder rekombinant in transgenem Tabak exprimiert worden. Dabei wurden die rekombinanten Peptide so ausgew{\"a}hlt, dass sie entweder gegen die Mitteldarmstadien des Parasiten wirken oder m{\"u}ckenspezifische Rezeptoren blockieren, die der Parasit f{\"u}r seine weitere Entwicklung ben{\"o}tigt. Dabei konnte gezeigt werden, dass das antimikrobielle Molek{\"u}l Harmonin, ein Abwehrmolek{\"u}l aus der H{\"a}molymphe des asiatischen Marienk{\"a}fers Harmonia axyridis, antiplasmodiale als auch transmissions-blockierende Eigenschaften besitzt. Harmonin stellt daher eine potentielle Leitstruktur f{\"u}r die Entwicklung neuer Malariawirkstoffe dar}, subject = {Malariam{\"u}cke}, language = {en} } @phdthesis{Kaufmann2013, author = {Kaufmann, Tobias}, title = {Brain-computer interfaces based on event-related potentials: toward fast, reliable and easy-to-use communication systems for people with neurodegenerative disease}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-83441}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2013}, abstract = {Objective: Brain Computer Interfaces (BCI) provide a muscle independent interaction channel making them particularly valuable for individuals with severe motor impairment. Thus, different BCI systems and applications have been proposed as assistive technology (AT) solutions for such patients. The most prominent system for communication utilizes event-related potentials (ERP) obtained from the electroencephalogram (EEG) to allow for communication on a character-by-character basis. Yet in their current state of technology, daily life use cases of such systems are rare. In addition to the high EEG preparation effort, one of the main reasons is the low information throughput compared to other existing AT solutions. Furthermore, when testing BCI systems in patients, a performance drop is usually observed compared to healthy users. Patients often display a low signal-to-noise ratio of the recorded EEG and detection of brain responses may be aggravated due to internally (e.g. spasm) or externally induced artifacts (e.g. from ventilation devices). Consequently, practical BCI systems need to cope with mani-fold inter-individual differences. Whilst these high demands lead to increasing complexity of the technology, daily life use of BCI systems requires straightforward setup including an easy-to-use graphical user interface that nonprofessionals can handle without expert support. Research questions of this thesis: This dissertation project aimed at bringing forward BCI technology toward a possible integration into end-users' daily life. Four basic research questions were addressed: (1) Can we identify performance predictors so that we can provide users with individual BCI solutions without the need of multiple, demanding testing sessions? (2) Can we provide complex BCI technology in an automated, user-friendly and easy-to-use manner, so that BCIs can be used without expert support at end-users' homes? (3) How can we account for and improve the low information transfer rates as compared to other existing assistive technology solutions? (4) How can we prevent the performance drop often seen when bringing BCI technology that was tested in healthy users to those with severe motor impairment? Results and discussion: (1) Heart rate variability (HRV) as an index of inhibitory control (i.e. the ability to allocate attention resources and inhibit distracting stimuli) was significantly related to ERP-BCI performance and accounted for almost 26\% of variance. HRV is easy to assess from short heartbeat recordings and may thus serve as a performance predictor for ERP-BCIs. Due to missing software solutions for appropriate processing of artifacts in heartbeat data (electrocardiogram and inter-beat interval data), our own tool was developed that is available free of charge. To date, more than 100 researchers worldwide have requested the tool. Recently, a new version was developed and released together with a website (www.artiifact.de). (2) Furthermore, a study of this thesis demonstrated that BCI technology can be incorporated into easy-to-use software, including auto-calibration and predictive text entry. Na{\"i}ve, healthy nonprofessionals were able to control the software without expert support and successfully spelled words using the auto-calibrated BCI. They reported that software handling was straightforward and that they would be able to explain the system to others. However, future research is required to study transfer of the results to patient samples. (3) The commonly used ERP-BCI paradigm was significantly improved. Instead of simply highlighting visually displayed characters as is usually done, pictures of famous faces were used as stimulus material. As a result, specific brain potentials involved in face recognition and face processing were elicited. The event-related EEG thus displayed an increased signal-to-noise ratio, which facilitated the detection of ERPs extremely well. Consequently, BCI performance was significantly increased. (4) The good results of this new face-flashing paradigm achieved with healthy participants transferred well to users with neurodegenerative disease. Using a face paradigm boosted information throughput. Importantly, two users who were highly inefficient with the commonly used paradigm displayed high accuracy when exposed to the face paradigm. The increased signal-to-noise ratio of the recorded EEG thus helped them to overcome their BCI inefficiency. Significance: The presented work at hand (1) successfully identified a physiological predictor of ERP-BCI performance, (2) proved the technology ready to be operated by na{\"i}ve nonprofessionals without expert support, (3) significantly improved the commonly used spelling paradigm and (4) thereby displayed a way to effectively prevent BCI inefficiency in patients with neurodegenerative disease. Additionally, missing software solutions for appropriate handling of artifacts in heartbeat data encouraged development of our own software tool that is available to the research community free of charge. In sum, this thesis significantly improved current BCI technology and enhanced our understanding of physiological correlates of BCI performance.}, subject = {Gehirn-Computer-Schnittstelle}, language = {en} } @phdthesis{Link2013, author = {Link, Jana}, title = {The role of meiotic nuclear envelope components in chromosome dynamics and meiotic progression}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-83540}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2013}, abstract = {Meiosis is the specialised cell division which produces haploid germ cells, capable of developing into fertile gametes, from diploid progenitor cells. During meiosis, chromosomes undergo strictly regulated and strongly conserved dynamic processes, at the beginning of which the telomeres are actively tethered and intimately attached to the nuclear envelope (NE). The attached telomeres are then moved within the NE through cytoskeletal forces to cluster within a restricted region, forming the highly conserved bouquet stage. Subsequently, the bouquet is released simultaneously to the completion of the synaptonemal complex assembly tightly linking homologous chromosome pairs together. In combination these processes are essential for the successful completion of meiosis. Because the meiotic NE serves as a platform for telomere attachment and movement it can be assumed to be critically involved in these events crucial for fertility. However, the precise roles of many meiotic NE proteins in the attachment and movement of telomeres still remain elusive. Therefore, it was the aim of this thesis to investigate the functions of two mammalian meiotic NE components in telomere attachment and dynamics. The first part of this thesis is concerned with the meiosis-specific lamin C2. Lamin C2 is the only A-type lamin expressed during meiosis and has in previous studies shown to feature altered meiosis-specific properties, clearly distinguishing it from somatic lamins. Because lamin C2 is enriched at sites of telomere attachment, exhibits a high mobility within the nuclear lamina and influences NE integrity, it has been postulated that it may locally increase NE flexibility to allow efficient meiotic telomere movement. Therefore, possible functions of lamin C2 in the movement of attached telomeres were investigated in this thesis by studying the bouquet formation and release of pubertal mice specifically lacking lamin C2. This revealed that lamin C2 deficient mice show a delayed bouquet release, leading to severe defects in the synaptic pairing of homologous chromosomes, which in turn results in infertility of the males. Therefore, the efficient repositioning of attached meiotic telomeres, facilitated by lamin C2, seems essential for completing meiosis. The second part of this thesis focuses on the protein complex responsible for the attachment of meiotic telomeres to the NE and their coupling to the cytoskeleton. The so-called LINC complex is composed of SUN domain proteins in the inner nuclear membrane interacting with KASH domain proteins of the outer nuclear membrane. In previous studies it had been shown that SUN1, SUN2 and KASH5 localise to the attached meiotic telomeres. Regarding the meiotic role of SUN2, however, contradicting results have recently been discussed, showing the need for further investigations. Using an available SUN1 deficient mouse strain, this thesis was able to show that SUN2 is sufficient for telomere attachment per se although telomere attachment is impaired in SUN1 deficient mice leading to infertility. It is also demonstrated that SUN2 forms a functional LINC complex together with KASH5 to mediate this telomere attachment. This LINC complex in the absence of SUN1 is able to move attached telomeres into a bouquet-like cluster formation. Therefore, this demonstrates that SUN2 is involved in the functional attachment and movement of meiotic telomeres. In summary, this thesis has shown SUN2 and the meiotic nuclear lamina to be directly involved in or essential for the highly conserved attachment and movement of telomeres, making them critical for a successful meiosis. The meiotic NE is therefore in this thesis demonstrated to be a determinant of mammalian fertility.}, subject = {Meiose}, language = {en} } @misc{Forster2013, type = {Master Thesis}, author = {Forster, Johannes}, title = {Mathematical Modeling of Complex Fluids}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-83533}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2013}, abstract = {This thesis gives an overview over mathematical modeling of complex fluids with the discussion of underlying mechanical principles, the introduction of the energetic variational framework, and examples and applications. The purpose is to present a formal energetic variational treatment of energies corresponding to the models of physical phenomena and to derive PDEs for the complex fluid systems. The advantages of this approach over force-based modeling are, e.g., that for complex systems energy terms can be established in a relatively easy way, that force components within a system are not counted twice, and that this approach can naturally combine effects on different scales. We follow a lecture of Professor Dr. Chun Liu from Penn State University, USA, on complex fluids which he gave at the University of Wuerzburg during his Giovanni Prodi professorship in summer 2012. We elaborate on this lecture and consider also parts of his work and publications, and substantially extend the lecture by own calculations and arguments (for papers including an overview over the energetic variational treatment see [HKL10], [Liu11] and references therein).}, subject = {Variationsrechnung}, language = {en} } @phdthesis{Araragi2013, author = {Araragi, Naozumi}, title = {Electrophysiological investigation of two animal models for emotional disorders - serotonin transporter knockout mice and tryptophan hydroxylase 2 knockout mice}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-83265}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2013}, abstract = {Serotonin (5-HT) has been implicated in the regulation of emotions as well as in its pathological states, such as anxiety disorders and depression. Mice with targeted deletion of genes encoding various mediators of central serotonergic neurotransmission therefore provides a powerful tool in understanding contributions of such mediators to homeostatic mechanisms as well as to the development of human emotional disorders. Within this thesis a battery of electrophysiological recordings were conducted in the dorsal raphe nucleus (DRN) and the hippocampus of two murine knockout lines with deficient serotonergic systems. Serotonin transporter knockout mice (5-Htt KO), which lack protein responsible for reuptake of 5-HT from the extracellular space and tryptophan hydroxylase 2 knockout (Tph2 KO) mice, which lack the gene encoding the neuronal 5-HT-synthesising enzyme. First, 5-HT1A receptor-mediated autoinhibition of serotonergic neuron firing in the DRN was assessed using the loose-seal cell-attached configuration. Stimulation of 5-HT1A receptors by a selective agonist, R-8-hydroxy-2-(di-n-propylamino)tetralin (R-8-OH-DPAT), showed a mild sensitisation and a marked desensitisation of these receptors in Tph2 KO and 5-Htt KO mice, respectively. While application of tryptophan, a precursor of 5-HT and a substrate of Tph2, did not cause autoinhibition in Tph2 KO mice due to the lack of endogenously produced 5-HT, data from 5-Htt KO mice as well as heterozygous mice of both KO mice lines demonstrated the presence of autoinhibitory mechanisms as normal as seen in wildtype (WT) controls. When the Tph2-dependent step in the 5-HT synthesis pathway was bypassed by application of 5-hydroxytryptophan (5-HTP), serotonergic neurons of both Tph2 KO and 5-Htt KO mice showed decrease in firing rates at lower concentrations of 5-HTP than in WT controls. Elevated responsiveness of serotonergic neurons from Tph2 KO mice correspond to mild sensitisation of 5-HT1A receptors, while responses from 5-Htt KO mice suggest that excess levels of extracellular 5-HT, created by the lack of 5-Htt, stimulates 5-HT1A receptors strong enough to overcome desensitisation of these receptors. Second, the whole-cell patch clamp recording data from serotonergic neurons in the DRN showed no differences in basic electrophysiological properties between Tph2 KO and WT mice, except lower membrane resistances of neurons from KO mice. Moreover, the whole-cell patch clamp recording from CA1 pyramidal neurons in the hippocampus of 5-Htt KO mice showed increased conductance both at a steady state and at action potential generation. Lastly, magnitude of long-term potentiation (LTP) induced by the Schaffer collateral/commissural pathway stimulation in the ventral hippocampus showed no differences among Tph2 KO, 5-Htt KO, and WT counterparts. Taken together, lack and excess of extracellular 5-HT caused sensitisation and desensitisation of autoinhibitory 5-HT1A receptors, respectively. However, this may not directly translate to the level of autoinhibitory regulation of serotonergic neuron firing when these receptors are stimulated by endogenously synthesised 5-HT. In general, KO mice studied here showed an astonishing level of resilience to genetic manipulations of the central serotonergic system, maintaining overall electrophysiological properties and normal LTP inducibility. This may further suggest existence of as-yet-unknown compensatory mechanisms buffering potential alterations induced by genetic manipulations.}, subject = {Serotonin}, language = {en} } @phdthesis{Dreykluft2013, author = {Dreykluft, Angela}, title = {The PD-1/B7-H1 Pathway in a Transgenic Mouse Model for Spontaneous Autoimmune Neuroinflammation: Immunological Studies on Devic B7-H1-/- Mice}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-83288}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2013}, abstract = {Multiple sclerosis is an autoimmune disease of the central nervous system characterized by inflammatory, demyelinating lesions and neuronal death. Formerly regarded as a variant of MS, neuromyelitis optica (NMO)/Devic's disease is now recognized as a distinct neurological disorder exhibiting characteristic inflammatory and demyelinated foci in the optic nerves and the spinal cord sparing the brain. With the introduction of the double-transgenic "Devic mouse" model featuring spontaneous, adjuvant-free incidence of autoimmune neuroinflammation due to the interaction of transgenic MOG-specific T and B cells, a promising tool was found for the analysis of factors triggering or preventing autoimmunity. The co-inhibitory molecule B7-H1 has been proposed to contribute to the maintenance of peripheral tolerance and to confine autoimmune inflammatory damage via the PD-1/B7-H1 pathway. Compared to Devic B7-H1+/+ mice, Devic B7-H1-/- mice developed clinical symptoms with a remarkably higher incidence rate and faster kinetics emphasized by deteriorated disease courses and a nearly quadrupled mortality rate. Remarkably enlarged immune-cell accumulation in the CNS of Devic B7-H1-/- mice, in particular of activated MOG-specific CD4+ T cells, correlated with the more severe clinical features. Our studies showed that the CNS not only was the major site of myelin-specific CD4+ T-cell activation but also that B7-H1 expression within the target organ significantly influenced T-cell activation and differentiation levels. Analysis at disease maximum revealed augmented accumulation of MOG-specific CD4+ T cells in the peripheral lymphoid organs of Devic B7-H1-/- mice partly due to increased T-cell proliferation rates. Transgenic MOG-specific B cells of Devic B7-H1-/- mice activated MOG-specific CD4+ T cells more efficiently than B cells of Devic B7-H1+/+ mice. This observation indicated a relevant immune-modulating role of B7-H1 on APCs (antigen-presenting cells) in this mouse model. We also assumed altered thymic selection processes to be involved in increased peripheral CD4+ T-cell numbers of Devic B7-H1-/- mice as we found more thymocytes expressing the transgenic MOG-specific T-cell receptor (TCR). Moreover, preliminary in vitro experiments hinted on an enhanced survival of TCRMOG-transgenic CD4+ T cells of Devic B7-H1-/- mice; a mechanism that might as well have led to higher peripheral T-cell accumulation. Elevated levels of MOG-specific CD4+ T cells in the periphery of Devic B7-H1-/- mice could have entailed the higher quantities in the CNS. However, mechanisms such as CNS-specific proliferation and/or apoptosis/survival could also have contributed. This should be addressed in future investigations. Judging from in vitro migration assays and adoptive transfer experiments on RAG-1-/- recipient mice, migratory behavior of MOG-specific CD4+ T cells of Devic B7-H1+/+ and Devic B7-H1-/- mice seemed not to differ. However, enhanced expression of the transmigration-relevant integrin LFA-1 on CD4+ T cells in young symptom-free Devic B7-H1-/- mice might hint on temporally differently pronounced transmigration capacities during the disease course. Moreover, we attributed the earlier conversion of CD4+ T cells into Th1 effector cells in Devic B7-H1-/- mice during the initiation phase to the lack of co-inhibitory signaling via PD-1/B7-H1 possibly leading to an accelerated disease onset. Full blown autoimmune inflammatory processes could have masked these slight effects of B7-H1 in the clinical phase. Accordingly, at peak of the disease, Th1 and Th17 effector functions of peripheral CD4+ T cells were comparable in both mouse groups. Moreover, judging from titers of MOG-specific IgG1 and IgM antibodies, alterations in humoral immunity were not detected. Therefore, clinical differences could not be explained by altered T-cell or B-cell effector functions at disease maximum. B7-H1 rather seemed to take inhibitory effect in the periphery during the initiation phase only and consistently within the target organ by parenchymal expression. Our observations indicate that B7-H1 plays a relevant role in the regulation of T-cell responses in this mouse model for spontaneous CNS autoimmunity. By exerting immune-modulating effects in the preclinical as well as the clinical phase of the disease, B7-H1 contributed to the confinement of the immunopathological tissue damage in Devic B7-H1+/+ mice mirrored by later disease onsets and lower disease scores. As a model for spontaneous autoimmunity featuring a close to 100 \% incidence rate, the Devic B7-H1-/- mouse may prove instrumental in clarifying disease-triggering and -limiting factors and in validating novel therapeutic approaches in the field of autoimmune neuroinflammation, in particular the human Devic's disease.}, subject = {Autoimmunit{\"a}t}, language = {en} } @phdthesis{Dunkel2013, author = {Dunkel, Nico}, title = {Regulation of virulence-associated traits of the human fungal pathogen Candida albicans by nitrogen availability}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-83076}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2013}, abstract = {Nitrogen-regulated pathogenesis describes the expression of virulence attributes as direct response to the quantity and quality of an available nitrogen source. As consequence of nitrogen availability, the opportunistic human fungal pathogen Candida albicans changes its morphology and secretes aspartic proteases [SAPs], both well characterized virulence attributes. C. albicans, contrarily to its normally non-pathogenic relative Saccharomyces cerevisiae, is able to utilize proteins, which are considered as abundant and important nitrogen source within the human host. To assimilate complex proteinaceous matter, extracellular proteolysis is followed by uptake of the degradation products through dedicated peptide transporters (di-/tripeptide transporters [PTRs] and oligopeptide transporters [OPTs]). The expression of both traits is transcriptionally controlled by Stp1 - the global regulator of protein utilization - in C. albicans. The aim of the present study was to elucidate the regulation of virulence attributes of the pathogenic fungus C. albicans by nitrogen availability in more detail. Within a genome wide binding profile of Stp1, during growth with proteins, more than 600 Stp1 target genes were identified, thereby confirming its role in the usage of proteins, but also other nitrogenous compounds as nitrogen source. Moreover, the revealed targets suggest an involvement of Stp1 in the general adaption to nutrient availability as well as in the environmental stress response. With the focus on protein utilization and nitrogen-regulated pathogenesis, the regulation of the major secreted aspartic protease Sap2 - additionally one of the prime examples of allelic heterogeneity in C. albicans - was investigated in detail. Thereby, the heterogezygous SAP2 promoter helped to identify an unintended genomic alteration as the true cause of a growth defect of a C. albicans mutant. Additionally, the promoter region, which was responsible for the differential activation of the SAP2 alleles, was delimited. Furthermore, general Sap2 induction was demonstrated to be mediated by distinct cis-acting elements that are required for a high or a low activity of SAP2 expression. For the utilization of proteins as nitrogen source it is also crucial to take up the peptides that are produced by extracellular proteolysis. Therefore, the function and importance of specific peptide transporters was investigated in C. albicans mutants, unable to use peptides as nitrogen source (opt1Δ/Δ opt2Δ/Δ opt3Δ/Δ opt4Δ/Δ opt5Δ/Δ ptr2Δ/Δ ptr22Δ/Δ septuple null mutants). The overexpression of individual transporters in these mutants revealed differential substrate specificities and expanded the specificity of the OPTs to dipeptides, a completely new facet of these transporters. The peptide-uptake deficient mutants were further used to elucidate, whether indeed proteins and peptides are an important in vivo nitrogen source for C. albicans. It was found that during competitive colonization of the mouse intestine these mutants exhibited wild-type fitness, indicating that neither proteins nor peptides are primary nitrogen sources required to efficiently support growth of C. albicans in the mouse gut. Adequate availability of the preferred nitrogen source ammonium represses the utilization of proteins and other alternative nitrogen sources, but also the expression of virulence attributes, like Sap secretion and nitrogen-starvation induced filamentation. In order to discriminate, whether ammonium availability is externally sensed or determined inside the cell by C. albicans, the response to exterior ammonium concentrations of ammonium-uptake deficient mutants (mep1Δ/Δ mep2Δ/Δ null mutants) was investigated. This study showed that presence of an otherwise suppressing ammonium concentration did not inhibit Sap2 proteases secretion and arginine-induced filamentation in these mutants. Conclusively, ammonium availability is primarily determined inside the cell in order to control the expression of virulence traits. In sum, the present work contributes to the current understanding of how C. albicans regulates expression of virulence-associated traits in response to the presence of available nitrogen sources - especially proteins and peptides - in order to adapt its lifestyle within a human host.}, subject = {Candida albicans}, language = {en} } @phdthesis{Bach2013, author = {Bach, Fabian}, title = {Charged Current Top Quark Couplings at the LHC}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-82358}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2013}, abstract = {The top quark plays an important role in current particle physics, from a theoretical point of view because of its uniquely large mass, but also experimentally because of the large number of top events recorded by the LHC experiments ATLAS and CMS, which makes it possible to directly measure the properties of this particle, for example its couplings to the other particles of the standard model (SM), with previously unknown precision. In this thesis, an effective field theory approach is employed to introduce a minimal and consistent parametrization of all anomalous top couplings to the SM gauge bosons and fermions which are compatible with the SM symmetries. In addition, several aspects and consequences of the underlying effective operator relations for these couplings are discussed. The resulting set of couplings has been implemented in the parton level Monte Carlo event generator WHIZARD in order to provide a tool for the quantitative assessment of the phenomenological implications at present and future colliders such as the LHC or a planned international linear collider. The phenomenological part of this thesis is focused on the charged current couplings of the top quark, namely anomalous contributions to the trilinear tbW coupling as well as quartic four-fermion contact interactions of the form tbff, both affecting single top production as well as top decays at the LHC. The study includes various aspects of inclusive cross section measurements as well as differential distributions of single tops produced in the t channel, bq → tq', and in the s channel, ud → tb. We discuss the parton level modelling of these processes as well as detector effects, and finally present the prospected LHC reach for setting limits on these couplings with 10 resp. 100 fb-1 of data recorded at √s = 14 TeV.}, subject = {LHC}, language = {en} } @phdthesis{Regneri2013, author = {Regneri, Janine}, title = {Transcriptional regulation of cancer genes in the Xiphophorus melanoma system}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-82319}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2013}, abstract = {The Xiphophorus melanoma system is a useful animal model for the study of the genetic basis of tumor formation. The development of hereditary melanomas in interspecific hybrids of Xiphophorus is connected to pigment cell specific overexpression of the mutationally activated receptor tyrosine kinase Xmrk. In purebred fish the oncogenic function of xmrk is suppressed by the molecularly still unidentified locus R. The xmrk oncogene was generated by a gene duplication event from the Xiphophorus egfrb gene and thereby has acquired a new 5' regulatory sequence, which has probably altered the transcriptional control of the oncogene. So far, the xmrk promoter region was still poorly characterized and the molecular mechanism by which R controls xmrk-induced melanoma formation in Xiphophorus still remained to be elucidated. To test the hypothesis that R controls melanoma development in Xiphophorus on the transcriptional level, the first aim of the thesis was to gain a deeper insight into the transcriptional regulation of the xmrk oncogene. To this end, a quantitative analysis of xmrk transcript levels in different Xiphophorus genotypes carrying either the highly tumorigenic xmrkB or the non-tumorigenic xmrkA allele was performed. I was able to demonstrate that expression of the tumorigenic xmrkB allele is strongly increased in malignant melanomas of R-free backcross hybrids compared to benign lesions, macromelanophore spots, and healthy skin. The expression level of the non-tumorigenic xmrkA allele, in contrast, is not influenced by the presence or absence of R. These findings strongly indicate that differential transcriptional regulation of the xmrk promoter triggers the tumorigenic potential of these xmrk alleles. To functionally characterize the xmrk promoter region, I established a luciferase assay using BAC clones containing the genomic regions where xmrk and egfrb are located for generation of reporter constructs. This approach showed for the first time a melanoma cell specific transcriptional activation of xmrkB by its flanking regions, thereby providing the first functional evidence that the xmrk oncogene is controlled by a pigment cell specific promoter region. Subsequent analysis of different deletion constructs of the xmrkB BAC reporter construct strongly indicated that the regulatory elements responsible for the tumor-inducing overexpression of xmrkB in melanoma cells are located within 67 kb upstream of the xmrk oncogene. Taken together, these data indicate that melanoma formation in Xiphophorus is regulated by a tight transcriptional control of the xmrk oncogene and that the R locus acts through this mechanism. As the identification of the R-encoded gene(s) is necessary to fully understand how melanoma formation in Xiphophorus is regulated, I furthermore searched for alternative R candidate genes in this study. To this end, three genes, which are located in the genomic region where R has been mapped, were evaluated for their potential to be a crucial constituent of the regulator locus R. Among these genes, I identified pdcd4a, the ortholog of the human tumor suppressor gene PDCD4, as promising new candidate, because this gene showed the expression pattern expected from the crucial tumor suppressor gene encoded at the R locus.}, subject = {Melanom}, language = {en} } @phdthesis{Kullmann2013, author = {Kullmann, Martin Armin}, title = {Tracing Excited-State Photochemistry by Multidimensional Electronic Spectroscopy}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-81276}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2013}, abstract = {Light-induced excitation of matter proceeds within femtoseconds, resulting in excited states. Originating from these states chemical reaction mechanisms, like isomerization or bond formation, set in. Photophysical mechanisms like energy distribution and excitonic delocalization also occur. Thus, the reaction scheme has to be disentangled by assessing the importance of each process. Spectroscopic methods based on fs laser pulses have emerged as a versatile tool to study these reactions. Within this thesis time-resolved experiments with fs laser pulses on various molecular systems were performed. Novel photosystems, with possible applications ranging from ultrathin molecular wires to molecular switches, were extensively characterized. To resolve the complex kinetics of the investigated systems, time-resolved techniques had to be newly developed. By combining a visible excitation pulse pair with an additional pulse and a continuum probe electronic triggered-exchange two-dimensional spectroscopy (TE2D) was demonstrated for the first time. This goal was accomplished by combining a three-color transient-absorption setup with a pulse shaper. Hence, 2D spectroscopy with a continuum probe was also implemented. Using these methods two different molecular systems in solution were characterized in a comprehensive manner. (ZnTPP)2, a directly beta,beta'-linked Zn-metallated bisporphyrin, and a spiropyran-merocyanine photosystem, 6,8-dinitro BIPS, were characterized. (ZnTPP)2 is a homodimer, featuring strong excitonic effects. These manifest themselves in a twofold splitting of the Soret band (S2). 6,8-Dinitro BIPS exists in one of two possible conformations. The ring closed spiropyran absorbs only in the UV, while the ring open merocyanine also absorbs in the visible. For both molecular systems photodynamics upon illumination were monitored using transient-absorption. However, the obtained results were ambiguous, necessitating more complex methods. In the case of (ZnTPP)2 first the monomeric building block was characterized. There, population transfer from the S2 state into S1 within 2 ps was identified. Afterwards, intersystem crossing proceeds within 2 ns. For (ZnTPP)2 similar pathways were found, albeit the relaxation is faster. The intersystem crossing with 1.5 ns was not only indirectly deduced but directly measured by probing in the NIR spectral range. The excitonic influence of was investigated by coherent 2D spectroscopy in the Soret band. Population transfer within S2 was directly visualized on a time-scale of 100 fs. Calculation of the 2D spectra of a simple homodimer confirmed the results. After this analysis of the distinct excitonic character, this molecule may serve as a building block for larger porphyrin arrays with applications ranging from asymmetric catalysis over biomimicry of electron-transfer to organic optical devices. The second photosystem was the molecular switch 6,8-dinitro BIPS, existing in two conformations. Merocyanine is the more stable form in thermal equilibrium. Transient-absorption measurements uncovered that the sample consisted of a mixture of two merocyanine isomers, referred to as TTC and TTT. However, both isomers are capable of ring-closure forming spiropyran. The remaining excited molecules return to the ground state radiatively. Conducting 2D measurements utilizing a continuum probe the differing photochemistry of both isomers was examined in a single measurement. No isomerization between these conformations was detected. Therefore, 6,8-dinitro BIPS performs a concerted switching without long-living intermediates. This was confirmed by a pump-repump-probe scan. 6,8-DinitroBIPS can be closed by visible and opened by UV pulses using subsequent pulses and vice versa. These mechanisms via singlet pathways satisfy an important criterion for a unimolecular switching device. A second pump-repump-probe experiment showed that the sample is ionized, resulting in a merocyanine radical cation, when the first excited state is resonantly excited. Furthermore, by implementing TE2Dspectroscopy, it was elucidated that only TTC was ionized. Taking all this into account new techniques were developed and complex molecular systems were characterized within this thesis. Deeper insight into the photodynamics of (ZnTPP)2and 6,8-dinitro BIPS was gained by adapting transient absorption for the NIR spectral range, constructing a 2D setup in pump-probe geometry, and combining it with multipulse excitation to coherent TE2D. All techniques solved the questions for which they were constructed, but they are not limited to these cases. Especially TE2D opens new roads in photochemistry. By connecting reactant, product and the corresponding intermediates, a chemical reaction can be tracked through all stages, making unambiguous identification of the reactive states feasible. Thus, fundamental insight into the photochemistry of molecular compounds is gained.}, subject = {Femtosekundenspektroskopie}, language = {en} } @phdthesis{Sperlich2013, author = {Sperlich, Andreas}, title = {Electron Paramagnetic Resonance Spectroscopy of Conjugated Polymers and Fullerenes for Organic Photovoltaics}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-81244}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2013}, abstract = {In the presented thesis, the various excited states encountered in conjugated organic semiconductors are investigated with respect to their utilization in organic thin-film solar cells. Most of these states are spin-baring and can therefore be addressed by means of magnetic resonance spectroscopy. The primary singlet excitation (spin 0), as well as positive and negative polaronic charge carriers (spin 1/2) are discussed. Additionally, triplet excitons (spin 1) and charge transfer complexes are examined, focussing on their differing spin-spin interaction strength. For the investigation of these spin-baring states especially methods of electron paramagnetic resonance (EPR) are best suited. Therefore according experimental methods were implemented in the course of this work to study conjugated polymers, fullerenes and their blends with continuous wave as well as time-resolved EPR and optically detected magnetic resonance.}, subject = {Organische Solarzelle}, language = {en} } @phdthesis{Gsaenger2013, author = {Gs{\"a}nger, Marcel}, title = {Organic Thin-Film Transistors Based on Dipolar Squaraine Dyes}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-80588}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2013}, abstract = {In summary, it can be stated that the herein studied set of acceptor-substituted squaraine dyes can be seen as potent candidates for OTFTs. Furthermore, their transistor performance can be easily tuned to obtain hole mobilities up to 0.45 cm2/Vs from solution and 1.3 cm2/Vs from sublimation by choosing adequate deposition techniques. In the end, a probable structural model derived from studies of the thin-film morphology by methods such as optical spectroscopy, AFM and X-ray even facilitated the clarification of the observed charge transport behavior.}, subject = {Organische Chemie}, language = {en} } @phdthesis{Mandel2013, author = {Mandel, Karl}, title = {Synthesis and Characterisation of Superparamagnetic Nanocomposite Particles for Water Purification and Resources Recovery}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-81208}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2013}, abstract = {Superparamagnetic nanocomposite microparticles, compromised of magnetite nanoparticles in a silica matrix, have been synthesised and surface-modified to act as adsorbers for substances (e.g. toxic heavy metals or valuable resources) dissolved in fluids like water. The particles can be used for a magnetic-extraction-assisted separation process of these target substances which thereby can be recovered from the fluid.}, subject = {Magnetisches Trennverfahren}, language = {en} } @phdthesis{Geissler2013, author = {Geissler, Julia Maria}, title = {Neuropsychological Endophenotypes of Attention-Deficit/Hyperactivity Disorder}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-79221}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2013}, abstract = {Attention-Deficit/Hyperactivity Disorder (ADHD) endophenotypes as a link between phenotype and genotype were the focus of the present work. Candidate endophenotypes were investigated via neuropsychological tasks during the simultaneous recording of a 21-channel electroencephalogram. Since endophenotypes are assumed to more closely reflect genetic variation, the influence of ADHD-associated genes Catechol-O-methyl transferase (COMT), the dopamine transporter (DAT, SLC6A3) and Latrophilin-3 (LPHN3) was analysed. Response inhibition was assessed with a cued Continuous Performance Test, for working memory we used an n-back task, sensory gating was measured via the paired clicks paradigm and response time variability (RTV) was quantified by the standard deviation of reaction times. The sample comprised medicated (N=36) and unmedicated (N=42) ADHD patients and matched control children and adolescents (N=41). The electrophysiological correlate of response inhibition was the centroid location during response execution and inhibition, and the degree of anteriorization (NGA). Sensory gating reflects the attenuation of the P50 response to the second of two auditory stimuli presented in short succession. Working memory was examined during target and non-target trials, reflecting specific information processing stages: early sensory processing (P100 and N100), selection of material (P150), memory retrieval (N300), event categorization (P300) and updating of working memory content (P450). Performance was quantified in terms of omission errors reflecting inattention and false alarms reflecting impulsivity, as well as speed and variability of reactions. Unmedicated ADHD patients had more omission errors and more variable reaction times, pointing to difficulties with attention and state regulation. NGA did not prove an optimal endophenotype candidate, since it was not yet developed in approximately half of the examined children and adolescents. It was independent of diagnosis; however ADHD risk alleles for DAT conferred lower NGA as well as more variable reaction times across groups. DAT genotype interacted with diagnosis on the level of centroid location, however, it did not manifest in performance deficits. In the case of sensory gating, homozygosity for the DAT allele associated with ADHD (10R) conferred impairment. ADHD was only relevant in participants without genetic risk, where patients without medication struggled most with suppression. In the working memory task, DAT modulated the timing of material selection in interaction with cognitive load and diagnosis: under high load unmedicated patients showed delayed responses, while under low load risk carriers on medication had faster responses than controls. Early processing and event-categorization were stronger in unmedicated ADHD with risk genotype, but dampened without risk. An interesting trend emerged for LPHN3, where carrying all risk variants was associated with higher NGA in ADHD patients irrespective of medication. This warrants further study, as the haplotype also exerts a positive influence on sensory gating specifically in patients. At the same time within the genetic risk group, unmedicated patients had the weakest NGA. However, the LPHN3 risk haplotype effected more posterior Go centroids, putatively facilitating response execution, which is supported by a higher number of false alarms. When inhibition was required, the risk variants led to more posterior centroids in unmedicated compared to medicated patients as well as controls, speaking to differences in inhibition-related brain activation. While as expected the risk haplotype led to compromised gating in unmedicated ADHD, this was reversed in healthy controls where the haplotype was acting in a protective manner with enhanced filtering. During working memory operations, the risk haplotype showed stronger N300 responses suggesting investment of more resources. While COMT did not exert an influence on NGA directly, carriers of the risk allele (met) had more posterior centroids both during response execution and inhibition, and displayed more variable responses in addition to being more prone to false alarms. Unmedicated patients produced smaller P300 during successful execution of responses than controls in absence of the risk allele, while with risk they had shorter latencies and presumably tend towards premature reactions. Additionally, it brought out impairments in sensory gating, thus making unmedicated patients less able to filter out irrelevant information, while they were able to compensate with the protective genotype. The influence of COMT on sensory gating seems to be specific for ADHD, as this gene was of no consequence in healthy controls. In the working memory task, met was beneficial for updating as reflected by P450 amplitude. In ADHD irrespective of medication COMT did not change P450 strength, but for controls this effect was observed.}, subject = {Aufmerksamkeits-Defizit-Syndrom}, language = {en} } @phdthesis{Niemann2013, author = {Niemann, Sylvia}, title = {Seed Coat Permeability of Active Ingredients}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-79585}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2013}, abstract = {The seed coat is the barrier controlling exchange of solutes between the plant embryo and its environment. This exchange is of importance for example in the uptake of germination inhibitors or in the uptake of agrochemicals applied as seed treatment. A thorough understanding of the basic mechanisms underlying solute permeation across the seed coat would help to improve the effectiveness of seed treatment formulations. In seed treatment formulations, additives can be used to enhance or decrease mobility or uptake of the active ingredient (AI). In the present study the seed coat barrier properties and the seed coat permeation process was examined with the model species Pisum sativum and with a set of model solutes. The lipophilic fraction of the seed coat was analysed by gas chromatography and mass spectrometry and it was found that the total lipophilic compartment of the seed coat represents 0.61 \% of the weight of a swollen seed coat. The seed is covered by a lipophilic cuticle. The seed coat coverage with cuticular waxes is ten to 18-fold lower than wax coverage of pea leaves, though. In order to examine sorption of solutes in the small lipophilic compartment of the seed coat, seed coat/water partition coefficients were determined. These cover a much smaller range than the corresponding n-octanol/water partition coefficients. The lipophilic sorption compartment as calculated from the seed coat/water partition coefficient data is smaller than the analysed total lipophilic compartment of the seed coat since not all of the lipid components can act as sorption compartment. During seed swelling, the pea seed nearly doubles its weight. The uptake of water is driven by the very low water potential of the dry seed and controlled by the seed coat hydraulic conductivity both of which increase during seed swelling. Depending on the available form of water, water uptake can take place by diffusion from air humidity or by mass flow from liquid water. Water uptake by a seed in moist sand takes place by a combination of both uptake mechanisms. The basic transport mechanism underlying solute permeation of seed coats was analysed by steady-state experiments with a newly devised experimental setup. The permeance P for permeation of the set of model compounds across isolated seed coat halves ranged from 3.34 x 10-8 m s-1 for abamectin to 18.9 x 10-8 m s-1 for caffeine. It was found that solute permeation across the seed coat takes aqueous pathways. This was concluded from the facts that molar volume instead of lipophilicity of the solutes determine permeation and that the temperature effect on permeation is very small. This is in contrast to typical leaf and fruit cuticular uptake where lipophilic pathways dominate. Solute uptake across the seed coat can take place by two different mechanisms both of which take aqueous pathways. Uptake can be by diffusion and in the presence of a bulk flow of water driven by a water potential difference also by solvent drag. The presence of the solvent drag uptake mechanism shows that the aqueous pathways form an aqueous continuum across the seed coat. These findings indicate that the seed coat covering cuticle does not form a continuous barrier enclosing the seed. In order to examine solute uptake across the seed coat under conditions close to a situation taking place in the field, the process of uptake of a seed treatment AI in the field was simulated. In the situation of a treated seed in the field, the seed treatment residue dissolves and then the AI can move either into the surrounding soil or across the seed coat into the seed. Uptake across the seed coat can take place either by diffusion or during seed swelling by the solvent drag mechanism. Since the seed treatment residue depletes over time, non-steady-state uptake takes place. To simulate these processes, laboratory scale seed treatment methods were established to produce treated seeds and isolated treated seed coat halves. Experimental setups for non-steady-state uptake experiments were established with whole treated seeds and with isolated treated seed coat halves as simplified screening tool. By modelling of the AI uptake as a first-order process the rate constant k and the final relative uptake amount Mt→∞ M0-1 were obtained. With k and Mt→∞ M0-1 a quantification and comparison of the uptake curves was possible. Both in the experiments with whole treated seeds and with isolated treated seed coats, uptake of metalaxyl-M was much faster than uptake of sedaxane. In the uptake of a seed treatment AI, not only the solute's molar volume but also its water solubility determine uptake. The solute's water solubility is important for dissolution of the AI from the seed treatment residue and thus determines availability of the AI for uptake. Water solubility also controls the possible concentration in solution and thus the driving force for diffusive uptake. Furthermore, the AI amount taken up by solvent drag is determined by concentration in the inflowing water and thus by water solubility. In the experiments with whole treated seeds the additive effects on uptake were smaller than in the experiments with isolated treated seed coats or not significant. Adigor functions as an emulsifier and can lead to a slight increase of AI mobilisation from the seed treatment residue. NeoCryl A-2099 can cause a slowed down release of the AI from the seed treatment residue. The effects of both additives were smaller than the effect caused by different AI physico-chemical properties. Therefore, the most important factor determining uptake of a seed treatment AI are the AI's physico-chemical properties, especially its water solubility.}, subject = {Samenschale}, language = {en} } @phdthesis{Solanki2013, author = {Solanki, Narendra}, title = {Novelty choice in Drosophila melanogaster}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-78377}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2013}, abstract = {This study explores novelty choice, a behavioral paradigm for the investigation of visual pattern recognition and learning of the fly Drosophila melanogaster in the flight simulator. Pattern recognition in novelty choice differs significantly from pattern recognition studied by heat conditioning, although both paradigms use the same test. Out of the four pattern parameters that the flies can learn in heat conditioning, novelty choice can be shown for height (horizontal bars differing in height), size and vertical compactness but not for oblique bars oriented at +/- 45°. Upright and inverted Ts [differing in their centers of gravity (CsOG) by 13°] that have been extensively used for heat conditioning experiments, do not elicit novelty choice. In contrast, horizontal bars differing in their CsOG by 13° do elicit novelty choice; so do the Ts after increasing their CsOG difference from 13° to 23°. This indicates that in the Ts the heights of the CsOG are not the only pattern parameters that matter for the novelty choice behavior. The novelty choice and heat conditioning paradigms are further differentiated using the gene rutabaga (rut) coding for a type 1 adenylyl cyclase. This protein had been shown to be involved in memory formation in the heat conditioning paradigm. Novelty choice is not affected by mutations in the rut gene. This is in line with the finding that dopamine, which in olfactory learning is known to regulate Rutabaga via the dopamine receptor Dumb in the mushroom bodies, is dispensable for novelty choice. It is concluded that in novelty choice the Rut cAMP pathway is not involved. Novelty choice requires short term working memory, as has been described in spatial orientation during locomotion. The protein S6KII that has been shown to be involved in visual orientation memory in walking flies is found here to be also required for novelty choice. As in heat conditioning the central complex plays a major role in novelty choice. The S6KII mutant phenotype for height can be rescued in some subsets of the ring neurons of the ellipsoid body. In addition the finding that the ellipsoid body mutants ebo678 and eboKS263 also show a mutant phenotype for height confirm the importance of ellipsoid body for height novelty choice. Interestingly some neurons in the F1 layer of the fan-shaped body are necessary for height novelty choice. Furthermore, different novelty choice phenotypes for different pattern parameters are found with and without mushroom bodies. Mushroom bodies are required in novelty choice for size but they are dispensable for height and vertical compactness. This special circuit requirement for the size parameter in novelty choice is found using various means of interference with mushroom body function during development or adulthood.}, subject = {Drosophila melanogaster}, language = {en} } @phdthesis{Pielstroem2013, author = {Pielstr{\"o}m, Steffen}, title = {On the Role of Local Information in the Spatial Organisation of Collective Nest Digging in the Leaf-Cutting Ant Atta vollenweideri (Forel, 1893)}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-79118}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2013}, abstract = {Many ant species excavate underground nests. One of the most impressive examples is the Chaco leaf-cutting ant Atta vollenweideri from the Gran Chaco region in South America. The nests excavated by the workers of that species are among the largest insect-built structures on the planet. They are ecavated over years possibly involving millions of working individuals. However, the mechanisms underlying the organisation of collective nest digging in ants remain largely unknown. Considering the sheer dimensions of the nest in comparison to the size and presumably limited perceptual and cognitive abilities of the single worker, the assumption can be made that organising mechanisms are mostly based on responses of individuals to local stimuli within their perceptual range. Among these local stimuli that guide nest digging we can expect environmental variables, stimuli that relate to the requirements of the colony, and stimuli related to the spatial coordination of collective effort. The present thesis investigates the role of local stimuli from these three categories in the organisation of collective digging behaviour in the Chaco leaf-cutting ant. It describes experiments on (1) how workers respond in the context of digging to differences in soil moisture, which comprises an important environmental variable; (2) how available nest space influences nest enlargement; (3) and how the spatial coordination of excavating workers is implemented by responding to stimuli arising from nest mates while engaged in digging behaviour. The experiments on soil water content show that workers prefer to dig in moist materials that allow for fast excavation and transport rates. Accordingly, an unequal distribution of water in the soil around a nest can influence how the nest shape develops. On the other hand, results also indicate that workers strongly avoid excavating in extremely moist materials. Regarding the abundant occurrence of flooding events in the Gran Chaco region, the latter can be interpreted as an adaptation to avoid water inflow into the nest. In the experiments on the effect of nest space, the ants excavated less when presented with larger nests. When a large amount of space was suddenly added to the nest during the digging process, excavation rates decreased according to the new volume. These observations confirm the hypothesis that digging activity is regulated according to space requirements, possibly because crowding conditions inside the nest influence excavation behaviour. However, observations also indicate an intrinsic decrease of digging motivation with time. Moreover, excavation rates correlate with nest size only when comparing nests of similar shape. Distributing a similar nest volume to three smaller chambers, instead of one, resulted in drastically decreased digging rates. A possible explanation for that observation lies in the distribution of workers inside the nest that may vary according to nest geometry: a different distribution of individuals can lead to in different local crowding conditions in similar nest volumes. Furthermore, two different stimuli are described that are used in the spatial coordination of collective digging effort. First, fresh soil pellets deposited close to the digging site on their way from the surface increase the probability that arriving workers join excavation efforts at the same site. The deposition of pellets on the way is a consequence of sequential task partitioning during soil transport. The pellets are carried in transport chains that closely resemble the modalities of leaf transport observed at the surface. Second, workers stridulate while digging. The short-ranged vibrational signals produced thereby also attract nest mates to excavate at the same location. Accordingly, two mutually complementing mechanisms are described that allow to concentrate excavators at one location. In both cases, a local stimulus that is generated by current close-by excavation activity increases the probability of the stimulus receiver to dig close to other excavators. In an environment otherwise poor in digging stimuli, these mechanisms can be especially important to give collective digging efforts a common direction. As a consequence it can be argued that the spatial organisation of collective digging is based on choice copying. Individuals copy nest mate decisions on where to excavate by responding to local stimuli provided by nest mate digging activity. Taken together, responses to local stimuli can determine the direction of nest growth, aid in preventing the inflow of surface water into the nest, guide the adjustment of nest size to colony requirements and spatially coordinate collective digging efforts. Even though it cannot be ruled out that digging responses based e.g. on spatial memory or long-term experience exist, the results presented here clearly demonstrate that responses to local information account for many important aspects of nest development.}, subject = {Blattschneiderameisen}, language = {en} } @phdthesis{Herrmann2013, author = {Herrmann, Christian}, title = {Robotic Motion Compensation for Applications in Radiation Oncology}, isbn = {978-3-923959-88-4}, doi = {10.25972/OPUS-6727}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-79045}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2013}, abstract = {Aufgrund vieler Verbesserungen der Behandlungsmethoden im Laufe der letzten 60 Jahre, erlaubt die Strahlentherapie heutzutage pr{\"a}zise Behandlungen von statischen Tumoren. Jedoch birgt die Bestrahlung von sich bewegenden Tumoren noch große Herausforderungen in sich, da bewegliche Tumore oft den Behandlungsstrahl verlassen. Dabei reduziert sich die Strahlendosis im Tumor w{\"a}hrend sich diese im umliegenden gesunden Gewebe erh{\"o}ht. Diese Forschungsarbeit zielt darauf ab, die Grenzen der Strahlentherapie zu erweitern, um pr{\"a}zise Behandlungen von beweglichen Tumoren zu erm{\"o}glichen. Der Fokus der Arbeit liegt auf der Erstellung eines Echtzeitsystems zur aktiven Kompensation von Tumorbewegungen durch robotergest{\"u}tzte Methoden. W{\"a}hrend Behandlungen befinden sich Patienten auf einer Patientenliege, mit der statische Lagerungsfehler vor Beginn einer Behandlung korrigiert werden. Die in dieser Arbeit verwendete Patientenliege "HexaPOD" ist ein paralleler Manipulator mit sechs Freiheitsgraden, der große Lasten innerhalb eines eingeschr{\"a}nkten Arbeitsbereichs pr{\"a}zise positionieren kann. Obwohl der HexaPOD urspr{\"u}nglich nicht f{\"u}r dynamische Anwendungen konzipiert wurde, wird dieser f{\"u}r eine dauerhafte Bewegungskompensation eingesetzt, in dem Patienten so bewegt werden, dass Tumore pr{\"a}zise im Zentralstrahl w{\"a}hrend der Dauer einer gesamten Behandlung verbleiben. Um ein echtzeitf{\"a}higes Kompensationssystem auf Basis des HexaPODs zu realisieren, muss eine Reihe an Herausforderungen bew{\"a}ltigt werden. Echtzeitaspekte werden einerseits durch die Verwendung eines harten Echtzeitbetriebssystems abgedeckt, andererseits durch die Messung und Sch{\"a}tzung von Latenzzeiten aller physikalischen Gr{\"o}ßen im System, z.B. Messungen der Tumor- und Atemposition. Neben der konsistenten und durchg{\"a}ngigen Ber{\"u}cksichtigung von akkuraten Zeitinformation, werden alle software-induzierten Latenzen adaptiv ausgeglichen. Dies erfordert Vorhersagen der Tumorposition in die nahe Zukunft. Zahlreiche Pr{\"a}diktoren zur Atem- und Tumorpositionsvorhersage werden vorgeschlagen und anhand verschiedenster Metriken evaluiert. Erweiterungen der Pr{\"a}diktionsalgorithmen werden eingef{\"u}hrt, die sowohl Atem- als auch Tumorpositionsinformationen fusionieren, um Vorhersagen ohne explizites Korrelationsmodell zu erm{\"o}glichen. Die Vorhersagen bestimmen den zuk{\"u}nftigen Bewegungspfad des HexaPODs, um Tumorbewegungen zu kompensieren. Dazu werden verschiedene Regler entwickelt, die eine Trajektorienverfolgung mit dem HexaPOD erm{\"o}glichen. Auf der Basis von linearer und nicht-linearer dynamischer Modellierung des HexaPODs mit Methoden der Systemidentifikation, wird zun{\"a}chst ein modellpr{\"a}diktiver Regler entwickelt. Ein zweiter Regler wird auf Basis einer Annahme {\"u}ber das Arbeitsprinzip des internen Reglers im HexaPOD entworfen. Schließlich wird ein dritter Regler vorgeschlagen, der beide vorhergehenden Regler miteinander kombiniert. F{\"u}r jeden dieser Regler werden vergleichende Ergebnisse aus Experimenten mit realer Hardware und menschlichen Versuchspersonen pr{\"a}sentiert und diskutiert. Dar{\"u}ber hinaus wird die geeignete Wahl von freien Parametern in den Reglern vorgestellt. Neben einer pr{\"a}zisen Verfolgung der Referenztrajektorie spielt der Patientenkomfort eine entscheidende Rolle f{\"u}r die Akzeptanz des Systems. Es wird gezeigt, dass die Regler glatte Trajektorien realisieren k{\"o}nnen, um zu garantieren, dass sich Patienten wohl f{\"u}hlen w{\"a}hrend ihre Tumorbewegung mit Genauigkeiten im Submillimeterbereich ausgeglichen wird. Gesamtfehler werden im Kompensationssystem analysiert, in dem diese zu Trajektorienverfolgungsfehlern und Pr{\"a}diktionsfehlern in Beziehung gesetzt werden. Durch Ausnutzung von Eigenschaften verschiedener Pr{\"a}diktoren wird gezeigt, dass die Startzeit des Systems bis die Verfolgung der Referenztrajektorie erreicht ist, wenige Sekunden betr{\"a}gt. Dies gilt insbesondere f{\"u}r den Fall eines initial ruhenden HexaPODs und ohne Vorwissen {\"u}ber Tumorbewegungen. Dies zeigt die Eignung des Systems f{\"u}r die sehr kurz fraktionierten Behandlungen von Lungentumoren. Das Tumorkompensationssystem wurde ausschließlich auf Basis von klinischer Standard-Hardware entwickelt, die in vielen Behandlungsr{\"a}umen zu finden ist. Durch ein einfaches und flexibles Design k{\"o}nnen Behandlungsr{\"a}ume in kosteneffizienter Weise um M{\"o}glichkeiten der Bewegungskompensation erg{\"a}nzt werden. Dar{\"u}ber hinaus werden aktuelle Behandlungsmethoden wie intensit{\"a}tsmodulierte Strahlentherapie oder Volumetric Modulated Arc Therapy in keiner Weise eingeschr{\"a}nkt. Aufgrund der Unterst{\"u}tzung verschiedener Kompensationsmodi kann das System auf alle beweglichen Tumore angewendet werden, unabh{\"a}ngig davon ob die Bewegungen vorhersagbar (Lungentumore) oder nicht vorhersagbar (Prostatatumore) sind. Durch Integration von geeigneten Methoden zur Tumorpositionsbestimmung kann das System auf einfache Weise zur Kompensation von anderen Tumoren erweitert werden.}, subject = {Robotik}, language = {en} } @phdthesis{Paasche2013, author = {Paasche, Alexander}, title = {Mechanistic Insights into SARS Coronavirus Main Protease by Computational Chemistry Methods}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-79029}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2013}, abstract = {The SARS virus is the etiological agent of the severe acute respiratory syndrome, a deadly disease that caused more than 700 causalities in 2003. One of its viral proteins, the SARS coronavirus main protease, is considered as a potential drug target and represents an important model system for other coronaviruses. Despite extensive knowledge about this enzyme, it still lacks an effective anti-viral drug. Furthermore, it possesses some unusual features related to its active-site region. This work gives atomistic insights into the SARS coronavirus main protease and tries to reveal mechanistic aspects that control catalysis and inhibition. Thereby, it applies state-of-the-art computational methods to develop models for this enzyme that are capable to reproduce and interpreting the experimental observations. The theoretical investigations are elaborated over four main fields that assess the accuracy of the used methods, and employ them to understand the function of the active-site region, the inhibition mechanism, and the ligand binding. The testing of different quantum chemical methods reveals that their performance depends partly on the employed model. This can be a gas phase description, a continuum solvent model, or a hybrid QM/MM approach. The latter represents the preferred method for the atomistic modeling of biochemical reactions. A benchmarking uncovers some serious problems for semi-empirical methods when applied in proton transfer reactions. To understand substrate cleavage and inhibition of SARS coronavirus main protease, proton transfer reactions between the Cys/His catalytic dyad are calculated. Results show that the switching between neutral and zwitterionic state plays a central role for both mechanisms. It is demonstrated that this electrostatic trigger is remarkably influenced by substrate binding. Whereas the occupation of the active-site by the substrate leads to a fostered zwitterion formation, the inhibitor binding does not mimic this effect for the employed example. The underlying reason is related to the coverage of the active-site by the ligand, which gives new implications for rational improvements of inhibitors. More detailed insights into reversible and irreversible inhibition are derived from in silico screenings for the class of Michael acceptors that follow a conjugated addition reaction. From the comparison of several substitution patterns it becomes obvious that different inhibitor warheads follow different mechanisms. Nevertheless, the initial formation of a zwitterionic catalytic dyad is found as a common precondition for all inhibition reactions. Finally, non-covalent inhibitor binding is investigated for the case of SARS coranavirus main protease in complex with the inhibitor TS174. A novel workflow is developed that includes an interplay between theory and experiment in terms of molecular dynamic simulation, tabu search, and X-ray structure refinement. The results show that inhibitor binding is possible for multiple poses and stereoisomers of TS174.}, subject = {SARS}, language = {en} } @phdthesis{Groh2013, author = {Groh, Janos Michael}, title = {Pathogenic impact of immune cells in mouse models of neuronal ceroid lipofuscinosis}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-77684}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2013}, abstract = {The neuronal ceroid lipofuscinoses (NCLs) are fatal neurodegenerative disorders in which the visual system is affected in early stages of disease. A typical accompanying feature is neuroinflammation, the pathogenic impact of which is presently unknown. In this study, the role of inflammatory cells in the pathogenesis was investigated in Palmitoyl-protein thioesterase 1-deficient (Ppt1-/-) and Ceroidlipofuscinosis, neuronal 3-deficient (Cln3-/-) mice, models of the infantile and juvenile forms of NCL, respectively. Focusing predominantly on the visual system, an infiltration of CD8+ cytotoxic Tlymphocytes and an activation of microglia/macrophage-like cells was observed early in disease. To analyze the pathogenic impact of lymphocytes, Ppt1-/- mice were crossbred with mice lacking lymphocytes (Rag1-/-) and axonal transport, perturbation and neuronal survival were scored. Lack of lymphocytes led to a significant amelioration of neuronal disease and reconstitution experiments revealed a crucial role of CD8+ cytotoxic T-lymphocytes. Lack of lymphocytes also caused an improved clinical phenotype and extended longevity. To investigate the impact of microglia/macrophage-like cells, Ppt1-/- and Cln3-/- mice were crossbred with mice lacking sialoadhesin (Sn-/-), a monocyte lineage-restricted cell adhesion molecule important for interactions between macrophage-like cells and lymphocytes. Similar to the lack of lymphocytes, absence of sialoadhesin significantly ameliorated the disease in Ppt1-/- and Cln3-/- mice. Taken together, both T-lymphocytes and microglia/macrophage-like cells were identified as pathogenic mediators in two distinct forms of fatal inherited neurodegenerative storage disorders. These studies expand the concept of secondary inflammation as a common pathomechanistic feature in some neurological diseases and provide novel insights that may be crucial for developing treatment strategies for different forms of NCL.}, subject = {Nervendegeneration}, language = {en} } @phdthesis{Zeeb2013, author = {Zeeb, Steffen}, title = {Chaos Synchronization in Time-Delayed Coupled Networks}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-78966}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2013}, abstract = {Die vorliegende Arbeit befasst sich mit der Untersuchung verschiedener Aspekte der Chaos Synchronisation von Netzwerken mit zeitverz{\"o}gerten Kopplungen. Ein Netzwerk aus identischen chaotischen Einheiten kann vollst{\"a}ndig und isochron synchronisieren, auch wenn der Signalaustausch einer starken Zeitverz{\"o}gerung unterliegt. Im ersten Teil der Arbeit werden Systeme mit mehreren Zeitverz{\"o}gerungen betrachtet. Dabei erstrecken sich die verschiedenen Zeitverz{\"o}gerungen jeweils {\"u}ber einen weiten Bereich an Gr{\"o}ßenordnungen. Es wird gezeigt, dass diese Zeitverz{\"o}gerungen im Lyapunov Spektrum des Systems auftreten; verschiedene Teile des Spektrums skalieren jeweils mit einer der Zeitverz{\"o}gerungen. Anhand des Skalierungsverhaltens des maximalen Lyapunov Exponenten k{\"o}nnen verschiedene Arten von Chaos definiert werden. Diese bestimmen die Synchronisationseigenschaften eines Netzwerkes und werden insbesondere wichtig bei hierarchischen Netzwerken, d.h. bei Netzwerken bestehend aus Unternetzwerken, bei welchen Signale innerhalb des Unternetzwerkes auf einer anderen Zeitskala ausgetauscht werden als zwischen verschiedenen Unternetzwerken. F{\"u}r ein solches System kann sowohl vollst{\"a}ndige als auch Unternetzwerksynchronisation auftreten. Skaliert der maximale Lyapunov Exponent mit der k{\"u}rzeren Zeitverz{\"o}gerung des Unternetzwerkes dann k{\"o}nnen nur die Elemente des Unternetzwerkes synchronisieren. Skaliert der maximale Lyapunov Exponent allerdings mit der l{\"a}ngeren Zeitverz{\"o}gerung kann das komplette Netzwerk vollst{\"a}ndig synchronisieren. Dies wird analytisch f{\"u}r die Bernoulli Abbildung und numerisch f{\"u}r die Zelt Abbildung gezeigt. Der zweite Teil befasst sich mit der Attraktordimension und ihrer {\"A}nderung am {\"U}bergang zur vollst{\"a}ndiger Chaos Synchronisation. Aus dem Lyapunov Spektrum des Systems wird die Kaplan-Yorke Dimension berechnet und es wird gezeigt, dass diese am Synchronisations{\"u}bergang aus physikalischen Gr{\"u}nden einen Sprung haben muss. Aus der Zeitreihe der Dynamik des Systems wird die Korrelationsdimension bestimmt und anschließend mit der Kaplan-Yorke Dimension verglichen. F{\"u}r Bernoulli Systeme finden wir in der Tat eine Diskontinuit{\"a}t in der Korrelationsdimension. Die St{\"a}rke des Sprungs der Kaplan-Yorke Dimension wird f{\"u}r ein Netzwerk aus Bernoulli Einheiten als Funktion der Netzwerkgr{\"o}ße berechnet. Desweiteren wird das Skalierungsverhalten der Kaplan-Yorke Dimension sowie der Kolmogoroventropie in Abh{\"a}ngigkeit der Systemgr{\"o}ße und der Zeitverz{\"o}gerung untersucht. Zu guter Letzt wird eine Verstimmung der Einheiten, d.h., ein "parameter mismatch", eingef{\"u}hrt und analysiert wie diese das Verhalten der Attraktordimension {\"a}ndert. Im dritten und letzten Teil wird die lineare Antwort eines synchronisierten chaotischen Systems auf eine kleine externe St{\"o}rung untersucht. Diese St{\"o}rung bewirkt eine Abweichung der Einheiten vom perfekt synchronisierten Zustand. Die Verteilung der Abst{\"a}nde zwischen zwei Einheiten dient als Maß f{\"u}r die lineare Antwort des Systems. Diese Verteilung sowie ihre Momente werden numerisch und f{\"u}r Spezialf{\"a}lle auch analytisch berechnet. Wir finden, dass im synchronisierten Zustand, in Abh{\"a}ngigkeit der Parameter des Systems, Verteilungen auftreten k{\"o}nnen die einem Potenzgesetz gehorchen und dessen Momente divergieren. Als weiteres Maß f{\"u}r die lineare Antwort wird die Bit Error Rate einer {\"u}bermittelten bin{\"a}ren Nachricht verwendet. The Bit Error Rate ist durch ein Integral {\"u}ber die Verteilung der Abst{\"a}nde gegeben. In dieser Arbeit wird sie vorwiegend numerisch untersucht und wir finden ein komplexes, nicht monotones Verhalten als Funktion der Kopplungsst{\"a}rke. F{\"u}r Spezialf{\"a}lle weist die Bit Error Rate eine "devil's staircase" auf, welche mit einer fraktalen Struktur in der Verteilung der Abst{\"a}nde verkn{\"u}pft ist. Die lineare Antwort des Systems auf eine harmonische St{\"o}rung wird ebenfalls untersucht. Es treten Resonanzen auf, welche in Abh{\"a}ngigkeit von der Zeitverz{\"o}gerung unterdr{\"u}ckt oder verst{\"a}rkt werden. Eine bi-direktional gekoppelte Kette aus drei Einheiten kann eine St{\"o}rung vollst{\"a}ndig heraus filtern, so dass die Bit Error Rate und auch das zweite Moment verschwinden.}, subject = {Chaostheorie}, language = {en} } @article{Truswell2013, author = {Truswell, Arthur Stewart}, title = {Medical history of obesity}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-78910}, year = {2013}, abstract = {This paper contains the following sections, in approximate chronological order: Early years, Scientific research on energy metabolism, Clinical teaching, Evidence on health risks, Slow recognition of obesity in diabetes, Depression and war, some Obesity research continued in the 1950s and 1960s, New approaches to management, a Universal standard weight for height, Luxuskonsumption, Calories (incompletely) replaced by Joules, Food intakes of obese people, Genetics, unexpected Surge of obesity from 1980, Diabetes, Scarcity of effective, safe drugs for obesity, Leptin and Ghrelin stimulate basic research, Why has the obesity epidemic happened? What is the best weight-reducing diet? Bariatric surgery}, subject = {Fettsucht}, language = {en} } @article{KlementFrobelAlbersetal.2013, author = {Klement, Rainer Johannes and Frobel, Thomas and Albers, Torsten and Fikenzer, Sven and Prinzhausen, Jan and K{\"a}mmerer, Ulrike}, title = {A pilot case study on the impact of a self-prescribed ketogenic diet on biochemical parameters and running performance in healthy and physically active individuals}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-78901}, year = {2013}, abstract = {Background: Ketogenic diets (KDs) have gained some popularity not only as effective weight-loss diets and treatment options for several diseases, but also among healthy and physically active individuals for various reasons. However, data on the effects of ketosis in the latter group of individuals are scarce. We therefore collected pilot data on the physiological response to a self-prescribed ketogenic diet lasting 5-7 weeks in a small cohort of healthy and physically active individuals. Methods: Twelve subjects (7 males, 5 females, age 24-60 years) who followed moderate to intensive exercise routines underwent blood testing, bioelectrical impedance analysis (BIA) and spiroergometry during an incremental treadmill test. On the next day, they went on a self-prescribed KD for a median of 38 days (range 35-50 days), after which the same tests were performed again. Ketosis was self-monitored by urinary ketone strips. Subjective feeling during the diet was assessed by a questionnaire after the intervention. Due to the small and heterogenous sample, the results are interpreted in the context of the already existing literature. Results: The KDs were tolerated well by the majority of individuals. Impaired recovery from exercise remained the most frequently reported side effect until the end of the study. Most blood parameters remained stable during the intervention. However, there were significant elevations of total and LDL cholesterol concentrations (p<0.01) and a trend towards increased HDL-cholesterol (p=0.05). The drastic reduction of carbohydrates had no statistically significant influence on running performance judged by the time to exhaustion, VO2max and respiratory compensation points. BIA measurements showed significant increases in phase angle (p=0.01) indicating improvements of body composition with an estimated decrease of 3.4 kg of fat mass (p=0.002) and gain of 1.3 kg of fat free mass. We discuss the validity of these estimates taking into account a possibly altered hydration status due to the KD. Conclusions: Active healthy individuals will probably experience no major problems during a short term KD lasting several weeks. The drastically reduced carbohydrate content of the diet seems to be no limiting factor for running performance. In addition, improvements in body composition can be expected. While most biochemical parameters are not influenced by the diet, there seems to be an impact on the blood lipid profile that could be considered problematic with respect to cardiovascular disease risk. However, the predictive role of cholesterol levels alone in individuals undergoing regular physical activity remains to be elucidated.}, subject = {Fettgehalt}, language = {en} } @phdthesis{Pawlik2013, author = {Pawlik, Marie-Christin}, title = {Gene expression in the human pathogen Neisseria meningitidis: Adaptation to serum exposure and zinc limitation}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-78758}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2013}, abstract = {Neisseria meningitidis is a facultative human pathogen that occasionally shows strong resistance against serum complement exposure. Previously described factors that mediate meningococcal serum resistance are for example the capsule, LPS sialylation, and expression of the factor H binding protein. I aimed for identification of novel serum resistance factors, thereby following two approaches, i) the analysis of the impact of global regulators of gene expression on serum resistance; and ii) a comparative analysis of closely related strains differing in serum resistance. (i) Of six meningococcal global regulators of gene expression studied, only mutation of the zinc uptake regulator Zur reduced complement deposition on meningococci. Little was known about meningococcal Zur and regulatory processes in response to zinc. I therefore elucidated the yet unidentified meningococcal Zur regulon comparing the transcriptional response of the N. meningitidis strain MC58 under zinc-rich and zinc-deficient conditions using a common reference design of microarray analysis. The meningococcal Zur regulon comprises 17 genes, of which 15 genes were repressed and two genes were activated at high zinc condition. Amongst the Zur-repressed genes were genes involved in zinc uptake, tRNA modification, and ribosomal assembly. A 23 bp meningococcal consensus Zur binding motif (Zur box) with a conserved central palindrome was established (TGTTATDNHATAACA) and detected in the promoter region of all regulated transcriptional units (genes/operons). In vitro binding of meningococcal Zur to the Zur box of three selected genes was shown for the first time using EMSAs. Binding of meningococcal Zur to DNA depended specifically on zinc, and mutations in the palindromic sequence constrained Zur binding to the DNA motif. ii) Three closely related strains of ST-41/44 cc from invasive disease and carriage which differed in their resistance to serum complement exposure were analysed to identify novel mediators of serum resistance. I compared the strains' gene content by microarray analysis which revealed six genes being present in both carrier isolates, but absent in the invasive isolate. Four of them are part of two Islands of horizontally transferred DNA, i.e. IHT-B and -C. The working group furthermore applied a comprehensive screening assay, a transcriptome and a proteome analysis leading to identification of three target proteins. I contributed to establish the role of these three proteins in serum resistance: The adhesin Opc mediates serum resistance by binding of vitronectin, a negative regulator of the complement system; the hypothetical protein NMB0865 slightly contributes to serum resistance by a yet unknown mechanism; and NspA, recently identified to bind the negative complement regulator factor H, led to considerable reduced complement-mediated killing.}, subject = {Komplement }, language = {en} } @phdthesis{Sen2013, author = {Sen, Surath}, title = {Character Analysis and Numerical Computations of Standard M.I. Probability Distributions}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-78623}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2013}, abstract = {Development and character analysis of software programs, which compute minimum information probability distributions.}, subject = {Newton-Verfahren}, language = {en} } @phdthesis{Streinzer2013, author = {Streinzer, Martin}, title = {Sexual dimorphism of the sensory systems in bees (Hymenoptera, Apoidea) and the evolution of sex-specific adaptations in the context of mating behavior}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-78689}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2013}, abstract = {Bees have had an intimate relationship with humans for millennia, as pollinators of fruit, vegetable and other crops and suppliers of honey, wax and other products. This relationship has led to an extensive understanding of their ecology and behavior. One of the most comprehensively understood species is the Western honeybee, Apis mellifera. Our understanding of sex-specific investment in other bees, however, has remained superficial. Signals and cues employed in bee foraging and mating behavior are reasonably well understood in only a handful of species and functional adaptations are described in some species. I explored the variety of sensory adaptations in three model systems within the bees. Females share a similar ecology and similar functional morphologies are to be expected. Males, engage mainly in mating behavior. A variety of male mating strategies has been described which differ in their spatiotemporal features and in the signals and cues involved, and thus selection pressures. As a consequence, males' sensory systems are more diverse than those of females. In the first part I studied adaptations of the visual system in honeybees. I compared sex and caste-specific eye morphology among 5 species (Apis andreniformis, A. cerana, A. dorsata, A. florea, A. mellifera). I found a strong correlation between body size and eye size in both female castes. Queens have a relatively reduced visual system which is in line with the reduced role of visual perception in their life history. Workers differed in eye size and functional morphology, which corresponds to known foraging differences among species. In males, the eyes are conspicuously enlarged in all species, but a disproportionate enlargement was found in two species (A. dorsata, A. florea). I further demonstrate a correlation between male visual parameters and mating flight time, and propose that light intensities play an important role in the species-specific timing of mating flights. In the second study I investigated eye morphology differences among two phenotypes of drones in the Western honeybee. Besides normal-sized drones, smaller drones are reared in the colony, and suffer from reduced reproductive success. My results suggest that the smaller phenotype does not differ in spatial resolution of its visual system, but suffers from reduced light and contrast sensitivity which may exacerbate the reduction in reproductive success caused by other factors. In the third study I investigated the morphology of the visual system in bumblebees. I explored the association between male eye size and mating behavior and investigated the diversity of compound eye morphology among workers, queens and males in 11 species. I identified adaptations of workers that correlate with distinct foraging differences among species. Bumblebee queens must, in contrast to honeybees, fulfill similar tasks as workers in the first part of their life, and correspondingly visual parameters are similar among both female castes. Enlarged male eyes are found in several subgenera and have evolved several times independently within the genus, which I demonstrate using phylogenetic informed statistics. Males of these species engage in visually guided mating behavior. I find similarities in the functional eye morphology among large-eyed males in four subgenera, suggesting convergent evolution as adaptation to similar visual tasks. In the remaining species, males do not differ significantly from workers in their eye morphology. In the fourth study I investigated the sexual dimorphism of the visual system in a solitary bee species. Males of Eucera berlandi patrol nesting sites and compete for first access to virgin females. Males have enlarged eyes and better spatial resolution in their frontal eye region. In a behavioral study, I tested the effect of target size and speed on male mate catching success. 3-D reconstructions of the chasing flights revealed that angular target size is an important parameter in male chasing behavior. I discuss similarities to other insects that face similar problems in visual target detection. In the fifth study I examined the olfactory system of E. berlandi. Males have extremely long antennae. To investigate the anatomical grounds of this elongation I studied antennal morphology in detail in the periphery and follow the sexual dimorphism into the brain. Functional adaptations were found in males (e.g. longer antennae, a multiplication of olfactory sensilla and receptor neurons, hypertrophied macroglomeruli, a numerical reduction of glomeruli in males and sexually dimorphic investment in higher order processing regions in the brain), which were similar to those observed in honeybee drones. The similarities and differences are discussed in the context of solitary vs. eusocial lifestyle and the corresponding consequences for selection acting on males.}, subject = {Biene}, language = {en} } @unpublished{GeiselhartGielenLazaretal.2013, author = {Geiselhart, Roman and Gielen, Rob H. and Lazar, Mircea and Wirth, Fabian R.}, title = {An Alternative Converse Lyapunov Theorem for Discrete-Time Systems}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-78512}, year = {2013}, abstract = {This paper presents an alternative approach for obtaining a converse Lyapunov theorem for discrete-time systems. The proposed approach is constructive, as it provides an explicit Lyapunov function. The developed converse theorem establishes existence of global Lyapunov functions for globally exponentially stable (GES) systems and semi-global practical Lyapunov functions for globally asymptotically stable systems. Furthermore, for specific classes of sys- tems, the developed converse theorem can be used to establish non-conservatism of a particular type of Lyapunov functions. Most notably, a proof that conewise linear Lyapunov functions are non-conservative for GES conewise linear systems is given and, as a by-product, tractable construction of polyhedral Lyapunov functions for linear systems is attained.}, subject = {Ljapunov-Funktion}, language = {en} }