@article{BocukWolffKrauseetal.2017, author = {Bocuk, Derya and Wolff, Alexander and Krause, Petra and Salinas, Gabriela and Bleckmann, Annalen and Hackl, Christina and Beissbarth, Tim and Koenig, Sarah}, title = {The adaptation of colorectal cancer cells when forming metastases in the liver: expression of associated genes and pathways in a mouse model}, series = {BMC Cancer}, volume = {17}, journal = {BMC Cancer}, number = {342}, doi = {10.1186/s12885-017-3342-1}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-170853}, year = {2017}, abstract = {Background: Colorectal cancer (CRC) is the second leading cause of cancer-related death in men and women. Systemic disease with metastatic spread to distant sites such as the liver reduces the survival rate considerably. The aim of this study was to investigate the changes in gene expression that occur on invasion and expansion of CRC cells when forming metastases in the liver. Methods: The livers of syngeneic C57BL/6NCrl mice were inoculated with 1 million CRC cells (CMT-93) via the portal vein, leading to the stable formation of metastases within 4 weeks. RNA sequencing performed on the Illumina platform was employed to evaluate the expression profiles of more than 14,000 genes, utilizing the RNA of the cell line cells and liver metastases as well as from corresponding tumour-free liver. Results: A total of 3329 differentially expressed genes (DEGs) were identified when cultured CMT-93 cells propagated as metastases in the liver. Hierarchical clustering on heat maps demonstrated the clear changes in gene expression of CMT-93 cells on propagation in the liver. Gene ontology analysis determined inflammation, angiogenesis, and signal transduction as the top three relevant biological processes involved. Using a selection list, matrix metallopeptidases 2, 7, and 9, wnt inhibitory factor, and chemokine receptor 4 were the top five significantly dysregulated genes. Conclusion: Bioinformatics assists in elucidating the factors and processes involved in CRC liver metastasis. Our results support the notion of an invasion-metastasis cascade involving CRC cells forming metastases on successful invasion and expansion within the liver. Furthermore, we identified a gene expression signature correlating strongly with invasiveness and migration. Our findings may guide future research on novel therapeutic targets in the treatment of CRC liver metastasis.}, language = {en} } @article{TischerStuppJansonetal.2021, author = {Tischer, Christina and Stupp, Carolin and Janson, Patrick and Willeke, Kristina and Hung, Chu-Wei and Fl{\"o}ter, Jessica and Kirchner, Anna and Zink, Katharina and Eder, Lisa and Hackl, Christina and M{\"u}hle, Ursula and Weidmann, Manfred and Nennstiel, Uta and Kuhn, Joseph and Weidner, Christian and Liebl, Bernhard and Wildner, Manfred and Keil, Thomas}, title = {Evaluation of screening tests in Bavarian healthcare facilities during the second wave of the SARS-CoV-2 pandemic}, series = {International Journal of Environmental Research and Public Health}, volume = {18}, journal = {International Journal of Environmental Research and Public Health}, number = {14}, issn = {1660-4601}, doi = {10.3390/ijerph18147371}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-242637}, year = {2021}, abstract = {Due to the lack of data on asymptomatic SARS-CoV-2-positive persons in healthcare institutions, they represent an inestimable risk. Therefore, the aim of the current study was to evaluate the first 1,000,000 reported screening tests of asymptomatic staff, patients, residents, and visitors in hospitals and long-term care (LTC) facilities in the State of Bavaria over a period of seven months. Data were used from the online database BayCoRei (Bavarian Corona Screening Tests), established in July 2020. Descriptive analyses were performed, describing the temporal pattern of persons that tested positive for SARS-CoV-2 by real-time polymerase chain reaction (RT-PCR) or antigen tests, stratified by facility. Until 15 March 2021, this database had collected 1,038,146 test results of asymptomatic subjects in healthcare facilities (382,240 by RT-PCR, and 655,906 by antigen tests). Of the RT-PCR tests, 2.2\% (n = 8380) were positive: 3.0\% in LTC facilities, 2.2\% in hospitals, and 1.2\% in rehabilitation institutions. Of the antigen tests, 0.4\% (n = 2327) were positive: 0.5\% in LTC facilities, and 0.3\% in both hospitals and rehabilitation institutions, respectively. In LTC facilities and hospitals, infection surveillance using RT-PCR tests, or the less expensive but less sensitive, faster antigen tests, could facilitate the long-term management of the healthcare workforce, patients, and residents.}, language = {en} }