@phdthesis{Braun2021, author = {Braun, Alexandra}, title = {Psychosocial and somatic resilience factors of patients with fibromyalgia syndrome (FMS)}, doi = {10.25972/OPUS-24280}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-242809}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {Background: In recent years, health care has increasingly become the focus of public interest, politics, health insurance companies, and research. This includes the development of therapeutic concepts that can respond individually to patients' resources in order to improve coping with chronic diseases. Research into psychosocial and biological resilience factors is very important and the basic objective of the present work. I studied patients with fibromyalgia syndrome (FMS), who suffer among others from chronic pain, fatigue, sleep and gastrointestinal problems. This patient cohort is characterized by a pronounced heterogeneity in terms of clinical outcome, degree in disability and coping. FMS has a prevalence of 3 - 8 \% in the Western population and has a significant socio-economic impact. Validated psychosocial resilience factors include optimism, humor, coherence, self-efficacy, awareness with one's own resources and the ability to apply them profitably (coping), and a healthy social environment with positive relationships. Studies in patients with cancer revealed religiosity as positive and negative factor on the health outcome, but there is little data on religious aspects of pain resilience. Various genetic polymorphisms and anti-inflammatory cytokines are known as biological resilience factors. Various microRNA (miRNA) were detected to contribute to resilience in the context of stress and psychiatric disorders. Objective: The underlying research question of this work is to understand the factors that make some FMS patients resilient and others not, even though they suffer from the same disease. The long-term aim was to understand mechanisms and influencing factors of resilience to design preventive and resource-oriented therapies for FMS patients. Material and Methods: Three studies examined religious, physiological, biological, and psychosocial factors which may contribute to resilience in FMS patients. Study one combined data of questionnaires, a psychosocial interview, and regression analyses to investigate the relevance of religiosity for coping and resilience. Study two examined variance explaining factors and defined clusters among FMS patients by their differences in coping, pain phenotype and disability. The factor analysis used variables derived from questionnaires and qPCR of cytokines in white blood samples (WBC) of patients and healthy controls. Study three assessed cluster-wise miRNA signatures which may underly differences in behaviour, emotional and physiological disability, and resilience among patient clusters. A cluster-specific speculative model of a miRNA-mediated regulatory cycle was proposed and its potential targets verified by an online tool. Results: The data from the first study revealed a not very religious patient cohort, which was rather ambivalent towards the institution church, but described itself as a believer. The degree of religiosity played a role in the choice of coping strategy but had no effect on psychological parameters or health outcomes. The coping strategy "reinterpretation", which is closely related iv to the religious coping "reappraisal", had the highest influence on FMS related disability. Cognitive active coping strategies such as reappraisal which belongs to religious coping had the highest effect on FMS related disability (resilience) and could be trained by a therapist. Results from the second study showed high variances of all measured cytokines within the patient group and no difference between patient and control group. The high dispersion indicated cluster among patients. Factor analysis extracted four variance-explaining factors named as affective load, coping, pain, and pro-inflammatory cytokines. Psychological factors such as depression were the most decisive factors of everyday stress in life and represented the greatest influence on the variance of the data. Study two identified four clusters with respective differences in the factors and characterized them as poorly adapted (maladaptive), well adapted (adaptive), vulnerable and resilient. Their naming was based on characteristics of both resilience concepts, indicated by patients who were less stress-sensitive and impaired as a personal characteristic and by patients who emerged as more resilient from a learning and adaptive process. The data from the variance analysis suggests that problem- and emotion-focused coping strategies and a more anti-inflammatory cytokine pattern are associated with low impairment and contribute to resilience. Additional favorable factors include low anxiety, acceptance, and persistence. Some cluster-specific intervention proposals were created that combine existing concepts of behavioral and mindfulness therapies with alternative therapies such as vitamin D supplementation and a healthy intestinal flora. The results of the third study revealed lower relative gene expression of miR103a-3p, miR107, and miR130a-3p in the FMS cohort compared to the healthy controls with a large effect size. The adaptive cluster had the highest gene expression of miR103a-3p and tendentially of miR107, which was correlated with the subscale score "physical abuse" of the trauma questionnaire. Further correlations were found in particular with pain catastrophizing and FMS-related disability. MiR103a-3p and miR107 form a miRNA-family. Based on this, we proposed a miR103a/107 regulated model of an adaptive process to stress, inflammation and pain by targeting genetic factors which are included in different anti-inflammatory and stress-regulating pathways. Conclusion: All three studies provide new insights into resilience in FMS patients. Cognitive coping (reappraisal/reinterpretation) plays a central role and thus offers therapeutic targets (reframing in the context of behavioral therapy). Religosity as a resilience factor was only partially valid for our patient cohort. Basically, the use of resource-oriented therapy in large institutions still requires research and interdisciplinary cooperation to create a consensus between the humanities, natural sciences and humanism.}, subject = {Resilienz}, language = {en} } @phdthesis{Kramer2021, author = {Kramer, Alexander}, title = {Orbit control of a very small satellite using electric propulsion}, isbn = {978-3-945459-34-8 (online)}, doi = {10.25972/OPUS-24155}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-241552}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {Miniaturized satellites on a nanosatellite scale below 10kg of total mass contribute most to the number of launched satellites into Low Earth Orbit today. This results from the potential to design, integrate and launch these space missions within months at very low costs. In the past decade, the reliability in the fields of system design, communication, and attitude control have matured to allow for competitive applications in Earth observation, communication services, and science missions. The capability of orbit control is an important next step in this development, enabling operators to adjust orbits according to current mission needs and small satellite formation flight, which promotes new measurements in various fields of space science. Moreover, this ability makes missions with altitudes above the ISS comply with planned regulations regarding collision avoidance maneuvering. This dissertation presents the successful implementation of orbit control capabilities on the pico-satellite class for the first time. This pioneering achievement is demonstrated on the 1U CubeSat UWE-4. A focus is on the integration and operation of an electric propulsion system on miniaturized satellites. Besides limitations in size, mass, and power of a pico-satellite, the choice of a suitable electric propulsion system was driven by electromagnetic cleanliness and the use as a combined attitude and orbit control system. Moreover, the integration of the propulsion system leaves the valuable space at the outer faces of the CubeSat structure unoccupied for future use by payloads. The used NanoFEEP propulsion system consists of four thruster heads, two neutralizers and two Power Processing Units (PPUs). The thrusters can be used continuously for 50 minutes per orbit after the liquefaction of the propellant by dedicated heaters. The power consumption of a PPU with one activated thruster, its heater and a neutralizer at emitter current levels of 30-60μA or thrust levels of 2.6-5.5μN, respectively, is in the range of 430-1050mW. Two thruster heads were activated within the scope of in-orbit experiments. The thrust direction was determined using a novel algorithm within 15.7° and 13.2° of the mounting direction. Despite limited controllability of the remaining thrusters, thrust vector pointing was achieved using the magnetic actuators of the Attitude and Orbit Control System. In mid 2020, several orbit control maneuvers changed the altitude of UWE-4, a first for pico-satellites. During the orbit lowering scenario with a duration of ten days, a single thruster head was activated in 78 orbits for 5:40 minutes per orbit. This resulted in a reduction of the orbit altitude by about 98.3m and applied a Delta v of 5.4cm/s to UWE-4. The same thruster was activated in another experiment during 44 orbits within five days for an average duration of 7:00 minutes per orbit. The altitude of UWE-4 was increased by about 81.2m and a Delta v of 4.4cm/s was applied. Additionally, a collision avoidance maneuver was executed in July 2020, which increased the distance of closest approach to the object by more than 5000m.}, subject = {Kleinsatellit}, language = {en} } @article{HomburgWeissAlwanetal.2021, author = {Homburg, Annika and Weiß, Christian H. and Alwan, Layth C. and Frahm, Gabriel and G{\"o}b, Rainer}, title = {A performance analysis of prediction intervals for count time series}, series = {Journal of Forecasting}, volume = {40}, journal = {Journal of Forecasting}, number = {4}, doi = {10.1002/for.2729}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-217906}, pages = {603 -- 609}, year = {2021}, abstract = {One of the major motivations for the analysis and modeling of time series data is the forecasting of future outcomes. The use of interval forecasts instead of point forecasts allows us to incorporate the apparent forecast uncertainty. When forecasting count time series, one also has to account for the discreteness of the range, which is done by using coherent prediction intervals (PIs) relying on a count model. We provide a comprehensive performance analysis of coherent PIs for diverse types of count processes. We also compare them to approximate PIs that are computed based on a Gaussian approximation. Our analyses rely on an extensive simulation study. It turns out that the Gaussian approximations do considerably worse than the coherent PIs. Furthermore, special characteristics such as overdispersion, zero inflation, or trend clearly affect the PIs' performance. We conclude by presenting two empirical applications of PIs for count time series: the demand for blood bags in a hospital and the number of company liquidations in Germany.}, language = {en} } @phdthesis{Poehner2021, author = {P{\"o}hner, Nicolai}, title = {Educational robotics competitions as out-of-school learning setting for STEM education: An empirical study on students' learning of problem solving skills through participation in the World Robot Olympiad}, doi = {10.25972/OPUS-24317}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-243179}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {Educational robotics is an innovative approach to teaching and learning a variety of different concepts and skills as well as motivating students in the field of Science, Technology, Engineering, and Mathematics (STEM) education. This especially applies to educational robotics competitions such as, for example, the FIRST LEGO League, the RoboCup Junior, or the World Robot Olympiad as out-of-school and goal-oriented approach to educational robotics. These competitions have gained greatly in popularity in recent years and thousands of students participate in these competitions worldwide each year. Moreover, the corresponding technology became more accessible for teachers and students to use it in their classrooms and has arguably a high potential to impact the nature of science education at all levels. One skill, which is said to be benefitting from educational robotics, is problem solving. This thesis understands problem solving skills as engineering design skills (in contrast to scientific inquiry). Problem solving skills count as important skills as demanded by industry leaders and policy makers in the context of 21st century skills, which are relevant for students to be well-prepared for their future working life in today's world, shaped by an ongoing process of automation, globalization, and digitalization. The overall aim of this thesis is to try to answer the question if educational robotics competitions such as the World Robot Olympiad (WRO) have a positive impact on students' learning in terms of their problem solving skills (as part of 21st century skills). In detail, this thesis focuses on a) if students can improve their problem solving skills through participation in educational robotics competitions, b) how this skill development is accomplished, and c) the teachers' support of their students during their learning process in the competition. The corresponding empirical studies were conducted throughout the seasons of 2018 and 2019 of the WRO in Germany. The results show overall positive effects of the participation in the WRO on students' learning of problem solving skills. They display an increase of students' problem solving skills, which is not moderated by other variables such as the competition's category or age group, the students' gender or experience, or the success of the teams at the competition. Moreover, the results indicate that students develop their problem solving skills by using a systematic engineering design process and sophisticated problem solving strategies. Lastly, the teacher's role in the educational robotics competitions as manager and guide (in terms of the constructionist learning theory) of the students' learning process (especially regarding the affective level) is underlined by the results of this thesis. All in all, this thesis contributes to the research gap concerning the lack of systematic evaluation of educational robotics to promote students' learning by providing more (methodologically) sophisticated research on this topic. Thereby, this thesis follows the call for more rigorous (quantitative) research by the educational robotics community, which is necessary to validate the impact of educational robotics.}, subject = {Fachdidaktik}, language = {en} } @phdthesis{MokayRinke2021, author = {Mokay-Rinke, Shiloe Marie}, title = {The Integration of Female Refugees in Germany: Perspectives of Women and an Analysis of Federal and Selected State and City Integration Policies from 1998 to 2019}, doi = {10.25972/OPUS-24304}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-243047}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {The following study, The Integration of Female Refugees in Germany: Perspectives of Women and an Analysis of Federal and Selected State and City Integration Policies from 1998-2019, is focused on the qualitative analysis of integration policy in Germany regarding female refugees. The states of North Rhine-Westphalia, Bavaria, and Saxony-Anhalt have been selected for this dissertation as well as the cities of Cologne, Wuerzburg, and Magdeburg. Through an analysis and comparison of integration policies and programs on the federal and selected state and city levels the question will be answered how recognized female refugees are taken into account with the development and formulation of integration policy in Germany. The analysis is then complemented through interviews with recognized female refugees in each of the states and cities. Through analyzing the results of the interviews the question will be answered how the women view their situation and integration. Through a comparison of the findings from the policy analysis and the interviews it will then be able to decipher if integration policies and programs are truly reaching their target group, if they are effective, or what hurdles they may be producing. The goal of the study is to provide initial findings on the overall integration of recognized female refugees in Germany in connection to integration policies in order to discover potential deficits or ineffective programs and policies which can then be further researched in order to produce concrete policy suggestions.}, subject = {Organisation}, language = {en} } @phdthesis{Georgiev2021, author = {Georgiev, Kostadin}, title = {Sustainable management of naturally disturbed forests}, doi = {10.25972/OPUS-24285}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-242854}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {Owing to climate change, natural forest disturbances and consecutive salvage logging are drastically increasing worldwide, consequently increasing the importance of understanding how these disturbances would affect biodiversity conservation and provision of ecosystem services. In chapter II, I used long-term water monitoring data and mid-term data on α-diversity of twelve species groups to quantify the effects of natural disturbances (windthrow and bark beetle) and salvage logging on concentrations of nitrate and dissolved organic carbon (DOC) in streamwater and α-diversity. I found that natural disturbances led to a temporal increase of nitrate concentrations in streamwater, but these concentrations remained within the health limits recommended by the World Health Organization for drinking water. Salvage logging did not exert any additional impact on nitrate and DOC concentrations, and hence did not affect streamwater quality. Thus, neither natural forest disturbances in watersheds nor associated salvage logging have a harmful effect on the quality of the streamwater used for drinking water. Natural disturbances increased the α-diversity in eight out of twelve species groups. Salvage logging additionally increased the α-diversity of five species groups related to open habitats, but decreased the biodiversity of three deadwood-dependent species groups. In chapter III, I investigated whether salvage logging following natural disturbances (wildfire and windthrow) altered the natural successional trajectories of bird communities. I compiled data on breeding bird assemblages from nine study areas in North America, Europe and Asia, over a period of 17 years and tested whether bird community dissimilarities changed over time for taxonomic, functional and phylogenetic diversity when rare, common and dominant species were weighted differently. I found that salvage logging led to significantly larger dissimilarities than expected by chance and that these dissimilarities persisted over time for rare, common and dominant species, evolutionary lineages, and for rare functional groups. Dissimilarities were highest for rare, followed by common and dominant species. In chapter IV, I investigated how β-diversity of 13 taxonomic groups would differ in intact, undisturbed forests, disturbed, unlogged forests and salvage-logged forests 11 years after a windthrow and salvage logging. The study suggests that both windthrow and salvage logging drive changes in between-treatment β-diversity, whereas windthrow alone seems to drive changes in within-treatment β-diversity. Over a decade after the windthrow at the studied site, the effect of subsequent salvage logging on within-treatment β-diversity was no longer detectable but the effect on between-treatment β-diversity persisted, with more prominent changes in saproxylic groups and rare species than in non-saproxylic groups or common and dominant species. Based on these results, I suggest that salvage logging needs to be carefully weighed against its long-lasting impact on communities of rare species. Also, setting aside patches of naturally disturbed areas is a valuable management alternative as these patches would enable post-disturbance succession of bird communities in unmanaged patches and would promote the conservation of deadwood-dependent species, without posing health risks to drinking water sources.}, subject = {species richness}, language = {en} } @phdthesis{Roeschert2021, author = {R{\"o}schert, Isabelle}, title = {Aurora-A prevents transcription-replication conflicts in MYCN-amplified neuroblastoma}, doi = {10.25972/OPUS-24303}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-243037}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {Neuroblastoma is the most abundant, solid, extracranial tumor in early childhood and the leading cause of cancer-related childhood deaths worldwide. Patients with high-risk neuroblastoma often show MYCN-amplification and elevated levels of Aurora-A. They have a low overall survival and despite multimodal therapy options a poor therapeutic prognosis. MYCN-amplified neuroblastoma cells depend on Aurora-A functionality. Aurora-A stabilizes MYCN and prevents it from proteasomal degradation by competing with the E3 ligase SCFFBXW7. Interaction between Aurora-A and MYCN can be observed only in S phase of the cell cycle and activation of Aurora-A can be induced by MYCN in vitro. These findings suggest the existence of a profound interconnection between Aurora-A and MYCN in S phase. Nevertheless, the details remain elusive and were investigated in this study. Fractionation experiments show that Aurora-A is recruited to chromatin in S phase in a MYCN-dependent manner. Albeit being unphosphorylated on the activating T288 residue, Aurora-A kinase activity was still present in S phase and several putative, novel targets were identified by phosphoproteomic analysis. Particularly, eight phosphosites dependent on MYCN-activated Aurora-A were identified. Additionally, phosphorylation of serine 10 on histone 3 was verified as a target of this complex in S phase. ChIP-sequencing experiments reveal that Aurora-A regulates transcription elongation as well as histone H3.3 variant incorporation in S phase. 4sU-sequencing as well as immunoblotting demonstrated that Aurora-A activity impacts splicing. PLA measurements between the transcription and replication machinery revealed that Aurora-A prevents the formation of transcription-replication conflicts, which activate of kinase ATR. Aurora-A inhibitors are already used to treat neuroblastoma but display dose-limiting toxicity. To further improve Aurora-A based therapies, we investigated whether low doses of Aurora-A inhibitor combined with ATR inhibitor could increase the efficacy of the treatment albeit reducing toxicity. The study shows that the combination of both drugs leads to a reduction in cell growth as well as an increase in apoptosis in MYCN-amplified neuroblastoma cells, which is not observable in MYCN non-amplified neuroblastoma cells. This new approach was also tested by a collaboration partner in vivo resulting in a decrease in tumor burden, an increase in overall survival and a cure of 25\% of TH-MYCN mice. These findings indicate indeed a therapeutic window for targeting MYCN-amplified neuroblastoma.}, subject = {Neuroblastom}, language = {en} } @phdthesis{LopezArboleda2021, author = {L{\´o}pez Arboleda, William Andr{\´e}s}, title = {Global Genetic Heterogeneity in Adaptive Traits}, doi = {10.25972/OPUS-24246}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-242468}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {Genome Wide Association Studies (GWAS) have revolutionized the way on how genotype-phenotype relations are assessed. In the 20 years long history of GWAS, multiple challenges from a biological, computational, and statistical point of view have been faced. The implementation of this technique using the model plant species Arabidopsis thaliana, has enabled the detection of many association for multiple traits. Despite a lot of studies implementing GWAS have discovered new candidate genes for multiple traits, different samples are used across studies. In many cases, either globally diverse samples or samples composed of accessions from a geographically restricted area are used. With the aim of comparing GWAS outcomes between populations from different geographic areas, this thesis describes the performance of GWAS in different European samples of A. thaliana. Here, association mapping results for flowering time were compared. Chapter 2 describes the analyses of random resampling from this original sample. The aim was to establish reduced subsamples to later carry out GWAS and compare the outcomes between these subsamples. In Chapter 3, the European sample was split into eight equally-sized local samples representing different geographic regions. Next, GWAS was carried out and an attempt was made to clarify the differences in GWAS outcomes. Chapter 4 contains the results of a collaboration with Prof. Dr. Wolfgang Dr{\"o}ge- Laser, in which my mainly task was the analysis of RNAseq data from A. thaliana plants infected by pathogenic fungi. Finally, Appendix A presents a very short description of my participation in the GHP Project on Access to Care for Cardiometabolic Diseases (HPACC) at the university of Heidelberg.}, language = {en} } @phdthesis{Crumbach2021, author = {Crumbach, Merian}, title = {Modifying the Optoelectronic Properties of Polycyclic Aromatic Hydrocarbons and Linear Oligomers by Doping with Boron and Further Heteroatoms}, doi = {10.25972/OPUS-24284}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-242845}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {Der Austausch ausgew{\"a}hlter CC-Einheiten durch ihre isoelektronischen und isosteren BN-Einheiten in π-konjugierten organischen Verbindungen (BN/CC-Isosterie), insbesondere in polyzyklischen aromatischen Kohlenwasserstoffen (PAKs), hat sich als erfolgreiche Strategie zur Herstellung neuartiger organisch-anorganischer Hybridmaterialien erwiesen, die strukturelle {\"A}hnlichkeiten mit ihren reinen Kohlenstoff Analoga aufweisen, aber in vielen F{\"a}llen mit ver{\"a}nderten faszinierenden Eigenschaften und Funktionen. In den ersten beiden Kapiteln werden die Synthese und Eigenschaften von neuartigen BNB-dotierten Phenalenylen, Dithienoazadiborepinen und Dithienooxadiborepinen vorgestellt. Die optoelektronischen Eigenschaften dieser neuen Bauelemente k{\"o}nnen durch Variation der eingebauten Ar- (Mes, Tip, FMes) und R-Gruppen (H, Me, i-Pr, t-Bu, Ph) effektiv eingestellt werden. Theoretische Untersuchungen, einschließlich NICS (Nucleus Independent Chemical Shift) Scans und AICD (Anisotropy of the Induced Current Density)-Berechnungen, wurden durchgef{\"u}hrt und geben Einblick in ihren aromatischen oder antiaromatischen Charakter. Der Einbau von BP-Einheiten, welche mit BN und CC valenz-isoelektronisch sind, in unges{\"a}ttigte organische Verbindungen ist dagegen bisher kaum untersucht worden, obwohl das Potenzial der resultierenden BCP-Hybridmaterialien f{\"u}r elektronische Anwendungen erst k{\"u}rzlich erkannt wurde. Konjugierte Hauptkettenpolymere mit BP-Fragmenten im R{\"u}ckgrat sind bisher unbekannt. Die ersten molekularen Modellverbindungen f{\"u}r ein BP-Analogon des konjugierten Polymers Poly(p-phenylen-vinylen) (PPV) werden in Kapitel 3 vorgestellt. Theoretische Untersuchungen ergaben, dass die Mes*-Gruppe das Phosphor-zentrum vollst{\"a}ndig planarisiert, wodurch der B=P-Doppelbindungscharakter verst{\"a}rkt und eine Konjugation {\"u}ber die BP-Einheit erm{\"o}glicht wird. Es wurden verschiedene synthetische Ans{\"a}tze zu diesen molekularen Modellverbindungen untersucht und eine erfolgreiche synthetische Strategie gefunden.}, subject = {Aromatizit{\"a}t}, language = {en} } @techreport{MetzgerSchroederRafetseder2021, type = {Working Paper}, author = {Metzger, Florian and Schr{\"o}der, Svenja and Rafetseder, Albert}, title = {Subjective And Objective Assessment Of Video Game Context Factors}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-242471}, pages = {7}, year = {2021}, abstract = {The recently published ITU-T Recommendation G1.032 proposes a list of factors that may influence cloud and online gaming Quality of Experience (QoE). This paper provides two practical evaluations of proposed system and context influence factors: First, it investigates through an online survey (n=488) the popularity of platforms, preferred ways of distribution, and motivational aspects including subjective valuations of characteristics offered by today's prevalent gaming platforms. Second, the paper evaluates a large dataset of objective metrics for various gaming platforms: game lists, playthrough lengths, prices, etc., and contrasts these metrics against the gamers' opinions. The combined data-driven approach presented in this paper complements in-person and lab studies usually employed.}, subject = {Videospiel}, language = {en} } @phdthesis{Macher2021, author = {Macher, Sven}, title = {On the Effects of Moisture on Polymer-Based Electrochromic Devices}, doi = {10.25972/OPUS-24240}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-242407}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {The present work builds on a conjugated electrochromic polymer with a highly transmissive and colorless bright state and its application in electrochromic devices. The main body of this work focuses on the investigation of the influence of moisture on electrochromic devices and solutions to overcome possible degradation of these devices due to moisture ingress. Firstly, a series of EDOT derivatives with a terminal double bond in the lateral sidechain to potentially achieve a highly transmissive and fully colorless bright state was investigated. All of the EDOT derivatives were electrochemically polymerized and characterized by means of (in-situ) spectroelectrochemistry. The results highlight the dramatic influence of the terminal double bond on the improved visible light transmittance and color neutrality in the bright state. After detailed evaluation and comparison, the best performing compound, which contains a hexenyl sidechain (PEDOT-EthC6), was scaled-up by changing the deposition technique from an electrochemical to a chemical in-situ polymerization process on a R2R-pilot line in an industrially relevant environment. The R2R-processed PEDOTEthC6 half-cells were characterized in detail and provide enhanced electrochromic properties in terms of visible light transmittance and color neutrality in the bright state as well as short response times, improved contrast ratio, coloration efficiency and cycling stability (10 000 cycles).[21] In a second step, the novel PEDOT-EthC6 electrochromic polymer was combined with a Prussian Blue counter electrode and a solid polymer electrolyte to form an all-solid-sate ECDs based on complementary switching electrodes and PET-ITO as flexible substrates. The fabricated ECDs were optically and spectroelectrochemically characterized. Excellent functionality of the S2S-processed flexible ECDs was maintained throughout 10 000 switching cycles under laboratory conditions. The ECDs offer enhanced electrochromic properties in terms of visible light transmittance change and color neutrality in the bright state as well as contrast ratio, coloration efficiency, cycling stability and fast response times. Furthermore, the final device assembly was transferred from a S2S-process to a continuous R2R-lamination process.[238] In a third step, the PEDOT-EthC6/PB-based ECDs were submitted to conscious environmental aging tests. The emphasis of the research presented in this work, was mainly put at the influence of moisture and possible failure mechanisms regarding the PEDOT-EthC6/PB based ECDs. An intense brown coloration of the electrodes was observed while cycling the ECDs in humid atmospheres (90\% rH) as a major degradation phenomenon. The brown coloration and a thereby accompanied loss of conductivity of the PET-ITO substrates was related to significant degradation of the ITO layers, inserted as the conductive layers in the flexible ECDs. A dissolution of the ITO thin films and formation of metallic indium particles on the surface of the ITO layers was observed that harmed the cycling stability enormously. The conductive layers of the aged ECDs were investigated by XRD, UV-Vis, SEM and spectroelectrochemical measurements and validated the supposed irreversible reduction of the ITO layers.[279] In the absence of reasonable alternatives to PET-ITO for flexible (R2R-processed) ECDs, it is also important to investigate measures to avoid the degradation of ECDs. This is primarily associated with the avoidance of appropriate electrode potentials necessary for ITO reduction in humid atmospheres. As an intrinsic action point, the electrode potentials were investigated via electrochemical measurements in a three-electrode setup of an all-solid-state ECD. Extensive knowledge on the electrode potentials allowed the voltage-induced degradation of the ITO in flexible ECDs to be avoided through the implementation of an unbalanced electrode configuration (charge density ratio of working and counter electrode). It was possible to narrow the overall operational voltage window to an extent in which irreversible ITO reduction no longer occurs. The unbalanced electrode configuration lead to an improved cycling stability without harming other characteristics such as response time and light transmittance change and allows ECD operation in the presence of humidity.[279] The avoidance of the mentioned degradation phenomena is further associated with appropriate sealing methods and materials as well as appropriate electrode and device fabrication processes. Since a variety of sealing materials is commercially available, due to the commercial launch of organic photovoltaic (OPV) and light emitting diodes (OLEDs), the focus in the present work was put to water-free electrode fabrication. As an extrinsic action point, a novel preparation method of a nanoscale PEDOT-EthC6 dispersion based on organic solvents is presented here in a final step. The water-free processing method gives access to straightforward printing and coating processes on flexible PET-ITO substrates and thus represents a promising and simplified alternative to the established PEDOT:PSS. The resulting nano-PEDOT-EthC6 thin films exhibit enhanced color neutrality and transmissivity in the bright state and are comparable to the properties of the in-situ polymerized PEDOT-EthC6 thin films.[280]}, subject = {Elektrochromie}, language = {en} } @phdthesis{daCruzGueerisoli2021, author = {da Cruz G{\"u}erisoli, Irene Maria}, title = {Investigating the murine meiotic telomere complex TERB1-TERB2-MAJIN: spatial organization and evolutionary history}, doi = {10.25972/OPUS-21056}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-210562}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {Einess der faszinierenden Merkmale der meiotischen Prophase I sind die hochkonservierten kr{\"a}ftigen Bewegungen homologer Chromosomen. Diese Bewegungen sind entscheidend f{\"u}r den Erfolg von Schl{\"u}sselereignissen wie die Ausrichtung, Paarung und Rekombination der homologen Chromosomen. Mehrere bisher untersuchte Organismen, darunter S{\"a}ugetiere, W{\"u}rmer, Hefen und Pflanzen, erreichen diese Bewegungen, indem sie die Chromosomenenden an spezialisierten Stellen in der Kernh{\"u}lle verankern. Diese Verankerung erfordert Telomer-Adapterproteine, die bisher in der Spalthefe und der Maus identifiziert wurden. Die meiosespezifischen Telomer-Adapterproteine der Maus, TERB1, TERB2 und MAJIN, sind an der Verankerung des ubiquit{\"a}ren Telomer-Shelterin-protein an den LINC-Komplex beteiligt, mit einem analogen Mechanismus, wie er die Spalthefe beschrieben wird. Obgleich die meiose-spezifischen TelomerAdapterproteine eine wesentliche Rolle spielen, ist der genaue Mechanismus der Verankerung der Telomere an die Kernh{\"u}lle sowie ihre evolution{\"a}re Geschichte bisher noch wenig verstanden. Das Hauptziel dieser Arbeit ist daher die Untersuchung der Organisation des meiosespezifischen TelomerAdapterkomplexes TERB1-TERB2-MAJIN der Maus und dessen Evolutionsgeschichte. Im ersten Teil dieser Arbeit wurde die Organisation des TERB1-TERB2-MAJIN Komplexes mittels hochaufl{\"o}sender Mikroskopie (SIM), an Mausspermatozyten untersucht, sowie die Lokalisation in Bezug auf TRF1 des Telomer-ShelterinKomplexes und die telomerische DNA analysiert. In den Stadien Zygot{\"a}n und Pachyt{\"a}n zeigten die Fluoreszenzsignale eine starke {\"U}berlappung der Verteilung der meiotischen Telomer-Komplex-Proteine, wobei die Organisation von TERB2 an den Chromosomenenden heterogener war als die von TERB1 und MAJIN. Außerdem konnte die TRF1-Lokalisation an den Enden der Lateralelemente (LEs) mit einer griffartigen Anordnung um die TERB1- und MAJIN-Signale im Zygot{\"a}n- und Pachyt{\"a}n-Stadium gezeigt werden. Interessanterweise erwies sich die telomerische DNA als lateral verteilt und teilweise {\"u}berlappend mit der zentralen Verteilung der meiotischen Telomer-Komplex-Proteine an den Enden der LEs. Die Kombination dieser Ergebnisse erlaubte die Beschreibung eines alternativen Modells der Verankerung der Telomer an die Kernh{\"u}lle w{\"a}hrend der meiotischen Prophase I. Der zweite Teil dieser Arbeit analysiert die Evolutionsgeschichte der Mausproteine von TERB1, TERB2 und MAJIN. Die fehlende {\"U}bereinstimmung zwischen den Meiose-spezifische Telomer-Adapteproteinen der Maus und der Spalthefe hat die Frage nach dem evolutionsbedingten Ursprung dieses spezifischen Komplexes aufgeworfen. Um vermeintliche Orthologen der Mausproteinevon TERB1, TERB2 und MAJIN {\"u}ber Metazoen hinweg zu identifizieren, wurden computergest{\"u}tzte Verfahren und phylogenetische Analysen durchgef{\"u}hrt. Dar{\"u}ber hinaus wurden Expressionsstudien implementiert, um ihre potenzielle Funktion w{\"a}hrend der Meiose zu testen. Die Analysen haben ergeben, dass der Meiose-spezifische Telomer-Komplex der Maus sehr alt ist, da er bereits in den Eumetazoen entstand, was auf einen einzigen Ursprung hindeutet. Das Fehlen jeglicher Homologen des meiosespezifischen Telomerkomplexes in Nematoden und die einigen wenigen in Arthropoden nachgewiesenen Kandidaten, deuten darauf hin, dass die Telomer-Adapterproteine in diesen Abstammungslinien verloren/ersetzt oder stark diversifiziert worden sind. Bemerkenswerterweise zeigten Proteindom{\"a}nen von TERB1, TERB2 und MAJIN, die an der Bildung des Komplexes sowie an der Interaktion mit dem Telomer-Shelterin-Protein und den LINC-Komplexen beteiligt sind, eine hohe Sequenz{\"a}hnlichkeit {\"u}ber alle Kladen hinweg. Abschließend lieferte die Genexpression im Nesseltier Hydra vulgaris den Beweis, dass der TERB1-TERB2-MAJIN-Komplex selektiv in der Keimbahn exprimiert wird, was auf die Konservierung meiotischer Funktionen {\"u}ber die gesamte Metazoen-Evolution hinweg hindeutet. Zusammenfassend bietet diese Arbeit bedeutende neue Erkenntnisse hinsichtlich des Meiose-spezifischen Telomer-Adapterkomplex, seines Mechanismus zur Verankerung der Telomer an die Kernh{\"u}lle und die Entschl{\"u}sselung seines Ursprungs in den Metazoen.}, language = {en} } @phdthesis{Fritze2021, author = {Fritze, Lars}, title = {Ways to Novel Inorganic-Organic Hybrid Materials Applying New B-C Bond Formation Strategies}, doi = {10.25972/OPUS-24217}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-242173}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {π-Conjugated oligomers and polymers with tricoordinate boron centers incorporated into the main chain have attracted considerable attention as the interaction of the vacant p orbital on boron with an adjacent π system of the chain leads to conjugated materials with intriguing optical and electronic properties. This enables applicability in organic electronics and optoelectronics (OLEDs, OFETs, photovoltaics) or as sensory materials. The potential of our B-C coupling protocol using metal-free catalytic Si/B exchange condensation is demonstrated by the synthesis of a series of π-conjugated monodisperse (het)aryl oligoboranes. Variation of the (het)aryl moieties allowed for tunability of the optoelectronic properties of the materials. Additionally, catalytic C-C cross-coupling strategies were applied to synthesize oligofuryl-based mono- and bisboranes, as well as polymers. These studies led to very robust and highly emissive compounds (f up to 97 \%), which allow for tuning of their emission color from blue to orange. Furthermore, this work includes investigations of reaction routes to a kinetically stabilized tetraoxaporphyrinogen. Being a key aspect of this work, a full investigation of the mechanism of the catalytic Si/B exchange was carried out. Additionally, this work presents the use of borenium cations to perform B-C coupling via intermolecular electrophilic borylation. Similar to the Si/B exchange, this route is capable of giving access to diaryl(bromo)boranes.}, subject = {Konjugierte Polymere}, language = {en} } @phdthesis{Raharja2021, author = {Raharja, Andreas Budi}, title = {Optimisation Problems with Sparsity Terms: Theory and Algorithms}, doi = {10.25972/OPUS-24195}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-241955}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {The present thesis deals with optimisation problems with sparsity terms, either in the constraints which lead to cardinality-constrained problems or in the objective function which in turn lead to sparse optimisation problems. One of the primary aims of this work is to extend the so-called sequential optimality conditions to these two classes of problems. In recent years sequential optimality conditions have become increasingly popular in the realm of standard nonlinear programming. In contrast to the more well-known Karush-Kuhn-Tucker condition, they are genuine optimality conditions in the sense that every local minimiser satisfies these conditions without any further assumption. Lately they have also been extended to mathematical programmes with complementarity constraints. At around the same time it was also shown that optimisation problems with sparsity terms can be reformulated into problems which possess similar structures to mathematical programmes with complementarity constraints. These recent developments have become the impetus of the present work. But rather than working with the aforementioned reformulations which involve an artifical variable we shall first directly look at the problems themselves and derive sequential optimality conditions which are independent of any artificial variable. Afterwards we shall derive the weakest constraint qualifications associated with these conditions which relate them to the Karush-Kuhn-Tucker-type conditions. Another equally important aim of this work is to then consider the practicability of the derived sequential optimality conditions. The previously mentioned reformulations open up the possibilities to adapt methods which have been proven successful to handle mathematical programmes with complementarity constraints. We will show that the safeguarded augmented Lagrangian method and some regularisation methods may generate a point satisfying the derived conditions.}, subject = {Optimierungsproblem}, language = {en} } @phdthesis{Rauschenberger2021, author = {Rauschenberger, Vera}, title = {Stiff-person syndrome - Pathophysiological mechanisms of glycine receptor autoantibodies}, doi = {10.25972/OPUS-20958}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-209588}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {The Stiff-person syndrome (SPS) is a rare autoimmune disease that is characterized by symptoms including stiffness in axial and limb muscles as well as painful spasms. Different variants of SPS are known ranging from moderate forms like the stiff-limb syndrome to the most severe form progressive encephalomyelitis with rigidity and myoclonus (PERM). SPS is elicited by autoantibodies that target different pre- or postsynaptic proteins. The focus of the present work is on autoantibodies against the glycine receptor (GlyR). At start of the present thesis, as main characteristic of the GlyR autoantibody pathology, receptor cross-linking followed by enhanced receptor internalization and degradation via the lysosomal pathway was described. If binding of autoantibodies modulates GlyR function and therefore contributes to the GlyR autoantibody pathology has not yet been investigated. Moreover, not all patients respond well to plasmapheresis or other treatments used in the clinic. Relapses with even higher autoantibody titers regularly occur. In the present work, further insights into the disease pathology of GlyRα autoantibodies were achieved. We identified a common GlyRα1 autoantibody epitope located in the far N-terminus including amino acids A1-G34 which at least represent a part of the autoantibody epitope. This part of the receptor is easily accessible for autoantibodies due to its location at the outermost surface of the GlyRα1 extracellular domain. It was further investigated if the glycosylation status of the GlyR interferes with autoantibody binding. Using a GlyRα1 de-glycosylation mutant exhibited that patient autoantibodies are able to detect the de-glycosylated GlyRα1 variant as well. The direct modulation of the GlyR analyzed by electrophysiological recordings demonstrated functional alterations of the GlyR upon autoantibody binding. Whole cell patch clamp recordings revealed that autoantibodies decreased the glycine potency, shown by increased EC50 values. Furthermore, an influence on the desensitization behavior of the receptor was shown. The GlyR autoantibodies, however, had no impact on the binding affinity of glycine. These issues can be explained by the localization of the GlyR autoantibody epitope. The determined epitope has been exhibited to influence GlyR desensitization upon binding of allosteric modulators and differs from the orthosteric binding site for glycine, which is localized much deeper in the structure at the interface between two adjacent subunits. To neutralize GlyR autoantibodies, two different methods have been carried out. Transfected HEK293 cells expressing GlyRα1 and ELISA plates coated with the GlyRα1 extracellular domain were used to efficiently neutralize the autoantibodies. Finally, the successful passive transfer of GlyRα1 autoantibodies into zebrafish larvae and mice was shown. The autoantibodies detected their target in spinal cord and brain regions rich in GlyRs of zebrafish and mice. A passive transfer of human GlyRα autoantibodies to zebrafish larvae generated an impaired escape behavior in the animals compatible with the abnormal startle response in SPS or PERM patients.}, subject = {Glycinrezeptor}, language = {en} } @phdthesis{Mortimer2021, author = {Mortimer, Niall Patrick}, title = {ADHD Genetics in Mouse and Man}, doi = {10.25972/OPUS-23626}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-236265}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {Attention-deficit/hyperactivity disorder (ADHD) is a neurodevelopmental disorder with an estimated heritability of around 70\%. In order to fully understand ADHD biology it is necessary to incorporate multiple different types of research. In this thesis, both human and animal model research is described as both lines of research are required to elucidate the aetiology of ADHD and development new treatments. The role of a single gene, Adhesion G protein-coupled receptor L3 (ADGRL3) was investigated using a knockout mouse model. ADGRL3 has putative roles in neuronal migration and synapse function. Various polymorphisms in ADGRL3 have been linked with an increased risk of attention deficit/hyperactivity disorder (ADHD) in human studies. Adgrl3-deficient mice were examined across multiple behavioural domains related to ADHD: locomotive activity, visuospatial and recognition memory, gait impulsivity, aggression, sociability and anxiety-like behaviour. The transcriptomic alterations caused by Adgrl3-depletion were analysed by RNA-sequencing of three ADHD-relevant brain regions: prefrontal cortex (PFC), hippocampus and striatum. Increased locomotive activity in Adgrl3-/- mice was observed across all tests with the specific gait analysis revealing subtle gait abnormalities. Spatial memory and learning domains were also impaired in these mice. Increased levels of impulsivity and sociability accompanying decreased aggression were also detected. None of these alterations were observed in Adgrl3+/- mice. The numbers of genes found to exhibit differential expression was relatively small in all brain regions sequenced. The absence of large scale gene expression dysregulation indicates a specific pathway of action, rather than a broad neurobiological perturbation. The PFC had the greatest number of differentially expressed genes and gene-set analysis of differential expression in this brain region detected a number of ADHD-relevant pathways including dopaminergic synapses as well as cocaine and amphetamine addiction. The most dysregulated gene in the PFC was Slc6a3 which codes for the dopamine transporter, a molecule vital to current pharmacological treatment of ADHD. The behavioural and transcriptomic results described in this thesis further validate Adgrl3 constitutive knockout mice as an experimental model of ADHD and provide neuroanatomical targets for future studies involving ADGRL3 modified animal models. The study of ADHD risk genes such as ADGRL3 requires the gene to be first identified using human studies. These studies may be genome based such as genome wide association studies (GWAS) or transcriptome based using microarray or RNA sequencing technology. To explore ADHD biology in humans the research described in this thesis includes both GWAS and trancriptomic data. A two-step transcriptome profiling was performed in peripheral blood mononuclear cells (PBMCs) of 143 ADHD subjects and 169 healthy controls. We combined GWAS and expression data in an expression-based Polygenic Risk Score (PRS) analysis in a total sample of 879 ADHD cases and 1919 controls from three different datasets. Through this exploratory study we found eight differentially expressed genes in ADHD and no support for the genetic background of the disorder playing a role in the aberrant expression levels identified. These results highlight promising candidate genes and gene pathways for ADHD and support the use of peripheral tissues to assess gene expression signatures for ADHD. This thesis illustrates how both human and animal model research is required to increase our understanding of ADHD. The animal models provide biological insight into the targets identified in human studies and may themselves provide further relevant gene targets. Only by combining research from disparate sources can we develop the thorough understanding on ADHD biology required for treatment development, which is the ultimate goal of translational science research.}, language = {en} } @phdthesis{Michail2021, author = {Michail, Evripidis}, title = {Design and Development of a Two-Photon Absorption Induced Fluorescence Spectrometer and the Investigation of Nonlinear Optical Properties of Organic Chromophores}, doi = {10.25972/OPUS-24218}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-242185}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {Main objectives of the present dissertation can be divided in two parts. The first part deals with setting up a spectroscopic technique for reliable and accurate measurements of the two-photon absorption (2PA) cross section spectra. In the second part, this firmly established experimental technique together with conventional spectroscopic characterization, quantum-chemical computations and theoretical modelling calculations was combined and therefore used as a tool to gain information for the so-called structure-property relationship through several molecular compounds.}, subject = {Nonlinear Optical Properties of Organic Materials}, language = {en} } @phdthesis{Schleier2021, author = {Schleier, Domenik}, title = {Using Photoionization to Investigate Reactive Boron Species and the Kinetics of Hydrocarbon Radicals}, doi = {10.25972/OPUS-24213}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-242137}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {This thesis highlights the importance of isomer-selective approaches for the complete analysis of chemical processes. The method of choice is photoelectron/photoion coincidence spectroscopy, which allows simultaneous detection of electrons and ions coming from a single ionization event. Ionization techniques are sensitive and can record multiple species simultaneously, rendering them ideal tools to probe molecular transformations. Coupling these setups to synchrotron radiation allows one to analyze complex mixtures with isomer selectivity, based on ionization energies and vibrational structure in the cation, without any prior separation steps. Only few setups exist that can be used to gather these data, although their impact and applicability is growing steadily in various fields. For closed-shell species an easier and more widely used method is gas-chromatography, but most open shell species would not survive the separation process. Due to the reactivity of radicals they have to be created by selectively converting stable precursor molecules. Depending on the radical generation method different properties can be investigated ranging from thermodynamic data, over concentrations in high temperature environments, to chemical kinetics. The first part of this thesis deals with the determination of bimolecular rate constants. Isomeric hydrocarbon radicals were generated by a high intense UV light pulses and their kinetics with oxygen was measured. The pressure dependence of different isomers in the falloff region was compared to theoretical models, and their reactivity could be explained. The second part deals with boron containing compounds in various electronic situations. The corresponding precursors were successfully synthesized or could be bought. They were subjected to fluorine atoms in chemical reactors or destroyed pyrolytically at high temperatures. Most investigated species exhibited vibronic effects that could be elucidated using high level computations.}, subject = {Biradikal}, language = {en} } @phdthesis{Santos2021, author = {Santos, Sara F. C.}, title = {Expanding the targetome of Salmonella small RNA PinT using MS2 affinity purification and RNA-Seq (MAPS)}, doi = {10.25972/OPUS-20492}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-204926}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {Bacterial small RNAs are key mediators of post-transcriptional gene regulation. An increasing number of sRNAs have been implicated in the regulation of virulence programs of pathogenic bacteria. Recently, in the enteric pathogen Salmonella Typhimurium, the PinT sRNA has gained increased importance as it is the most upregulated sRNA as Salmonella infects mammalian host cells (Westermann et al., 2016). PinT acts as a temporal regulator of Salmonella's two major pathogenicity islands, SPI-1 and SPI-2 (Kim et al., 2019; Westermann et al., 2016). However, the complete set of PinT targets, its role in Salmonella infection and host response is not yet fully understood. Building on the MS2 affinity purification and RNA- seq (MAPS) method (Lalaouna et al., 2015), we here set out to globally identify direct RNA ligands of PinT, relevant to Salmonella infection. We transferred the classical MAPS technique, based on sRNA-bait overexpression, to more physiological conditions, using endogenous levels of the sRNA. Making the henceforth identified targets, less likely to represent artefacts of the overexpression. More importantly, we progressed the MAPS technique to in vivo settings and by doing so, we were able pull-down bacterial RNA transcripts bound by PinT during macrophage infection. While we validate previously known PinT targets, our integrated data revealed novel virulence relevant target. These included mRNAs for the SPI-2 effector SteC, the PhoQ activator UgtL and the 30S ribosomal protein S22 RpsV. Next, we follow up on SteC, the best characterized virulence relevant PinT target. Using genetic and biochemical assays, we demonstrate that PinT represses steC mRNA by direct base-pairing and translational interference. PinT-mediated regulation of SteC leads to alterations in the host response to Salmonella infection. This regulation impacts the cytokine response of infected macrophages, by altering IL10 production, and possibly driving the macrophages to an anti-inflammatory state, more permise to infection. SteC is responsible for F-actin meshwork rearrangements around the SCV (Poh et al., 2008). Here we demonstrate that PinT-mediated regulation of SteC, impacts the formation of this actin meshwork in infected cells. Our results demonstrate that SteC expression is very tightly regulated by PinT in two layers; indirectly, by repressing ssrB and crp; and directly by binding to steC 5'UTR. PinT contributes to post-transcriptional cross-talk between invasion and intracellular replication programs of Salmonella, by controlling the expression of both SPI-1 and SPI-2 genes (directly and indirectly). Together, our collective data makes PinT the first sRNA in Gram-negatives with a pervasive role in virulence, at the center of Salmonella virulence programs and provide molecular input that could help explain the attenuation of pinT-deficient Salmonella strains in whole animal models of infection.}, language = {en} } @phdthesis{MezaChincha2021, author = {Meza Chincha, Ana Lucia}, title = {Catalytic Water Oxidation with Functionalized Ruthenium Macrocycles}, doi = {10.25972/OPUS-20962}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-209620}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {In light of the rapidly increasing global demand of energy and the negative effects of climate change, innovative solutions that allow an efficient transition to a carbon-neutral economy are urgently needed. In this context, artificial photosynthesis is emerging as a promising technology to enable the storage of the fluctuating energy of sunlight in chemical bonds of transportable "solar fuels". Thus, in recent years much efforts have been devoted to the development of robust water oxidation catalysts (WOCs) leading to the discovery of the highly reactive Ru(bda) (bda: 2,2'-bipyridine-6,6'-dicarboxylic acid) catalyst family. The aim of this thesis was the study of chemical and photocatalytic water oxidation with functionalized Ruthenium macrocycles to explore the impact of substituents on molecular properties and catalytic activities of trinuclear macrocyclic Ru(bda) catalysts. A further objective of this thesis comprises the elucidation of factors that influence the light-driven water oxidation process with this novel class of supramolecular WOCs.}, subject = {Rutheniumkomplexe}, language = {en} } @phdthesis{Kerner2021, author = {Kerner, Florian Tobias}, title = {Reactions of rhodium(I) with diynes and studies of the photophysical behavior of the luminescent products}, doi = {10.25972/OPUS-20910}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-209107}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {Chapter 1 deals with the reaction of [Rh(acac)(PMe3)2] with para-substituted 1,4-diphenylbuta-1,3-diynes at room temperature, in which a complex containing a bidentate organic fulvene moiety, composed of two diynes, σ-bound to the rhodium center is formed in an all-carbon [3+2] type cyclization reaction. In addition, a complex containing an organic indene moiety, composed of three diynes, attached to the rhodium center in a bis-σ-manner is formed in a [3+2+3] cyclization process. Reactions at 100 °C reveal that the third diyne inserts between the rhodium center and the bis-σ-bound organic fulvene moiety. Furthermore, the formation of a 2,5- and a 2,4-bis(arylethynyl)rhodacyclopentadiene is observed. The unique [3+2] cyclization product was used for the synthesis of a highly conjugated organic molecule, which is hard to access or even inaccessible by conventional methods. Thus, at elevated temperatures, reaction of the [3+2] product with para-tolyl isocyanate led to the formation of a purple organic compound containing the organic fulvene structure and one equivalent of para-tolyl isocyanate. The blue and green [3+2+3] complexes show an unusually broad absorption from 500 - 1000 nm with extinction coefficients ε of up to 11000 M-1 cm-1. The purple organic molecule shows an absorption spectrum similar to those of known diketopyrrolopyrroles. Additionally, the reaction of [Rh(acac)(PMe3)2] with para-tolyl isocyanate was investigated. A cis-phosphine complex of the form cis-[Rh(acac)(PMe3)2(isocyanate)2] with an isocyanate dimer bound to the rhodium center by one carbon and one oxygen atom was isolated. Replacing the trimethylphosphine ligands in [Rh(acac)(PMe3)2] with the stronger σ-donating NHC ligand Me2Im (1,3-dimethylimidazolin-2-ylidene), again, drastically alters the reaction. Similar [3+2] and [3+2+3] products to those discussed above could not be unambiguously assigned, but cis- and trans-π-complexes, which are in an equilibrium with the two starting materials, were formed. Chapters 2 is about the influence of the backbone of the α,ω-diynes on the formation and photophysical properties of 2,5-bis(aryl)rhodacyclopentadienes. Therefore, different α,ω-diynes were reacted with [Rh(acac)(PMe3)2] and [Rh(acac)(P(p-tolyl)3)2] in equimolar amounts. In general, a faster consumption of the rhodium(I) starting material is observed while using preorganized α,ω-diynes with electron withdrawing substituents in the backbone. The isolated PMe3-substituted rhodacyclopentadienes exhibit fluorescence, despite the presence of the heavy atom rhodium, with lifetimes τF of < 1 ns and photoluminescence quantum yields Φ of < 0.01 as in previously reported P(p-tolyl)-substituted 2,5-bis(arylethynyl)rhodacyclopentadienes. However, an isolated P(p-tolyl)-substituted 2,5-bis(aryl)rhodacyclopentadiene shows multiple lifetimes and different absorption and excitation spectra leading to the conclusion that different species may be present. Reaction of [Rh(acac)(Me2Im)2] with dimethyl 4,4'-(naphthalene-1,8-diylbis(ethyne-2,1-diyl))dibenzoate, results in the formation of a mixture trans- and cis-NHC-substituted 2,5-bis(aryl)rhodacyclopentadienes. In chapter 3 the reaction of various acac- and diethyldithiocarbamate-substituted rhodium(I) catalysts bearing (chelating)phosphines with α,ω-bis(arylethynyl)alkanes (α,ω-diynes), yielding luminescent dimers and trimers, is described. The photophysical properties of dimers and trimers of the α,ω-diynes were investigated and compared to para-terphenyl, showing a lower quantum yield and a larger apparent Stokes shift. Furthermore, a bimetallic rhodium(I) complex of the form [Rh2(ox)(P(p-tolyl)3)4] (ox: oxalate) was reacted with a CO2Me-substituted α,ω-tetrayne forming a complex in which only one rhodium(I) center reacts with the α,ω-tetrayne. The photophysical properties of this mixed rhodium(I)/(III) species shows only negligible differences compared to the P(p-tolyl)- and CO2Me-substituted 2,5-bis(arylethynyl)rhodacyclopentadiene, previously synthesized by Marder and co-workers.}, subject = {{\"U}bergangsmetallkomplexe}, language = {en} } @phdthesis{Kodandaraman2021, author = {Kodandaraman, Geema}, title = {Influence of insulin-induced oxidative stress in genotoxicity and disease}, doi = {10.25972/OPUS-24200}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-242005}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {Hormones are essential components in the body and their imbalance leads to pathological consequences. T2DM, insulin resistance and obesity are the most commonly occurring lifestyle diseases in the past decade. Also, an increased cancer incidence has been strongly associated with obese and T2DM patients. Therefore, our aim was to study the influence of high insulin levels in accumulating DNA damage in in vitro models and patients, through the induction of oxidative stress. The primary goal of this study was to analyze the genotoxicity induced by the combined action of two endogenous hormones (insulin and adrenaline) with in vitro models, through the induction of micronuclei and to see if they cause an additive increase in genomic damage. This is important for multifactorial diseases having high levels of more than one hormone, such as metabolic syndrome and conditions with multiple pathologies (e.g., T2DM along with high stress levels). Furthermore, the combination of insulin and the pharmacological inhibition of the tumor suppressor gene: PTEN, was to be tested in in vitro models for their genotoxic effect and oxidative stress inducing potential. As the tumor suppressor gene: PTEN is downregulated in PTEN associated syndromes and when presented along with T2DM and insulin resistance, this may increase the potential to accumulate genomic damage. The consequences of insulin action were to be further elucidated by following GFP-expressing cells in live cell-imaging to observe the ability of insulin, to induce micronuclei and replicative stress. Finally, the detrimental potential of high insulin levels in obese patients with hyperinsulinemia and pre-diabetes was to be studied by analyzing markers of oxidative stress and genomic damage. In summary, the intention of this work was to understand the effects of high insulin levels in in vitro and in patients to understand its relevance for the development of genomic instability and thus an elevated cancer risk.}, subject = {Insulin}, language = {en} } @phdthesis{CruzGarcia2021, author = {Cruz Garcia, Yiliam}, title = {Interactome of the β2b subunit of L-type voltage-gated calcium channels in cardiomyocytes}, doi = {10.25972/OPUS-20857}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-208579}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {L-type voltage-gated calcium channels (LTCC) are heteromultimeric membrane proteins that allow Ca2+ entry into the cell upon plasma membrane depolarization. The β subunit of voltage-dependent calcium channels (Cavβ) binds to the α-interaction domain in the pore-forming α1 subunit and regulates the trafficking and biophysical properties of these channels. Of the four Cavβ isoforms, Cavβ2 is predominantly expressed in cardiomyocytes. This subunit associates with diverse proteins besides LTCC, but the molecular composition of the Cavβ2 nanoenvironments in cardiomyocytes is yet unresolved. Here, we used a protein-labeling technique in living cells based on an engineered ascorbate peroxidase 2 (APEX2). In this strategy, Cavβ2b was fused to APEX2 and expressed in adult rat cardiomyocytes using an adenovirus system. Nearby proteins covalently labeled with biotin-phenol were purified using streptavidin-coated beads and identified by mass spectrometry (MS). Analysis of the in situ APEX2-based biotin labeling by MS revealed 61 proteins located in the nanoenvironments of Cavβ2b, with a high specificity and consistency in all the replicates. These proteins are involved in diverse cellular functions such as cellular trafficking, sarcomere organization and excitation-contraction coupling. Among these proteins, we demonstrated an interaction between the ryanodine receptor 2 (RyR2) and Cavβ2b, probably coupling LTCC and the RyR2 into a supramolecular complex at the dyads. This interaction is mediated by the Src homology 3 (SH3) domain of Cavβ2b and is necessary for an effective pacing frequency-dependent increase in Ca2+-induced Ca2+ release in cardiomyocytes.}, subject = {Calciumkanal}, language = {en} } @article{VogelBusslerFinnbergetal.2021, author = {Vogel, Sebastian and Bussler, Heinz and Finnberg, Sven and M{\"u}ller, J{\"o}rg and Stengel, Elisa and Thorn, Simon}, title = {Diversity and conservation of saproxylic beetles in 42 European tree species: an experimental approach using early successional stages of branches}, series = {Insect Conservation and Diversity}, volume = {14}, journal = {Insect Conservation and Diversity}, number = {1}, doi = {10.1111/icad.12442}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-218401}, pages = {132 -- 143}, year = {2021}, abstract = {Tree species diversity is important to maintain saproxylic beetle diversity in managed forests. Yet, knowledge about the conservational importance of single tree species and implications for forest management and conservation practices are lacking. We exposed freshly cut branch-bundles of 42 tree species, representing tree species native and non-native to Europe, under sun-exposed and shaded conditions for 1 year. Afterwards, communities of saproxylic beetles were reared ex situ for 2 years. We tested for the impact of tree species and sun exposure on alpha-, beta-, and gamma-diversity as well as composition of saproxylic beetle communities. Furthermore, the number of colonised tree species by each saproxylic beetle species was determined. Tree species had a lower impact on saproxylic beetle communities compared to sun exposure. The diversity of saproxylic beetles varied strongly among tree species, with highest alpha- and gamma-diversity found in Quercus petraea. Red-listed saproxylic beetle species occurred ubiquitously among tree species. We found distinct differences in the community composition of broadleaved and coniferous tree species, native and non-native tree species as well as sun-exposed and shaded deadwood. Our study enhances the understanding of the importance of previously understudied and non-native tree species for the diversity of saproxylic beetles. To improve conservation practices for saproxylic beetles and especially red-listed species, we suggest a stronger incorporation of tree species diversity and sun exposure of into forest management strategies, including the enrichment of deadwood from native and with a specific focus on locally rare or silviculturally less important tree species.}, language = {en} } @article{ScheinerSinkSpatzetal.2021, author = {Scheiner, Matthias and Sink, Alexandra and Spatz, Philipp and Endres, Erik and Decker, Michael}, title = {Photopharmacology on Acetylcholinesterase: Novel Photoswitchable Inhibitors with Improved Pharmacological Profiles}, series = {ChemPhotoChem}, volume = {5}, journal = {ChemPhotoChem}, number = {2}, doi = {10.1002/cptc.202000119}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-218445}, pages = {149 -- 159}, year = {2021}, abstract = {Considerable effort has previously been invested in a light-controlled inhibition of the enzyme acetylcholinesterase (AChE). We found that a novel azobenzene-based bistacrine AChE inhibitor switched faster than the known dithienylethene based bistacrine and inverted the photo-controlled interactions of the photoisomers compared to its dithienylethene congener. Furthermore, we have optimized a previously described light-controlled tacrine-based AChE inhibitor. Isomerization upon irradiation with UV light of the novel inhibitor was observed in aqueous medium and showed no fatigue over several cycles. The cis-enriched form showed an 8.4-fold higher inhibition of hAChE compared with its trans-enriched form and was about 30-fold more active than the reference compound tacrine with a single-digit nanomolar inhibition. We went beyond proof-of-concept to discover photoswitchable AChE inhibitors with pharmacologically desirable nanomolar inhibition, "cis-on" effect, and pronounces differences between the photoisomers.}, language = {en} } @phdthesis{Seufert2021, author = {Seufert, Pascal}, title = {Chemical and physical structure of the barrier against water transpiration of leaves: Contribution of different wax compounds}, doi = {10.25972/OPUS-20896}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-208963}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {The cuticle is constituted of the biopolymer cutin and intra- and epicuticular waxes. In some cases, it has epicuticular wax crystals, protruding from the epicuticular wax film. One of the most important tasks is protection against desiccation. Many investigations were conducted to find the transport limiting component of the cuticle. It is evidentially confirmed that the waxes form this barrier. These waxes are multifactorial blends made of very-long-chain aliphatic (VLCA) compounds and triterpenoids (TRP). The VLCAs were proposed to constitute the transpiration barrier to water. However, experimental confirmation was lacking so far. The present study focuses on the development of a method to selectively extract TRPs from the cuticle and the impact of the removal on the transpiration barrier. The plants deployed in this study exhibited several features. They had no epicuticular crystals on their surfaces, were astomatous, had a rather durable and possibly isolatable cuticle. A broad range of wax compositions was covered from plants with no TRP content and low wax load like Hedera helix and Zamioculcas zamiifolia to plants with high TRP content and high wax load like Nerium oleander. The selective extraction was conducted using a sequence of solvents. TRPs were extracted almost exhaustively from CMs with the first MeOH extract. Only a minor amount of shorter chained VLCAs was obtained. The remaining waxes, consisting mostly of VLCAs and some remnant TRPs, were removed with the following TCM extract. After the extractions, the water permeance of native cuticular membranes (CM), MeOH extracted (M) and dewaxed cuticular discs (MX) was investigated gravimetrically. Compared to the water permeance of CMs, Ms showed no or only a small increase in water conductance. MXs, however, always showed strongly increased values. The knowledge about the wax compounds constituting the transport-limiting properties is vital for different projects. For various issues, it would be favourable to have a standardized wax mixture as an initial point of research. It could be used to develop screening procedures to investigate the impact of adjuvants on cuticular waxes or the influence of wax constituents on the properties of cuticular waxes. This work concentrated on the development of an artificial wax mixture, which mimics the physical properties of a plant leaf wax sufficiently. As target wax, the leaf wax of Schefflera elegantissima was chosen. The wax of this plant species consisted almost exclusively of VLCAs, had a rather simple composition regarding compound classes and chain length distribution and CMs could be isolated. Artificial binary, ternary and quaternary waxes corresponding to the conditions within the plant wax were investigated using differential scanning calorimetry (DSC), X-ray diffraction (XRD) techniques and Fourier-transform infrared (FTIR) spectroscopy. Phase diagrams were mapped out for a series of binary, ternary and quaternary wax mixtures. FTIR experiments were conducted using, ternary and a quaternary artificial wax blends. The blends were chosen to represent the conditions within the wax of the adaxial CM plant wax. The FTIR experiments exhibited an increasing resemblance of the artificial wax to the plant wax (adaxial CM wax) with an increasing number of compounds in the artificial wax. The same trend was found for DSC thermograms. Thermograms of ternary and quaternary blends exhibited more overlapping peaks and occurred in a temperature range more similar to the range of the whole leaf plant wax. The XRD spectrum at room temperature showed good conformity with the quaternary blend. The current work illustrates a method for selective extraction of TRPs from isolated CMs. It gives direct experimental proof of the association of the water permeance barrier with the VLCA rather than to the TRPs. Furthermore, the possibility to mimic cuticular waxes using commercially available wax compounds is investigated. The results show promising feasibility for its viability, enabling it to perform as a standardized initial point for further research (e.g. to examine the influence of different constituents on waxes), revealing valuable knowledge about the structure and the chemistry-function relationship of cuticular waxes.}, subject = {Kutikula}, language = {en} } @phdthesis{Koeniger2021, author = {K{\"o}niger, Tobias}, title = {The Vessel Wall and Beyond: Characterization of Myeloid Progenitors in the Adult Mouse Brain}, doi = {10.25972/OPUS-18646}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-186465}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {After almost two decades of extensive research, some controversy has remained regarding the self-renewal of resident macrophages of the central nervous system (CNS). Concurrently, the vessel wall has emerged as a potentially ubiquitous niche for stem and progenitor cells, including committed macrophage precursors. It is conceivable that their occurrence in the CNS might explain the brain-resident hematopoietic potential, which has repeatedly been observed but not yet characterized in detail. In this work, the presence of hematopoietic progenitors inside and outside the vessel wall was studied in the adult mouse brain, as well as their possible contribution to the resident macrophage pool. An immunohistological analysis did not corroborate CD45+ SCA-1+ macrophage progenitors, which have been characterized in peripheral arteries, in the circle of Willis. Accordingly, the ex vivo culture of CNS vessels did not provide evidence for de novo formation of macrophages, but for the extensive proliferative capacity of mature cells. However, when analyzing whole brain suspensions in colony-forming unit (CFU) assays, rare Iba1- Cx3cr1- (immature) clonogenic cells were detected, which were enriched at the cerebral surface/meninges and differentiated into macrophages in culture. Intravenous antibody injection and cell sorting confirmed their residence behind the blood-brain barrier. Intriguingly, brain-derived CFUs produced a unique pattern of colony types compared to cells from bone marrow (BM) or blood. Still they displayed the same immunophenotype as BM-resident myeloid progenitors (CD45lo, LIN-, SCA-1-, IL7Rα-, c-KIT+) and could be further stratified into a progenitor hierarchy giving rise to all erythro-myeloid cell types in vitro. This similarity was substantiated by labeling of their progeny in Flt3Cre x Rosa26mT/mG mice, which indicated a descendance from hematopoietic stem cells. While forced repopulation of brain macrophages using the CSF-1R inhibitor PLX5622 did not point to a role of progenitors in in vivo microglia/macrophage maintenance, recent advances in hematology imply that they might be involved in CNS immunosurveillance. In conclusion, though there was no evidence for adventitial macrophage precursors in the CNS, this study confirms the presence of myeloid progenitors in the adult brain and provides the anatomical and phenotypical details necessary to elucidate their relevance in neuroinflammation.}, subject = {Gehirn}, language = {en} } @misc{Gamaleldin2021, type = {Master Thesis}, author = {Gamaleldin, Mariam}, title = {Non-canonical Signaling of μ-opioid Receptors}, doi = {10.25972/OPUS-24032}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-240327}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {According to the "canonical" paradigm of GPCR signaling, agonist-bound GPCRs only signal to the downstream adenylyl cyclase enzyme when they are seated at the plasma membrane. Upon prolonged binding of an agonist, receptor internalization usually takes place, leading to the termination of this downstream signaling pathway and activation of alternative ones. However, a set of recent studies have shown that at least some GPCRs (e.g. thyroid stimulating hormone receptor) continue signaling to adenylyl cyclase after internalization. In this study, I aimed to investigate canonical signaling by internalized μ opioid receptors (MORs), which are Gi-coupled receptors, using a fluorescence resonance energy transfer (FRET) sensor for cyclic AMP (cAMP) known as Epac1-camps. My results show that the cyclic AMP inhibition signal induced by the binding of DAMGO, a MOR agonist, persists after agonist washout. We hypothesized that this persistent signal might come from internalized DAMGO-bound receptors located in the endosomal compartment. To test this hypothesis, I used dynasore and Dyngo 4a, two dynamin inhibitors that are known to prevent clathrin-mediated endocytosis. Interestingly, dynasore but not Dyngo 4a pretreatment largely blunted the response to MOR activation as well as to adenylyl cyclase activation with Forskolin (FSK). In addition, DAMGO-induced cAMP signal remained persistent even in the presence of 30 M Dyngo 4a. These results might point to a complex interplay between clathrin-mediated internalization and MOR signaling. Further experiments are required to elucidate the mechanisms underlying the persistent MOR signaling and to fully clarify whether MORs are capable of Gi signaling in the endosomal compartment.}, language = {en} } @phdthesis{Wenz2021, author = {Wenz, Andreas}, title = {Computation of Belyi maps with prescribed ramification and applications in Galois theory}, doi = {10.25972/OPUS-24083}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-240838}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {We compute genus-0 Belyi maps with prescribed monodromy and strictly verify the computed results. Among the computed examples are almost simple primitive groups that satisfy the rational rigidity criterion yielding polynomials with prescribed Galois groups over Q(t). We also give an explicit version of a theorem of Magaard, which lists all sporadic groups occurring as composition factors of monodromy groups of rational functions.}, subject = {Galois-Theorie}, language = {en} } @phdthesis{Mayer2021, author = {Mayer, Alexander E.}, title = {Protein kinase D3 signaling in the regulation of liver metabolism}, doi = {10.25972/OPUS-20797}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-207978}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {The liver plays a pivotal role in maintaining energy homeostasis. Hepatic carbohydrate and lipid metabolism are tightly regulated in order to adapt quickly to changes in nutrient availability. Postprandially, the liver lowers the blood glucose levels and stores nutrients in form of glycogen and triglycerides (TG). In contrast, upon fasting, the liver provides glucose, TG, and ketone bodies. However, obesity resulting from a discrepancy in food intake and energy expenditure leads to abnormal fat accumulation in the liver, which is associated with the development of hepatic insulin resistance, non-alcoholic fatty liver disease, and diabetes. In this context, hepatic insulin resistance is directly linked to the accumulation of diacylglycerol (DAG) in the liver. Besides being an intermediate product of TG synthesis, DAG serves as second messenger in response to G-protein coupled receptor signaling. Protein kinase D (PKD) family members are DAG effectors that integrate multiple metabolic inputs. However, the impact of PKD signaling on liver physiology has not been studied so far. In this thesis, PKD3 was identified as the predominantly expressed isoform in liver. Stimulation of primary hepatocytes with DAG as well as high-fat diet (HFD) feeding of mice led to an activation of PKD3, indicating its relevance during obesity. HFD-fed mice lacking PKD3 specifically in hepatocytes displayed significantly improved glucose tolerance and insulin sensitivity. However, at the same time, hepatic deletion of PKD3 in mice resulted in elevated liver weight as a consequence of increased hepatic lipid accumulation. Lack of PKD3 in hepatocytes promoted sterol regulatory element-binding protein (SREBP)-mediated de novo lipogenesis in vitro and in vivo, and thus increased hepatic triglyceride and cholesterol content. Furthermore, PKD3 suppressed the activation of SREBP by impairing the activity of the insulin effectors protein kinase B (AKT) and mechanistic target of rapamycin complexes (mTORC) 1 and 2. In contrast, liver-specific overexpression of constitutive active PKD3 promoted glucose intolerance and insulin resistance. Taken together, lack of PKD3 improves hepatic insulin sensitivity but promotes hepatic lipid accumulation. For this reason, manipulating PKD3 signaling might be a valid strategy to improve hepatic lipid content or insulin sensitivity. However, the exact molecular mechanism by which PKD3 regulates hepatocytes metabolism remains unclear. Unbiased proteomic approaches were performed in order to identify PKD3 phosphorylation targets. In this process, numerous potential targets of PKD3 were detected, which are implicated in different aspects of cellular metabolism. Among other hits, phenylalanine hydroxylase (PAH) was identified as a target of PKD3 in hepatocytes. PAH is the enzyme that is responsible for the conversion of phenylalanine to tyrosine. In fact, manipulation of PKD3 activity using genetic tools confirmed that PKD3 promotes PAH-dependent conversion of phenylalanine to tyrosine. Therefore, the data in this thesis suggests that PKD3 coordinates lipid and amino acid metabolism in the liver and contributes to the development of hepatic dysfunction.}, subject = {Metabolismus}, language = {en} } @article{WeineltKarathanasisSmithetal.2021, author = {Weinelt, Nadine and Karathanasis, Christos and Smith, Sonja and Medler, Juliane and Malkusch, Sebastian and Fulda, Simone and Wajant, Harald and Heilemann, Mike and van Wijk, Sjoerd J. L.}, title = {Quantitative single-molecule imaging of TNFR1 reveals zafirlukast as antagonist of TNFR1 clustering and TNFα-induced NF-ĸB signaling}, series = {Journal of Leukocyte Biology}, volume = {109}, journal = {Journal of Leukocyte Biology}, number = {2}, doi = {10.1002/JLB.2AB0420-572RR}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-215960}, pages = {363 -- 371}, year = {2021}, abstract = {TNFR1 is a crucial regulator of NF-ĸB-mediated proinflammatory cell survival responses and programmed cell death (PCD). Deregulation of TNFα- and TNFR1-controlled NF-ĸB signaling underlies major diseases, like cancer, inflammation, and autoimmune diseases. Therefore, although being routinely used, antagonists of TNFα might also affect TNFR2-mediated processes, so that alternative approaches to directly antagonize TNFR1 are beneficial. Here, we apply quantitative single-molecule localization microscopy (SMLM) of TNFR1 in physiologic cellular settings to validate and characterize TNFR1 inhibitory substances, exemplified by the recently described TNFR1 antagonist zafirlukast. Treatment of TNFR1-mEos2 reconstituted TNFR1/2 knockout mouse embryonic fibroblasts (MEFs) with zafirlukast inhibited both ligand-independent preligand assembly domain (PLAD)-mediated TNFR1 dimerization as well as TNFα-induced TNFR1 oligomerization. In addition, zafirlukast-mediated inhibition of TNFR1 clustering was accompanied by deregulation of acute and prolonged NF-ĸB signaling in reconstituted TNFR1-mEos2 MEFs and human cervical carcinoma cells. These findings reveal the necessity of PLAD-mediated, ligand-independent TNFR1 dimerization for NF-ĸB activation, highlight the PLAD as central regulator of TNFα-induced TNFR1 oligomerization, and demonstrate that TNFR1-mEos2 MEFs can be used to investigate TNFR1-antagonizing compounds employing single-molecule quantification and functional NF-ĸB assays at physiologic conditions.}, language = {en} } @article{RuboGamer2021, author = {Rubo, Marius and Gamer, Matthias}, title = {Stronger reactivity to social gaze in virtual reality compared to a classical laboratory environment}, series = {British Journal of Psychology}, volume = {112}, journal = {British Journal of Psychology}, number = {1}, doi = {10.1111/bjop.12453}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-215972}, pages = {301 -- 314}, year = {2021}, abstract = {People show a robust tendency to gaze at other human beings when viewing images or videos, but were also found to relatively avoid gaze at others in several real-world situations. This discrepancy, along with theoretical considerations, spawned doubts about the appropriateness of classical laboratory-based experimental paradigms in social attention research. Several researchers instead suggested the use of immersive virtual scenarios in eliciting and measuring naturalistic attentional patterns, but the field, struggling with methodological challenges, still needs to establish the advantages of this approach. Here, we show using eye-tracking in a complex social scenario displayed in virtual reality that participants show enhanced attention towards the face of an avatar at near distance and demonstrate an increased reactivity towards her social gaze as compared to participants who viewed the same scene on a computer monitor. The present study suggests that reactive virtual agents observed in immersive virtual reality can elicit natural modes of information processing and can help to conduct ecologically more valid experiments while maintaining high experimental control.}, language = {en} } @article{KouhestaniGeisAlsourietal.2021, author = {Kouhestani, Dina and Geis, Maria and Alsouri, Saed and Bumm, Thomas G. P. and Einsele, Hermann and Sauer, Markus and Stuhler, Gernot}, title = {Variant signaling topology at the cancer cell-T-cell interface induced by a two-component T-cell engager}, series = {Cellular \& Molecular Immunology}, volume = {18}, journal = {Cellular \& Molecular Immunology}, doi = {10.1038/s41423-020-0507-7}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-241189}, pages = {1568-1570}, year = {2021}, abstract = {No abstract available.}, language = {en} } @phdthesis{Dodt2021, author = {Dodt, Katharina Anna}, title = {Monitoring enzyme activity by using mass-encoded peptides and multiplexed detection}, doi = {10.25972/OPUS-22937}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-229377}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {Cell culture models are helpful tools to study inflammatory diseases, like rheumatoid arthritis (RA), osteoarthritis (OA), arteriosclerosis or asthma, which are linked to increased matrix metalloproteinase (MMP) activity. Such cell culture models often focus on the secretion of cytokines and growth factors or the direct effects of disease on tissue destruction. Even though the crucial role of MMPs in inflammatory diseases is known, the results of MMP studies are contradictious and the use of MMPs as biomarkers is inconsistent. MMPs play an important role in disease pathology, as they are involved in elastin degradation in the walls of alveoli in chronic obstructive pulmonary disease (COPD), tumor angiogenesis and metastasis and in cartilage and bone degradation in arthropathies. In RA and OA MMPs are secreted by osteocytes, synoviocytes, and by infiltrating immune cells in response to the increased concentration of inflammatory mediators, like growth factors and cytokines. MMPs are zinc and calcium-dependent proteinases and play an important role in physiological and pathological extracellular matrix (ECM) turn over. Their substrate specificity gives them the ability to degrade all major ECM components, like aggrecan, elastin, gelatin, fibronectin and all types of collagen even the triple helix of collagen monomers. The ECM consists of two large three-dimensional cross-linked macromolecule classes: one are fibrous proteins, like collagen and elastin fibers that are responsible for ECM's structure, tensile strength, resiliency, reversible extensibility, and deformability and the second class is comprised of proteoglycans composed of glycosaminoglycan (GAG) chains covalently attached to protein cores that are multifunctionally involved in signaling pathways and cell interactions. ECM is present within all tissues and organs and changes in ECM structure contribute to pathogenesis, e.g. wounded and fibrotic tissue, COPD or tumours. This thesis primarily focuses on the development of a diagnostic peptide system, that enables to gain information on MMP activity from ECM by deploying the isobaric mass encoding strategy. The core element of the developed system is an isotopically labelled peptide sequence (mass tag), that is released in response to elevated levels of MMPs and allows multiplexed detection in tandem mass spectrometry (LC-MS/MS). The mass reporters possess a modular structure with different functionalities. C-terminal either a transglutaminase (TG) recognition sequence or a high molecular weight polyethylene glycol (PEG) moiety was attached to immobilize the mass reporters covalently or physically at the injection site. The following matrix metalloproteinase substrate sequence (MSS) is incorporated in two different versions with different sensitivity to MMPs. The MSS were applied in pairs for relative quantification consisting of the cleavable version synthesized with natural L-amino acids and the non-cleavable D-amino acid variant. The mass tag was synthesized with isotopically labelled amino acids and is separated from the MSS by a UV light-sensitive molecule. N-terminal the mass tag is followed by a tobacco etch virus protease (TEV) sensitive sequence, that is responsible to separate the mass tag from the affinity tag, which was either the Strep-tag II sequence or biotin and were added for purification purposes. Chapter 1 presents a step-by-step protocol on how to design a mass tag family allowing for multiplexed analysis by LC-MS/MS. The multiplexing is achieved by developing an isobar mass tag family with four family members, which are chromatographically indistinguishable, but due to the mass encoding principles they fragment in distinct y-type ions with a mass difference of 1 or 2 Da each in MS2. Furthermore, it is explained how to covalently attach the mass reporter peptides onto ECM by the activated calcium-catalyzed blood coagulation transglutaminase factor XIII (FXIIIa). The lysine of mass reporter's TG sequence (D-domain of insulin-like growth factor-I (IGF-I)) and a glutamine in fibronectin are covalently crosslinked by FXIIIa and build an isopeptide bond. Elevated levels of MMP release the mass reporters from ECM by recognizing the inter-positioned MSS. The designed mass reporters were able to monitor enzyme activity in an in vitro setting with cell-derived ECM, which was shown in Chapter 2. The modular structured mass reporters were investigated in a proof of concept study. First, the different modules were characterized in terms of their MMP responsiveness and their sensitivity to TEV protease and UV light. Then the FXIIIa-mediated coupling reaction was detailed and the successful coupling on ECM was visualized by an immunosorbent assay or confocal laser scanning microscopy. Finally, the immobilized mass reporters on ECM were incubated with MMP-9 to investigate their multiplexing ability of MMP activity. The cleaved mass reporter fragments were purified in three steps and mass tags were analyzed as mix of all four in LC-MS/MS. Chapter 3 describes the change from an immobilizing system as seen in chapter 1 and 2 to a soluble enzyme activity monitoring system that was applied in an osteoarthritic mouse model. Instead of the immobilizing TG sequence the C-terminal MMS was extended with two amino acids where one holds an azide moiety to perform a strain-promoted azide-alkyne cycloaddition to a high molecular weight dibenzocyclooctyne-polyethylene glycol (DBCO-PEG), which was chosen to retain the mass reporters at the injection site. Furthermore, the N-terminal affinity tag was extended with a 2.5 kDa PEG chain to increase the half-life of the mass reporter peptides after MMP release. The systems biocompatibility was proved but its enzyme monitoring ability in an in vivo setting could not be analyzed as samples degraded during shipping resulting from the Chinese customs blocking transport to Germany. In summary the diagnostic peptide system was developed in two variants. The immobilized version one from chapter 1 and 2 was designed to be covalently attached to ECM by the transglutaminase-mediated cross-linking reaction. In an in vitro setting the functionality of the mass reporter system for the detection of MMP activity was successfully verified. The second variant comprises of a soluble mass reporter system that was tested in an OA mouse model and showed biocompatibility. With these two designed systems this thesis provides a flexible platform based on multiplexed analysis with mass-encoded peptides to characterize cell culture models regarding their MMP activity, to deploy cell-derived ECM as endogenous depot scaffold and to develop a mass tag family that enables simultaneous detection of at least four mass tags.}, subject = {Extrazellul{\"a}re Matrix}, language = {en} } @article{AtiyasDoganogluInceoglu2021, author = {Atiyas, Izak and Doganoglu, Toker and Inceoglu, Firat}, title = {Upstream Competition with Complex and Unobservable Contracts}, series = {Review of Industrial Organization}, volume = {58}, journal = {Review of Industrial Organization}, doi = {10.1007/s11151-020-09766-y}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-241161}, pages = {399-429}, year = {2021}, abstract = {This paper examines situations where two vertically integrated firms consider supplying an input to an independent downstream competitor via privately observed contracts. We identify equilibria where competition in the upstream market emerges—the downstream competitor gets supplied—as well as when the downstream firm does not receive the input and is excluded from the market. The likelihood of the outcome in which the downstream firm does not get supplied depends not only on demand parameters, but also on contractual flexibility and observability. We show that when contracts are unobservable, downstream entry will occur less often. Furthermore, our results suggest that permitting contracts that enable the contracting parties to coordinate their behavior in the downstream market may improve welfare by increasing the likelihood that the downstream firm is supplied.}, language = {en} } @phdthesis{Herrmann2021, author = {Herrmann, Marc}, title = {The Total Variation on Surfaces and of Surfaces}, doi = {10.25972/OPUS-24073}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-240736}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {This thesis is concerned with applying the total variation (TV) regularizer to surfaces and different types of shape optimization problems. The resulting problems are challenging since they suffer from the non-differentiability of the TV-seminorm, but unlike most other priors it favors piecewise constant solutions, which results in piecewise flat geometries for shape optimization problems.The first part of this thesis deals with an analogue of the TV image reconstruction approach [Rudin, Osher, Fatemi (Physica D, 1992)] for images on smooth surfaces. A rigorous analytical framework is developed for this model and its Fenchel predual, which is a quadratic optimization problem with pointwise inequality constraints on the surface. A function space interior point method is proposed to solve it. Afterwards, a discrete variant (DTV) based on a nodal quadrature formula is defined for piecewise polynomial, globally discontinuous and continuous finite element functions on triangulated surface meshes. DTV has favorable properties, which include a convenient dual representation. Next, an analogue of the total variation prior for the normal vector field along the boundary of smooth shapes in 3D is introduced. Its analysis is based on a differential geometric setting in which the unit normal vector is viewed as an element of the two-dimensional sphere manifold. Shape calculus is used to characterize the relevant derivatives and an variant of the split Bregman method for manifold valued functions is proposed. This is followed by an extension of the total variation prior for the normal vector field for piecewise flat surfaces and the previous variant of split Bregman method is adapted. Numerical experiments confirm that the new prior favours polyhedral shapes.}, subject = {Gestaltoptimierung}, language = {en} } @article{HensgenEnglandHombergetal.2021, author = {Hensgen, Ronja and England, Laura and Homberg, Uwe and Pfeiffer, Keram}, title = {Neuroarchitecture of the central complex in the brain of the honeybee: Neuronal cell types}, series = {Journal of Comparative Neurology}, volume = {529}, journal = {Journal of Comparative Neurology}, doi = {10.1002/cne.24941}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-215566}, pages = {159-186}, year = {2021}, abstract = {The central complex (CX) in the insect brain is a higher order integration center that controls a number of behaviors, most prominently goal directed locomotion. The CX comprises the protocerebral bridge (PB), the upper division of the central body (CBU), the lower division of the central body (CBL), and the paired noduli (NO). Although spatial orientation has been extensively studied in honeybees at the behavioral level, most electrophysiological and anatomical analyses have been carried out in other insect species, leaving the morphology and physiology of neurons that constitute the CX in the honeybee mostly enigmatic. The goal of this study was to morphologically identify neuronal cell types of the CX in the honeybee Apis mellifera. By performing iontophoretic dye injections into the CX, we traced 16 subtypes of neuron that connect a subdivision of the CX with other regions in the bee's central brain, and eight subtypes that mainly interconnect different subdivisions of the CX. They establish extensive connections between the CX and the lateral complex, the superior protocerebrum and the posterior protocerebrum. Characterized neuron classes and subtypes are morphologically similar to those described in other insects, suggesting considerable conservation in the neural network relevant for orientation.}, language = {en} } @phdthesis{Martin2021, author = {Martin, Konstantin}, title = {Current-induced Magnetization Switching by a generated Spin-Orbit Torque in the 3D Topological Insulator Material HgTe}, doi = {10.25972/OPUS-24049}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-240490}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {Magnetic random access memory (MRAM) technology aims to replace dynamic RAM (DRAM) due to its significantly lower power consumption and non-volatility [Dong08]. During the last couple of years the commercial focus was set on spin-transfer torque MRAM (STT-MRAM) systems, where a current is pushed through a ferromagnetic (FM) free layer and a reference layer which are separated by an insulator. The free layer can be set to parallel or anti-parallel depending on the current direction [Kim11]. Unfortunately these currents have to be quite high which could lead to damages of the tunnel barrier of the magnetic tunnel junction resulting in higher power consumption as well as reliability issues. At this point a new effect, where the current is passed below the ferromagnetic layer stack, can be exploited to change the direction of the free layer magnetization. The effect is known as spin-orbit torque (SOT) and describes the transfer of angular momentum onto an adjacent magnetization either by the spin Hall effect (SHE) or inverse spin galvanic effect (iSGE) [Manchon19]. The latter describes a spin accumulation due to a current. This is similar to the process of spin accumulation in TIs, where a current corresponds to an effective spin due to spin-momentum locking [Qi11]. Thus TIs exhibit a high current-to-spin conversion rate, which makes them a promising material system for SOT experiments. Among all TIs it is HgTe, which can be reliably grown as an insulator. This thesis covers the development of a working device for SOT measurements (SOT-device) in a CdTe/CdHgTe/HgTe/CdHgTe heterostructure. It involves the development of a tunnel barrier (ZrOx) as well as the investigation of the behavior of a ferromagnetic layer stack on top of etched HgTe. The main result of this work is the successful construction and evaluation of a working SOT-device, which exhibits the up to date most efficient switching of in-plane magnetized ferromagnetic layer stacks. In order to avoid hybridization between HgTe and the adjacent ferromagnetic atoms, which would cause a breakdown of the topological surface state, it is necessary to implement a thin tunnel barrier in between the TI and free layer [Zhang16]. Aside from hybridization a tunnel barrier avoids shunting of the current, that is pushed on the surface of the HgTe/CdHgTe interface. Thus a bigger part of the current can be used for spin accumulation and, at the same time, the resistance measurement of the ferromagnetic layer stack is not perturbed. In chapter 3 the focus is set on investigating the tunneling characteristics of ZrOx on top of dry etched HgTe. Thin barriers are used as the interaction of the current generated spin and the adjacent magnetization decreases with distance. On the other hand too small insulator thicknesses lead to leakage currents which disturb heavily the measurement of the resistance of the ferromagnetic layer stack. Thus an optimum thickness of 10 ALD cycles (\(d\approx 1.6\rm\, nm\)) is determined which yields a resistance area product of \(R\cdot A \approx 3\rm\, k\Omega\mu m^{2}\). This corresponds to a tunneling resistance of \(R_{T}\approx 20\rm\, k\Omega\) over a structure surface of \(A_{T} = 0.12\rm\, \mu m^2\). Multiple samples with different thicknesses have been produced. All samples have been examined on their tunneling behavior. The resistance area product as a function of thickness shows a linear behavior on a logarithmic scale. Furthermore all working samples show non-linear I-V curves as well as parabolic dI/dV-curves. Additionally the tunneling resistance \(R_{T}\) increases with decreasing temperature. All above mentioned properties are typical for tunnel barriers which do not include pinholes [Jonsson00]. The last part of chapter 3 deals with thermal properties of HgTe. By measuring the second harmonic of a biasing AC current in the channel below the tunnel barrier it is attempted to extract the diffusion thermopower of the heated electrons. Unfortunately the measured signal showed a far superior contribution of the first harmonic. According to electric circuit simulations a small asymmetry in the barrier (penetration and leaving point of electrons) could be responsible for this behavior. A ferromagnetic layer stack, consisting of PY/Cu/CoFe, serves as a sensor for magnetization changes due to external fields and current induced spin accumulations. The layer stack exhibits a giant magnetoresistance (GMR) which has been measured by a resistance bridge. The biggest peculiarity in depositing a GMR stack on top of HgTe is that its easy axis forms along only one of the crystal axes (\((110)\) or \((1\overline{1}0)\)). The reason for this anisotropy is still unclear. Sources such as an influence of the terminating material, miscut, furrows during IBE or sputter ripples have been ruled out. It can be speculated that the surface states due to HgTe might have an influence on the development of this easy axis but this would need further investigation. A consequence of this unexpected anisotropy is that every CdTe/CdHgTe/HgTe/CdHgTe wafer has first to be characterized in SQUID in order to find the easy axis. A ferromagnetic resonance (FMR) measurement confirmed this observation. The shape of the ferromagnetic layer stack is chosen to be an ellipse in order to support the easy axis direction by shape anisotropy. Over 8 million ellipses are used to generate a SQUID signal of \(m > 10^{-5}\rm\, emu\). This is sufficient to extract the main characteristics of an average nano pillar under the influence of an external magnetic field. As in the case of bigger structures the ellipse shaped structure shows a step-like behavior. A measured minor loop confirms the existence of the irreversible anti-parallel stable magnetic state. Furthermore this state persists for both directions at \(m=0\) resulting in an anti-ferromagnetic coupling between Py and CoFe. The geometry of the SOT-device is chosen in such a way that the current induced spin aligns either parallel or anti-parallel to the effective magnetic field \(\vec{B}_{eff}=\vec{B}_{ext}+\vec{B}_{aniso}+\vec{B}_{shape}\), which acts on the pillar. Due to interaction of the spin with the adjacent magnetization of Py the magnetization direction gets changed by a torque \(\vec{T}\). In general this torque can be decomposed into two components a field-like torque \(\vec{\tau}_{FL}\) and a damping-like torque \(\vec{\tau}_{DL}\) [Manchon19]. In the case of TIs \(\vec{T}\) is additionally depending on the z-component of \(\vec{m}\) [Ndiaye17]. In our case the magnetization is lying in the sample plane (\(m_{z}=0\)) which results in \(\vec{\tau}_{DL}=0\). Thus, in the case of \(\vec{S}\parallel\left(\vec{\hat{z}}\times\vec{j}\right)\) and \(\vec{j}\parallel\vec{\hat{y}}\), the only spin dependent effective magnetic field is \(\vec{B}_{FL}=\tau_{FL}\cdot\vec{\hat{x}}\) which is lying parallel or anti-parallel to \(\vec{B}_{eff}\). The evaluation of \(\vec{B}_{FL}\) can therefore be done in the following manner. First a high \(B_{ext}\) has to be set along the easy axis of the pillar. Then \(B_{ext}\) has to be reduced just a few \(\rm\, Oe\) before the switching occurs at the magnetic field \(B_{ext,0}\). At the magnetic field \(\Delta B = B_{ext}-B_{ext,0}\approx 0.5\rm\, Oe\) the lower resistive state should be stable over a longer time range (\(10-30\rm\, min\)) in order to exclude switching due to fluctuations. Now a positive or negative current can be pushed through the channel below the pillar. For one of the two current directions the magnetization of Py switches. It is therefore not a thermal effect that drives the change of \(\vec{m}\). Current densities that are able to switch \(\vec{m}\) at small \(\Delta B\neq 0\) lie in the range of \(j\approx 10^{4}\rm\, A/cm^{2}\). In all experiments the switching efficiency \(\Delta B/j\) decreases with rising \(j\). Furthermore the efficiency as a function of \(j\) depends on the temperature as \(\Delta B/j\) values tend to be up to 20 times higher at \(T=1.8\rm\, K\) and \(j\approx 0\) than at \(T=4.2\rm\, K\). This temperature dependence suggests that switching occurs not due to Oersted fields. Furthermore the Biot-Savart fields had been calculated for four different models: an infinite long rectangular wire, two infinite planes, a full volume and two thin volume planes. Every model shows an efficiency, which is at least three times lower than the observation. The highest efficiencies in our samples show up to 10 times higher values than in heavy-metal/ferromagnets heterostructures. In contrast to measurement procedures of most other groups our method leads to direct determination of SOT parameters like the effective magnetic field \(\vec{B}_{FL}\). Other groups make use of spin-transfer FMR (ST-FMR) where they AC bias their structure and extract SOT parameters (like \(\tau_{FL}\) and \(\tau_{DL}\)) from second harmonics by fitting theoretical models. Material systems consisting of TIs and magnetic insulators (MIs) on the other hand show 10 times higher efficiencies [Khang18,Li19]. In those cases the magnetization points out of the sample plane which is conceptually different from in-plane magnetic anisotropy geometries like in our case. The greatest benefit in-plane magnetic anisotropy systems is its easy realisation [Bhatti17]. Here only an elliptical shape has to be lithographically implemented instead of conducting research on the appropriate combination of material systems that result in perpendicular magnetic anisotropies [Apalkov16]. Despite the fact that in our case only \(\vec{\tau}_{FL}\) acts as the driving force for changing \(m\) our device still exhibits the up to date highest efficiencies in the class of in-plane magnetized anisotropies of all material classes ever recorded.}, language = {en} } @phdthesis{Notz2021, author = {Notz, Pascal Markus}, title = {Prescriptive Analytics for Data-driven Capacity Management}, doi = {10.25972/OPUS-24042}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-240423}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {Digitization and artificial intelligence are radically changing virtually all areas across business and society. These developments are mainly driven by the technology of machine learning (ML), which is enabled by the coming together of large amounts of training data, statistical learning theory, and sufficient computational power. This technology forms the basis for the development of new approaches to solve classical planning problems of Operations Research (OR): prescriptive analytics approaches integrate ML prediction and OR optimization into a single prescription step, so they learn from historical observations of demand and a set of features (co-variates) and provide a model that directly prescribes future decisions. These novel approaches provide enormous potential to improve planning decisions, as first case reports showed, and, consequently, constitute a new field of research in Operations Management (OM). First works in this new field of research have studied approaches to solving comparatively simple planning problems in the area of inventory management. However, common OM planning problems often have a more complex structure, and many of these complex planning problems are within the domain of capacity planning. Therefore, this dissertation focuses on developing new prescriptive analytics approaches for complex capacity management problems. This dissertation consists of three independent articles that develop new prescriptive approaches and use these to solve realistic capacity planning problems. The first article, "Prescriptive Analytics for Flexible Capacity Management", develops two prescriptive analytics approaches, weighted sample average approximation (wSAA) and kernelized empirical risk minimization (kERM), to solve a complex two-stage capacity planning problem that has been studied extensively in the literature: a logistics service provider sorts daily incoming mail items on three service lines that must be staffed on a weekly basis. This article is the first to develop a kERM approach to solve a complex two-stage stochastic capacity planning problem with matrix-valued observations of demand and vector-valued decisions. The article develops out-of-sample performance guarantees for kERM and various kernels, and shows the universal approximation property when using a universal kernel. The results of the numerical study suggest that prescriptive analytics approaches may lead to significant improvements in performance compared to traditional two-step approaches or SAA and that their performance is more robust to variations in the exogenous cost parameters. The second article, "Prescriptive Analytics for a Multi-Shift Staffing Problem", uses prescriptive analytics approaches to solve the (queuing-type) multi-shift staffing problem (MSSP) of an aviation maintenance provider that receives customer requests of uncertain number and at uncertain arrival times throughout each day and plans staff capacity for two shifts. This planning problem is particularly complex because the order inflow and processing are modelled as a queuing system, and the demand in each day is non-stationary. The article addresses this complexity by deriving an approximation of the MSSP that enables the planning problem to be solved using wSAA, kERM, and a novel Optimization Prediction approach. A numerical evaluation shows that wSAA leads to the best performance in this particular case. The solution method developed in this article builds a foundation for solving queuing-type planning problems using prescriptive analytics approaches, so it bridges the "worlds" of queuing theory and prescriptive analytics. The third article, "Explainable Subgradient Tree Boosting for Prescriptive Analytics in Operations Management" proposes a novel prescriptive analytics approach to solve the two capacity planning problems studied in the first and second articles that allows decision-makers to derive explanations for prescribed decisions: Subgradient Tree Boosting (STB). STB combines the machine learning method Gradient Boosting with SAA and relies on subgradients because the cost function of OR planning problems often cannot be differentiated. A comprehensive numerical analysis suggests that STB can lead to a prescription performance that is comparable to that of wSAA and kERM. The explainability of STB prescriptions is demonstrated by breaking exemplary decisions down into the impacts of individual features. The novel STB approach is an attractive choice not only because of its prescription performance, but also because of the explainability that helps decision-makers understand the causality behind the prescriptions. The results presented in these three articles demonstrate that using prescriptive analytics approaches, such as wSAA, kERM, and STB, to solve complex planning problems can lead to significantly better decisions compared to traditional approaches that neglect feature data or rely on a parametric distribution estimation.}, subject = {Maschinelles Lernen}, language = {en} } @article{BruecknerHessStennettetal.2021, author = {Br{\"u}ckner, Tobias and Heß, Merlin and Stennett, Tom E. and Rempel, Anna and Braunschweig, Holger}, title = {Synthesis of Boron Analogues of Enamines via Hydroamination of a Boron-Boron Triple Bond}, series = {Angewandte Chemie, International Edition}, volume = {60}, journal = {Angewandte Chemie, International Edition}, number = {2}, doi = {10.1002/anie.202012101}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-240669}, pages = {736-741}, year = {2021}, abstract = {An N-heterocyclic-carbene-stabilized diboryne undergoes rapid, high-yielding and catalyst-free hydroamina- tion reactions with primary amines, yielding 1-amino-2-hydro- diborenes, which can be considered boron analogues of enamines. The electronics of the organic substituent at nitrogen influence the structure and further reactivity of the diborene product. With electron-rich anilines, a second hydroamination can occur at the diborene to generate 1,1-diamino-2,2-dihy- drodiboranes. With isopropylamine, the electronic influence of the alkyl substituent upon the diborene leads to an unprece- dented boron-mediated intramolecular N-dearylation reaction of an N-heterocyclic carbene unit.}, language = {en} } @phdthesis{Maier2021, author = {Maier, Jan Richard}, title = {Investigations of Metal-free Cannibalistic Hexadehydro-Diels-Alder and Pt-catalyzed Dimerization Reactions of Linked Aryl Bisdiynes}, doi = {10.25972/OPUS-24041}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-240411}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {The introductory chapter reviews the current state of mechanistic understanding of the hexadehydro-Diels-Alder (HDDA) reaction. With the rapid development of the HDDA reaction from its first discovery in 1997, the question of whether a concerted or stepwise mechanism better describes the thermally activated formation of ortho-benzyne from a diyne and a diynophile has been debated. Mechanistic and kinetic investigations were able to show that this is not a black or white situation, as minor changes can tip the balance. In chapter 2 of this thesis, the catalytic process leading from 1,11-bis(p-tolyl)undeca-1,3,8,10-tetrayne to fully-substituted naphthalene and azulene derivatives, by two different platinum-catalyzed dimerization pathways, was investigated. In chapter 3, the cannibalistic self-trapping reaction of an ortho-benzyne derivative generated from 1,11-bis(p-tolyl)undeca-1,3,8,10-tetrayne in an HDDA reaction was investigated. Without adding any specific trapping agent, the highly reactive benzyne is trapped by another bisdiyne molecule in at least three different modes. In chapter 4 direct UV/VIS spectroscopic evidence for the existence of an o-benzyne in solution is reported, and the dynamics of its formation in a photo-induced reaction are established. For this purpose, 1,11-bis(p-tolyl)undeca-1,3,8,10-tetrayne was investigated, using femtosecond transient absorption spectroscopy in the ultraviolet/visible region. In chapter 5, following the isolation and characterization of the reaction products discussed in chapter 3, further species resulting from reactions of the highly reactive ortho-benzyne derivative were identified.}, subject = {Diels-Alder-Reaktion}, language = {en} } @article{Hoelscher‑DohtKladnyPauletal.2021, author = {Hoelscher‑Doht, Stefanie and Kladny, A.-M. and Paul, M. M. and Eden, L. and Buesse, M. and Meffert, R. H.}, title = {Low-profile double plating versus dorsal LCP in stabilization of the olecranon fractures}, series = {Archives of Orthopaedic and Trauma Surgery}, volume = {145}, journal = {Archives of Orthopaedic and Trauma Surgery}, issn = {0936-8051}, doi = {10.1007/s00402-020-03473-9}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-235844}, pages = {245-251}, year = {2021}, abstract = {Introduction Proximal ulna fractures are common in orthopaedic surgery. Comminuted fractures require a high primary stability by the osteosynthesis, to allow an early functional rehabilitation as fast as possible, to reduce long-term limitations of range of motion. Classical dorsal plating is related to wound healing problems due to the prominence of the implant. New low-profile double plates are available addressing the soft tissue problems by positioning the plates at the medial and lateral side. This study analysed whether, under high loading conditions, these new double plates provide an equivalent stability as compared to the rigid olecranon locking compression plate (LCP). Materials and methods In Sawbones, Mayo Type IIB fractures were simulated and stabilized by plate osteosyntheses: In group one, two low-profile plates were placed. In group two, a single dorsal plate (LCP) was used. The bones was than cyclically loaded simulating flexion grades of 0°, 30°, 60° and 90° of the elbow joint with increasing tension forces (150 , 150 , 300 and 500 N). The displacement and fracture gap movement were recorded. In the end, in load-to-failure tests, load at failure and mode of failure were determined. Results No significant differences were found for the displacement and fracture gap widening during cyclic loading. Under maximum loading, the double plates revealed a comparable load at failure like the single dorsal plate (LCP). The double plates failed with a proximal screw pull-out of the plate, whereas in the LCP group, in 10 out of 12 specimens the mode of failure was a diaphyseal shaft fracture at the distal plate peak. Conclusion Biomechanically, the double plates are a good alternative to the dorsal LCP providing a high stability under high loading conditions and, at the same, time reducing the soft tissue irritation by a lateral plate position.}, language = {en} } @article{FreimannDierkesPetermannetal.2021, author = {Freimann, A. and Dierkes, M. and Petermann, T. and Liman, C. and Kempf, F. and Schilling, K.}, title = {ESTNeT: a discrete event simulator for space-terrestrial networks}, series = {CEAS Space Journal}, volume = {13}, journal = {CEAS Space Journal}, issn = {1868-2502}, doi = {10.1007/s12567-020-00316-6}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-235835}, pages = {39-49}, year = {2021}, abstract = {The capabilities of small satellites have improved significantly in recent years. Specifically multi-satellite systems become increasingly popular, since they allow the support of new applications. The development and testing of these multi-satellite systems is a new challenge for engineers and requires the implementation of appropriate development and testing environments. In this paper, a modular network simulation framework for space-terrestrial systems is presented. It enables discrete event simulations for the development and testing of communication protocols, as well as mission-based analysis of other satellite system aspects, such as power supply and attitude control. ESTNeT is based on the discrete event simulator OMNeT++ and will be released under an open source license.}, language = {en} } @article{AntonRoessler2021, author = {Anton, Sylvia and R{\"o}ssler, Wolfgang}, title = {Plasticity and modulation of olfactory circuits in insects}, series = {Cell and Tissue Research}, volume = {383}, journal = {Cell and Tissue Research}, issn = {0302-766X}, doi = {10.1007/s00441-020-03329-z}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-235820}, pages = {149-164}, year = {2021}, abstract = {Olfactory circuits change structurally and physiologically during development and adult life. This allows insects to respond to olfactory cues in an appropriate and adaptive way according to their physiological and behavioral state, and to adapt to their specific abiotic and biotic natural environment. We highlight here findings on olfactory plasticity and modulation in various model and non-model insects with an emphasis on moths and social Hymenoptera. Different categories of plasticity occur in the olfactory systems of insects. One type relates to the reproductive or feeding state, as well as to adult age. Another type of plasticity is context-dependent and includes influences of the immediate sensory and abiotic environment, but also environmental conditions during postembryonic development, periods of adult behavioral maturation, and short- and long-term sensory experience. Finally, plasticity in olfactory circuits is linked to associative learning and memory formation. The vast majority of the available literature summarized here deals with plasticity in primary and secondary olfactory brain centers, but also peripheral modulation is treated. The described molecular, physiological, and structural neuronal changes occur under the influence of neuromodulators such as biogenic amines, neuropeptides, and hormones, but the mechanisms through which they act are only beginning to be analyzed.}, language = {en} } @article{EngertRakBieniussaetal.2021, author = {Engert, Jonas and Rak, Kristen and Bieniussa, Linsa and Scholl, Miriam and Hagen, Rudolf and V{\"o}lker, Johannes}, title = {Evaluation of the Neurogenic Potential in the Rat Inferior Colliculus from Early Postnatal Days Until Adulthood}, series = {Molecular Neurobiology}, volume = {58}, journal = {Molecular Neurobiology}, issn = {0893-7648}, doi = {10.1007/s12035-020-02151-6}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-235811}, pages = {719-734}, year = {2021}, abstract = {Neural stem cells (NSCs) have been recently identified in the inferior colliculus (IC). These cells are of particular interest, as no casual therapeutic options for impaired neural structures exist. This research project aims to evaluate the neurogenic potential in the rat IC from early postnatal days until adulthood. The IC of rats from postnatal day 6 up to 48 was examined by neurosphere assays and histological sections. In free-floating IC cell cultures, neurospheres formed from animals from early postnatal to adulthood. The amount of generated neurospheres decreased in older ages and increased with the number of cell line passages. Cells in the neurospheres and the histological sections stained positively with NSC markers (Doublecortin, Sox-2, Musashi-1, Nestin, and Atoh1). Dissociated single cells from the neurospheres differentiated and were stained positively for the neural lineage markers β-III-tubulin, glial fibrillary acidic protein, and myelin basic protein. In addition, NSC markers (Doublecortin, Sox-2, CDK5R1, and Ascl-1) were investigated by qRT-PCR. In conclusion, a neurogenic potential in the rat IC was detected and evaluated from early postnatal days until adulthood. The identification of NSCs in the rat IC and their age-specific characteristics contribute to a better understanding of the development and the plasticity of the auditory pathway and might be activated for therapeutic use.}, language = {en} } @article{Bartfeld2021, author = {Bartfeld, Sina}, title = {Realizing the potential of organoids — an interview with Hans Clevers}, series = {Journal of Molecular Medicine}, volume = {99}, journal = {Journal of Molecular Medicine}, issn = {Journal of Molecular Medicine}, doi = {10.1007/s00109-020-02025-3}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-235804}, pages = {443-447}, year = {2021}, abstract = {No abstract available.}, language = {en} } @article{GenestClaussenRaketal.2021, author = {Genest, F. and Claußen, L. and Rak, D. and Seefried, L.}, title = {Bone mineral density and fracture risk in adult patients with hypophosphatasia}, series = {Osteoporosis International}, volume = {32}, journal = {Osteoporosis International}, issn = {0937-941X}, doi = {10.1007/s00198-020-05612-9}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-235793}, pages = {377-385}, year = {2021}, abstract = {Summary In adult hypophosphatasia (HPP) patients, elevated lumbar spine dual X-ray absorptiometry (DXA) values are associated with markers of disease severity and disease-specific fracture risk while femoral bone mineral density (BMD), being largely unaffected by the disease severity, may still be useful to monitor other causes of increased fracture risk due to low BMD. Introduction Hypophosphatasia (HPP) is a rare inherited metabolic disorder due to deficient activity of the tissue-nonspecific alkaline phosphatase (TNAP). Clinical manifestation in adult HPP patients is manifold including an increased risk for fractures, but data regarding clinical significance of DXA measurement and associations with fracture risk and disease severity is scarce. Methods Retrospective single-center analysis of DXA scans in patients with confirmed HPP (documented mutation, clinical symptoms, low alkaline phosphatase activity). Further data evaluation included disease-related fractures, laboratory results (alkaline phosphatase, pyridoxalphosphate, phosphoethanolamine), and medical history. Results Analysis included 110 patients (84 female, mean age of 46.2 years) of whom 37.3\% (n = 41) were harboring two mutations. Average T-Score level at the lumbar spine was - 0.1 (SD 1.9), and mean total hip T-Score was - 1.07 (SD 0.15). Both lower ALP activity and higher substrate levels (pyridoxalphosphate and phosphoethanolamine) were significantly correlated with increased lumbar spine T-Score levels (p < 0.001) while BMD at the hip was not affected by indicators of disease severity. Increased lumbar spine BMD was significantly associated with an increased risk for HPP-related fractures, prevalent in 22 (20\%) patients (p < 0.001) with 21 of them having biallelic mutations. Conclusion BMD in adult HPP patients is not systematically reduced. Conversely, increased lumbar spine BMD appears to be associated with severely compromised mineralization and increased risk for HPP-related fractures while BMD at the hip appears unaffected by indicators of disease severity, suggesting suitability of this anatomic location for assessing and discerning disorders with increased fracture risk owing to reduced BMD like osteoporosis. Trial registration number German register for clinical studies (DRKS00014022) Date of registration 02/10/2018 - retrospectively registered}, language = {en} } @article{CapetianRoessnerKorteetal.2021, author = {Capetian, Philipp and Roessner, Veit and Korte, Caroline and Walitza, Susanne and Riederer, Franz and Taurines, Regina and Gerlach, Manfred and Moser, Andreas}, title = {Altered urinary tetrahydroisoquinoline derivatives in patients with Tourette syndrome: reflection of dopaminergic hyperactivity?}, series = {Journal of Neural Transmission}, volume = {128}, journal = {Journal of Neural Transmission}, issn = {0300-9564}, doi = {10.1007/s00702-020-02289-6}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-235771}, pages = {115-121}, year = {2021}, abstract = {Tetrahydroisoquinolines (TIQs) such as salsolinol (SAL), norsalsolinol (NSAL) and their methylated derivatives N-methyl-norsalsolinol (NMNSAL) and N-methyl-salsolinol (NMSAL), modulate dopaminergic neurotransmission and metabolism in the central nervous system. Dopaminergic neurotransmission is thought to play an important role in the pathophysiology of chronic tic disorders, such as Tourette syndrome (TS). Therefore, the urinary concentrations of these TIQ derivatives were measured in patients with TS and patients with comorbid attention-deficit/hyperactivity disorder (TS + ADHD) compared with controls. Seventeen patients with TS, 12 with TS and ADHD, and 19 age-matched healthy controls with no medication took part in this study. Free levels of NSAL, NMNSAL, SAL, and NMSAL in urine were measured by a two-phase chromatographic approach. Furthermore, individual TIQ concentrations in TS patients were used in receiver-operating characteristics (ROC) curve analysis to examine the diagnostic value. NSAL concentrations were elevated significantly in TS [434.67 ± 55.4 nmol/l (standard error of mean = S.E.M.), two-way ANOVA, p < 0.0001] and TS + ADHD patients [605.18 ± 170.21 nmol/l (S.E.M.), two-way ANOVA, p < 0.0001] compared with controls [107.02 ± 33.18 nmol/l (S.E.M.), two-way ANOVA, p < 0.0001] and NSAL levels in TS + ADHD patients were elevated significantly in comparison with TS patients (two-way ANOVA, p = 0.017). NSAL demonstrated an AUC of 0.93 ± 0.046 (S.E.M) the highest diagnostic value of all metabolites for the diagnosis of TS. Our results suggest a dopaminergic hyperactivity underlying the pathophysiology of TS and ADHD. In addition, NSAL concentrations in urine may be a potential diagnostic biomarker of TS.}, language = {en} } @article{HoseSchrederHefneretal.2021, author = {Hose, Dorothea and Schreder, Martin and Hefner, Jochen and Bittrich, Max and Danhof, Sophia and Strifler, Susanne and Krauth, Maria-Theresa and Schoder, Renate and Gisslinger, Bettina and Einsele, Hermann and Gisslinger, Heinz and Knop, Stefan}, title = {Elotuzumab, pomalidomide, and dexamethasone is a very well tolerated regimen associated with durable remission even in very advanced myeloma: a retrospective study from two academic centers}, series = {Journal of Cancer Research and Clinical Oncology}, volume = {147}, journal = {Journal of Cancer Research and Clinical Oncology}, issn = {0171-5216}, doi = {10.1007/s00432-020-03323-6}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-235762}, pages = {205-212}, year = {2021}, abstract = {Background The anti-SLAMF7 monoclonal antibody, elotuzumab (elo), plus lenalidomide (len) and dexamethasone (dex) is approved for relapsed/refractory MM in the U.S. and Europe. Recently, a small phase 2 study demonstrated an advantage in progression-free survival (PFS) for elo plus pomalidomide (pom)/dex compared to pom/dex alone and resulted in licensing of this novel triplet combination, but clinical experience is still limited. Purpose To analyze the efficacy and safety of elo/pom/dex in a "real world" cohort of patients with advanced MM, we queried the databases of the university hospitals of W{\"u}rzburg and Vienna. Findings We identified 22 patients with a median number of five prior lines of therapy who received elo/pom/dex prior to licensing within an early access program. Patients received a median number of 5 four-week treatment cycles. Median PFS was 6.4 months with 12-month and 18-month PFS rates of 35\% and 28\%, respectively. The overall response rate was 50\% and 64\% of responding patients who achieved a longer PFS with elo/pom/dex compared to their most recent line of therapy. Objective responses were also seen in five patients who had been pretreated with pomalidomide. Low tumor burden was associated with improved PFS (13.5 months for patients with ISS stage I/II at study entry v 6.4 months for ISS III), although this difference did not reach statistical significance. No infusion-related reactions were reported. The most frequent grade 3/4 adverse events were neutropenia and pneumonia. Conclusion Elo/pom/dex is an active and well-tolerated regimen in highly advanced MM even after pretreatment with pomalidomide.}, language = {en} } @article{BoelchGurokGilbertetal.2021, author = {Boelch, Sebastian P. and Gurok, Anna and Gilbert, Fabian and Weißenberger, Manuel and Rudert, Maximilian and Barthel, Thomas and Reppenhagen, Stephan}, title = {Why compromise the patella? Five-year follow-up results of medial patellofemoral ligament reconstruction with soft tissue patellar fixation}, series = {International Orthopaedics}, volume = {45}, journal = {International Orthopaedics}, issn = {0341-2695}, doi = {10.1007/s00264-020-04922-1}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-235751}, pages = {1493-1500}, year = {2021}, abstract = {Purpose This study investigates the redislocation rate and functional outcome at a minimum follow-up of five years after medial patellofemoral ligament (MPFL) reconstruction with soft tissue patellar fixation for patella instability. Methods Patients were retrospectively identified and knees were evaluated for trochlea dysplasia according to Dejour, for presence of patella alta and for presence of cartilage lesion at surgery. At a minimum follow-up of five years, information about an incident of redislocation was obtained. Kujala, Lysholm, and Tegner questionnaires as well as range of motion were used to measure functional outcome. Results Eighty-nine knees were included. Follow-up rate for redislocation was 79.8\% and for functional outcome 58.4\%. After a mean follow-up of 5.8 years, the redislocation rate was 5.6\%. There was significant improvement of the Kujala score (68.8 to 88.2, p = 0.000) and of the Lysholm score (71.3 to 88.4, p = 0.000). Range of motion at follow-up was 149.0° (115-165). 77.5\% of the knees had patella alta and 52.9\% trochlear dysplasia types B, C, or D. Patellar cartilage legions were present in 54.2\%. Redislocations occurred in knees with trochlear dysplasia type C in combination with patella alta. Conclusion MPFL reconstruction with soft tissue patellar fixation leads to significant improvement of knee function and low midterm redislocation rate. Patients with high-grade trochlear dysplasia should be considered for additional osseous correction.}, language = {en} }