@article{FoersterBeisserGrohmeetal.2012, author = {F{\"o}rster, Frank and Beisser, Daniela and Grohme, Markus A. and Liang, Chunguang and Mali, Brahim and Siegl, Alexander Matthias and Engelmann, Julia C. and Shkumatov, Alexander V. and Schokraie, Elham and M{\"u}ller, Tobias and Schn{\"o}lzer, Martina and Schill, Ralph O. and Frohme, Marcus and Dandekar, Thomas}, title = {Transcriptome analysis in tardigrade species reveals specific molecular pathways for stress adaptations}, series = {Bioinformatics and biology insights}, volume = {6}, journal = {Bioinformatics and biology insights}, doi = {10.4137/BBI.S9150}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-123089}, pages = {69-96}, year = {2012}, abstract = {Tardigrades have unique stress-adaptations that allow them to survive extremes of cold, heat, radiation and vacuum. To study this, encoded protein clusters and pathways from an ongoing transcriptome study on the tardigrade \(Milnesium\) \(tardigradum\) were analyzed using bioinformatics tools and compared to expressed sequence tags (ESTs) from \(Hypsibius\) \(dujardini\), revealing major pathways involved in resistance against extreme environmental conditions. ESTs are available on the Tardigrade Workbench along with software and databank updates. Our analysis reveals that RNA stability motifs for \(M.\) \(tardigradum\) are different from typical motifs known from higher animals. \(M.\) \(tardigradum\) and \(H.\) \(dujardini\) protein clusters and conserved domains imply metabolic storage pathways for glycogen, glycolipids and specific secondary metabolism as well as stress response pathways (including heat shock proteins, bmh2, and specific repair pathways). Redox-, DNA-, stress- and protein protection pathways complement specific repair capabilities to achieve the strong robustness of \(M.\) \(tardigradum\). These pathways are partly conserved in other animals and their manipulation could boost stress adaptation even in human cells. However, the unique combination of resistance and repair pathways make tardigrades and \(M.\) \(tardigradum\) in particular so highly stress resistant.}, language = {en} } @phdthesis{Herrmann2012, author = {Herrmann, Leonie Judith Maria}, title = {TP53 Mutationen und Polymorphismen bei erwachsenen Patienten mit Nebennierenrindenkarzinom}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-93786}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2012}, abstract = {Das Nebennierenrindenkarzinom (NNR-Ca) geh{\"o}rt mit einer Inzidenz von 1-2/1000000 zu den seltenen malignen Neubildungen. Neben Sarkomen, Hirntumoren, Brustkrebs und Leuk{\"a}mie geh{\"o}rt das NNR-Ca zu den Kerntumoren, durch die das selten vorkommende autosomal dominante Tumor-Pr{\"a}dispositions Syndrom, das Li Fraumeni Syndrom (LFS) gekennzeichnet ist. Das LFS wird mit Keimbahnmutationen im Tumorsuppressor Gen TP53 in Verbindung gebracht. Die vorliegende Arbeit untersucht TP53 Keimbahnmutationen und -polymorphismen und ihre Auswirkung auf klinische Faktoren bei einem großen Kollektiv von erwachsenen NNR-Ca Patienten. Es wurde DNS aus Blut und teilweise aus Tumorgewebe von Patienten aus dem Deutschen Nebennierenrindenkarzinom Register extrahiert und die Exons 2 bis 11 von TP53 sequenziert. Dar{\"u}ber hinaus wurde der Nachweis der Mutationen und eines Loss of Heterozgosity von TP53 im Tumorgewebe und die immunhistochemische F{\"a}rbung von p53 vorgenommen. Die anschließende Auswertung der Daten erfolgte unter Einbeziehung des klinischen Verlaufs der Krankheit bei den Patienten. In dieser Arbeit konnten vier NNR-Ca Patienten (3,9 \%) mit mindestens einer Keimbahnmutation im TP53 identifiziert werden, bei den unter 40-j{\"a}hrigen entspricht dies einem Anteil von 13,0 \%. Unter der Altersgrenze von 40 Jahren sollte daher ein TP53 Mutationsscreening erwogen werden. Die Auswertung der Polymorphismen zeigte, dass diese einen Einfluss auf die Entstehung und den klinischen Verlauf des NNR-Cas zu haben scheinen, jedoch weitere Studien n{\"o}tig sind.}, subject = {TP53}, language = {de} } @phdthesis{Thielen2012, author = {Thielen, Sebastian}, title = {Toxizit{\"a}t von Stickstoffdioxid in realer Umweltkonzentration}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-83640}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2012}, abstract = {Toxizit{\"a}t von Stickstoffdioxid in realer Umweltkonzentration}, subject = {Stickstoffoxide}, language = {de} } @phdthesis{Aminake2012, author = {Aminake, Makoah Nigel}, title = {Towards malaria combination therapy: Characterization of hybrid molecules for HIV/malaria combination therapy and of thiostrepton as a proteasome-targeting antibiotic with a dual mode of action}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-71841}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2012}, abstract = {Malaria and HIV are among the most important global health problems of our time and together are responsible for approximately 3 million deaths annually. These two diseases overlap in many regions of the world including sub-Saharan Africa, Southeast Asia and South America, leading to a higher risk of co-infection. In this study, we generated and characterized hybrid molecules to target P. falciparum and HIV simultaneously for a potential HIV/malaria combination therapy. Hybrid molecules were synthesized by covalent fusion between azidothymidine (AZT) and dihydroartemisinin (DHA), tetraoxane or chloroquine (CQ); and a small library was generated and tested for antiviral and antimalarial activity. Our data suggest that dihyate is the most potent molecule in vitro, with antiplasmodial activity comparable to that of DHA (IC50 = 26 nM, SI > 3000), a moderate activity against HIV (IC50 = 2.9 µM; SI > 35) and safe to HeLa cells at concentrations used in the assay (CC50 > 100 µM). Pharmacokinetic studies further revealed that dihyate is metabolically unstable and is cleaved following an O-dealkylation once in contact with cytochrome P450 enzymes. The later further explains the uneffectiveness of dihyate against the CQ-sensitive P. berghei N strain in mice when administered by oral route at 20 mg/kg. Here, we report on a first approach to develop antimalarial/anti-HIV hybrid molecules and future optimization efforts will aim at producing second generation hybrid molecules to improve activity against HIV as well as compound bioavailability. With the emergence of resistant parasites against all the counterpart drugs of artemisinin derivatives used in artemisinin based combination therapies (ACTs), the introduction of antibiotics in the treatment of malaria has renewed interest on the identification of antibiotics with potent antimalarial properties. In this study we also investigated the antiplasmodial potential of thiostrepton and derivatives, synthesized using combinations of tail truncation, oxidation, and addition of lipophilic thiols to the terminal dehydroamino acid. We showed that derivatives SS231 and SS234 exhibit a better antiplasmodial activity (IC50 = 1 µM SI > 59 and SI > 77 respectively) than thiostrepton (IC50 = 8.95 µM, SI = 1.7). The antiplasmodial activity of these derivatives was observed at concentrations which are not hemolytic and non-toxic to human cell lines. Thiostrepton and derivatives appeared to exhibit transmission blocking properties when administered at their IC50 or IC90 concentrations and our data also showed that they attenuate proteasome activity of Plasmodium, which resulted in an accumulation of ubiquitinated proteins after incubation with their IC80 concentrations. Our results indicate that the parasite's proteasome could be an attractive target for therapeutic intervention. In this regard, thiostrepton derivatives are promising candidates by dually acting on two independent targets, the proteasome and the apicoplast, with the capacity to eliminate both intraerythrocytic asexual and transmission stages of the parasite. To further support our findings, we evaluated the activity of a new class of antimalarial and proteasome inhibitors namely peptidyl sulfonyl fluorides on gametocyte maturation and analogues AJ34 and AJ38 were able to completely suppress gametocytogenesis at IC50 concentrations (0.23 µM and 0.17 µM respectively) suggesting a strong transmission blocking potential. The proteasome, a major proteolytic complex, responsible for the degradation and re-cycling of non-functional proteins has been studied only indirectly in P. falciparum. In addition, an apparent proteasome-like protein with similarity to bacterial ClpQ/hslV threonine-peptidases was predicted in the parasite. Antibodies were generated against the proteasome subunits alpha type 5 (α5-SU), beta type 5 (β5-SU) and pfhslV in mice and we showed that the proteasome is expressed in both sexual and asexual blood stages of P. falciparum, where they localize in the nucleus and in the cytoplasm. However, expression of PfhslV was only observed in trophozoites and shizonts. The trafficking of the studied proteasome subunits was further investigated by generating parasites expressing GFP tagged proteins. The expression of α5-SU-GFP in transgenic parasite appeared to localize abundantly in the cytoplasm of all blood stages, and no additional information was obtained from this parasite line. In conclusion, our data highlight two new tools towards combination therapy. Hybrid molecules represent promising tools for the cure of co-infected individuals, while very potent antibiotics with a wide scope of activities could be useful in ACTs by eliminating resistant parasites and limiting transmission of both, resistances and disease.}, subject = {Malaria}, language = {en} } @phdthesis{Mueller2012, author = {M{\"u}ller, Andreas}, title = {Towards functional oxide heterostructures}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-72478}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2012}, abstract = {Oxide heterostructures attract a lot of attention as they display a vast range of physical phenomena like conductivity, magnetism, or even superconductivity. In most cases, these effects are caused by electron correlations and are therefore interesting for studying fundamental physics, but also in view of future applications. This thesis deals with the growth and characterization of several prototypical oxide heterostructures. Fe3O4 is highly ranked as a possible spin electrode in the field of spintronics. A suitable semiconductor for spin injection in combination with Fe3O4 is ZnO due to its oxide character and a sufficiently long spin coherence length. Fe3O4 has been grown successfully on ZnO using pulsed laser deposition and molecular beam epitaxy by choosing the oxygen partial pressure adequately. Here, a pressure variation during growth reduces an FeO-like interface layer. Fe3O4 films grow in an island-like growth mode and are structurally nearly fully relaxed, exhibiting the same lattice constants as the bulk materials. Despite the presence of a slight oxygen off-stoichiometry, indications of the Verwey transition hint at high-quality film properties. The overall magnetization of the films is reduced compared to bulk Fe3O4 and a slow magnetization behavior is observed, most probably due to defects like anti-phase boundaries originating from the initial island growth. LaAlO3/SrTiO3 heterostructures exhibit a conducting interface above a critical film thickness, which is most likely explained by an electronic reconstruction. In the corresponding model, the potential built-up owing to the polar LaAlO3 overlayer is compensated by a charge transfer from the film surface to the interface. The properties of these heterostructures strongly depend on the growth parameters. It is shown for the first time, that it is mainly the total pressure which determines the macroscopic sample properties, while it is the oxygen partial pressure which controls the amount of charge carriers near the interface. Oxygen-vacancy-mediated conductivity is found for too low oxygen pressures. A too high total pressure, however, destroys interface conductivity, most probably due to a change of the growth kinetics. Post-oxidation leads to a metastable state removing the arbitrariness in controlling the electronic interface properties by the oxygen pressure during growth. LaVO3/SrTiO3 heterostructures exhibit similar behavior compared to LaAlO3/SrTiO3 when it comes to a thickness-dependent metal-insulator transition. But in contrast to LaAlO3, LaVO3 is a Mott insulator exhibiting strong electron correlations. Films have been grown by pulsed laser deposition. Layer-by-layer growth and a phase-pure pervoskite lattice structure is observed, indicating good structural quality of the film and the interface. An electron-rich layer is found near the interface on the LaVO3 side for conducting LaVO3/SrTiO3. This could be explained by an electronic reconstruction within the film. The electrostatic doping results in a band-filling-controlled metal-insulator transition without suffering from chemical impurities, which is unavoidable in conventional doping experiments.}, subject = {Oxide}, language = {en} } @unpublished{Nassourou2012, author = {Nassourou, Mohamadou}, title = {Towards a Knowledge-Based Learning System for The Quranic Text}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-70003}, year = {2012}, abstract = {In this research, an attempt to create a knowledge-based learning system for the Quranic text has been performed. The knowledge base is made up of the Quranic text along with detailed information about each chapter and verse, and some rules. The system offers the possibility to study the Quran through web-based interfaces, implementing novel visualization techniques for browsing, querying, consulting, and testing the acquired knowledge. Additionally the system possesses knowledge acquisition facilities for maintaining the knowledge base.}, subject = {Wissensbanksystem}, language = {en} } @article{HerbortButz2012, author = {Herbort, Oliver and Butz, Martin V.}, title = {Too good to be true? Ideomotor theory from a computational perspective}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-76383}, year = {2012}, abstract = {In recent years, Ideomotor Theory has regained widespread attention and sparked the development of a number of theories on goal-directed behavior and learning. However, there are two issues with previous studies' use of Ideomotor Theory. Although Ideomotor Theory is seen as very general, it is often studied in settings that are considerably more simplistic than most natural situations. Moreover, Ideomotor Theory's claim that effect anticipations directly trigger actions and that action-effect learning is based on the formation of direct action-effect associations is hard to address empirically. We address these points from a computational perspective. A simple computational model of Ideomotor Theory was tested in tasks with different degrees of complexity.The model evaluation showed that Ideomotor Theory is a computationally feasible approach for understanding efficient action-effect learning for goal-directed behavior if the following preconditions are met: (1) The range of potential actions and effects has to be restricted. (2) Effects have to follow actions within a short time window. (3) Actions have to be simple and may not require sequencing. The first two preconditions also limit human performance and thus support Ideomotor Theory. The last precondition can be circumvented by extending the model with more complex, indirect action generation processes. In conclusion, we suggest that IdeomotorTheory offers a comprehensive framework to understand action-effect learning. However, we also suggest that additional processes may mediate the conversion of effect anticipations into actions in many situations.}, subject = {Psychologie}, language = {en} } @phdthesis{Mauder2012, author = {Mauder, Markus}, title = {Time-Optimal Control of the Bi-Steerable Robot: A Case Study in Optimal Control of Nonholonomic Systems}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-75036}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2012}, abstract = {In this thesis, time-optimal control of the bi-steerable robot is addressed. The bi-steerable robot, a vehicle with two independently steerable axles, is a complex nonholonomic system with applications in many areas of land-based robotics. Motion planning and optimal control are challenging tasks for this system, since standard control schemes do not apply. The model of the bi-steerable robot considered here is a reduced kinematic model with the driving velocity and the steering angles of the front and rear axle as inputs. The steering angles of the two axles can be set independently from each other. The reduced kinematic model is a control system with affine and non-affine inputs, as the driving velocity enters the system linearly, whereas the steering angles enter nonlinearly. In this work, a new approach to solve the time-optimal control problem for the bi-steerable robot is presented. In contrast to most standard methods for time-optimal control, our approach does not exclusively rely on discretization and purely numerical methods. Instead, the Pontryagin Maximum Principle is used to characterize candidates for time-optimal solutions. The resultant boundary value problem is solved by optimization to obtain solutions to the path planning problem over a given time horizon. The time horizon is decreased and the path planning is iterated to approximate a time-optimal solution. An optimality condition is introduced which depends on the number of cusps, i.e., reversals of the driving direction of the robot. This optimality condition allows to single out non-optimal solutions with too many cusps. In general, our approach only gives approximations of time-optimal solutions, since only normal regular extremals are considered as solutions to the path planning problem, and the path planning is terminated when an extremal with minimal number of cusps is found. However, for most desired configurations, normal regular extremals with the minimal number of cusps provide time-optimal solutions for the bi-steerable robot. The convergence of the approach is analyzed and its probabilistic completeness is shown. Moreover, simulation results on time-optimal solutions for the bi-steerable robot are presented.}, subject = {Mobiler Roboter}, language = {en} } @article{OPUS4-12812, title = {Time-dependent angular analysis of the decay B\(^0_s\)→J/ψϕ and extraction of ΔΓ\(_s\) and the CP-violating weak phase ϕ\(_s\) by ATLAS}, series = {Journal of High Energy Physics}, volume = {12}, journal = {Journal of High Energy Physics}, number = {072}, organization = {ATLAS Collaboration}, doi = {10.1007/JHEP12(2012)072}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-128125}, year = {2012}, abstract = {A measurement of B\(^0_s\)→J/ψϕ decay parameters, including the CP -violating weak phase ϕ\(_s\) and the decay width difference ΔΓ\(_s\) is reported, using 4.9 fb\(^{-1}\) of integrated luminosity collected in 2011 by the ATLAS detector from LHC pp collisions at a centre-of-mass energy √s=7 TeV. The mean decay width Γ\(_s\) and the transversity amplitudes |A\(_0\)(0)|\(^2\) and |A\(_∥\)(0)|\(^2\) are also measured. The values reported for these parameters are: ϕ\(_s\)=0.22±0.41 (stat.)±0.10 (syst.) rad ΔΓ\(_s\)=0.053±0.021 (stat.)±0.010 (syst.)ps\(^{-1}\) Γ\(_s\)=0.677±0.007 (stat.)±0.004 (syst.) ps\(^{-1}\) |A\(_0\)(0)|\(^2\)=0.528±0.006 (stat.)±0.009 (syst.) |A\(_∥\)(0)|\(^2\)=0.220±0.008 (stat.)±0.007 (syst.) where the values quoted for ϕ\(_s\) and ΔΓ\(_s\) correspond to the solution compatible with the external measurements to which the strong phase δ\(_⊥\) is constrained and where ΔΓ\(_s\) is constrained to be positive. The fraction of S-wave KK or f\(_0\) contamination through the decays B\(^0_s\)→J/ψK\(^+\)K\(^-\)(f\(_0\)) is measured as well and is found to be consistent with zero. Results for ϕ\(_s\) and ΔΓ\(_s\) are also presented as 68\%, 90\% and 95\% likelihood contours, which show agreement with Standard Model expectations.}, language = {en} } @unpublished{Reiss2012, author = {Reiss, Harald}, title = {Time scales and existence of time holes in non-transparent media}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-73554}, year = {2012}, abstract = {The analysis presented in this paper applies to experimental situations where observers or objects to be studied, all at stationary positions, are located in environments the optical thickness of which is strongly different. Non-transparent media comprise thin metallic films, packed or fluidised beds, superconductors, the Earth's crust, and even dark clouds and other cosmological objects. The analysis applies mapping functions that correlate physical events, e, in non-transparent media, with their images, f(e), tentatively located on standard physical time scale. The analysis demonstrates, however, that physical time, in its rigorous sense, does not exist under non-transparency conditions. A proof of this conclusion is attempted in three steps: i) the theorem "there is no time without space and events" is accepted, (ii) images f[e(s,t)] do not constitute a dense, uncountably infinite set, and (iii) sets of images that are not uncountably infinite do not create physical time but only time-like sequences. As a consequence, mapping f[e(s,t)] in non-transparent space does not create physical analogues to the mathematical structure of the ordered, dense half-set R+ of real numbers, and reverse mapping, f-1f[e(s,t)], the mathematical inverse problem, would not allow unique identification and reconstruction of original events from their images. In these cases, causality as well as invariance of physical processes under time reversal, might be violated. An interesting problem is whether temporal cloaking (a time hole) in a transparent medium, as very recently reported in the literature, can be explained by the present analysis. Existence of time holes could perhaps be possible, not in transparent but in non-transparent media, as follows from the sequence of images, f[e(s,t)], that is not uncountably infinite, in contrast to R+. Impacts are expected for understanding physical diffusion-like, radiative transfer processes and stability models to protect superconductors against quenchs. There might be impacts also in relativity, quantum mechanics, nuclear decay, or in systems close to their phase transitions. The analysis is not restricted to objects of laboratory dimensions.}, subject = {Zeitrichtung}, language = {en} } @article{LanghauserHeilerGrudzenskietal.2012, author = {Langhauser, Friederike L. and Heiler, Patrick M. and Grudzenski, Saskia and Lemke, Andreas and Alonso, Angelika and Schad, Lothar R. and Hennerici, Michael G. and Meairs, Stephen and Fata, Marc}, title = {Thromboembolic stroke in C57BL/6 mice monitored by 9.4 T MRI using a 1H cryo probe}, series = {Experimental and Translational Stroke Medicine}, volume = {4}, journal = {Experimental and Translational Stroke Medicine}, number = {18}, doi = {10.1186/2040-7378-4-18}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-124218}, year = {2012}, abstract = {Background A new thromboembolic animal model showed beneficial effects of t-PA with an infarct volume reduction of 36.8\% in swiss mice. Because knock-out animal experiments for stroke frequently used C57BL76 mice we evaluated t-PA effects in this mouse strain and measured infarct volume and vascular recanalisation in-vivo by using high-field 9.4 T MRI and a 1H surface cryo coil. Methods Clot formation was triggered by microinjection of murine thrombin into the right middle cerebral artery (MCA). Animals (n = 28) were treated with 10 mg/kg, 5 mg/kg or no tissue plasminogen activator (t-PA) 40 min after MCA occlusion. For MR-imaging a Bruker 9.4 T animal system with a 1H surface cryo probe was used and a T2-weighted RARE sequence, a diffusion weighted multishot EPI sequence and a 3D flow-compensated gradient echo TOF angiography were performed. Results The infarct volume in animals treated with t-PA was significantly reduced (0.67 ± 1.38 mm3 for 10 mg/kg and 10.9 ± 8.79 mm3 for 5 mg/kg vs. 19.76 ± 2.72 mm3 ; p < 0.001) compared to untreated mice. An additional group was reperfused with t-PA inside the MRI. Already ten minutes after beginning of t-PA treatment, reperfusion flow was re-established in the right MCA. However, signal intensity was lower than in the contralateral MCA. This reduction in cerebral blood flow was attenuated during the first 60 minutes after reperfusion. 24 h after MCA occlusion and reperfusion, no difference in signal intensity of the contralateral and ipsilateral MCAs was observed. Conclusions We confirm a t-Pa effect using this stroke model in the C57BL76 mouse strain and demonstrate a chronological sequence MRI imaging after t-PA using a 1H surface cryo coil in a 9.4 T MRI. This setting will allow testing of new thrombolytic strategies for stroke treatment in-vivo in C57BL76 knock-out mice.}, language = {en} } @article{NanguneriFlottmannHorstmannetal.2012, author = {Nanguneri, Siddharth and Flottmann, Benjamin and Horstmann, Heinz and Heilemann, Mike and Kuner, Thomas}, title = {Three-Dimensional, Tomographic Super-Resolution Fluorescence Imaging of Serially Sectioned Thick Samples}, series = {PLoS One}, volume = {7}, journal = {PLoS One}, number = {5}, doi = {10.1371/journal.pone.0038098}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-134434}, pages = {e38098}, year = {2012}, abstract = {Three-dimensional fluorescence imaging of thick tissue samples with near-molecular resolution remains a fundamental challenge in the life sciences. To tackle this, we developed tomoSTORM, an approach combining single-molecule localization-based super-resolution microscopy with array tomography of structurally intact brain tissue. Consecutive sections organized in a ribbon were serially imaged with a lateral resolution of 28 nm and an axial resolution of 40 nm in tissue volumes of up to 50 \(\mu\)mx50\(\mu\)mx2.5\(\mu\)m. Using targeted expression of membrane bound (m)GFP and immunohistochemistry at the calyx of Held, a model synapse for central glutamatergic neurotransmission, we delineated the course of the membrane and fine-structure of mitochondria. This method allows multiplexed super-resolution imaging in large tissue volumes with a resolution three orders of magnitude better than confocal microscopy.}, language = {en} } @article{AsoHerbOguetaetal.2012, author = {Aso, Yoshinori and Herb, Andrea and Ogueta, Maite and Siwanowicz, Igor and Templier, Thomas and Friedrich, Anja B. and Ito, Kei and Scholz, Henrike and Tanimoto, Hiromu}, title = {Three Dopamine Pathways Induce Aversive Odor Memories with Different Stability}, series = {PLoS Genetics}, volume = {8}, journal = {PLoS Genetics}, number = {7}, doi = {10.1371/journal.pgen.1002768}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-130631}, pages = {e1002768}, year = {2012}, abstract = {Animals acquire predictive values of sensory stimuli through reinforcement. In the brain of Drosophila melanogaster, activation of two types of dopamine neurons in the PAM and PPL1 clusters has been shown to induce aversive odor memory. Here, we identified the third cell type and characterized aversive memories induced by these dopamine neurons. These three dopamine pathways all project to the mushroom body but terminate in the spatially segregated subdomains. To understand the functional difference of these dopamine pathways in electric shock reinforcement, we blocked each one of them during memory acquisition. We found that all three pathways partially contribute to electric shock memory. Notably, the memories mediated by these neurons differed in temporal stability. Furthermore, combinatorial activation of two of these pathways revealed significant interaction of individual memory components rather than their simple summation. These results cast light on a cellular mechanism by which a noxious event induces different dopamine signals to a single brain structure to synthesize an aversive memory.}, language = {en} } @article{YamakawaFukushimaItohetal.2012, author = {Yamakawa, Hisanori and Fukushima, Yoshimasa and Itoh, Shigeru and Heber, Ulrich}, title = {Three different mechanisms of energy dissipation of a desiccation-tolerant moss serve one common purpose: to protect reaction centres against photo-oxidation}, series = {Journal of Experimental Botany}, volume = {63}, journal = {Journal of Experimental Botany}, number = {10}, doi = {10.1093/jxb/ers062}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-126897}, pages = {3765-3775}, year = {2012}, abstract = {Three different types of non-photochemical de-excitation of absorbed light energy protect photosystem II of the sun- and desiccation-tolerant moss Rhytidium rugosum against photo-oxidation. The first mechanism, which is light-induced in hydrated thalli, is sensitive to inhibition by dithiothreitol. It is controlled by the protonation of a thylakoid protein. Other mechanisms are activated by desiccation. One of them permits exciton migration towards a far-red band in the antenna pigments where fast thermal deactivation takes place. This mechanism appears to be similar to a mechanism detected before in desiccated lichens. A third mechanism is based on the reversible photo-accumulation of a radical that acts as a quencher of excitation energy in reaction centres of photosystem II. On the basis of absorption changes around 800 nm, the quencher is suggested to be an oxidized chlorophyll. The data show that desiccated moss is better protected against photo-oxidative damage than hydrated moss. Slow drying of moss thalli in the light increases photo-protection more than slow drying in darkness.}, language = {en} } @phdthesis{Sperling2012, author = {Sperling, Patrik Leonhart}, title = {Thermische Verletzungen im Kindesalter: Eine retrospektive Kohortenstudie von 212 F{\"a}llen}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-74090}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2012}, abstract = {Anhand einer retrospektiven Datenanalyse sollen Verteilungsmuster von Verbrennungen und Verbr{\"u}hungen bezogen auf Alter und Geschlecht untersucht werden. Erfasst wurden 212 Patienten im Alter von 0 bis 16 Jahren betrachtet, die im Zeitraum vom 01.01.2004 bis zum 31.12.2009 auf Grund einer thermischen Verletzung station{\"a}r im Universit{\"a}tsklinikum W{\"u}rzburg der Julius-Maximilians-Universit{\"a}t W{\"u}rzburg behandelt wurden. Den gr{\"o}ßten Anteil thermischer Verletzungen im Kindesalter stellen Verbr{\"u}hungen dar. Betroffen sind vor allem Kleinkinder. Verbrennungen finden sich h{\"a}ufiger bei {\"a}lteren Kindern und Jugendlichen. Jungen sind gef{\"a}hrdeter als M{\"a}dchen solche Verletzungen zu erleiden. Verbr{\"u}hungen treten vermehrt gegen Ende des Jahres auf, w{\"a}hrend Verbrennungen in den Sommermonaten geh{\"a}uft vorkommen. Betroffen ist zumeist die obere K{\"o}rperh{\"a}lfte, wobei Verbr{\"u}hungen meist Brust, Arme und Beine verletzen, Verbrennungen meist Gesicht und H{\"a}nde. II°- und III°-Verletzungen haben die gleiche Altersverteilung und sind gleich h{\"a}ufig. Die durchschnittliche Krankenhausverweildauer ist bei Verbrennungen h{\"o}her als es bei Verbr{\"u}hungen der Fall ist. Nicht jede III°-Verletzung bedarf einer Hauttransplantation.}, subject = {Verbr{\"u}hung}, language = {de} } @phdthesis{Maisch2012, author = {Maisch, Kathrin}, title = {Therapie der Idiopathischen Lungenfibrose}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-79138}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2012}, abstract = {Die idiopathische Lungenfibrose ist eine seltene Form der interstitiellen Lungenerkrankung mit variablem Krankheitsverlauf und schlechter Prognose. Diese Arbeit untersucht den Effekt einer Kombinationstherapie aus Immunsuppressiva (Azathioprin / Cyclophosphamid) und Corticosteroiden auf den Verlauf der Erkrankung, v. a. im Hinblick auf eine m{\"o}gliche Stabilisierung der Lungenfunktion.}, subject = {Lungenfibrose}, language = {de} } @article{Lutz2012, author = {Lutz, Manfred B.}, title = {Therapeutic Potential of Semi-Mature Dendritic Cells for Tolerance Induction}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-75535}, year = {2012}, abstract = {Dendritic cells (DCs) are major players in the control of adaptive tolerance and immunity. Therefore, their specific generation and adoptive transfer into patients or their in vivo targeting is attractive for clinical applications. While injections of mature immunogenic DCs are tested in clinical trials, tolerogenic DCs still are awaiting this step. Besides the tolerogenic potential of immature DCs, also semi-mature DCs can show tolerogenic activity but both types also bear unfavorable features. Optimal tolerogenic DCs, their molecular tool bar, and their use for specific diseases still have to be defined. Here, the usefulness of in vitro generated and adoptively transferred semi-mature DCs for tolerance induction is outlined. The in vivo targeting of semi-mature DCs as represented by steady state migratory DCs are discussed for treatment of autoimmune diseases and allergies. First clinical trials with transcutaneous allergen application may point to their therapeutic use in the future.}, subject = {Medizin}, language = {en} } @article{MeuleKuebler2012, author = {Meule, Adrian and K{\"u}bler, Andrea}, title = {The translation of substance dependence criteria to food-related behaviors: different views and interpretations.}, series = {Frontiers in psychiatry}, journal = {Frontiers in psychiatry}, doi = {10.3389/fpsyt.2012.00064}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-123092}, year = {2012}, abstract = {No abstract available.}, language = {en} } @article{BenischSchillingKleinHitpassetal.2012, author = {Benisch, Peggy and Schilling, Tatjana and Klein-Hitpass, Ludger and Frey, S{\"o}nke P. and Seefried, Lothar and Raaijmakers, Nadja and Krug, Melanie and Regensburger, Martina and Zeck, Sabine and Schinke, Thorsten and Amling, Michael and Ebert, Amling and Jakob, Franz}, title = {The Transcriptional Profile of Mesenchymal Stem Cell Populations in Primary Osteoporosis Is Distinct and Shows Overexpression of Osteogenic Inhibitors}, series = {PLoS One}, volume = {7}, journal = {PLoS One}, number = {9}, doi = {10.1371/journal.pone.0045142}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-133379}, pages = {e45142}, year = {2012}, abstract = {Primary osteoporosis is an age-related disease characterized by an imbalance in bone homeostasis. While the resorptive aspect of the disease has been studied intensely, less is known about the anabolic part of the syndrome or presumptive deficiencies in bone regeneration. Multipotent mesenchymal stem cells (MSC) are the primary source of osteogenic regeneration. In the present study we aimed to unravel whether MSC biology is directly involved in the pathophysiology of the disease and therefore performed microarray analyses of hMSC of elderly patients (79-94 years old) suffering from osteoporosis (hMSC-OP). In comparison to age-matched controls we detected profound changes in the transcriptome in hMSC-OP, e.g. enhanced mRNA expression of known osteoporosis-associated genes (LRP5, RUNX2, COL1A1) and of genes involved in osteoclastogenesis (CSF1, PTH1R), but most notably of genes coding for inhibitors of WNT and BMP signaling, such as Sclerostin and MAB21L2. These candidate genes indicate intrinsic deficiencies in self-renewal and differentiation potential in osteoporotic stem cells. We also compared both hMSC-OP and non-osteoporotic hMSC-old of elderly donors to hMSC of similar to 30 years younger donors and found that the transcriptional changes acquired between the sixth and the ninth decade of life differed widely between osteoporotic and non-osteoporotic stem cells. In addition, we compared the osteoporotic transcriptome to long term-cultivated, senescent hMSC and detected some signs for pre-senescence in hMSC-OP. Our results suggest that in primary osteoporosis the transcriptomes of hMSC populations show distinct signatures and little overlap with non-osteoporotic aging, although we detected some hints for senescence-associated changes. While there are remarkable inter-individual variations as expected for polygenetic diseases, we could identify many susceptibility genes for osteoporosis known from genetic studies. We also found new candidates, e.g. MAB21L2, a novel repressor of BMP-induced transcription. Such transcriptional changes may reflect epigenetic changes, which are part of a specific osteoporosis-associated aging process.}, language = {en} } @article{SpiveyDeGiorgiZhaoetal.2012, author = {Spivey, Tara L. and De Giorgi, Valeria and Zhao, Yingdong and Bedognetti, Davide and Pos, Zoltan and Liu, Qiuzhen and Tomei, Sara and Ascierto, Maria Libera and Uccellini, Lorenzo and Reinboth, Jennifer and Chouchane, Lotfi and Stroncek, David F. and Wang, Ena and Marincola, Francesco M.}, title = {The stable traits of melanoma genetics: an alternate approach to target discovery}, series = {BMC Genomics}, volume = {13}, journal = {BMC Genomics}, number = {156}, doi = {10.1186/1471-2164-13-156}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-131992}, year = {2012}, abstract = {Background: The weight that gene copy number plays in transcription remains controversial; although in specific cases gene expression correlates with copy number, the relationship cannot be inferred at the global level. We hypothesized that genes steadily expressed by 15 melanoma cell lines (CMs) and their parental tissues (TMs) should be critical for oncogenesis and their expression most frequently influenced by their respective copy number. Results: Functional interpretation of 3,030 transcripts concordantly expressed (Pearson's correlation coefficient p-value < 0.05) by CMs and TMs confirmed an enrichment of functions crucial to oncogenesis. Among them, 968 were expressed according to the transcriptional efficiency predicted by copy number analysis (Pearson's correlation coefficient p-value < 0.05). We named these genes, "genomic delegates" as they represent at the transcriptional level the genetic footprint of individual cancers. We then tested whether the genes could categorize 112 melanoma metastases. Two divergent phenotypes were observed: one with prevalent expression of cancer testis antigens, enhanced cyclin activity, WNT signaling, and a Th17 immune phenotype (Class A). This phenotype expressed, therefore, transcripts previously associated to more aggressive cancer. The second class (B) prevalently expressed genes associated with melanoma signaling including MITF, melanoma differentiation antigens, and displayed a Th1 immune phenotype associated with better prognosis and likelihood to respond to immunotherapy. An intermediate third class (C) was further identified. The three phenotypes were confirmed by unsupervised principal component analysis. Conclusions: This study suggests that clinically relevant phenotypes of melanoma can be retraced to stable oncogenic properties of cancer cells linked to their genetic back bone, and offers a roadmap for uncovering novel targets for tailored anti-cancer therapy.}, language = {en} } @article{HuserRohwedderApostolopoulouetal.2012, author = {Huser, Annina and Rohwedder, Astrid and Apostolopoulou, Anthi A. and Widmann, Annekathrin and Pfitzenmaier, Johanna E. and Maiolo, Elena M. and Selcho, Mareike and Pauls, Dennis and von Essen, Alina and Gupta, Tript and Sprecher, Simon G. and Birman, Serge and Riemensperger, Thomas and Stocker, Reinhard F. and Thum, Andreas S.}, title = {The Serotonergic Central Nervous System of the Drosophila Larva: Anatomy and Behavioral Function}, series = {PLoS One}, volume = {7}, journal = {PLoS One}, number = {10}, doi = {10.1371/journal.pone.0047518}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-130437}, pages = {e47518}, year = {2012}, abstract = {The Drosophila larva has turned into a particularly simple model system for studying the neuronal basis of innate behaviors and higher brain functions. Neuronal networks involved in olfaction, gustation, vision and learning and memory have been described during the last decade, often up to the single-cell level. Thus, most of these sensory networks are substantially defined, from the sensory level up to third-order neurons. This is especially true for the olfactory system of the larva. Given the wealth of genetic tools in Drosophila it is now possible to address the question how modulatory systems interfere with sensory systems and affect learning and memory. Here we focus on the serotonergic system that was shown to be involved in mammalian and insect sensory perception as well as learning and memory. Larval studies suggested that the serotonergic system is involved in the modulation of olfaction, feeding, vision and heart rate regulation. In a dual anatomical and behavioral approach we describe the basic anatomy of the larval serotonergic system, down to the single-cell level. In parallel, by expressing apoptosis-inducing genes during embryonic and larval development, we ablate most of the serotonergic neurons within the larval central nervous system. When testing these animals for naive odor, sugar, salt and light perception, no profound phenotype was detectable; even appetitive and aversive learning was normal. Our results provide the first comprehensive description of the neuronal network of the larval serotonergic system. Moreover, they suggest that serotonin per se is not necessary for any of the behaviors tested. However, our data do not exclude that this system may modulate or fine-tune a wide set of behaviors, similar to its reported function in other insect species or in mammals. Based on our observations and the availability of a wide variety of genetic tools, this issue can now be addressed.}, language = {en} } @article{BandyraSaidPfeifferetal.2012, author = {Bandyra, Katarzyna J. and Said, Nelly and Pfeiffer, Verena and G{\´o}rna, Maria W. and Vogel, J{\"o}rg and Luisi, Ben F.}, title = {The Seed Region of a Small RNA Drives the Controlled Destruction of the Target mRNA by the Endoribonuclease RNase E}, series = {Molecular Cell}, volume = {47}, journal = {Molecular Cell}, number = {6}, doi = {10.1016/j.molcel.2012.07.015}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-126202}, pages = {943-953}, year = {2012}, abstract = {Numerous small non-coding RNAs (sRNAs) in bacteria modulate rates of translation initiation and degradation of target mRNAs, which they recognize through base-pairing facilitated by the RNA chaperone Hfq. Recent evidence indicates that the ternary complex of Hfq, sRNA and mRNA guides endoribonuclease RNase E to initiate turnover of both the RNAs. We show that a sRNA not only guides RNase E to a defined site in a target RNA, but also allosterically activates the enzyme by presenting a monophosphate group at the 5′-end of the cognate-pairing "seed." Moreover, in the absence of the target the 5′-monophosphate makes the sRNA seed region vulnerable to an attack by RNase E against which Hfq confers no protection. These results suggest that the chemical signature and pairing status of the sRNA seed region may help to both 'proofread' recognition and activate mRNA cleavage, as part of a dynamic process involving cooperation of RNA, Hfq and RNase E.}, language = {en} } @phdthesis{Staykov2012, author = {Staykov, Nikola}, title = {The Role of the GABPα/β Transcription Factor In the Proliferation of NIH-3T3 Cells}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-67655}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2012}, abstract = {SUMMARY GABP is a heterodymeric member of Ets-family transcription factors. It consists of two subunits - GABPa which contains DNA binding domain and GABPb, which provides transcriptional activation domain and nuclear localization signal. GABPa/b complex is essential for transcriptional activation of multiple lineage-restricted and housekeeping genes, several viral genes, and in some cases might function as transcriptional repressor. Large variety of data indicates involvement of GABP in the complex regulation of cell growth, specified by quiescence, stimulation/proliferation, apoptosis and senescence. Expression level of GABPa subunit is rapidly increased when resting cells enter S-phase, and GABPa/b complex is critical to promote the continuity of the cell cycle. Conditional inactivation of GABPa expression in mouse embryonic fibroblasts results in a complete block of proliferation and acquisition of senescence-like phenotype. However, the influence of GABP on the other cell growth determinant - the apoptosis - remains largely obscure. Therefore we aimed to investigate the influence of GABPa/b expression level on the cell growth in vitro. Using siRNA approach we achieved efficient but only transient down-regulation of GABPa expression which precluded further cell growth studies. Persistent increase of the expression of GABPb subunit only resulted in a positive effect on the cell growth speed. Simultaneous conditional overexpression of both GABPa and GABPb subunits though, strongly reduced the growth of the affected cell cultures in reversible and in expression level dependent manner. Interestingly, GABPa/b overexpressing cells did show neither cell cycle arrest nor massive induction of apoptosis. However, more detailed analyses revealed that dampened apoptotic processes were taking place in GABPa/b-overexpressing cells, starting with a prominent activation of caspase-12. Interestingly, activation of downstream effector caspases was rather suppressed explaining a weak increase of apoptotic cells in GABPa/b overexpressing cultures. This effect suggests that the activation of caspase-12 by elevated amounts of exogenous GABPa/b reflects the normal physiological mechanism of caspase-12 regulation.}, subject = {Proliferation}, language = {en} } @phdthesis{Gupta2012, author = {Gupta, Shuchi}, title = {The role of the Canonical transient receptor potential 6 (TRPC6) channel and the C terminal LIM domain protein of 36 kDa (CLP36) for platelet function}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-72262}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2012}, abstract = {Platelet activation and aggregation are essential to limit posttraumatic blood loss at sites of vascular injury, but also contribute to arterial thrombosis, leading to myocardial infarction and stroke. Thrombus formation is the result of well-defined molecular events, including agonist-induced elevation of intracellular calcium ([Ca2+]i) and series of cytoskeletal rearrangements. With the help of genetically modified mice, the work presented in this thesis identified novel mechanisms underlying the process of platelet activation in hemostasis and thrombosis. Store-operated calcium entry (SOCE) through Orai1 was previously shown to be the main Ca2+ influx pathway in murine platelets. The residual Ca2+ entry in the Orai1 deficient platelets suggested a role for additional non-store-operated Ca2+ (non-SOC) and receptor operated Ca2+ entry (ROCE) in maintaining platelet calcium homeostasis. Canonical transient receptor potential channel 6 (TRPC6), which is expressed in both human and murine platelets, has been attributed to be involved in SOCE as well as in diacylglycerol (DAG)-triggered ROCE. In the first part of the study, the function of TRPC6 in platelet Ca2+ signaling and activation was analyzed by using the TRPC6 knockout mice. In vitro agonist induced Ca2+ responses and in vivo platelet function were unaltered in Trpc6-/- mice. However, Trpc6-/- mice displayed a completely abolished DAG mediated Ca2+-influx but a normal SOCE. These findings identified TRPC6 as the major DAG operated ROC channel in murine platelets, but DAG mediated ROCE has no major functional relevance for hemostasis and thrombosis. In the second part of the thesis, the involvement of the PDLIM family member CLP36 in the signaling pathway of the major platelet collagen receptor glycoprotein (GP) VI was investigated. The GPVI/FcR-chain complex initiates platelet activation through a series of tyrosine phosphorylation events downstream of the FcR-chain-associated immunoreceptor tyrosine-based activation motif (ITAM). GPVI signaling has to be tightly regulated to prevent uncontrolled intravascular platelet activation, but the underlying mechanisms are not fully understood. The present study reports the adaptor protein CLP36 as a major inhibitor of GPVI-ITAM signaling in platelets. Platelets from mice expressing a truncated form of CLP36, (Clp36ΔLIM) and platelets from mice lacking the entire protein (Clp36-/-) displayed profound hyper-activation in response to GPVI-specific agonists, whereas GPCR signaling pathways remained unaffected. These alterations translated into accelerated thrombus formation and enhanced pro-coagulant activity of Clp36ΔLIM platelets and a pro-thrombotic phenotype in vivo. These studies revealed an unexpected inhibitory function of CLP36 in GPVI-ITAM signaling and established it as a key regulator of arterial thrombosis.}, subject = {Thrombozytenaggregation}, language = {en} } @phdthesis{Hansjakob2012, author = {Hansjakob, Anton}, title = {The role of cuticular waxes in the prepenetration processes of Blumeria graminis f.sp. hordei}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-72840}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2012}, abstract = {Der obligat biotrophe Pilz Blumeria graminis f.sp. hordei gilt als Erreger des Gerstenmehltaus, einer destruktiven Erkrankung der Gerste (Hordeum vulgare). Als Folge des Befalls mit B. graminis f.sp. hordei drohen erhebliche Ernteeinbußen. Das kutikul{\"a}re Wachs von Gerstenbl{\"a}ttern besteht haupts{\"a}chlich aus prim{\"a}ren Alkoholen (80\%), Alkylestern (10\%) sowie aus geringf{\"u}gig vorkommenden Bestandteilen wie Fetts{\"a}uren (2\%), Alkanen (2\%) und Aldehyden (1\%). Der initiale Kontakt der asexuellen und durch die Luft verbreiteten Konidien findet auf der Blattoberfl{\"a}che in einer Umgebung statt, die von den kutikul{\"a}ren Wachsen bestimmt ist, welche Keimung und Differenzierung stimulieren. W{\"a}hrend der Keimungs- und Differenzierungsphase durchlaufen die Konidien eine sequenzielle Morphogenese, die so genannten Pr{\"a}penetrationsprozesse. Dabei bilden die Konidien auf der Pflanzenoberfl{\"a}che zun{\"a}chst einen prim{\"a}ren, kurzen und im weiteren Verlauf einen sekund{\"a}ren, elongierten Keimschlauch aus. Im Anschluss daran schwillt dieser an und wird letztlich zu einem septierten Appressorium differenziert. Mit Hilfe des Appressoriums dringt der Pilz dann in die Epidermiszelle der Wirtspflanze ein und bildet ein initiales Haustorium, das die Ern{\"a}hrung des Pilzes sicherstellt. Um den Einfluss von einzelnen Wachsbestandteilen der Wirtspflanze auf die Pr{\"a}penetrationsprozesse systematisch zu untersuchen wurde ein neues in vitro System auf der Basis von Formvar®-Harz etabliert. Dieses System erm{\"o}glicht die Erzeugung homogener Oberfl{\"a}chen als Substrate f{\"u}r den Pilz, bei denen sowohl die aufgelagerten Mengen als auch die Oberfl{\"a}chenhydrophobizit{\"a}t unabh{\"a}ngig von den getesteten Substanzklassen und Kettenl{\"a}ngen der Molek{\"u}le hochgradig reproduzierbar sind. In diesem System haben langkettige Aldehyde die Keimung und die Differenzierung von B. graminis f.sp. hordei Konidien am wirksamsten induziert, wobei die Raten der Appressorienbildung in Abh{\"a}ngigkeit von der Konzentration und der Kettenl{\"a}nge im Vergleich zu n-Hexacosanal (C26), das sich als am effektivsten zeigte, abnahmen (C22<C28>>C30). Die getesteten gerad- und ungeradzahligen Alkane (C24-C33), Fetts{\"a}uren (C20-C28), Alkylester (C40-C44) und prim{\"a}ren Alkohole (C20-C30) hatten keinen signifikanten Einfluss auf die Keimung und die Appressorienbildung des Pilzes. Der prim{\"a}re Alkohol n-Hexacosanol (C26) stellte hierbei eine Ausnahme dar, da er die Keimung und die Bildung des Appressorium-Keimschlauchs signifikant erh{\"o}hte. Um die Rolle von langkettigen Aldehyden auf einer intakten Pflanzenoberfl{\"a}che in vivo genauer zu untersuchen wurden B. graminis f.sp. hordei Konidien auf Bl{\"a}tter von glossy11 Mutanten der Nicht-Wirtspflanze Mais (Zea mays) inokuliert. Anders als der Wildtyp weisen glossy11 Bl{\"a}tter keine langkettigen Aldehyde auf. Auf glossy11 Bl{\"a}ttern keimten 60\% der B. graminis f.sp. hordei Konidien nicht und nur 10\% der Konidien entwickelten ein reifes Appressorium, was einer dreimal geringeren Rate als auf Wildtyp-Bl{\"a}ttern entspricht. Durch das Bespr{\"u}hen von glossy11 Bl{\"a}tter mit synthetischem n-Hexacosanal oder mit Wachs des Wildtyps wurden die pilzlichen Pr{\"a}penetrationsprozesse wieder vollst{\"a}ndig durchlaufen. Wurden im Gegensatz dazu Bl{\"a}tter des Mais-Wildtyps mit nicht induzierenden n-Alkanen, prim{\"a}ren Alkoholen oder langkettigen Fetts{\"a}uren bespr{\"u}ht, konnte das den Aldehyd-defizienten Ph{\"a}notyp von glossy11 imitieren. W{\"a}hrend der Pr{\"a}penetrationsprozesse wird ein Appressorium gebildet, wobei es sich hierbei um eine neu gebildete Zelle handelt. Die Keimung und die anschließende Morphogenese sind wichtige Schritte in der Etablierung der pilzlichen Infektionsstrukturen. Da diese Prozesse in einigen phytopathogenen Pilzen mit dem Zellzyklus gekoppelt sind wurde untersucht, inwieweit die Pr{\"a}penetrationsprozesse von B. graminis f.sp. hordei mit dem Verlauf des Zellzykluses synchronisiert sind. Hierf{\"u}r wurde eine Methode basierend auf DAPI (4,6-diamidino-2-phenylindole) zur F{\"a}rbung der Zellkerne f{\"u}r fixierte Pr{\"a}parate von B. graminis f.sp. hordei Konidien entwickelt. Mittels eines pharmakologischen Ansatzes war es auf diese Weise erstmals m{\"o}glich die Abh{\"a}ngigkeit der Pr{\"a}penetrationsprozesse von der Mitose in vivo und in vitro zu verfolgen. Sechs Stunden nach der Inokulation trat nach Ausbildung des Appressorium-Keimschlauchs eine Mitose in der einkernigen Konidie auf. Die Hemmung der S-Phase mit Hydroxyharnstoff oder die Hemmung der M-Phase mit Benomyl verhinderten eine Bildung des Appressoriums, nicht aber die Entwicklung des Appressorium-Keimschlauchs. Diese Ergebnisse weisen darauf hin, dass die Mitose und eine abgeschlossene Zytokinese notwendige Voraussetzungen f{\"u}r die Appressoriumsbildung, jedoch nicht f{\"u}r die Morphogenese der Konidie, sind. Als Reaktion auf bestimmte Wachsbestandteile der Wirtspflanze werden pilzliche Gene, die w{\"a}hrend der Pr{\"a}penetrationsprozesse eine wichtige Rolle spielen k{\"o}nnen, differenziell exprimiert. Um solche Gene zu identifizieren wurden cDNA Klonbibliotheken mittels der suppression subtractive hybridization (SSH) 22 Minuten nach der Inokulation erstellt. Das auf Formvar®-Harz basierende in vitro System erm{\"o}glichte die selektive Anreicherung von cDNA Sequenzen aus B. graminis f.sp. hordei Konidien, die auf n-Hexacosanal beschichteten Oberfl{\"a}chen inokuliert wurden. Aus einer Reihe von Kandidaten wurde eine cDNA-Sequenz identifiziert, die sowohl auf Gerstenbl{\"a}ttern als auch auf mit n-Hexacosanal oder extrahiertem Gerstenwachs beschichteten Oberfl{\"a}chen hochreguliert war. Mittels 3' und 5' RACE wurde das n-Hexacosanal induzierte Transkript kloniert. Diese cDNA-Sequenz wies keine Homologien zu bekannten Genen, die Funktionen in der pilzlichen Entwicklung und der Ausbildung von Pathogenit{\"a}t in Pflanzen haben, auf.}, subject = {.}, language = {en} } @article{NaseemDandekar2012, author = {Naseem, Muhammad and Dandekar, Thomas}, title = {The Role of Auxin-Cytokinin Antagonism in Plant-Pathogen Interactions}, series = {PLOS Pathogens}, volume = {8}, journal = {PLOS Pathogens}, number = {11}, doi = {10.1371/journal.ppat.1003026}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-131901}, pages = {e1003026}, year = {2012}, abstract = {No abstract available.}, language = {en} } @article{SchubertJoniauGonteroetal.2012, author = {Schubert, Maria and Joniau, Steven and Gontero, Paolo and Kneitz, Susanne and Scholz, Claus-J{\"u}rgen and Kneitz, Burkhard and Briganti, Alberto and Karnes, R. Jeffery and Tombal, Bertrand and Walz, Jochen and Hsu, Chao-Yu and Marchioro, Giansilvio and Bader, Pia and Bangma, Chris and Frohneberg, Detlef and Graefen, Markus and Schr{\"o}der, Fritz and van Cangh, Paul and van Poppel, Hein and Spahn, Martin}, title = {The Role of Adjuvant Hormonal Treatment after Surgery for Localized High-Risk Prostate Cancer: Results of a Matched Multiinstitutional Analysis}, series = {Advances in Urology}, volume = {2012}, journal = {Advances in Urology}, doi = {10.1155/2012/612707}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-137712}, year = {2012}, abstract = {Introduction. To assess the role of adjuvant androgen deprivation therapy (ADT) in high-risk prostate cancer patients (PCa) after surgery. Materials and Methods. The analysis case matched 172 high-risk PCa patients with positive section margins or non-organ confined disease and negative lymph nodes to receive adjuvant ADT (group 1, n=86 ) or no adjuvant ADT (group 2, n=86). Results. Only 11.6\% of the patients died, 2.3\% PCa related. Estimated 5-10-year clinical progression-free survival was 96.9\% (94.3\%) for group 1 and 73.7\% (67.0\%) for group 2, respectively. Subgroup analysis identified men with T2/T3a tumors at low-risk and T3b margins positive disease at higher risk for progression. Conclusion. Patients with T2/T3a tumors are at low-risk for metastatic disease and cancer-related death and do not need adjuvant ADT. We identified men with T3b margin positive disease at highest risk for clinical progression. These patients benefit from immediate adjuvant ADT.}, language = {en} } @article{RhiemEngelGraeseretal.2012, author = {Rhiem, Kerstin and Engel, Christoph and Graeser, Monika and Zachariae, Silke and Kast, Karin and Kiechle, Marion and Ditsch, Nina and Janni, Wolfgang and Mundhenke, Christoph and Golatta, Michael and Varga, Dominic and Preisler-Adams, Sabine and Heinrich, Tilman and Bick, Ulrich and Gadzicki, Dorothea and Briest, Susanne and Meindl, Alfons and Schmutzler, Rita K.}, title = {The risk of contralateral breast cancer in patients from BRCA1/2 negative high risk families as compared to patients from BRCA1 or BRCA2 positive families: a retrospective cohort study}, series = {Breast Cancer Research}, volume = {14}, journal = {Breast Cancer Research}, number = {6}, doi = {10.1186/bcr3369}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-135715}, year = {2012}, abstract = {Introduction: While it has been reported that the risk of contralateral breast cancer in patients from BRCA1 or BRCA2 positive families is elevated, little is known about contralateral breast cancer risk in patients from high risk families that tested negative for BRCA1/2 mutations. Methods: A retrospective, multicenter cohort study was performed from 1996 to 2011 and comprised 6,235 women with unilateral breast cancer from 6,230 high risk families that had tested positive for BRCA1 (n = 1,154) or BRCA2 (n = 575) mutations or tested negative (n = 4,501). Cumulative contralateral breast cancer risks were calculated using the Kaplan-Meier product-limit method and were compared between groups using the log-rank test. Cox regression analysis was applied to assess the impact of the age at first breast cancer and the familial history stratified by mutation status. Results: The cumulative risk of contralateral breast cancer 25 years after first breast cancer was 44.1\% (95\%CI, 37.6\% to 50.6\%) for patients from BRCA1 positive families, 33.5\% (95\%CI, 22.4\% to 44.7\%) for patients from BRCA2 positive families and 17.2\% (95\%CI, 14.5\% to 19.9\%) for patients from families that tested negative for BRCA1/2 mutations. Younger age at first breast cancer was associated with a higher risk of contralateral breast cancer. For women who had their first breast cancer before the age of 40 years, the cumulative risk of contralateral breast cancer after 25 years was 55.1\% for BRCA1, 38.4\% for BRCA2, and 28.4\% for patients from BRCA1/2 negative families. If the first breast cancer was diagnosed at the age of 50 or later, 25-year cumulative risks were 21.6\% for BRCA1, 15.5\% for BRCA2, and 12.9\% for BRCA1/2 negative families. Conclusions: Contralateral breast cancer risk in patients from high risk families that tested negative for BRCA1/2 mutations is similar to the risk in patients with sporadic breast cancer. Thus, the mutation status should guide decision making for contralateral mastectomy.}, language = {en} } @phdthesis{Schubert2012, author = {Schubert, Lisa}, title = {The Respective Impact of Stimulus Valence and Processing Fluency on Evaluative Judgments in Stereotype Disconfirmation}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-77426}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2012}, abstract = {Both specific stimulus valence and unspecific processing dynamics can influence evaluative responses. Eight experiments investigated their respective influence on evaluative judgments in the domain of stereotyping. Valence of stereotypic information and consistency-driven fluency were manipulated in an impression formation paradigm. When information about the to-be-evaluated target person was strongly valenced, no effects of consistency-driven fluency were observed. Higher cognitive processes, valence of inconsistent attributes, processing priority of category information, and impression formation instructions were ruled out as possible factors responsible for the non-occurrence of fluency effects. However, consistency-driven fluency did influence the evaluative judgment, if the information about a target person was not strongly valenced. It is therefore concluded that both stimulus valence and consistency-driven processing fluency play a role in evaluative judgments in the domain of stereotyping. The respective impact of stimulus valence is much stronger than the impact of unspecific processing dynamics, however. Implications for fluency research and the applied field of stereotype change are discussed.}, subject = {Vorurteil}, language = {en} } @article{SpannausHartlWoehrletal.2012, author = {Spannaus, Ralf and Hartl, Maximilian J. and W{\"o}hrl, Birgitta M. and Rethwilm, Axel and Bodem, Jochen}, title = {The prototype foamy virus protease is active independently of the integrase domain}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-75370}, year = {2012}, abstract = {Background: Recently, contradictory results on foamy virus protease activity were published. While our own results indicated that protease activity is regulated by the viral RNA, others suggested that the integrase is involved in the regulation of the protease. Results: To solve this discrepancy we performed additional experiments showing that the protease-reverse transcriptase (PR-RT) exhibits protease activity in vitro and in vivo, which is independent of the integrase domain. In contrast, Pol incorporation, and therefore PR activity in the viral context, is dependent on the integrase domain. To further analyse the regulation of the protease, we incorporated Pol in viruses by expressing a GagPol fusion protein, which supported near wild-type like infectivity. A GagPR-RT fusion, lacking the integrase domain, also resulted in wild-type like Gag processing, indicating that the integrase is dispensable for viral Gag maturation. Furthermore, we demonstrate with a trans-complementation assays that the PR in the context of the PR-RT protein supports in trans both, viral maturation and infectivity. Conclusion: We provide evidence that the FV integrase is required for Pol encapsidation and that the FV PR activity is integrase independent. We show that an active PR can be encapsidated in trans as a GagPR-RT fusion protein.}, subject = {Medizin}, language = {en} } @article{MakoahNigelArndtPradel2012, author = {Makoah Nigel, Animake and Arndt, Hans-Dieter and Pradel, Gabriele}, title = {The proteasome of malaria parasites: A multi-stage drug target for chemotherapeutic intervention?}, series = {International Journal for Parasitology: Drugs and Drug Resistance}, volume = {2}, journal = {International Journal for Parasitology: Drugs and Drug Resistance}, doi = {10.1016/j.ijpddr.2011.12.001}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-137777}, pages = {1-10}, year = {2012}, abstract = {The ubiquitin/proteasome system serves as a regulated protein degradation pathway in eukaryotes, and is involved in many cellular processes featuring high protein turnover rates, such as cell cycle control, stress response and signal transduction. In malaria parasites, protein quality control is potentially important because of the high replication rate and the rapid transformations of the parasite during life cycle progression. The proteasome is the core of the degradation pathway, and is a major proteolytic complex responsible for the degradation and recycling of non-functional ubiquitinated proteins. Annotation of the genome for Plasmodium falciparum, the causative agent of malaria tropica, revealed proteins with similarity to human 26S proteasome subunits. In addition, a bacterial ClpQ/hslV threonine peptidase-like protein was identified. In recent years several independent studies indicated an essential function of the parasite proteasome for the liver, blood and transmission stages. In this review, we compile evidence for protein recycling in Plasmodium parasites and discuss the role of the 26S proteasome as a prospective multi-stage target for antimalarial drug discovery programs.}, language = {en} } @phdthesis{Cook2012, author = {Cook, Mandy}, title = {The neurodegenerative Drosophila melanogaster AMPK mutant loechrig}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-72027}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2012}, abstract = {In dieser Doktorarbeit wird die Drosophila Mutante loechrig (loe), die progressive Degeneration des Nervensystems aufweist, weiter beschrieben. In der loe Mutante fehlt eine neuronale Isoform der γ- Untereinheit der Proteinkinase AMPK (AMP-activated protein kinase). Die heterotrimere AMPK (auch als SNF4Aγ bekannt) kontrolliert das Energieniveau der Zelle, was st{\"a}ndiges Beobachten des ATP/AMP- Verh{\"a}ltnis erfordert. AMPK wird durch niedrige Energiekonzentrationen und Beeintr{\"a}chtigungen im Metabolismus, wie zum Beispiel Sauerstoffmangel, aktiviert und reguliert mehrere wichtige Signaltransduktionswege, die den Zellmetabolismus kontrollieren. Jedoch ist die Rolle von AMPK im neuronalen {\"U}berleben noch unklar. Eines der Proteine, dass von AMPK reguliert wird, ist HMGR (hydroxymethylglutaryl-CoA- reductase), ein Schl{\"u}sselenzym in der Cholesterin- und Isoprenoidsynthese. Es wurde gezeigt, dass wenn die Konzentration von HMGR manipuliert wird, auch der Schweregrad des neurodegenerativen Ph{\"a}notyps in loe beeinflusst wird. Obwohl die regulatorische Rolle von AMPK auf HMGR in Drosophila konserviert ist, k{\"o}nnen Insekten Cholesterin nicht de novo synthetisieren. Dennoch ist der Syntheseweg von Isoprenoiden zwischen Vertebraten und Insekten evolution{\"a}r konserviert. Isoprenylierung von Proteinen, wie zum Beispiel von kleinen G-Proteinen, stellt den Proteinen einen hydophobischen Anker bereit, mit denen sie sich an die Zellmembran binden k{\"o}nnen, was in anschließender Aktivierung resultieren kann. In dieser Doktorarbeit wird gezeigt, dass die loe Mutation die Prenylierung von Rho1 und den LIM-Kinasesignalweg beeinflusst, was eine wichtige Rolle im Umsatz von Aktin und axonalem Auswachsen spielt. Die Ergebnisse weisen darauf hin, dass die Mutation in LOE, Hyperaktivit{\"a}t des Isoprenoidsynthesewegs verursacht, was zur erh{\"o}hten Farnesylierung von Rho1 und einer dementsprechend h{\"o}heren Konzentration von Phospho- Cofilin f{\"u}hrt. Eine Mutation in Rho1 verbessert den neurodegenerativen Ph{\"a}notyp und die Lebenserwartung von loe. Der Anstieg vom inaktiven Cofilin in loe f{\"u}hrt zu einer Zunahme von filament{\"o}sen Aktin. Aktin ist am Auswachen von Neuronen beteiligt und Experimente in denen loe Neurone analysiert wurden, gaben wertvolle Einblicke in eine m{\"o}gliche Rolle die AMPK, und dementsprechend Aktin, im Neuronenwachstum spielt. Des Weiteren wurde demonstriert, dass Neurone, die von der loe Mutante stamen, einen verlangsamten axonalen Transport aufweisen, was darauf hinweist dass Ver{\"a}nderungen, die durch den Einfluss von loe auf den Rho1 Signalweg im Zytoskelettnetzwerk hervorgerufen wurden, zur St{\"o}rung des axonalen Transports und anschließenden neuronalen Tod f{\"u}hren. Es zeigte außerdem, dass Aktin nicht nur am neuronalen Auswachsen beteiligt ist, sondern auch wichtig f{\"u}r die Aufrechterhaltung von Neuronen ist. Das bedeutet, dass {\"A}nderungen der Aktindynamik zur progressiven Degeneration von Neuronen f{\"u}hren kann. Zusammenfassend unterstreichen diese Ergebnisse die wichtige Bedeutung von AMPK in den Funktionen und im {\"U}berleben von Neuronen und er{\"o}ffnen einen neuartigen funktionellen Mechanismus in dem {\"A}nderungen in AMPK neuronale Degeneration hervorrufen kann.}, subject = {Taufliege}, language = {en} } @article{MergetKoetschanHackletal.2012, author = {Merget, Benjamin and Koetschan, Christian and Hackl, Thomas and F{\"o}rster, Frank and Dandekar, Thomas and M{\"u}ller, Tobias and Schultz, J{\"o}rg and Wolf, Matthias}, title = {The ITS2 Database}, series = {Journal of Visual Expression}, volume = {61}, journal = {Journal of Visual Expression}, number = {e3806}, doi = {10.3791/3806}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-124600}, year = {2012}, abstract = {The internal transcribed spacer 2 (ITS2) has been used as a phylogenetic marker for more than two decades. As ITS2 research mainly focused on the very variable ITS2 sequence, it confined this marker to low-level phylogenetics only. However, the combination of the ITS2 sequence and its highly conserved secondary structure improves the phylogenetic resolution1 and allows phylogenetic inference at multiple taxonomic ranks, including species delimitation. The ITS2 Database presents an exhaustive dataset of internal transcribed spacer 2 sequences from NCBI GenBank accurately reannotated. Following an annotation by profile Hidden Markov Models (HMMs), the secondary structure of each sequence is predicted. First, it is tested whether a minimum energy based fold (direct fold) results in a correct, four helix conformation. If this is not the case, the structure is predicted by homology modeling. In homology modeling, an already known secondary structure is transferred to another ITS2 sequence, whose secondary structure was not able to fold correctly in a direct fold. The ITS2 Database is not only a database for storage and retrieval of ITS2 sequence-structures. It also provides several tools to process your own ITS2 sequences, including annotation, structural prediction, motif detection and BLAST search on the combined sequence-structure information. Moreover, it integrates trimmed versions of 4SALE and ProfDistS for multiple sequence-structure alignment calculation and Neighbor Joining tree reconstruction. Together they form a coherent analysis pipeline from an initial set of sequences to a phylogeny based on sequence and secondary structure. In a nutshell, this workbench simplifies first phylogenetic analyses to only a few mouse-clicks, while additionally providing tools and data for comprehensive large-scale analyses.}, language = {en} } @article{IsaiasVolkmannMarzeganetal.2012, author = {Isaias, Ioannis U. and Volkmann, Jens and Marzegan, Alberto and Marotta, Giorgio and Cavallari, Paolo and Pezzoli, Gianni}, title = {The Influence of Dopaminergic Striatal Innervation on Upper Limb Locomotor Synergies}, series = {PLoS One}, volume = {7}, journal = {PLoS One}, number = {12}, doi = {10.1371/journal.pone.0051464}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-133976}, pages = {e51464}, year = {2012}, abstract = {To determine the role of striatal dopaminergic innervation on upper limb synergies during walking, we measured arm kinematics in 13 subjects with Parkinson disease. Patients were recruited according to several inclusion criteria to represent the best possible in vivo model of dopaminergic denervation. Of relevance, we included only subjects with normal spatio-temporal parameters of the stride and gait speed to avoid an impairment of upper limbs locomotor synergies as a consequence of gait impairment per se. Dopaminergic innervation of the striatum was measured by FP-CIT and SPECT. All patients showed a reduction of gait-associated arms movement. No linear correlation was found between arm ROM reduction and contralateral dopaminergic putaminal innervation loss. Still, a partition analysis revealed a 80\% chance of reduced arm ROM when putaminal dopamine content loss was >47\%. A significant correlation was described between the asymmetry indices of the swinging of the two arms and dopaminergic striatal innervation. When arm ROM was reduced, we found a positive correlation between upper-lower limb phase shift modulation ( at different gait velocities) and striatal dopaminergic innervation. These findings are preliminary evidence that dopaminergic striatal tone plays a modulatory role in upper-limb locomotor synergies and upper-lower limb coupling while walking at different velocities.}, language = {en} } @phdthesis{Schmidt2012, author = {Schmidt, Gerald}, title = {The Influence of Anticipation and Warnings on Collision Avoidance Behavior of Attentive Drivers}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-73789}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2012}, abstract = {This thesis deals with collision avoidance. Focus is on the question of under which conditions collision avoidance works well for humans and if drivers can be supported by a Forward Collision Warning (FCW) System when they do not react appropriately. Forward Collision Warning systems work in a way that tries to focus the driver's attention in the direction of the hazard and evoke an avoidance reaction by some sort of alert (e.g., tone or light). Research on these warning systems generally focuses on inattention and distraction as the cause for crashes. If the driver is inattentive, the results of a crash are thought to be worse as the driver's reaction is belated or might not mitigate the crash at all. To ensure effectiveness in the worst case, most of the experiments studying FCW systems have been conducted with visually distracted drivers. Research on the cause and possible countermeasures for crashes of attentive drivers are hardly available, although crash databases and field operational test data show that 40-60\% of the drivers look at the forward scene shortly before they crash. Hence, only a few studies elaborated on ideas about the reasons for crashes with attentive drivers. On the basis of the literature, it is worked out that one reason for delayed avoidance behavior can be an incorrect allocation of attention. It is further elaborated that high level attention processes are strongly influenced by interpretation of the situation and the anticipation of future status. Therefore, it is hypothesized that alert drivers react later when they can not foresee a potential threat or even when they misinterpret the situation. If the lack of threat anticipation or incorrect anticipation is a reason for crashes, a FCW system could be a great help, when the FCW is easily comprehensible. It is hypothesized that a FCW can compensate for missing threat anticipation in the driver. The results of the experiments show that the level of threat anticipation has the largest influence on driver behavior in an imminent crash situation. The results further suggest that FCW systems - especially warnings of audible or haptic modality - can help attentive drivers who do not anticipate a threat or misinterpret a situation. The negative influence of missing or mislead threat anticipation on objective measures was small when the threat appeared suddenly. This is thought to be due to the visual appearance of the introduced threat. It is assumed that this type of stimulus triggers a lower level attentional process, as opposed to a top-down attention process controlled by an anticipatory process. In the other scenario types such a lower level process may not be triggered. An important result of the second study is that (Forward) Collision Warnings have to be learned. Participants with warnings reacted slower than participants without any FCW in the first critical event. Participants with a visual warning reacted particularly slow. Later in the experiment, the probands with warnings were constantly faster than their counterparts without them. Hence, the results of this study suggest that a haptic or audible modality should be used as a primary warning to the driver. The characteristic of visual warnings to draw the visual attention is both a blessing and a curse. It is suggested to use the visual warning component for only a short period of time to attract the driver's attention to the forward scene, but then end the display to not further distract him. Car manufacturers try to avoid as many unnecessary alarms as possible. If driver monitoring would be available, it is often planned to suppress warnings when the driver is looking through the windshield. The results suggest not to do so. If a driver reaches a critical situation represented by a low Time-to-collision (TTC) or a high need to decelerate, he should always get a warning, unless he is already braking or steering. The most important arguments for this are: - Looking at the street does not mean that the driver has the correct situational awareness. - The driver has to learn the meaning of the warning. - The driver will not be annoyed by a warning when the situation is considered critical.}, subject = {Zusammenstoss}, language = {en} } @article{ErmertFinkMorseetal.2012, author = {Ermert, Volker and Fink, Andreas H. and Morse, Andrew P. and Paeth, Heiko}, title = {The Impact of Regional Climate Change on Malaria Risk due to Greenhouse Forcing and Land-Use Changes in Tropical Africa}, series = {Environmental Health Perspectives}, volume = {120}, journal = {Environmental Health Perspectives}, number = {1}, doi = {10.1289/ehp.1103681}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-135562}, pages = {77-84}, year = {2012}, abstract = {BACKGROUND: Climate change will probably alter the spread and transmission intensity of malaria in Africa. OBJECTIVES: In this study, we assessed potential changes in the malaria transmission via an integrated weather disease model. METHODS: We simulated mosquito biting rates using the Liverpool Malaria Model (LMM). The input data for the LMM were bias-corrected temperature and precipitation data from the regional model (REMO) on a 0.5 degrees latitude longitude grid. A Plasmodium falciparum infection model expands the LMM simulations to incorporate information on the infection rate among children. Malaria projections were carried out with this integrated weather disease model for 2001 to 2050 according to two climate scenarios that include the effect of anthropogenic land-use and land-cover changes on climate. RESULTS: Model-based estimates for the present climate (1960 to 2000) are consistent with observed data for the spread of malaria in Africa. In the model domain, the regions where malaria is epidemic are located in the Sahel as well as in various highland territories. A decreased spread of malaria over most parts of tropical Africa is projected because of simulated increased surface temperatures and a significant reduction in annual rainfall. However, the likelihood of malaria epidemics is projected to increase in the southern part of the Sahel. In most of East Africa, the intensity of malaria transmission is expected to increase. Projections indicate that highland areas that were formerly unsuitable for malaria will become epidemic, whereas in the lower-altitude regions of the East African highlands, epidemic risk will decrease. CONCLUSIONS: We project that climate changes driven by greenhouse-gas and land-use changes will significantly affect the spread of malaria in tropical Africa well before 2050. The geographic distribution of areas where malaria is epidemic might have to be significantly altered in the coming decades.}, language = {en} } @phdthesis{Seida2012, author = {Seida, Ahmed Adel}, title = {The Immunomodulatory Role of Endogenous Glucocorticoids in Ovarian Cancer}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-73901}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2012}, abstract = {Ovarian cancer currently causes ~6,000 deaths per year in Germany alone. Since only palliative treatment is available for ovarian carcinomas that have developed resistance against platinum-based chemotherapy and paclitaxel, there is a pressing medical need for the development of new therapeutic approaches. As survival is strongly influenced by immunological parameters, immunotherapeutic strategies appear promising. The research of our group thus aims at overcoming tumour immune escape by counteracting immunosuppressive mechanisms in the tumour microenvironment. In this context, we found that tumour-infiltrating myeloid-derived suppressor cells (MDSC) or tumour associated macrophages (TAM) which are abundant in ovarian cancer express high levels of the enzyme 11β-hydroxysteroid dehydrogenase1 (11-HSD1). This oxido-reductase enzyme is essential for the conversion of biologically inactive cortisone into active cortisol. In line with this observation, high endogenous cortisol levels could be detected in serum, ascitic fluid and tumour exudates from ovarian cancer patients. Considering that cortisol exerts strong anti-inflammatory and immunosuppressive effects on immune cells, it appears likely that high endogenous cortisol levels contribute to immune escape in ovarian cancer. We thus hypothesised that local activation of endogenous glucocorticoids could suppress beneficial immune responses in the tumour microenvironment and thereby prevent a successful immunotherapy. To investigate the in vivo relevance of this postulated immune escape mechanism, irradiated PTENloxP/loxP loxP-Stop-loxP-krasG12D mice were reconstituted with hematopoietic stem cells from either glucocorticoid receptor (GR) expressing mice (GRloxP/loxP) or from mice with a T cell-specific glucocorticoid receptor knock-out (lck-Cre GRloxP/loxP) mice. In the host mice, the combination of a conditional PTEN knock-out with a latent oncogenic kras leads to tumour development when a Cre-encoding adenovirus is injected into the ovarian bursa. Using this model, mice that had been reconstituted with GC-insensitive T cells showed better intratumoural T cell infiltration than control mice that had received functionally unaltered GRloxP/loxP cells via adoptive transfer. However, tumour-infiltrating T cells mostly assumed a Foxp3+ (regulatory) phenotype and survival was even shortened in mice with cortisol-insensitive T cells. Thus, endogenous cortisol seems to inhibit immune cell infiltration in ovarian cancer, but productive anti-tumour immune responses might still be prevented by further factors from the tumour microenvironment. Thus, our data did not provide a sufficiently strong rationale to further pursue the antagonisation of glucocorticoid signalling in ovarian cancer patients, Moreover, glucocorticoids are frequently administered to cancer patients to reduce inflammation and swelling and to prevent chemotherapy-related toxic side effects like nausea or hypersensitivity reactions associated with paclitaxel therapy. Thus, we decided to address the question whether specific signalling pathways in innate immune cells, preferentially in NK cells, could still be activated even in the presence of GC. A careful investigation of the various activating NK cell receptors (i.e. NKp30, NKp44, NKp46), DNAM-1 and NKG2D) was thus performed which revealed that NKp30, NKp44 and NKG2D are all down-regulated by cortisol whereas NKp46 is actually induced by cortisol. Interestingly, NKp46 is the only known receptor that is strictly confined to NK cells. Its activation via crosslinking leads to cytokine release and activation of cytotoxic activity. Stimulation of NK cells via NKp46 may contribute to immune-mediated tumour destruction by triggering the lysis of tumour cells and by altering the cytokine pattern in the tumour microenvironment, thereby generating more favourable conditions for the recruitment of antigen-specific immune cells. Accordingly, our observation that even cortisol-treated NK cells can still be activated via NKp46 and CD2 might become valuable for the design of immunotherapies that can still be applied in the presence of endogenous or therapeutically administered glucocorticoids.}, subject = {Cortison}, language = {en} } @article{JaschkeChungHesseetal.2012, author = {Jaschke, Alexander and Chung, Bomee and Hesse, Deike and Kluge, Reinhart and Zahn, Claudia and Moser, Markus and Petzke, Klaus-J{\"u}rgen and Brigelius-Floh{\´e}, Regina and Puchkov, Dmytro and Koepsell, Hermann and Heeren, Joerg and Joost, Hans-Georg and Sch{\"u}rmann, Annette}, title = {The GTPase ARFRP1 controls the lipidation of chylomicrons in the Golgi of the intestinal epithelium}, series = {Human Molecular Genetics}, volume = {21}, journal = {Human Molecular Genetics}, number = {14}, doi = {10.1093/hmg/dds140}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-125658}, pages = {3128-3142}, year = {2012}, abstract = {The uptake and processing of dietary lipids by the small intestine is a multistep process that involves several steps including vesicular and protein transport. The GTPase ADP-ribosylation factor-related protein 1 (ARFRP1) controls the ARF-like 1 (ARL1)-mediated Golgi recruitment of GRIP domain proteins which in turn bind several Rab-GTPases. Here, we describe the essential role of ARFRP1 and its interaction with Rab2 in the assembly and lipidation of chylomicrons in the intestinal epithelium. Mice lacking Arfrp1 specifically in the intestine \((Arfrp1^{vil-/-})\) exhibit an early post-natal growth retardation with reduced plasma triacylglycerol and free fatty acid concentrations. \(Arfrp1^{vil-/-}\) enterocytes as well as Arfrp1 mRNA depleted Caco-2 cells absorbed fatty acids normally but secreted chylomicrons with a markedly reduced triacylglycerol content. In addition, the release of apolipoprotein A-I (ApoA-I) was dramatically decreased, and ApoA-I accumulated in the \(Arfrp1^{vil-/-}\) epithelium, where it predominantly co-localized with Rab2. The release of chylomicrons from Caco-2 was markedly reduced after the suppression of Rab2, ARL1 and Golgin-245. Thus, the GTPase ARFRP1 and its downstream proteins are required for the lipidation of chylo­microns and the assembly of ApoA-I to these particles in the Golgi of intestinal epithelial cells.}, language = {en} } @article{FrankeFaraoneAshersonetal.2012, author = {Franke, B. and Faraone, S. V. and Asherson, P. and Buitelaar, J. and Bau, C. H. D. and Ramos-Quiroga, J. A. and Mick, E. and Grevet, E. H. and Johansson, S. and Haavik, J. and Lesch, K.-P. and Cormand, B. and Reif, A.}, title = {The genetics of attention deficit/hyperactivity disorder in adults, a review}, series = {Molecular Psychiatry}, volume = {17}, journal = {Molecular Psychiatry}, doi = {10.1038/mp.2011.138}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-124677}, pages = {960-987}, year = {2012}, abstract = {The adult form of attention deficit/hyperactivity disorder (aADHD) has a prevalence of up to 5\% and is the most severe long-term outcome of this common neurodevelopmental disorder. Family studies in clinical samples suggest an increased familial liability for aADHD compared with childhood ADHD (cADHD), whereas twin studies based on self-rated symptoms in adult population samples show moderate heritability estimates of 30-40\%. However, using multiple sources of information, the heritability of clinically diagnosed aADHD and cADHD is very similar. Results of candidate gene as well as genome-wide molecular genetic studies in aADHD samples implicate some of the same genes involved in ADHD in children, although in some cases different alleles and different genes may be responsible for adult versus childhood ADHD. Linkage studies have been successful in identifying loci for aADHD and led to the identification of LPHN3 and CDH13 as novel genes associated with ADHD across the lifespan. In addition, studies of rare genetic variants have identified probable causative mutations for aADHD. Use of endophenotypes based on neuropsychology and neuroimaging, as well as next-generation genome analysis and improved statistical and bioinformatic analysis methods hold the promise of identifying additional genetic variants involved in disease etiology. Large, international collaborations have paved the way for well-powered studies. Progress in identifying aADHD risk genes may provide us with tools for the prediction of disease progression in the clinic and better treatment, and ultimately may help to prevent persistence of ADHD into adulthood.}, language = {en} } @phdthesis{Koetschan2012, author = {Koetschan, Christian}, title = {The Eukaryotic ITS2 Database - A workbench for modelling RNA sequence-structure evolution}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-73128}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2012}, abstract = {In den vergangenen Jahren etablierte sich der Marker „internal transcribed spacer 2" (ITS2) zu einem h{\"a}ufig genutzten Werkzeug in der molekularen Phylogenetik der Eukaryoten. Seine schnell evolvierende Sequenz eignet sich bestens f{\"u}r den Einsatz in niedrigeren phylogenetischen Ebenen. Die ITS2 faltet jedoch auch in eine sehr konservierte Sekund{\"a}rstruktur. Diese erm{\"o}glicht die Unterscheidung weit entfernter Arten. Eine Kombination aus beiden in einer Sequenzstrukturanalyse verbessert die Aufl{\"o}sung des Markers und erm{\"o}glicht die Rekonstruktion von robusteren B{\"a}umen auf h{\"o}herer taxonomischer Breite. Jedoch war die Durchf{\"u}hrung solch einer Analyse, die die Nutzung unterschiedlichster Programme und Datenbanken vorraussetzte, f{\"u}r den klassischen Biologen nicht einfach durchf{\"u}hrbar. Um diese H{\"u}rde zu umgehen, habe ich den „ITS2 Workbench" entwickelt, eine im Internet nutzbare Arbeitsplattform zur automatisierten sequenzstrukturbasierten phylogenetischen Analyse basierend auf der ITS2 (http://its2.bioapps.biozentrum.uni-wuerzburg.de). Die Entwicklung begann mit der L{\"a}ngenoptimierung unterschiedlicher „Hidden Markov Model" (HMM)-Topologien, die erfolgreich auf ein Modell zur Sequenzstrukturvorhersage der ITS2 angewandt wurden. Hierbei wird durch die Analyse von Sequenzbestandteilen in Kombination mit der L{\"a}ngenverteilung verschiedener Helixregionen die Struktur vorhergesagt. Anschließend konnte ich HMMs auch bei der Sequenzstrukturgenerierung einsetzen um die ITS2 innerhalb einer gegebenen Sequenz zu lokalisieren. Dieses neu implementierte Verfahren verdoppelte die Anzahl vorhergesagter Strukturen und verk{\"u}rzte die Laufzeit auf wenige Tage. Zusammen mit weiteren Optimierungen des Homologiemodellierungsprozesses kann ich nun ersch{\"o}pfend Sekund{\"a}rstrukturen in mehreren Interationen vorhersagen. Diese Optimierungen liefern derzeit 380.000 annotierte Sequenzen einschließlich 288.000 Strukturvorhersagen. Um diese Strukturen f{\"u}r die Berechnung von Alignments und phylogenetischen B{\"a}umen zu verwenden hab ich das R-Paket „treeforge" entwickelt. Es erm{\"o}glicht die Generierung von Sequenzstrukturalignments auf bis zu vier unterschiedlich kodierten Alphabeten. Damit k{\"o}nnen erstmals auch strukturelle Basenpaarungen in die Alignmentberechnung mit einbezogen werden, die eine Sch{\"a}tzung neuer Scorematrizen vorraussetzten. Das R-Paket erm{\"o}glicht zus{\"a}tzlich die Rekonstruktion von „Maximum Parsimony", „Maximum Likelihood" und „Neighbour Joining" B{\"a}umen auf allen vier Alphabeten mittels weniger Zeilen Programmcode. Das Paket wurde eingesetzt, um die noch umstrittene Phylogenie der „chlorophyceae" zu rekonstruieren und k{\"o}nnte in zuk{\"u}nftigen Versionen des ITS2 workbench verwendet werden. Die ITS2 Plattform basiert auf einer modernen und sehr umfangreichen Web 2.0 Oberfl{\"a}che und beinhaltet neuste AJAX und Web-Service Technologien. Sie umfasst die HMM basierte Sequenzannotation, Strukturvorhersage durch Energieminimierung bzw. Homologiemodellierung, Alignmentberechnung und Baumrekonstruktion basierend auf einem flexiblen Datenpool, der {\"A}nderungen am Datensatz automatisch aktualisiert. Zus{\"a}tzlich wird eine Detektion von Sequenzmotiven erm{\"o}glicht, die zur Kontrolle von Annotation und Strukturvorhersage dienen kann. Eine BLAST basierte Suche auf Sequenz- und Strukturebene bietet zus{\"a}tzlich eine Vereinfachung des Taxonsamplings. Alle Funktionen sowie die Nutzung der ITS2 Webseite sind in einer kurzen Videoanleitung dargestellt. Die Plattform l{\"a}sst jedoch nur eine bestimmte Gr{\"o}ße von Datens{\"a}tzen zu. Dies liegt vor allem an der erheblichen Rechenleistung, die bei diesen Berechnungen ben{\"o}tigt wird. Um die Funktion dieses Verfahrens auch auf großen Datenmengen zu demonstrieren, wurde eine voll automatisierte Rekonstruktion des Gr{\"u}nalgenbaumes (Chlorophyta) durchgef{\"u}hrt. Diese erfolgreiche, auf dem ITS2 Marker basierende Studie spricht f{\"u}r die Sequenz-Strukturanalyse auf weiteren Daten in der Phylogenetik. Hier bietet der ITS2 Workbench den idealen Ausgangspunkt.}, subject = {Ribosomale RNA}, language = {en} } @phdthesis{Waider2012, author = {Waider, Jonas}, title = {The effects of serotonin deficiency in mice: Focus on the GABAergic system}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-74565}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2012}, abstract = {Based on genetic association and functional imaging studies, reduced function of tryptophan hydroxylase-2 (TPH2) has been shown to be critically involved in the pathophysiology of anxiety-disorders and depression. In order to elucidate the impact of a complete neuronal 5-HT deficiency, mice with a targeted inactivation of the gene encoding Tph2 were generated. Interestingly, survival of Tph2-/- mice, the formation of serotonergic neurons and the pathfinding of their projections was not impaired. Within this thesis, I investigated the influence of 5-HT deficiency on the γ-amino butyric acid (GABA) system. The GABAergic system is implicated in the pathophysiology of anxiety disorders. Therefore, measurement of GABA concentrations in different limbic brain regions was carried out. These measurements were combined with immunohistochemical estimation of GABAergic cell subpopulations in the dorsal hippocampus and amygdala. In Tph2-/- mice GABA concentrations were increased exclusively in the dorsal hippocampus. In heterozygous Tph2+/- mice concentrations of GABA were increased in the amygdala compared to Tph2-/- and wt control mice, while the reverse was found in the prefrontal cortex. The changes in GABA concentrations were accompanied by altered cell density of GABAergic neurons within the basolateral complex of the amygdala and parvalbumin (PV) neurons of the dorsal hippocampus and by adaptational changes of 5-HT receptors. Thus, adaptive changes during the development on the GABA system may reflect altered anxiety-like and depressive-like behavior in adulthood. Moreover, chronic mild stress (CMS) rescues the depressive-like effects induced by 5-HT deficiency. In contrast, 5-HT is important in mediating an increased innate anxiety-like behavior under CMS conditions. This is in line with a proposed dual role of 5-HT acting through different mechanisms on anxiety and depressive-like behavior, which is influenced by gene-environment interaction effects. Further research is needed to disentangle these complex networks in the future.}, subject = {Knockout }, language = {en} } @article{JinAllisonKaufmannetal.2012, author = {Jin, Jing and Allison, Brendan Z. and Kaufmann, Tobias and K{\"u}bler, Andrea and Zhang, Yu and Wang, Xingyu and Cichocki, Andrzej}, title = {The Changing Face of P300 BCIs: A Comparison of Stimulus Changes in a P300 BCI Involving Faces, Emotion, and Movement}, series = {PLoS One}, volume = {7}, journal = {PLoS One}, number = {11}, doi = {10.1371/journal.pone.0049688}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-134173}, pages = {e49688}, year = {2012}, abstract = {Background: One of the most common types of brain-computer interfaces (BCIs) is called a P300 BCI, since it relies on the P300 and other event-related potentials (ERPs). In the canonical P300 BCI approach, items on a monitor flash briefly to elicit the necessary ERPs. Very recent work has shown that this approach may yield lower performance than alternate paradigms in which the items do not flash but instead change in other ways, such as moving, changing colour or changing to characters overlaid with faces. Methodology/Principal Findings: The present study sought to extend this research direction by parametrically comparing different ways to change items in a P300 BCI. Healthy subjects used a P300 BCI across six different conditions. Three conditions were similar to our prior work, providing the first direct comparison of characters flashing, moving, and changing to faces. Three new conditions also explored facial motion and emotional expression. The six conditions were compared across objective measures such as classification accuracy and bit rate as well as subjective measures such as perceived difficulty. In line with recent studies, our results indicated that the character flash condition resulted in the lowest accuracy and bit rate. All four face conditions (mean accuracy >91\%) yielded significantly better performance than the flash condition (mean accuracy = 75\%). Conclusions/Significance: Objective results reaffirmed that the face paradigm is superior to the canonical flash approach that has dominated P300 BCIs for over 20 years. The subjective reports indicated that the conditions that yielded better performance were not considered especially burdensome. Therefore, although further work is needed to identify which face paradigm is best, it is clear that the canonical flash approach should be replaced with a face paradigm when aiming at increasing bit rate. However, the face paradigm has to be further explored with practical applications particularly with locked-in patients.}, language = {en} } @article{RamachandranShearerJacobetal.2012, author = {Ramachandran, Vinoy K. and Shearer, Neil and Jacob, Jobin J. and Sharma, Cynthia M. and Thompson, Arthur}, title = {The architecture and ppGpp-dependent expression of the primary transcriptome of Salmonella Typhimurium during invasion gene expression}, series = {BMC Genomics}, volume = {13}, journal = {BMC Genomics}, number = {25}, doi = {10.1186/1471-2164-13-25}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-130625}, year = {2012}, abstract = {Background: Invasion of intestinal epithelial cells by Salmonella enterica serovar Typhimurium (S. Typhimurium) requires expression of the extracellular virulence gene expression programme (STEX), activation of which is dependent on the signalling molecule guanosine tetraphosphate (ppGpp). Recently, next-generation transcriptomics (RNA-seq) has revealed the unexpected complexity of bacterial transcriptomes and in this report we use differential RNA sequencing (dRNA-seq) to define the high-resolution transcriptomic architecture of wildtype S. Typhimurium and a ppGpp null strain under growth conditions which model STEX. In doing so we show that ppGpp plays a much wider role in regulating the S. Typhimurium STEX primary transcriptome than previously recognised. Results: Here we report the precise mapping of transcriptional start sites (TSSs) for 78\% of the S. Typhimurium open reading frames (ORFs). The TSS mapping enabled a genome-wide promoter analysis resulting in the prediction of 169 alternative sigma factor binding sites, and the prediction of the structure of 625 operons. We also report the discovery of 55 new candidate small RNAs (sRNAs) and 302 candidate antisense RNAs (asRNAs). We discovered 32 ppGpp-dependent alternative TSSs and determined the extent and level of ppGpp-dependent coding and non-coding transcription. We found that 34\% and 20\% of coding and non-coding RNA transcription respectively was ppGpp-dependent under these growth conditions, adding a further dimension to the role of this remarkable small regulatory molecule in enabling rapid adaptation to the infective environment. Conclusions: The transcriptional architecture of S. Typhimurium and finer definition of the key role ppGpp plays in regulating Salmonella coding and non-coding transcription should promote the understanding of gene regulation in this important food borne pathogen and act as a resource for future research.}, language = {en} } @phdthesis{Schelter2012, author = {Schelter, J{\"o}rg}, title = {The Aharonov-Bohm effect and resonant scattering in graphene}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-74662}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2012}, abstract = {In this thesis, the electronic transport properties of mesoscopic condensed matter systems based on graphene are investigated by means of numerical as well as analytical methods. In particular, it is analyzed how the concepts of quantum interference and disorder, which are essential to mesoscopic devices in general, are affected by the unique electronic and transport properties of the graphene material system. We consider the famous Aharonov-Bohm effect in ring-shaped transport geometries, and, besides providing an overview over the recent developments on the subject, we study the signatures of fundamental phenomena such as Klein tunneling and specular Andreev reflection, which are specific to graphene, in the magnetoconductance oscillations. To this end, we introduce and utilize a variant of the well-known recursive Green's function technique, which is an efficient numerical method for the calculation of transport observables in effectively non-interacting open quantum systems in the framework of a tight binding model. This technique is also applied to study the effects of a specific kind of disorder, namely short-range resonant scatterers, such as strongly bound adatoms or molecules, that can be modeled as vacancies in the graphene lattice. This numerical analysis of the conductance in the presence of resonant scatterers in graphene leads to a non-trivial classification of impurity sites in the graphene lattice and is further substantiated by an independent analytical treatment in the framework of the Dirac equation. The present thesis further contains a formal introduction to the topic of non-equilibrium quantum transport as appropriate for the development of the numerical technique mentioned above, a general introduction to the physics of graphene with a focus on the particular phenomena investigated in this work, and a conclusion where the obtained results are summarized and open questions as well as potential future developments are highlighted.}, subject = {Graphen}, language = {en} } @article{PilsKoppPetersonetal.2012, author = {Pils, Stefan and Kopp, Kathrin and Peterson, Lisa and Tascon, Julia Delgado and Nyffenegger-Jann, Naja J. and Hauck, Christof R.}, title = {The Adaptor Molecule Nck Localizes the WAVE Complex to Promote Actin Polymerization during CEACAM3-Mediated Phagocytosis of Bacteria}, series = {PLoS One}, volume = {7}, journal = {PLoS One}, number = {3}, doi = {10.1371/journal.pone.0032808}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-131747}, pages = {e32808}, year = {2012}, abstract = {Background: CEACAM3 is a granulocyte receptor mediating the opsonin-independent recognition and phagocytosis of human-restricted CEACAM-binding bacteria. CEACAM3 function depends on an intracellular immunoreceptor tyrosine-based activation motif (ITAM)-like sequence that is tyrosine phosphorylated by Src family kinases upon receptor engagement. The phosphorylated ITAM-like sequence triggers GTP-loading of Rac by directly associating with the guanine nucleotide exchange factor (GEF) Vav. Rac stimulation in turn is critical for actin cytoskeleton rearrangements that generate lamellipodial protrusions and lead to bacterial uptake. Principal Findings: In our present study we provide biochemical and microscopic evidence that the adaptor proteins Nck1 and Nck2, but not CrkL, Grb2 or SLP-76, bind to tyrosine phosphorylated CEACAM3. The association is phosphorylation-dependent and requires the Nck SH2 domain. Overexpression of the isolated Nck1 SH2 domain, RNAi-mediated knock-down of Nck1, or genetic deletion of Nck1 and Nck2 interfere with CEACAM3-mediated bacterial internalization and with the formation of lamellipodial protrusions. Nck is constitutively associated with WAVE2 and directs the actin nucleation promoting WAVE complex to tyrosine phosphorylated CEACAM3. In turn, dominant-negative WAVE2 as well as shRNA-mediated knock-down of WAVE2 or the WAVE-complex component Nap1 reduce internalization of bacteria. Conclusions: Our results provide novel mechanistic insight into CEACAM3-initiated phagocytosis. We suggest that the CEACAM3 ITAM-like sequence is optimized to co-ordinate a minimal set of cellular factors needed to efficiently trigger actin-based lamellipodial protrusions and rapid pathogen engulfment.}, language = {en} } @article{SamimiFinkPaeth2012, author = {Samimi, C. and Fink, A. H. and Paeth, H.}, title = {The 2007 flood in the Sahel: causes, characteristics and its presentation in the media and FEWS NET}, series = {Natural Hazards and Earth System Sciences}, volume = {12}, journal = {Natural Hazards and Earth System Sciences}, number = {2}, doi = {10.5194/nhess-12-313-2012}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-131790}, pages = {313 -- 325}, year = {2012}, abstract = {During the rainy season in 2007, reports about exceptional rains and floodings in the Sahel were published in the media, especially in August and September. Institutions and organizations like the World Food Programme (WFP) and FEWS NET put the events on the agenda and released alerts and requested help. The partly controversial picture was that most of the Sahel faced a crisis caused by widespread floodings. Our study shows that the rainy season in 2007 was exceptional with regard to rainfall amount and return periods. In many areas the event had a return period between 1 and 50 yr with high spatial heterogeneity, with the exception of the Upper Volta basin, which yielded return periods of up to 1200 yr. Despite the strong rainfall, the interpretation of satellite images show that the floods were mainly confined to lakes and river beds. However, the study also proves the difficulties in assessing the meteorological processes and the demarcation of flooded areas in satellite images without ground truthing. These facts and the somewhat vague and controversial reports in the media and FEWS NET demonstrate that it is crucial to thoroughly analyze such events at a regional and local scale involving the local population.}, language = {en} } @article{RadermacherWinglerKleikersetal.2012, author = {Radermacher, Kim A. and Wingler, Kirstin and Kleikers, Pamela and Altenh{\"o}fer, Sebastian and Hermans, Johannes J. R. and Kleinschnitz, Christoph and Schmidt, Harald H. H. W.}, title = {The 1027th target candidate in stroke: Will NADPH oxidase hold up?}, series = {Experimental and Translational Stroke Medicine}, volume = {4}, journal = {Experimental and Translational Stroke Medicine}, number = {11}, doi = {10.1186/2040-7378-4-11}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-124197}, year = {2012}, abstract = {As recently reviewed, 1026 neuroprotective drug candidates in stroke research have all failed on their road towards validation and clinical translation, reasons being quality issues in preclinical research and publication bias. Quality control guidelines for preclinical stroke studies have now been established. However, sufficient understanding of the underlying mechanisms of neuronal death after stroke that could be possibly translated into new therapies is lacking. One exception is the hypothesis that cellular death is mediated by oxidative stress. Oxidative stress is defined as an excess of reactive oxygen species (ROS) derived from different possible enzymatic sources. Among these, NADPH oxidases (NOX1-5) stand out as they represent the only known enzyme family that has no other function than to produce ROS. Based on data from different NOX knockout mouse models in ischemic stroke, the most relevant isoform appears to be NOX4. Here we discuss the state-of-the-art of this target with respect to stroke and open questions that need to be addressed on the path towards clinical translation.}, language = {en} } @article{JainJavdanFegeretal.2012, author = {Jain, Preetesh and Javdan, Mohammad and Feger, Franziska K. and Chiu, Pui Yan and Sison, Cristina and Damle, Rajendra N. and Bhuiya, Tawfiqul A. and Sen, Filiz and Abruzzo, Lynne V. and Burger, Jan A. and Rosenwald, Andreas and Allen, Steven L. and Kolitz, Jonathan E. and Rai, Kanti R. and Chiorazzi, Nicholas and Sherry, Barbara}, title = {Th17 and non-Th17 interleukin-17-expressing cells in chronic lymphocytic leukemia: delineation, distribution, and clinical relevance}, series = {Haematologica}, volume = {97}, journal = {Haematologica}, number = {4}, doi = {10.3324/haematol.2011.047316}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-131290}, pages = {599 - 607}, year = {2012}, abstract = {Background The levels and clinical relevance of Th17 cells and other interleukin-17-producing cells have not been analyzed in chronic lymphocytic leukemia. The objective of this study was to quantify blood and tissue levels of Th17 and other interleukin-17-producing cells in patients with this disease and correlate blood levels with clinical outcome. Design and Methods: Intracellular interleukin-17A was assessed in blood and splenic mononuclear cells from patients with chronic lymphocytic leukemia and healthy subjects using flow cytometry. Interleukin-17A-producing cells were analyzed in formalin-fixed, paraffin-embedded spleen and lymph node sections using immunohistochemistry and immunofluorescence. Results: The absolute numbers of Th17 cells in peripheral blood mononuclear cells and the percentages of Th17 cells in spleen cell suspensions were higher in patients with chronic lymphocytic leukemia than in healthy subjects; in six out of eight paired chronic lymphocytic leukemia blood and spleen sample comparisons, Th17 cells were enriched in spleen suspensions. Circulating Th17 levels correlated with better prognostic markers and longer overall survival of the patients. Two "non-Th17" interleukin-17-expressing cells were identified in chronic lymphocytic leukemia spleens: proliferating cells of the granulocytic lineage and mature mast cells. Granulocytes and mast cells in normal spleens did not express interleukin-17. Conversely, both chronic lymphocytic leukemia and healthy lymph nodes contained similar numbers of interleukin-17+ mast cells as well as Th17 cells. Conclusions: Th17 cells are elevated in chronic lymphocytic leukemia patients with better prognostic markers and correlate with longer survival. Furthermore, non-Th17 interleukin-17A-expressing cells exist in chronic lymphocytic leukemia spleens as maturing granulocytes and mature mast cells, suggesting that the microenvironmental milieu in leukemic spleens promotes the recruitment and/or expansion of Th17 and other IL-17-expressing cells. The pathophysiology of Th17 and non-Th17-interleukin-producing cells in chronic lymphocytic leukemia and their distributions and roles in this disease merit further study.}, language = {en} } @article{HommersLewandEhrmann2012, author = {Hommers, Wilfried and Lewand, Martin and Ehrmann, Dominic}, title = {Testing the moral algebra of two Kohlbergian informers}, series = {Ps{\´i}cologica}, volume = {33}, journal = {Ps{\´i}cologica}, number = {3}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-133917}, pages = {515-532}, year = {2012}, abstract = {This paper seeks to unify two major theories of moral judgment: Kohlberg's stage theory and Anderson's moral information integration theory. Subjects were told about thoughts of actors in Kohlberg's classic altruistic Heinz dilemma and in a new egoistical dilemma. These actors's thoughts represented Kohlberg's stages I (Personal Risk) and IV (Societal Risk) and had three levels, High, Medium, and Low. They were presented singly and in a 3 x 3 integration design. Subjects judged how many months of prison the actor deserved. The data supported the averaging model of moral integration theory, whereas Kohlberg's theory has no way to handle the integration problem. Following this, subjects ranked statements related to Kohlberg's first four stages in a procedure similar to that of Rest (1975). Higher score went with larger effect of Societal Risk as predicted by Kohlberg's theory. But contrary to Kohlberg's theory, no age trends were found. Also strongly contrary to Kohlberg's theory, effects of Personal Risk (Stage I) and Societal Risk (Stage IV) correlated positively.}, language = {en} } @article{HintzscheJastrowKleineOstmannetal.2012, author = {Hintzsche, Henning and Jastrow, Christian and Kleine-Ostmann, Thomas and K{\"a}rst, Uwe and Schrader, Thorsten and Stopper, Helga}, title = {Terahertz electromagnetic fields (0.106 THz) do not induce manifest genomic damage in vitro}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-76268}, year = {2012}, abstract = {Terahertz electromagnetic fields are non-ionizing electromagnetic fields in the frequency range from 0.1 to 10 THz. Potential applications of these electromagnetic fields include the whole body scanners, which currently apply millimeter waves just below the terahertz range, but future scanners will use higher frequencies in the terahertz range. These and other applications will bring along human exposure to these fields. Up to now, only a limited number of investigations on biological effects of terahertz electromagnetic fields have been performed. Therefore, research is strongly needed to enable reliable risk assessment. Cells were exposed for 2 h, 8 h, and 24 h with different power intensities ranging from 0.04 mW/cm2 to 2 mW/cm2, representing levels below, at, and above current safety limits. Genomic damage on the chromosomal level was measured as micronucleus formation. DNA strand breaks and alkali-labile sites were quantified with the comet assay. No DNA strand breaks or alkali-labile sites were observed as a consequence of exposure to terahertz electromagnetic fields in the comet assay. The fields did not cause chromosomal damage in the form of micronucleus induction.}, subject = {Toxikologie}, language = {en} }