@phdthesis{Meister2018, author = {Meister, Jonas}, title = {Wertigkeit operativer Stimmangleichung bei Mann-zu-Frau-Transsexualismus - Evaluation der Glottoplastik nach Wendler modifiziert durch Hagen}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-159201}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2018}, abstract = {Transsexualit{\"a}t ist gekennzeichnet durch die dauerhafte Gewissheit, in einem K{\"o}rper des falschen Geschlechts geboren worden zu sein. Bei Mann-zu-Frau-Transsexualit{\"a}t ist die Stimme ein oft untersch{\"a}tzter Bestandteil der ganzheitlichen Therapie. Kann mit konservativer Therapie kein zufriedenstellend weiblicher Stimmklang erreicht werden, ist Phonochirurgie die Methode der Wahl. In W{\"u}rzburg wird hierzu die Glottoplastik nach Wendler modifiziert durch Hagen angewendet. An der vorliegenden Studie zur Qualit{\"a}ts{\"u}berpr{\"u}fung des operativen Verfahrens nahmen insgesamt 21 auf diese Art operierte Patientinnen teil, von denen 18 zu einer Nachuntersuchung in W{\"u}rzburg erschienen und 3 die zugsandten Frageb{\"o}gen ausf{\"u}llten. Erwartet wurden eine Anhebung der mittleren Sprechstimmlage sowie eine Ver{\"a}nderung weiterer objektiver Stimmparameter. Mit einer angehobenen Sprechstimmlage wurde auch eine h{\"o}here Zufriedenheit der Patientinnen mit ihrer Stimme vermutet. Nach Erfahrungsberichten vieler Patientinnen blieben Probleme beim Telefonieren jedoch weiterhin bestehen. Diese f{\"u}r den subjektiven Therapieerfolg sehr wichtige Situation wurde mit einer Perzeptionsstudie gezielt untersucht. Insgesamt zeigte sich die Operation als risikoarme und effektive Therapieoption, um die mittlere Sprechstimmlage anzuheben. So lag die mittlere Sprechstimmlage der Patientinnen postoperativ im Median bei 170 Hz und somit im ausschließlich weiblichen Stimmlagenbereich. Die Anhebung der mittleren Sprechstimmlage ging mit einem leichten Verlust des Dynamikumfangs einher, der jedoch nur von ca. einem Drittel der Patientinnen als st{\"o}rend empfunden wurde. Zur subjektiven Erfolgskontrolle wurden Daten aus den standardisierten Frageb{\"o}gen „Voice Handicap Index" sowie „Fragebogen zur Lebenszufriedenheit" und dem eigenen „W{\"u}rzburger Fragebogen" erhoben und ausgewertet. Die Ergebnisse dieser Frageb{\"o}gen zeigten, abweichend von den guten objektiven Messwerten, deutliche Einschr{\"a}nkungen gegen{\"u}ber einer stimmgesunden Vergleichsgruppe aus der Literatur. Diese Defizite betrafen sowohl die stimmbezogenen Fragengebiete des Voice Handicap Index, als auch die allgemeine Lebenszufriedenheit. Dennoch gaben die Patientinnen an, durch die Stimmoperation ein selbstsichereres Auftreten gegen{\"u}ber fremden Personen gewonnen zu haben. Die subjektive Stimmzufriedenheit korrelierte sowohl mit der mittleren Sprechstimmlage als auch mit der Selbsteinsch{\"a}tzung der Weiblichkeit der Stimme. Bei Frequenz- und Dynamikumfang zeigten sich starke Differenzen zwischen objektiven Messergebnissen und subjektiver Zufriedenheit. F{\"u}r die Perzeptionsstudie zur Telefonsituation wurden von 18 Patientinnen sowie jeweils im Alter gepaarten m{\"a}nnlichen und weiblichen Kontrollsprechern identische Sprachaufnahmen angefertigt und in der Frequenz entsprechend der {\"U}bertragungs-bandbreite am Telefon bearbeitet. Diese Stimmproben wurden 50 m{\"a}nnlichen und 50 weiblichen zuf{\"a}llig ausgew{\"a}hlten Laienjuroren zur Bewertung hinsichtlich des Sprechergeschlechts vorgespielt. Gemessen wurde neben dem Urteil m{\"a}nnlich oder weiblich auch die Zeitspanne von Beginn der Wiedergabe bis zur Urteilseingabe. Ungef{\"a}hr 40 \% der transsexuellen Patientinnen wurden mehrheitlich, also in {\"u}ber 50 \% der Urteile als weiblich bewertet. Die Urteilszeit lag f{\"u}r die Sprachproben der transsexuellen Patientinnen signifikant {\"u}ber der Urteilszeit f{\"u}r m{\"a}nnliche und weibliche Kontrollsprecher. Bezogen auf die Juroren zeigten sich Unterschiede zwischen m{\"a}nnlicher und weiblicher Jurorengruppe: M{\"a}nner ordneten die Sprachproben h{\"a}ufiger einem weiblichen Sprecher zu. Weibliche Juroren f{\"a}llten ihr Urteil hingegen signifikant schneller als m{\"a}nnliche Juroren. Es zeigte sich eine positive Korrelation der Geschlechtszuordnung mit der mittleren Sprechstimmlage. Die unabh{\"a}ngig von der Sprechstimmlage deutlich verl{\"a}ngerte Urteilszeit f{\"u}r transsexuelle Sprecherinnen zeigte jedoch, dass neben der mittleren Sprechstimmlage auch noch andere Faktoren die Geschlechtszuordnung beeinflussen. Dementsprechend existierte keine klare Grenzfrequenz, oberhalb derer Stimmen regelhaft als weiblich wahrgenommen wurden. Auch in einem in der Literatur mehrfach als ausschließlich weiblich definierten Sprechbereich wurden die Stimmen einzelner Patientinnen mehrheitlich als m{\"a}nnlich wahrgenommen. Es konnte kein Zusammenhang der Formantfrequenzen F1 - F3 mit der Geschlechtszuordnung gefunden werden. Zusammenfassend zeigten diese aus objektiven Stimmdaten, Eigen- und Fremd-bewertung bestehenden Ergebnisse, dass durch alleinige Operation zwar eine h{\"o}here Stimmlage, jedoch kein vollst{\"a}ndig weiblicher Stimmklang erreicht wurde. Deswegen muss die Phonochirurgie zuk{\"u}nftig st{\"a}rker in ein umfassendes Behandlungskonzept aus logop{\"a}dischem Stimmtraining, {\"U}bungen f{\"u}r eine weibliche Gestik und Mimik sowie Alltagstraining eingebunden werden. Hierzu wurde in dieser Arbeit ein neuer Behandlungsalgorithmus f{\"u}r die Univ.-HNO-Klinik W{\"u}rzburg erstellt.}, subject = {Transsexualismus}, language = {de} } @phdthesis{SoaresMachado2019, author = {Soares Machado, J{\´e}ssica}, title = {Dosimetry-based Assessment of Radiation-associated Cancer risk for \(^9\)\(^9\)\(^m\)Tc-MAG3 Scans in Infants and Optimization of Administered Activities for \(^6\)\(^8\)Ga-labelled Peptides in Children and Adolescents}, doi = {10.25972/OPUS-19264}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-192640}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {In 2006, 0.18 Mio pediatric nuclear medicine diagnostic exams were performed worldwide. However, for most of the radiopharmaceuticals used data on biokinetics and, as a consequence on dosimetry, are missing or have not been made publicly available. Therefore, most of the dosimetry assessments presented today for diagnostic agents in children and adolescents rely on the biokinetics data of adults. Even for one of the most common nuclear medicine exams for this patient group, renal scintigraphy with 99mTc-MAG3 for assessing renal function measured data on biokinetics is available only from a study performed on four children of different ages. In particular, renal scans are among the most frequent exams performed on infants and toddlers. Due to the young age, this patient group can be classified as a risk group with a higher probability of developing stochastic radiation effects compared to adults. As there are only limited data on biokinetics and dosimetry in this patient group, the aim of this study is to reassess the dosimetry and the associated radiation risk for a larger number of infants undergoing 99mTc-MAG3 renal scans based on a retrospective analysis of existing patient data. Data were collected retrospectively from 34 patients younger than 20 months with normal (20 patients) and abnormal renal function (14 patients) undergoing 99mTc-MAG3 scans. The patient-specific organ activity was estimated based on a retrospective calibration which was performed based on a set of two 3D-printed infant kidneys (newborns: 8.6 ml; 1-year-old: 23.4 ml) filled with known activities. Both phantoms were scanned at different positions along the anteroposterior axis inside a water phantom, providing depth- and size-dependent attenuation correction factors for planar imaging. Time-activity curves were determined by drawing kidney, bladder, and whole body regions-of-interest for each patient, and subsequently applying the calibration factor for conversion of counts to activity. Patient-specific time-integrated activity coefficients were obtained by integrating the organ-specific time-activity curves. Absorbed and effective dose coefficients for each patient were assessed with OLINDA/EXM for the provided newborn and 1-year-old phantom. Based on absorbed dose values, the radiation risk estimation was performed individually for each of the 34 patients with the National Cancer Institute's Radiation Risk Assessment Tool. The patients' organ-specific mean absorbed dose coefficients for the patients with normal renal function were 0.04±0.03 mGy/MBq for the kidneys and 0.27±0.24 mGy/MBq for the bladder. This resulted in a mean effective dose coefficient of 0.02±0.02 mSv/MBq. Based on the dosimetry results, the evaluation of the excess lifetime risk (ELR) for the development of radiation-induced cancer showed that the group of newborns has an ELR of 16.8 per 100,000 persons, which is higher in comparison with the 1-year-old group with an ELR of 14.7 per 100,000 persons. With regard to the 14 patients with abnormal renal function, the mean values for the organ absorbed dose coefficients for the patients were: 0.40±0.34 mGy/MBq for the kidneys and 0.46±0.37 mGy/MBq for the bladder. The corresponding effective dose coefficients (mSv/MBq) was: 0.05±0.02 mSv/MBq. The mean ELR (per 100,000 persons) for developing cancer from radiation exposure for patients with abnormal renal function was 29.2±18.7 per 100,000 persons. As a result, the radiation-associated stochastic risk increases with the organ doses, taking age- and gender-specific influences into account. Overall, the lifetime radiation risk associated with the 99mTc-MAG3 scans is very low in comparison to the general population risk for developing cancer. Furthermore, due to the increasing demand for PET-scans in children and adolescents with 68Ga-labelled peptides, in this work published data sets for those compounds were analyzed to derive recommendations for the administered activities in children and adolescents. The recommendation for the activities to be administered were based on the weight-independent effective dose model, proposed by the EANM Pediatric Dosage Card for application in pediatric nuclear medicine. The aim was to derive recommendations on administered activities for obtaining age-independent effective doses. Consequently, the corresponding weight-dependent effective dose coefficients were rescaled according to the formalism of the EANM dosage card, to determine the radiopharmaceutical class of 68Ga-labeled peptides ("multiples"), and to calculate the baseline activities based on the biokinetics of these compounds and an upper limit of the administered activity of 185 MBq for an adult. Analogous to 18F-fluoride, a minimum activity of 14 MBq is recommended. As a result, for those pediatric nuclear medicine applications involving 68Ga-labeled peptides, new values for the EANM dosage card were proposed and implemented based on the results derived in this work. Overall, despite the low additional radiation-related cancer risk, all efforts should be undertaken to optimize administered activities in children and adolescents for obtaining sufficient diagnostic information with minimal associated radiation risk.}, subject = {Biokinetics}, language = {en} } @phdthesis{Figueiredo2021, author = {Figueiredo, Ludmilla}, title = {Extinction debt of plants, insects and biotic interactions: interactive effects of habitat fragmentation and climate change}, doi = {10.25972/OPUS-23873}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-238738}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {The importance of understanding species extinctions and its consequences for ecosystems and human life has been getting increasing public attention. Nonetheless, regardless of how pressing the current biodiversity loss is, with rare exceptions, extinctions are actually not immediate. Rather, they happen many generations after the disturbance that caused them. This means that, at any point in time after a given disturbance, there is a number of extinctions that are expected to happen. This number is the extinction debt. As long as all the extinctions triggered by the disturbance have not happened, there is a debt to be paid. This delay in extinctions can be interpreted as a window of opportunity, when conservation measures can be implemented. In this thesis, I investigated the relative importance of ecological and evolutionary processes unfolding after different disturbances scenarios, to understand how this knowledge can be used to improve conservation practices aiming at controlling extinctions. In the Introduction (chapter 1), I present the concept of extinction debts and the complicating factors behind its understanding. Namely, I start by presenting i) the theoretical basis behind the definition of extinction debts, and how each theory informed different methodologies of study, ii) the complexity of understanding and predicting eco-evolutionary dynamics, and iii) the challenges to studying extinctions under a regime of widespread and varied disturbance of natural habitats. I start the main body of the thesis (chapter 2) by summarizing the current state of empirical, theoretical, and methodological research on extinction debts. In the last 10 years, extinction debts were detected all over the globe, for a variety of ecosystems and taxonomic groups. When estimated - a rare occurrence, since quantifying debts requires often unavailable data - the sizes of these debts range from 9 to 90\\% of current species richness and they have been sustained for periods ranging from 5 to 570 yr. I identified two processes whose contributions to extinction debts have been studied more often, namely 1) life-history traits that prolong individual survival, and 2) population and metapopulation dynamics that maintain populations under deteriorated conditions. Less studied are the microevolutionary dynamics happening during the payment of a debt, the delayed conjoint extinctions of interaction partners, and the extinction dynamics under different regimes of disturbances (e.g. habitat loss vs. climate change). Based on these observations, I proposed a roadmap for future research to focus on these less studies aspects. In chapters 3 and 4, I started to follow this roadmap. In chapter 3, I used a genomically-explicit, individual-based model of a plant community to study the microevolutionary processes happening after habitat loss and climate change, and potentially contributing to the settlement of a debt. I showed that population demographic recovery through trait adaptation, i.e. evolutionary rescue, is possible. In these cases, rather than directional selection, trait change involved increase in trait variation, which I interpreted as a sign of disruptive selection. Moreover, I disentangled evolutionary rescue from demographic rescue and show that the two types of rescue were equally important for community resistance, indicating that community re-assembly plays an important role in maintaining diversity following disturbance. The results demonstrated the importance of accounting for eco-evolutionary processes at the community level to understand and predict biodiversity change. Furthermore, they indicate that evolutionary rescue has a limited potential to avoid extinctions under scenarios of habitat loss and climate change. In chapter 4, I analysed the effects of habitat loss and disruption of pollination function on the extinction dynamics of plant communities. To do it, I used an individual, trait-based eco-evolutionary model (Extinction Dynamics Model, EDM) parameterized according to real-world species of calcareous grasslands. Specifically, I compared the effects of these disturbances on the magnitude of extinction debts and species extinction times, as well as how species functional traits affect species survival. I showed that the loss of habitat area generates higher number of immediate extinctions, but the loss of pollination generates higher extinction debt, as species take longer to go extinct. Moreover, reproductive traits (clonal ability, absence of selfing and insect pollination) were the traits that most influenced the occurrence of species extinction as payment of the debt. Thus, the disruption of pollination functions arose as a major factor in the creation of extinction debts. Thus, restoration policies should aim at monitoring the status of this and other ecological processes and functions in undisturbed systems, to inform its re-establishment in disturbed areas. Finally, I discuss the implications of these findings to i) the theoretical understanding of extinction debts, notably via the niche, coexistence, and metabolic theories, ii) the planning conservation measures, including communicating the very notion of extinction debts to improve understanding of the dimension of the current biodiversity crisis, and iii) future research, which must improve the understanding of the interplay between extinction cascades and extinction debts.}, subject = {Aussterbedynamik}, language = {en} } @phdthesis{MikaGospodorz2022, author = {Mika-Gospodorz, Bozena}, title = {Development and application of bioinformatics tools for analysis of dual RNA-seq experiments}, doi = {10.25972/OPUS-28126}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-281264}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2022}, abstract = {Dual RNA-seq captures both host and pathogen transcriptomes at the site of infection, facilitating an exploration of processes that play an essential role in pathogenesis and the host defense. This work presents an application of this technique to explore processes occurring during the infection of the human endothelial cells with two clinical isolates of Orientia tsutsugamushi (Ot) — the causative agent of scrub typhus. Combining comparative genomics, transcriptomics, and proteomics, we investigated the transcriptional architecture of Ot and identified non-coding RNAs, operon structures, and widespread antisense transcription, that may have a role in regulation of repetitive genes that are abundant in the Ot genome. In addition, the comparative analysis of bacterial and eukaryotic transcriptomes allowed us to investigate factors that drive the difference in virulence between Karp and UT176 and the host response to these two Ot strains. The host and pathogen transcriptional profiles in each dual RNA-seq study are obtained in‑silico by adopting tools developed for RNA-seq data analysis. The Dualrnaseq pipeline presented in the second part of this work is the first publicly available, highly reproducible, scalable, and user‑friendly workflow developed for processing dual RNA‑seq data of any eukaryotic and bacterial organisms with a reference genome and annotation. It provides three mapping and quantification strategies: (i) alignment-based mapping of reads onto the chimeric genome with STAR followed by counting of uniquely mapped reads with HTSeq; (ii) a fast transcriptome quantification method handling multi‑mapped reads (Salmon with Selective Alignment); (iii) and Salmon alignment-based mode which uses a STAR‑derived alignment combined with Salmon quantification. Performing an initial benchmark analysis of the employed methods we provided recommendations ensuring accurate estimation of host and pathogen transcript expression.}, subject = {Transkriptomanalyse}, language = {en} } @phdthesis{Appeltshauser2018, author = {Appeltshauser, Luise Theresia}, title = {Detektion und Charakterisierung von Autoantik{\"o}rpern gegen paranodale Proteine bei Patienten mit inflammatorischer Polyneuropathie}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-169457}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2018}, abstract = {K{\"u}rzlich wurden bei immunvermittelten Neuropathien Autoantik{\"o}rper gegen Proteine des paranodalen axoglialen Komplexes beschrieben. Deren Charakteristika, Pr{\"a}valenzen, pathophysiologische Relevanz sowie Bedeutung f{\"u}r Diagnostik und Therapie sind jedoch noch nicht abschließend erforscht. In dieser Studie wurden daher Seren und Plasmapheresematerial (PE-Material) von 150 Patienten mit inflammatorischen Neuropathien, n{\"a}mlich 105 mit chronisch inflammatorischer demyelinisierender Polyneuropathie (CIDP), 21 mit Guillain- Barr{\´e}-Syndrom (GBS) und 24 mit multifokaler motorischer Neuropathie (MMN), welche etablierte diagnostische Kriterien der jeweiligen Krankheit erf{\"u}llen, sowie 74 Kontrollen mittels immunhistochemischen F{\"a}rbungen an murinen Zupfnervenpr{\"a}paraten und/oder ELISA (Enzyme-linked Immunosorbent Assay) auf Autoantik{\"o}rper gegen die paranodalen Proteine Caspr, Contactin-1 und Neurofascin- 155 untersucht. Bei positivem Ergebnis wurde deren Spezifit{\"a}t mittels immunhistochemischen F{\"a}rbungen an transfizierten HEK (Human embryonic kidney)- 293-Zellen und Pr{\"a}inkubationsversuchen best{\"a}tigt. Es wurden die IgG-Subklassen und die Antik{\"o}rpertiter bestimmt und das Komplementbindungsverhalten unter Zugabe von intraven{\"o}sen Immunglobulinen (IVIG) mit zellbasierten und ELISA-basierten Methoden analysiert. Klinische Merkmale und das Therapieansprechen Antik{\"o}rper-positiver Patienten wurden ermittelt und mit den experimentellen Ergebnissen in Zusammenhang gesetzt. IgG-Autoantik{\"o}rper gegen Contactin-1 konnten bei vier Patienten mit CIDP nachgewiesen werden, IgG-Autoantik{\"o}rper gegen Caspr bei einem Patienten mit CIDP und einer Patientin mit GBS. Es konnten keine weiteren Autoantik{\"o}rper bei CIDP-Patienten, GBS-Patienten, MMN-Patienten oder bei den Kontrollen detektiert werden. Die Pr{\"a}valenz von Autoantik{\"o}rpern gegen axogliale paranodale Proteine liegt somit in dieser Studie bei jeweils 4,76\% bei CIDP und GBS und 0\% bei MMN. Die Antik{\"o}rper geh{\"o}rten bei Patienten in der akuten Erkrankungsphase (zwei der CIDP-Patienten mit Anti-Contactin-1-Autoantik{\"o}rpern und eine GBS-Patientin mit Anti-Caspr-Autoantik{\"o}rpern) haupts{\"a}chlich den Subklassen IgG1 und IgG3 an, bei Patienten in der chronischen Phase (zwei der CIDP-Patienten mit Anti-Contactin-1-Autoantik{\"o}rpern, ein CIDP-Patient mit Anti-Caspr-Autoantik{\"o}rpern) {\"u}berwog die Subklasse IgG4. Experimentell kam es zur Komplementbindung und -aktivierung abh{\"a}ngig vom Gehalt der Subklassen IgG1-3, nicht aber IgG4; diese konnte durch die Zugabe von IVIG dosisabh{\"a}ngig gemindert werden. Alle Autoantik{\"o}rper-positiven CIDP-Patienten zeigten einen GBS-artigen Beginn mit einer schweren motorischen Beteiligung. Anti-Contactin-1-positive Patienten kennzeichnete klinisch zus{\"a}tzlich das Vorkommen einer Ataxie und eines Tremors, Anti-Caspr-positive Patienten das Vorkommen starker neuropathischer Schmerzen. Elektrophysiologisch standen neben Hinweisen auf eine Leitungsst{\"o}rung Zeichen einer axonalen Sch{\"a}digung im Vordergrund. Als histopathologisches Korrelat lagen eine nodale Architekturst{\"o}rung und ein Axonverlust vor. Die Patienten zeigten nur in der Anfangsphase der Erkrankung ein Ansprechen auf IVIG. Bei drei CIDP-Patienten mit IgG4-Autoantik{\"o}rpern (zwei Patienten mit Anti-Contactin-1-Antik{\"o}rpern und ein Patient mit Anti-Caspr-Antik{\"o}rpern) wurde eine Therapie mit Rituximab durchgef{\"u}hrt. Diese f{\"u}hrte zu einer Titerreduktion und zur zeitgleichen klinischen und elektrophysiologischen Befundbesserung bei zwei Patienten. Die in dieser Arbeit angewandten Screeningmethoden f{\"u}hrten zum erfolgreichen Nachweis von Autoantik{\"o}rpern gegen paranodale axogliale Proteine. Die Patienten mit positivem Autoantik{\"o}rpernachweis definieren eine kleine Untergruppe mit {\"a}hnlichen klinischen Merkmalen im Kollektiv der Patienten mit inflammatorischen Polyneuropathien. Histopathologische Merkmale sowie das Therapieansprechen auf antik{\"o}rperdepletierende Therapie sprechen in Kombination mit den Ergebnissen weiterer Studien zu paranodalen Autoantik{\"o}rpern f{\"u}r eine pathogenetische Relevanz der Autoantik{\"o}rper. Mit einem charakteristischen, am Schn{\"u}rring ansetzenden Pathomechanismus k{\"o}nnten Neuropathien mit Nachweis von paranodalen Autoantik{\"o}rpern der k{\"u}rzlich eingef{\"u}hrten Entit{\"a}t der Nodo-Paranodopathien angeh{\"o}ren. Die Komplementaktivierung und das Therapieansprechen der Patienten auf IVIG stehen m{\"o}glicherweise in Zusammenhang mit der pr{\"a}dominanten IgG-Subklasse. Diese k{\"o}nnte auch in Bezug auf die Chronifizierung eine Rolle spielen. Der Nachweis von Autoantik{\"o}rpern gegen paranodale Proteine hat wohlm{\"o}glich in Zukunft direkte Konsequenzen auf das diagnostische und therapeutische Prozedere bei Patienten mit CIDP und GBS; weitere klinische und experimentelle Daten aus gr{\"o}ßeren, prospektiven Studien sind jedoch zum weiteren Verst{\"a}ndnis und zur Charakterisierung dieser Entit{\"a}t notwendig.}, subject = {Polyneuropathie}, language = {de} } @phdthesis{Muehlemann2018, author = {M{\"u}hlemann, Markus}, title = {Intestinal stem cells and the Na\(^+\)-D-Glucose Transporter SGLT1: potential targets regarding future therapeutic strategies for diabetes}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-169266}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2018}, abstract = {The pancreas and the small intestine are pivotal organs acting in close synergism to regulate glucose metabolism. After absorption and processing of dietary glucose within the small intestine, insulin and glucagon are released from pancreatic islet cells to maintain blood glucose homeostasis. Malfunctions affecting either individual, organ-specific functions or the sophisticated interplay of both organs can result in massive complications and pathologic conditions. One of the most serious metabolic diseases of our society is diabetes mellitus (DM) that is hallmarked by a disturbance of blood glucose homeostasis. Type 1 (T1DM) and type 2 (T2DM) are the main forms of the disease and both are characterized by chronic hyperglycemia, a condition that evokes severe comorbidities in the long-term. In the past, several standard treatment options allowed a more or less adequate therapy for diabetic patients. Albeit there is much effort to develop new therapeutic interventions to treat diabetic patients in a more efficient way, no cure is available so far. In view of the urgent need for alternative treatment options, a more systemic look on whole organ systems, their biological relation and complex interplay is needed when developing new therapeutic strategies for DM. T1DM is hallmarked by an autoimmune-mediated destruction of the pancreatic β-cell mass resulting in a complete lack of insulin that is in most patients restored by applying a life-long recombinant insulin therapy. Therefore, novel regenerative medicine-based concepts focus on the derivation of bioartificial β-like cells from diverse stem cell sources in vitro that survive and sustain to secrete insulin after implantation in vivo. In this context, the first part of this thesis analyzed multipotent intestinal stem cells (ISCs) as alternative cell source to derive bioartificial, pancreatic β-like cells in vitro. From a translational perspective, intestinal stem cells pose a particularly attractive cell source since intestinal donor tissues could be obtained via minimal invasive endoscopy in an autologous way. Furthermore, intestinal and pancreatic cells both derive from the same developmental origin, the endodermal gut tube, favoring the differentiation process towards functional β-like cells. In this study, pancreas-specific differentiation of ISCs was induced by the ectopic expression of the pancreatic transcription factor 1 alpha (Ptf1a), a pioneer transcriptional regulator of pancreatic fate. Furthermore, pancreatic lineage-specific culture media were applied to support the differentiation process. In general, ISCs grow in vitro in a 3D Matrigel®-based environment. Therefore, a 2D culture platform for ISCs was established to allow delivery and ectopic expression of Ptf1a with high efficiency. Next, several molecular tools were applied and compared with each other to identify the most suitable technology for Ptf1a delivery and expression within ISCs as well as their survival under the new established 2D conditions. Success of differentiation was investigated by monitoring changes in cellular morphology and induction of pancreatic differentiation-specific gene expression profiles. In summary, the data of this project part suggest that Ptf1a harbors the potential to induce pancreatic differentiation of ISCs when applying an adequate differentiation media. However, gene expression analysis indicated rather an acinar lineage-determination than a pancreatic β-cell-like specification. Nevertheless, this study proved ISCs not only as interesting stem cell source for the generation of pancreatic cell types with a potential use in the treatment of T1DM but alsoPtf1a as pioneer factor for pancreatic differentiation of ISCs in general. Compared to T1DM, T2DM patients suffer from hyperglycemia due to insulin resistance. In T2DM management, the maintenance of blood glucose homeostasis has highest priority and can be achieved by drugs affecting the stabilization of blood glucose levels. Recent therapeutic concepts are aiming at the inhibition of the intestinal glucose transporter Na+-D-Glucose cotransporter 1 (SGLT1). Pharmacological inhibition of SGLT1 results in reduced postprandial blood glucose levels combined with a sustained and increased Glucagon-like peptide 1 (GLP-1) secretion. So far, systemic side effects of this medication have not been addressed in detail. Of note, besides intestinal localization, SGLT1 is also expressed in various other tissues including the pancreas. In context of having a closer look also on the interplay of organs when developing new therapeutic approaches for DM, the second part of this thesis addressed the effects on pancreatic islet integrity after loss of SGLT1. The analyses comprised the investigation of pancreatic islet size, cytomorphology and function by the use of a global SGLT1 knockout (SGLT1-/-) mouse model. As SGLT1-/- mice develop the glucose-galactose malabsorption syndrome when fed a standard laboratory chow, these animals derived a glucose-deficient, fat-enriched (GDFE) diet. Wildtype mice on either standard chow (WTSC) or GDFE (WTDC) allowed the discrimination between diet- and knockout-dependent effects. Notably, GDFE fed mice showed decreased expression and function of intestinal SGLT1, while pancreatic SGLT1 mRNA levels were unaffected. Further, the findings revealed increased isled sizes, reduced proliferation- and apoptosis rates as well as an increased α-cell and reduced β-cell proportion accompanied by a disturbed cytomorphology in islets when SGLT1 function is lost or impaired. In addition, pancreatic islets were dysfunctional in terms of insulin- and glucagon-secretion. Moreover, the release of intestinal GLP-1, an incretin hormone that stimulates insulin-secretion in the islet, was abnormal after glucose stimulatory conditions. In summary, these data show that intestinal SGLT1 expression and function is nutrient dependent. The data obtained from the islet studies revealed an additional and new role of SGLT1 for maintaining pancreatic islet integrity in the context of structural, cytomorphological and functional aspects. With special emphasis on SGLT1 inhibition in diabetic patients, the data of this project indicate an urgent need for analyzing systemic side effects in other relevant organs to prove pharmacological SGLT1 inhibition as beneficial and safe. Altogether, the findings of both project parts of this thesis demonstrate that focusing on the molecular and cellular relationship and interplay of the small intestine and the pancreas could be of high importance in context of developing new therapeutic strategies for future applications in DM patients.}, subject = {Stammzelle}, language = {en} } @phdthesis{Rehman2018, author = {Rehman, Saba}, title = {Identification of accessible and closed substrate binding sites in the outward open cleft of rat Organic Cation Transporter 1 (rOCT1)}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-169992}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2018}, abstract = {The present study was conducted on the rOCT1, a member of SLC22 family. Structurally, it consists of 12 membrane spanning α-helices with both N- and C-termini intracellular. Studies done so far, through tracer uptake and inhibition, reconstitution of rOCT1 in nanodiscs and proteoliposomes and voltage-clamp fluorometry, have identified the main amino acids in the cleft of rOCT1 that interact in a critical manner with the substrates/inhibitors either directly or indirectly. Homology modeling studies have also supported these observations. In the present study we aimed at measuring the binding of substrates MPP+ and TEA+ to rOCT1 at 0oC in order to establish the amino acids in the cleft region that interact with the substrate when the transporter is frozen in the outward-open conformation. Previously identified crucial amino acids (Asp475, Phe160, Leu447, Arg440, Trp218 and Tyr222) were selected for the study. rOCT1 wild-type and its mutants were stably expressed in HEK293 cells and these cells were used for the binding measurements with the radioactive substrate (MPP+ or TEA+) at 0°C in Mg-Ca-PBS buffer as described in "Materials and Methods" section in detail. rOCT1 wild-type revealed for MPP+-binding a KD which was not significantly different from the corresponding Km value. Also, after addition of 10 nM non-radioactive MPP+, an initial increase of about 20\% in bound MPP+ was observed. The results indicate that the Km for transport is dependent on the binding of MPP+ to the outward-open conformation and hints at the possibility of allosteric interaction between the binding sites. Mutations at position Trp218, Phe160 and Asp475 resulted in a change in the KD value. Trp218 mutations also showed an allosteric increase similar to the rOCT1 wild-type. This study suggests that these amino acids are located at a critical position in the outward-open conformation for MPP+ transport. TEA+-binding could not be observed in rOCT1 wild-type, indicating that the binding site is perhaps inaccessible for TEA+ in frozen outward-open state. The mutants D475E, F160A, L447F, R440K and Y222F showed a very low affinity binding with a very high KD value as compared to the corresponding Km values indicating that the transporter might have different affinities for extra-cellular binding alone and for the complete transport process especially if temperature is the limiting factor. Substrate inhibition studies done using both MPP+ and TEA+ have confirmed the existence of overlapping binding sites for these two ligands. This study has confirmed the direct interaction of Trp218, Phe160, Asp475 with MPP+ and Phe160, Asp475, Leu447, Arg440 and Tyr222 with TEA+ in the outward-open conformation.}, subject = {Kation}, language = {en} } @phdthesis{CabelloGonzalez2018, author = {Cabello Gonz{\´a}lez, Victoria}, title = {From behavioral to neurobiological characterization of Rsk2 knockout mice as an animal model for Coffin-Lowry syndrome}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-171275}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2018}, abstract = {Coffin-Lowry syndrome is a rare syndromic form of X-linked mental retardation caused by heterogeneous loss-of-function mutations in the gene RPS6KA3 that encodes the RSK2 protein. Clinical features are delayed motor development, small height, progressive skeletal malformations and mental retardation. Rsk2 deficiency affects behavioral, cellular and molecular functions. To characterize and investigate how this deficiency affects these functions, we made a series of experiments using Rsk2-deficient mice as the animal model for Coffin-Lowry syndrome. We applied a battery of behavioral tests and included the use of the IntelliCage for the first time as a behavioral paradigm to study anxiety-like behavior and depression-like behavior in Rsk2-deficient mice. Results from the conventional behavioral tests and from the IntelliCage indicate that Rsk2-deficient mice may have an anti-anxiety and anti-depressive phenotype. We evaluated in Rsk2 deficient mice the relative gene expression of a set of genes coding for proteins related to RSK2 which are involved in fear memory, synaptic plasticity, neurogenesis, learning, emotional behavior and stress. We found gene expression alterations in the prefrontal cortex and striatum. These results suggest that RSK2 may be involved in the expression of the genes. RSK2 is known to be related to monoamine neurotransmitter function. We measured the levels of dopamine, serotonin and noradrenaline/norepinephrine and their metabolites in different brain regions of Rsk2-deficient mice. We found differences in the dopaminergic and noradrenergic systems suggesting an increased or decreased activity of these neurotransmission systems as a result of Rsk2 deficiency. Adult neurogenesis is a form of neuronal plasticity and a multi-step process of cell development. We explored if this form of neuronal plasticity was affected by Rsk2-deficiency. Our results indicate that adult hippocampal neurogenesis is not influenced by lifelong Rsk2 deficiency. It would be worth to analyze in the future other aspects of neuroplasticity. We have confirmed, that behavioral characteristics of Rsk2-deficient mice make them an interesting model to study the Coffin-Lowry syndrome by extending the behavioral characterization on the emotional level. Furthermore, we have extended the characterization of the model on a molecular level, opening new opportunities to study and understand the pathophysiological basis of the Coffin-Lowry syndrome.}, subject = {Knockout }, language = {en} } @phdthesis{Wedel2018, author = {Wedel, Carolin}, title = {The impact of DNA sequence and chromatin on transcription in \(Trypanosoma\) \(brucei\)}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-173438}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2018}, abstract = {For cellular viability, transcription is a fundamental process. Hereby, the DNA plays the most elemental and highly versatile role. It has long been known that promoters contain conserved and often well-defined motifs, which dictate the site of transcription initiation by providing binding sites for regulatory proteins. However, research within the last decade revealed that it is promoters lacking conserved promoter motifs and transcribing constitutively expressed genes that constitute the majority of promoters in eukaryotes. While the process of transcription initiation is well studied, whether defined DNA sequence motifs are required for the transcription of constitutively expressed genes in eukaryotes remains unknown. In the highly divergent protozoan parasite Trypanosoma brucei, most of the proteincoding genes are organized in large polycistronic transcription units. The genes within one polycistronic transcription unit are generally unrelated and transcribed by a common transcription start site for which no RNA polymerase II promoter motifs have been identified so far. Thus, it is assumed that transcription initiation is not regulated but how transcription is initiated in T. brucei is not known. This study aimed to investigate the requirement of DNA sequence motifs and chromatin structures for transcription initiation in an organism lacking transcriptional regulation. To this end, I performed a systematic analysis to investigate the dependence of transcription initiation on the DNA sequence. I was able to identify GT-rich promoter elements required for directional transcription initiation and targeted deposition of the histone variant H2A.Z, a conserved component during transcription initiation. Furthermore, nucleosome positioning data in this work provide evidence that sites of transcription initiation are rather characterized by broad regions of open and more accessible chromatin than narrow nucleosome depleted regions as it is the case in other eukaryotes. These findings highlight the importance of chromatin during transcription initiation. Polycistronic RNA in T. brucei is separated by adding an independently transcribed miniexon during trans-splicing. The data in this work suggest that nucleosome occupancy plays an important role during RNA maturation by slowing down the progressing polymerase and thereby facilitating the choice of the proper splice site during trans-splicing. Overall, this work investigated the role of the DNA sequence during transcription initiation and nucleosome positioning in a highly divergent eukaryote. Furthermore, the findings shed light on the conservation of the requirement of DNA motifs during transcription initiation and the regulatory potential of chromatin during RNA maturation. The findings improve the understanding of gene expression regulation in T. brucei, a eukaryotic parasite lacking transcriptional Regulation.}, subject = {Transkription}, language = {en} } @phdthesis{Schreiber2018, author = {Schreiber, Benjamin}, title = {Selective and enhanced fluorescence by biocompatible nanocoatings to monitor G-protein-coupled receptor dynamics}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-173923}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2018}, abstract = {Fluorescence microscopy has become one of the most important techniques for the imaging of biological cells and tissue, since the technique allows for selective labeling with fluorescent molecules and is highly suitable for low-light applications down to the single molecule regime. The methodological requirements are well-defined for studying membrane receptors within a highly localized nanometer-thin membrane. For example, G-protein-coupled receptors (GPCRs) are an extensively studied class of membrane receptors that represent one of the most important pharmaceutical targets. Ligand binding and GPCR activation dynamics are suspected to take place at the millisecond scale and may even be far faster. Thus, techniques that are fast, selective, and live-cell compatible are required to monitor GPCR dynamics. Fluorescence resonance energy transfer (FRET) and total internal reflection fluorescence microscopy (TIRF-M) are methods of choice to monitor the dynamics of GPCRs selectively within the cell membrane. Despite the remarkable success of these modalities, there are limitations. Most importantly, inhomogeneous illumination can induce imaging artifacts, rendering spectroscopic evaluation difficult. Background signal due to scattering processes or imperfect labeling can hamper the signal-to-noise, thus limiting image contrast and acquisition speed. Careful consideration of the internal physiology is required for FRET sensor design, so that ligand binding and cell compatibility are well-preserved despite the fluorescence labeling procedures. This limitation of labeling positions leads to very low signal changes in FRET-based GPCR analysis. In addition, microscopy of these systems becomes even more challenging in single molecule or low-light applications where the accuracy and temporal resolution may become dramatically low. Fluorescent labels should therefore be brighter, protected from photobleaching, and as small as possible to avoid interference with the binding kinetics. The development of new fluorescent molecules and labeling methods is an ongoing process. However, a complete characterization of new labels and sensors takes time. So far, the perfect dye system for GPCR studies has not been found, even though there is high demand. Thus, this thesis explores and applies a different approach based on improved illumination schemes for TIRF-M as well as metal-coated coverslips to enhance fluorescence and FRET efficiency. First, it is demonstrated that a 360° illumination scheme reduces typical TIRF artifacts and produces a much more homogenously illuminated field of view. Second, membrane imaging and FRET spectroscopy are improved by metal coatings that are used to modulate the fluorescent properties of common fluorescent dyes. Computer simulation methods are used to understand the underlying photophysics and to design the coatings. Third, this thesis explores the operational regime and limitations of plasmonic approaches with high sectioning capabilities. The findings are summarized by three publications that are presented in the results section of this work. In addition, the theory of fluorescence and FRET is explained, with particular attention to its emission modulations in the vicinity of metal-dielectric layers. Details of the instrumentation, computer simulations, and cell culture are described in the method section. The work concludes with a discussion of the findings within the framework of recent technological developments as well as perspectives and suggestions for future approaches complete the presented work.}, subject = {G-Protein gekoppelte Rezeptoren}, language = {en} } @phdthesis{ALHijailan2019, author = {AL-Hijailan, Reem Saud}, title = {Establishment of endothelialized cardiac tissue using human induced pluripotent stem cells generated cardiomyocytes}, doi = {10.25972/OPUS-17397}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-173979}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {Cardiovascular diseases are considered the leading cause of death worldwide according to the World Health Organization. Heart failure is the last stage of most of these diseases, where loss of myocardium leads to architectural and functional decline. The definitive treatment option for patients with CVDs is organ or tissue transplantation, which relies on donor availability. Therefore, generating an autologous bioengineered myocardium or heart could overcome this limitation. In addition, generating cardiac patches will provide ventricular wall support and enable reparative stem cells delivery to damaged areas. Although many hurdles still exist, a good number of researches have attempted to create an engineered cardiac tissue which can induce endogenous cardiac repair by replacing damaged myocardium. The present study provided cardiac patches in two models, one by a detergent coronary perfusion decellularization protocol that was optimized, and the other that resulted in a 3D cell-free extracellular matrix with intact architecture and preserved s-glycosaminoglycan and vasculature conduits. Perfusion with 1\% Sodium dodecyle sulfate (SDS) under constant pressure resulted in cell-free porcine scaffold within two and cell-free rat scaffold in 7 days, whereas scaffold perfused with 4\% sodium deoxycholate (SDO) was not able to remove cells completely. Re-reendothelialization of tissue vasculature was obtained by injecting human microvascular endothelial cell and human fibroblast in 2:1 ratio in a dynamic culture. One-week later, CD31 positive cells and endothelium markers were observed, indicating new blood lining. Moreover, functionality test of re-endothelialized tissue revealed improvement in clotting seen in decellularized tissues. When the tissue was ready to be repopulated, porcine induced pluripotent stem cells (PiPSc) were generated by transfected reprogramming of porcine skin fibroblast and then differentiated to cardiac cells following a robust protocol, for an autologous cardiac tissue model. However, due to the limitation in the PiPSc cell number, alternatively, human induced pluripotent stem cells generated cardiac cells were used. For reseeding a coculture of human iPSc generated cardiac cells, human mesenchymal stem cells and human fibroblast in 2:1:1 ratio respectively were used in a dynamic culture for 6-8 weeks. Contractions at different areas of the tissue were recorded at an average beating rate of 67 beats/min. In addition, positive cardiac markers (Troponin T), Fibroblast (vemintin), and mesenchymal stem cells (CD90) were detected. Not only that, but by week 3, MSC started differentiating to cardiac cells progressively until few CD90 positive cells were very few by week 6 with increasing troponin t positive cells in parallel. Electrophysiological and drug studies were difficult to obtain due to tissue thickness and limited assessment sources. However, the same construct was established using small intestine submucosa (SISer) scaffold, which recorded a spontaneous beating rate between 0.88 and 1.2 Hz, a conduction velocity of 23.9 ± 0.74 cm s-1, and a maximal contraction force of 0.453 ± 0.015 mN. Moreover, electrophysiological studies demonstrated a drug-dependent response on beating rate; a higher adrenalin frequency was revealed in comparison to the untreated tissue and isoproterenol administration, whereas a decrease in beating rate was observed with propranolol and untreated tissue. The present study demonstrated the establishment of vascularized cardiac tissue, which can be used for human clinical application.}, language = {en} } @phdthesis{Iltzsche2017, author = {Iltzsche, Fabian}, title = {The Role of DREAM/MMB-mediated mitotic gene expression downstream of mutated K-Ras in lung cancer}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-154108}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2017}, abstract = {The evolutionary conserved Myb-MuvB (MMB) multiprotein complex has an essential role in transcriptional activation of mitotic genes. MMB target genes as well as the MMB associated transcription factor B-Myb and FoxM1 are highly expressed in a range of different cancer types. The elevated expression of these genes correlates with an advanced tumor state and a poor prognosis. This suggests that MMB could contribute to tumorigenesis by mediating overexpression of mitotic genes. Although MMB has been extensively characterized biochemically, the requirement for MMB to tumorigenesis in vivo remains largely unknown and has not been tested directly so far. In this study, conditional knockout of the MMB core member Lin9 inhibits tumor formation in vivo in a mouse model of lung cancer driven by oncogenic K-Ras and loss of p53. The incomplete recombination observed within tumors points towards an enormous selection pressure against the complete loss of Lin9. RNA interference (RNAi)-mediated depletion of Lin9 or the MMB associated subunit B-Myb provides evidence that MMB is required for the expression of mitotic genes in lung cancer cells. Moreover, it was demonstrated that proliferation of lung cancer cells strongly depends on MMB. Furthermore, in this study, the relationship of MMB to the p53 tumor suppressor was investigated in a primary lung cancer cell line with restorable p53 function. Expression analysis revealed that mitotic genes are downregulated after p53 re-expression. Moreover, activation of p53 induces formation of the repressive DREAM complex and results in enrichment of DREAM at mitotic gene promoters. Conversely, MMB is displaced at these promoters. Based on these findings the following model is proposed: In p53-negative cells, mitogenic stimuli foster the switch from DREAM to MMB. Thus, mitotic genes are overexpressed and may promote chromosomal instability and tumorigenesis. This study provides evidence that MMB contributes to the upregulation of G2/M phase-specific genes in p53-negative cells and suggests that inhibition of MMB (or its target genes) might be a strategy for treatment of lung cancer.}, subject = {Nicht-kleinzelliges Bronchialkarzinom (NSCLC)}, language = {en} } @phdthesis{Confalonieri2018, author = {Confalonieri, Davide}, title = {Development and characterization of a bone marrow stem cell niche model}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-163128}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2018}, abstract = {Kritische Knochendefekte stellen heutzutage ein ungel{\"o}stes Problem in der klinischen Praxis dar, da die verf{\"u}gbaren prothetischen Optionen oft die mechanische Anpassung an das Gewebe nicht gew{\"a}hrleisten oder zu wichtigen immunologischen und Implantat-bedingten Komplikationen f{\"u}hren. In diesem Kontext erm{\"o}glichen Tissue Engineering-Ans{\"a}tze neue Strategien, um in vitro Zell-Material Interaktionen zu untersuchen und so die Implantatmaterialien zu optimieren. In dieser Arbeit habe ich Zell-Material Interaktionen eines neuen Kollagen-basierten Scaffolds untersucht, das langfristig als Tr{\"a}gerstruktur f{\"u}r eine zellbasierte Therapie f{\"u}r kritische Knochendefekte entwickelt werden soll. Im Rahmen der Dissertation konnte ich belegen, dass die Kollagen-basierten makropor{\"o}se Mikrocarrier f{\"u}r die Zellvermehrung humaner mesenchymaler Stammzellen (MSC) und deren osteogene Differenzierung unter GMP Bedingungen verwendet werden k{\"o}nnen. Außerdem habe ich die die Kokultur von h{\"a}matopoietischen Stammzellen des Knochenmarks und multiplen Myelomzellen funktionell charakterisiert. Ich konnte erstmals Kulturbedingungen etablieren, die die Langzeitkultur ohne die Verwendung von Zytokinen erm{\"o}glicht. Mittels dieser Kokultur konnte ich ein Knochenmarknischen-Modell etablieren und die Untersuchung der Expression von zentralen Signalkaskaden der Hom{\"o}ostase dieser Nische untersuchen. Ich konnte die Expression von zwei verschiedenen Isoformen von Osteopontin nachweisen, die in Tiermodellen nicht gefunden werden. Diese Isoformen des Osteopontins habe ich kloniert und die rekombinanten Isoformen exprimiert und ihre Rollen in der Hom{\"o}ostase der Knochenmarknische untersucht. Critical size bone defects represent nowadays an unresolved problem in the clinical practice, where the available prosthetic options often lack adequate mechanical matching to the host tissue or lead to important immunological and implant-related complications. In this context, Tissue Engineering approaches promise more effective strategies to study cell-material interactions in vitro and consequently optimize implant materials. In this work, I investigated the cell-scaffold interactions of a new collagen-based scaffold for a putative cell-based therapy for critical size defects to be developed. In the context of this thesis, I could demonstrate that the collagen-based macroporous microcarriers could be employed for the expansion and osteogenic differentiation of human mesenchymal stromal cells (MSCs) under GMP-compliant conditions. Moreover, I functionally characterized the co-culture of bone marrow hematopoietic stem cells and multiple myeloma cells. I was for the first time able to establish culture conditions allowing their long-term culture in absence of externally supplemented cytokines. Using this co-culture, I was able to establish a bone marrow niche model to investigate the expression of key signaling pathways involved in the niche´s homeostasis. I was able to demonstrate the expression of two different isoforms of Osteopontin, that could not previously be detected in animal models. Finally, I cloned these Osteopontin isoforms, expressed recombinant versions of the isoforms, and investigated their roles in the homeostasis of the bone marrow niche.}, subject = {bone marrow niche}, language = {en} } @phdthesis{Dejure2018, author = {Dejure, Francesca Romana}, title = {Investigation of the role of MYC as a stress responsive protein}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-158587}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2018}, abstract = {The transcription factor MYC is deregulated in over 70\% of all human tumors and, in its oncogenic form, plays a major role in the cancer metabolic reprogramming, promoting the uptake of nutrients in order to sustain the biosynthetic needs of cancer cells. The research presented in this work aimed to understand if MYC itself is regulated by nutrient availability, focusing on the two major fuels of cancer cells: glucose and glutamine. Initial observations showed that endogenous MYC protein levels strongly depend on the availability of glutamine, but not of glucose. Subsequent analysis highlighted that the mechanism which accounts for the glutamine-mediated regulation of MYC is dependent on the 3´-untranslated region (3´-UTR) of MYC. Enhanced glutamine utilization by tumors has been shown to be directly linked to MYC oncogenic activity and MYC-dependent apoptosis has been observed under glutamine starvation. Such effect has been described in experimental systems which are mainly based on the use of MYC transgenes that do not contain the 3´-UTR. It was observed in the present study that cells are able to survive under glutamine starvation, which leads to cell cycle arrest and not apoptosis, as previously reported. However, enforced expression of a MYC transgene, which lacks the 3´-UTR, strongly increases the percentage of apoptotic cells upon starvation. Evaluation of glutamine-derived metabolites allowed to identify adenosine nucleotides as the specific stimulus responsible for the glutamine-mediated regulation of MYC, in a 3´-UTR-dependent way. Finally, glutamine-dependent MYC-mediated effects on RNA Polymerase II (RNAPII) function were evaluated, since MYC is involved in different steps of global transcriptional regulation. A global loss of RNAPII recruitment at the transcriptional start site results upon glutamine withdrawal. Such effect is overcome by enforced MYC expression under the same condition. This study shows that the 3´UTR of MYC acts as metabolic sensor and that MYC globally regulates the RNAPII function according to the availability of glutamine. The observations presented in this work underline the importance of considering stress-induced mechanisms impinging on the 3´UTR of MYC.}, subject = {Myc}, language = {en} } @phdthesis{Froehlich2018, author = {Fr{\"o}hlich, Monika Gabriele}, title = {Die Bedeutung von CD28 vermittelter Kostimulation f{\"u}r CD8 T-Zell-Ged{\"a}chtnisreaktionen}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-158791}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2018}, abstract = {Immunologische Ged{\"a}chtnisreaktionen sind die Grundlage um wiederkehrende Erreger schnell und effizient zu bek{\"a}mpfen und um einen Impfschutz zu generieren. Das zellvermittelte Ged{\"a}chtnis wird unter anderem durch CD8 Ged{\"a}chtnis-T-Zellen aufgebaut, welche vor allem im Kontext von Immunreaktionen gegen intrazellul{\"a}rer Erreger vonn{\"o}ten sind, um bei Reinfektion mit den Erregerst{\"a}mmen einen schnellen Schutz zu gew{\"a}hrleisten. Ein detailliertes Wissen {\"u}ber die Generierung, Kontrolle und Reaktivierung der Ged{\"a}chtniszellen ist n{\"u}tzlich, um Ged{\"a}chtnisreaktionen verstehen und lenken zu k{\"o}nnen. Durch die Entdeckung des TZR und CD28 wurden Meilensteine f{\"u}r das Verst{\"a}ndnis der T-Zellaktivierung gelegt und die Grundlage geschaffen, CD8 Ged{\"a}chtnisreaktionen zu verstehen. Auch wenn f{\"u}r prim{\"a}re Immunreaktionen die „2-Signal-Theorie" lange als erwiesen gilt, so blieb die Rolle der Kostimulation f{\"u}r Ged{\"a}chtnisreaktionen lange umstritten. In dieser Arbeit wurden verschiedene methodische Herangehensweisen verwendet, mit denen durchgehend die Bedeutung von CD28 vermittelter Kostimulation f{\"u}r immunologische CD8 T-Zell-Ged{\"a}chtnisreaktionen nachgewiesen wurde. CD28 blockierende Antik{\"o}rper und CD28 induzierbar deletierbare Mauslinien wurden im Modellinfektionssystem mit Ovalbumin produzierenden Listeria monocytogenes zur Analyse der Prim{\"a}r- und Sekund{\"a}rantworten verwendet. Mit diesen Methoden konnte eine Beeintr{\"a}chtigung der Expansion von CD8 Ged{\"a}chtniszellen in Abwesenheit von CD28 bewiesen werden. Weiterhin werden Effektorfunktionen wie Degranulation und Produktion von IFN-γ w{\"a}hrend der Sekund{\"a}rinfektion in Abwesenheit von Kostimulation eingeschr{\"a}nkt. Mit Hilfe von Experimenten, bei denen CD28 suffizienten M{\"a}usen eine geringe Anzahl an naiven, antigenspezifischen, CD28 deletierbaren CD8 T-Zellen transferiert wurden, wurde die Bedeutung der Kostimulation f{\"u}r die Expansion von Ged{\"a}chtniszellen best{\"a}tigt, jedoch konnte {\"u}berraschenderweise auch ein Anstieg der Effektorfunktionen in Abwesenheit von CD28 sowohl w{\"a}hrend der Prim{\"a}r- als auch der Sekund{\"a}rantwort dokumentiert werden. Diese zur globalen Blockade bzw. Deletion widerspr{\"u}chlichen Ergebnisse lassen eine Beteiligung anderer CD28 abh{\"a}ngiger Zelltypen an der Induktion der Effektorfunktionen der CD8 T-Zellen plausibel erscheinen, wie zum Beispiel Einfl{\"u}sse von T-Helferzellen, welche die Effektorfunktionen positiv verst{\"a}rken, solange sie selbst Kostimulationssignale empfangen k{\"o}nnen. Weiterhin konnte gezeigt werden, dass sich Ged{\"a}chtniszellen an den CD28 defizienten Ph{\"a}notyp - eine CD28 intakte immunologische Umgebung vorausgesetzt - adaptieren k{\"o}nnen, wenn ausreichend Zeit nach Deletion und vor Sekund{\"a}rinfektion verstreichen konnte.}, subject = {Antigen CD28}, language = {de} } @phdthesis{Katzorke2019, author = {Katzorke, Andrea}, title = {Der Einfluss von APOE4, MCI und tDCS-augmentiertem kognitiven Training auf die Leistung und h{\"a}modynamische Reaktion w{\"a}hrend Wortfl{\"u}ssigkeitsaufgaben}, doi = {10.25972/OPUS-16967}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-169672}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {Jeder Zwanzigste im Alter von {\"u}ber 60 Jahren ist von einer Demenzerkrankung betroffen. Mit zunehmendem Alter steigt der Anteil Betroffener drastisch. Hierbei ist die Alzheimer-Demenz (AD) der h{\"a}ufigste Subtyp der Demenzerkrankungen. Symptomatisch ist diese Erkrankung vorwiegend charakterisiert durch ein Nachlassen der Ged{\"a}chtnisfunktionen; neuropathologisch weisen Patienten mit AD neurofibrill{\"a}re B{\"u}ndel von Tau-Protein-Ablagerungen, Amyloid-β (Aβ) Plaques sowie einen verringerten zerebralen Blutfluss auf. Aktuell gibt es noch keine Behandlungsm{\"o}glichkeit, um die Erkrankung deutlich zu verlangsamen oder zu stoppen. Bereits Jahrzehnte vor Diagnosestellung der AD beginnen die pathologischen Mechanismen. Aktuelle Behandlungsmethoden setzen jedoch h{\"a}ufig erst nach Diagnosestellung einer AD an, also zu einem Zeitpunkt, an dem das Gehirn schon eine deutliche Neurodegeneration aufweist. Die Untersuchung von Risikogruppen zur Identifikation von fr{\"u}hen Biomarkern und nebenwirkungsarmen Behandlungsmethoden bietet ein großes Potential, um die Erkrankung m{\"o}glichst fr{\"u}h entdecken und verlangsamen oder vielleicht sogar stoppen zu k{\"o}nnen. Risikogruppen im sp{\"a}teren Lebensabschnitt sind beispielsweise Tr{\"a}ger des genetischen Hauptrisikofaktors Apolipoprotein-E4 (APOE4), Patienten mit einer subjektiven kognitiven Beeintr{\"a}chtigung sowie Patienten mit einer objektiven leichten kognitiven Beeintr{\"a}chtigung (engl. mild cognitive impairment; MCI). Die Untersuchung der h{\"a}modynamischen Reaktion mittels funktioneller Nahinfrarotspektroskopie (fNIRS) ist aufgrund der einfachen und kosteng{\"u}nstigen Einsetzbarkeit dieser Methodik besonders praktikabel. Auch der wiederholte Befund einer reduzierten h{\"a}modynamischen Reaktion bei Patienten mit AD scheint vielversprechend. Untersuchungen mit AD-Risikogruppen gibt es bisher jedoch nur wenige; zudem weisen diese uneindeutige Befunde auf. Ziel der vorliegenden Arbeit ist daher die Untersuchung der h{\"a}modynamischen Reaktion bei den Risikogruppen ‚APOE4' und ‚MCI' im Vergleich zu gesunden Kontrollen w{\"a}hrend Wortfl{\"u}ssigkeitsaufgaben, die mittels fNIRS bereits gut etablierte Aufgaben darstellen. Des Weiteren wird in der vorliegenden Arbeit die Wirkung einer nebenwirkungsarmen Behandlungsmethode im Vergleich zu einer sham-Behandlung bei der Risikogruppe ‚subjektive kognitive Beeintr{\"a}chtigung' untersucht. Bei dieser Behandlungsmethode handelt es sich um ein mittels transkranieller Gleichstromstimulation (engl. transcranial direct current stimulation; tDCS) augmentiertes kognitives Training. Es zeigt sich f{\"u}r die Risikogruppe APOE4 bei gleicher Leistung im Vergleich zu Tr{\"a}gern anderer Allelvarianten eine verminderte h{\"a}modynamische Reaktion im typischerweise aufgabenspezifisch genutzten inferioren frontalen Gyrus. Parallel dazu weist der mediale frontale Gyrus, ein Teil des frontoparietalen Kontrollsystems, eine verst{\"a}rkte h{\"a}modynamische Reaktion auf. Bei der Risikogruppe MCI zeigt sich neben einer schlechteren Testleistung eine verminderte h{\"a}modynamische Reaktion des infe-rioren frontotemporalen Kortex, welcher den inferioren frontalen Gyrus umfasst. Das tDCS-augmentierte kognitive Training bewirkt nicht nur einen gruppenunspezifischen Anstieg der h{\"a}modynamischen Reaktion im inferioren frontotemporalen Kortex, die tDCS verst{\"a}rkt diesen Effekt im Vergleich zur sham-Stimulation noch zus{\"a}tzlich. Dies geht jedoch nicht mit einer Ver{\"a}nderung der Testleistung einher. Insgesamt deuten die Ergebnisse darauf hin, dass eine reduzierte h{\"a}modyna-mische Reaktion bereits in fr{\"u}hen Krankheitsstadien der AD detektierbar ist und dies m{\"o}glicherweise als Biomarker f{\"u}r eine fr{\"u}hzeitige Detektion und Behandlung genutzt werden k{\"o}nnte. Des Weiteren bietet die tDCS f{\"u}r fr{\"u}he Krankheitsstadien der AD das Potential einer nebenwirkungsarmen Behandlungsmethode.}, subject = {Alzheimerkrankheit}, language = {de} } @phdthesis{Nelke2019, author = {Nelke, Lena}, title = {Establishment and optimization of 3-dimensional mamma carcinoma models for therapy simulation and drug testing}, doi = {10.25972/OPUS-17228}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-172280}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {Breast cancer is the most common cancer among women worldwide and the second most common cause of cancer death in the developed countries. As the current state of the art in first-line drug screenings is highly ineffective, there is an urgent need for novel test systems that allow for reliable predictions of drug sensitivity. In this study, a tissue engineering approach was used to successfully establish and standardize a 3-dimensional (3D) mamma carcinoma test system that was optimized for the testing of anti-tumour therapies as well as for the investigation of tumour biological issues. This 3D test system is based on the decellularised scaffold of a porcine small intestinal segment and represents the three molecular subsets of oestrogen receptor-positive, HER2/Neu-overexpressing and triple negative breast cancer (TNBC). The characterization of the test system with respect to morphology as well as the expression of markers for epithelial-mesenchymal transition (EMT) and differentiation indicate that the 3D tumour models cultured under static and dynamic conditions reflect tumour relevant features and have a good correlation with in vivo tumour tissue from the corresponding xenograft models. In this respect, the dynamic culture in a flow bioreactor resulted in the generation of tumour models that exhibited best reflection of the morphology of the xenograft material. Furthermore, the proliferation indices of 3D models were significantly reduced compared to 2-dimensional (2D) cell culture and therefore better reflect the in vivo situation. As this more physiological proliferation index prevents an overestimation of the therapeutic effect of cytostatic compounds, this is a crucial advantage of the test system compared to 2D culture. Moreover, it could be shown that the 3D models can recapitulate different tumour stages with respect to tumour cell invasion. The scaffold SISmuc with the preserved basement membrane structure allowed the investigation of invasion over this barrier which tumour cells of epithelial origin have to cross in in vivo conditions during the process of metastasis formation. Additionally, the data obtained from ultrastructural analysis and in situ zymography indicate that the invasion observed is connected to a tumour cell-associated change in the basement membrane in which matrix metalloproteinases (MMPs) are also involved. This features of the model in combination with the mentioned methods of analysis could be used in the future to mechanistically investigate invasive processes and to test anti-metastatic therapy strategies. The validation of the 3D models as a test system with respect to the predictability of therapeutic effects was achieved by the clinically relevant targeted therapy with the monoclonal antibody trastuzumab which induces therapeutic response only in patients with HER2/Neu-overexpressing mamma carcinomas due to its specificity for HER2. While neither in 2D nor in 3D models of all molecular subsets a clear reduction of cell viability or an increase in apoptosis could be observed, a distinct increase in antibody-dependent cell-mediated cytotoxicity (ADCC) was detected only in the HER2/NEU-overexpressing 3D model with the help of an ADCC reporter gene assay that had been adapted for the application in the 3D model in the here presented work. This correlates with the clinical observations and underlines the relevance of ADCC as a mechanism of action (MOA) of trastuzumab. In order to measure the effects of ADCC on the tumour cells in a direct way without the indirect measurement via a reporter gene, the introduction of an immunological component into the models was required. This was achieved by the integration of peripheral blood mononuclear cells (PBMCs), thereby allowing the measurement of the induction of tumour cell apoptosis in the HER2/Neu-overexpressing model. Hence, in this study an immunocompetent model could be established that holds the potential for further testing of therapies from the emergent field of cancer immunotherapies. Subsequently, the established test system was used for the investigation of scientific issues from different areas of application. By the comparison of the sensitivity of the 2D and 3D model of TNBC towards the water-insoluble compound curcumin that was applied in a novel nanoformulation or in a DMSO-based formulation, the 3D test system was successfully applied for the evaluation of an innovative formulation strategy for poorly soluble drugs in order to achieve cancer therapy-relevant concentrations. Moreover, due to the lack of targeted therapies for TNBC, the TNBC model was applied for testing novel treatment strategies. On the one hand, therapy with the WEE1 kinase inhibitor MK 1775 was evaluated as a single agent as well as in combination with the chemotherapeutic agent doxorubicin. This therapy approach did not reveal any distinct benefits in the 3D test system in contrast to testing in 2D culture. On the other hand, a novel therapy approach from the field of cellular immunotherapies was successfully applied in the TNBC 3D model. The treatment with T cells that express a chimeric antigen receptor (CAR) against ROR1 revealed in the static as well as in the dynamic model a migration of T cells into the tumour tissue, an enhanced proliferation of T cells as well as an efficient lysis of the tumour cells via apoptosis and therefore a specific anti-cancer effect of CAR-transduced T cells compared to control T cells. These results illustrate that the therapeutic application of CAR T cells is a promising strategy for the treatment of solid tumours like TNBC and that the here presented 3D models are suitable for the evaluation and optimization of cellular immunotherapies. In the last part of this work, the 3D models were expanded by components of the tumour stroma for future applications. By coculture with fibroblasts, the natural structures of the intestinal scaffold comprising crypts and villi were remodelled and the tumour cells formed tumour-like structures together with the fibroblasts. This tissue model displayed a strong correlation with xenograft models with respect to morphology, marker expression as well as the activation of dermal fibroblasts towards a cancer-associated fibroblast (CAF) phenotype. For the integration of adipocytes which are an essential component of the breast stroma, a coculture with human adipose-derived stromal/stem cells (hASCs) which could be successfully differentiated along the adipose lineage in 3D static as well as dynamic models was established. These models are suitable especially for the mechanistic analysis of the reciprocal interaction between tumour cells and adipocytes due to the complex differentiation process. Taken together, in this study a human 3D mamma carcinoma test system for application in the preclinical development and testing of anti-tumour therapies as well as in basic research in the field of tumour biology was successfully established. With the help of this modular test system, relevant data can be obtained concerning the efficacy of therapies in tumours of different molecular subsets and different tumour stages as well as for the optimization of novel therapy strategies like immunotherapies. In the future this can contribute to improve the preclinical screening and thereby to reduce the high attrition rates in pharmaceutical industry as well as the amount of animal experiments.}, subject = {Brustkrebs}, language = {en} } @phdthesis{Wagner2019, author = {Wagner, Martin}, title = {Chronic Kidney Disease as an Important Co-morbid Condition in Coronary Heart Disease Patients}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-175498}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {In patients with coronary heart disease (CHD) the control of the modifiable "traditional" cardiovascular risk factors such as hypertension, dyslipidemia, diabetes, achieving/maintaining normal body weight and smoking cessation is of major importance to improve prognosis. Guideline recommendations for secondary CHD prevention include specific treatment targets for blood pressure, lipid levels, and markers of glucose metabolism for both younger and older patients. Chronic kidney disease (CKD) has been identified as a "non-traditional" risk factor for worse outcome in CHD patients, as it is associated with a markedly increased risk for subsequent CV events and mortality. The specific objectives of the current thesis-project are to investigate (a) the quality of care in a recent sample of German CHD patients and to investigate variation of risk factor control between younger and elder patients (≤70 versus >70 years), (b) to analyze the prevalence of CKD across Europe in stable CHD patients in the outpatient setting and during a hospital stay for CHD, (c) to investigate the level of awareness of CKD in German CHD patients and their treating physicians. Data from the European-wide EUROASPIRE IV study were used that include data on 7998 CHD patients in the ambulatory setting (study visit) and during a hospital stay for CHD (index). The German EUROASPIRE IV study center in W{\"u}rzburg recruited 536 patients in 2012-2013. Risk factor control was compared against the current recommendations of the European Society of Cardiology. CKD was described by stages of glomerular filtration rate (eGFR) and albuminuria. German patients were asked in an additional kidney specific module whether they have ever been told by a physician about renal impairment. The fact that CKD or acute kidney injury (AKI) was mentioned in prominent parts of the hospital discharge letter as well as correct ICD-coding of CKD or AKI served as a proxy for physician's awareness of CKD. The majority of German CHD patients was treated with the recommended drug therapies including e.g. β-blockers, anti-platelets and statins. However, treatment targets for blood pressure and LDL-cholesterol levels were not achieved in many patients (45\% and 53\%, respectively) and glycemic control in diabetic CHD patients with HbA1-levels <7\% was insufficient (61\%). A minority of patients reported on current smoking (10\%), but unhealthy life-styles e.g. overweight/obesity (85\%/37\%) were frequent. Patterns of care differed between younger and older CHD patients while older patients were less likely to receive the recommended medical CHD-therapy, were more likely to have uncontrolled blood pressure and also to be diabetic. However, a greater proportion of diabetic patients >70 years was achieving the HbA1c target, and less elder patients were current smokers or were obese. About 17\% of patients on average had CKD (eGFR< 60 ml/min/1.73m²) in the entire European sample at the study visit, and an additional 10\% had albuminuria despite preserved eGFR, with considerable variation among countries. Impaired kidney function was observed in every fifth patient admitted for CHD in the entire European dataset of the EUROASPIRE IV study. Of the German CHD patients with CKD at the study visit, only a third were aware of their renal impairment. A minority of these patients was being seen by nephrologists, however, with a higher likelihood of CKD awareness and specialist care in more advanced stages of CKD. About a third of patients admitted for CHD showed either CKD or AKI during the hospital stay, but the discharge letter mentioned chronic or acute kidney disease only in every fifth of these patients. In contrast, correct ICD coding of CKD or AKI was more complete, but still suboptimal. In summary, quality of secondary prevention in German CHD patients indicates considerably room for improvement, with life-style modifications may become an even greater factor in prevention campaigns than medical treatment into certain target ranges. Preventive therapies should also consider different needs in older individuals acknowledging physical and mental potential, other comorbidities and drug-interactions with co-medication. CKD is common in CHD patients, not only in the elderly. Since CHD and CKD affect each other and impact on worse prognosis of each other, raising the awareness of CKD among patients and physicians and considering CKD in medical therapy may improve prognosis and slow disease progression of CHD as well as CKD.}, language = {en} } @phdthesis{Endres2021, author = {Endres, Theresa}, title = {PAF1 complex and MYC couple transcription elongation with double-strand break repair}, doi = {10.25972/OPUS-24955}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-249557}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {The oncogene MYC is deregulated and overexpressed in a high variety of human cancers and is considered an important driver in tumorigenesis. The MYC protein binds to virtually all active promoters of genes which are also bound by the RNA Polymerase II (RNAPII). This results in the assumption that MYC is a transcription factor regulating gene expression. The effects of gene expression are weak and often differ depending on the tumor entities or MYC levels. These observations could argue that the oncogene MYC has additional functions independent of altering gene expression. In relation to this, the high diversity of interaction partners might be important. One of them is the RNAPII associated Factor I complex (PAF1c). In this study, direct interaction between PAF1c and MYC was confirmed in an in-vitro pulldown assay. ChIP sequencing analyses revealed that knockdown of PAF1c components resulted in reduced MYC occupancy at active promoters. Depletion or activation as well as overexpression of MYC led to reduced or enhanced global occupancy of PAF1c in the body of active genes, arguing that MYC and PAF1c bind cooperatively to chromatin. Upon PAF1c knockdown cell proliferation was reduced and additionally resulted in an attenuation of activation or repression of MYC-regulated genes. Interestingly, knockdown of PAF1c components caused an accumulation in S-phase of cells bearing oncogenic MYC levels. Remarkably, enhanced DNA damage, measured by elevated gH2AX and pKAP1 protein levels, was observed in those cells and this DNA damage occurs specifically during DNA synthesis. Strikingly, MYC is involved in double strand break repair in a PAF1c-dependent manner at oncogenic MYC levels. Collectively the data show that the transfer of PAF1c from MYC onto the RNAPII couples the transcriptional elongation with double strand break repair to maintain the genomic integrity in MYC-driven tumor cells.}, language = {en} } @phdthesis{Sharifi2022, author = {Sharifi, Marzieh}, title = {Structural plasticity of active zones in mouse hippocampal mossy fiber synapses}, doi = {10.25972/OPUS-27543}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-275433}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2022}, abstract = {Chemical synapses are a physically and functionally varied type of cell-cell contact specialized in conducting communication between neurons. They are the smallest "computational" unit of the brain and are often classified as electrical and chemical, and they can be distinguished based on their transmission mechanism. These categories could be further broken into many kinds, each having a specific structure-function repertoire that is hypothesized to provide neural networks with distinct computational capabilities. Heterogeneity refers to the variety of structures and functions present in a particular category of synapses. Contributing factors for this heterogeneity may be the synaptic vesicles, the active zone (AZ), the synaptic cleft, the postsynaptic density, and the glial processes associated with the synaptic contacts. Each of these five structural modules has its own set of functions, and their combination determines the spectrum of functional heterogeneity at mammalian excitatory synapses. This work focused on the changes in AZ protein expression after chemical induction of plasticity with forskolin in synaptic contacts of the hippocampal mossy fibers. With the nanoscopic resolution provided by dSTORM, along with the multicolor SIM imaging capabilities, changes in expression of key presynaptic AZ components were analyzed. Using SIM imaging along with a standardized stimulation protocol in acute brain slices from male 16-week old Thy1-mEGFP (Lsi1) mice, the changes of the key AZ proteins Bassoon, Munc 13-1 and Tomosyn were investigated 30 min after stimulation with forskolin (50 μM for 30 min). Forskolin induced changes in these proteins largely in small synaptic contacts whereas no clear changes were detected in large mossy fiber boutons. However, due to the high variability it cannot be ruled out that forskolin may differentially modify AZ protein composition depending on experimental circumstances such as age and gender of mice or the time point and duration of forskolin stimulation. The dSTORM data demonstrated feasibility to perform single molecule 3D imaging of hippocampal presynaptic AZs and allowed quantitative mapping of molecular changes in AZ proteins after induction of plasticity. The findings suggest high heterogeneity in mossy fiber synaptic contacts that may have an impact on the function of neural networks. These imaging approaches may now be used to identify potential differences in functional molecular rearrangements of synaptic proteins in healthy and diseased brain (e.g. after induction of traumatic brain injury).}, subject = {Chemische Synapsen}, language = {en} } @phdthesis{BathePeters2022, author = {Bathe-Peters, Marc}, title = {Spectroscopic approaches for the localization and dynamics of β\(_1\)- and β\(_2\)-adrenergic receptors in cardiomyocytes}, doi = {10.25972/OPUS-25812}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-258126}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2022}, abstract = {In the heart the β\(_1\)-adrenergic receptor (AR) and the β\(_2\)-AR, two prototypical G protein-coupled receptors (GPCRs), are both activated by the same hormones, namely adrenaline and noradrenaline. Both receptors couple to stimulatory G\(_s\) proteins, mediate an increase in cyclic adenosine monophosphate (cAMP) and influence the contractility and frequency of the heart upon stimulation. However, activation of the β\(_1\)-AR, not the β\(_2\)-AR, lead to other additional effects, such as changes in gene transcription resulting in cardiac hypertrophy, leading to speculations on how distinct effects can arise from receptors coupled to the same downstream signaling pathway. In this thesis the question of whether this distinct behavior may originate from a differential localization of these two receptors in adult cardiomyocytes is addressed. Therefore, fluorescence spectroscopy tools are developed and implemented in order to elucidate the presence and dynamics of these endogenous receptors at the outer plasma membrane as well as on the T-tubular network of intact adult cardiomyocytes. This allows the visualization of confined localization and diffusion of the β\(_2\)-AR to the T-tubular network at endogenous expression. In contrast, the β\(_1\)-AR is found diffusing at both the outer plasma membrane and the T-tubules. Upon overexpression of the β\(_2\)-AR in adult transgenic cardiomyocytes, the receptors experience a loss of this compartmentalization and are also found at the cell surface. These data suggest that distinct signaling and functional effects can be controlled by specific cell surface targeting of the receptor subtypes. The tools at the basis of this thesis work are a fluorescent adrenergic antagonist in combination of fluorescence fluctuation spectroscopy to monitor the localization and dynamics of the lowly expressed adrenergic receptors. Along the way to optimizing these approaches, I worked on combining widefield and confocal imaging in one setup, as well as implementing a stable autofocus mechanism using electrically tunable lenses.}, subject = {G-Protein gekoppelte Rezeptoren}, language = {en} } @phdthesis{Solvie2023, author = {Solvie, Daniel Alexander}, title = {Molecular Mechanisms of MYC as Stress Resilience Factor}, doi = {10.25972/OPUS-30539}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-305398}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2023}, abstract = {Cancer is one of the leading causes of death worldwide. The underlying tumorigenesis is driven by the accumulation of alterations in the genome, eventually disabling tumor suppressors and activating proto-oncogenes. The MYC family of proto-oncogenes shows a strong deregulation in the majority of tumor entities. However, the exact mechanisms that contribute to MYC-driven oncogenesis remain largely unknown. Over the past decades, the influence of the MYC protein on transcription became increasingly apparent and was thoroughly investigated. Additionally, in recent years several publications provided evidence for so far unreported functions of MYC that are independent of a mere regulation of target genes. These findings suggest an additional role of MYC in the maintenance of genomic stability and this role is strengthened by key findings presented in this thesis. In the first part, I present data revealing a pathway that allows MYC to couple transcription elongation and DNA double-strand break repair, preventing genomic instability of MYC-driven tumor cells. This pathway is driven by a rapid transfer of the PAF1 complex from MYC onto RNAPII, a process that is mediated by HUWE1. The transfer controls MYC-dependent transcription elongation and, simultaneously, the remodeling of chromatin structure by ubiquitylation of histone H2B. These regions of open chromatin favor not only elongation but also DNA double-strand break repair. In the second part, I analyze the ability of MYC proteins to form multimeric structures in response to perturbation of transcription and replication. The process of multimerization is also referred to as phase transition. The observed multimeric structures are located proximal to stalled replication forks and recruit factors of the DNA-damage response and transcription termination machinery. Further, I identified the HUWE1-dependent ubiquitylation of MYC as an essential step in this phase transition. Cells lacking the ability to form multimers display genomic instability and ultimately undergo apoptosis in response to replication stress. Both mechanisms present MYC as a stress resilience factor under conditions that are characterized by a high level of transcriptional and replicational stress. This increased resilience ensures oncogenic proliferation. Therefore, targeting MYC's ability to limit genomic instability by uncoupling transcription elongation and DNA repair or disrupting its ability to multimerize presents a therapeutic window in MYC-dependent tumors.}, subject = {MYC}, language = {en} } @phdthesis{Sauerwein2023, author = {Sauerwein, Till}, title = {Implementation and application of bioinformatical software for the analysis of dual RNA sequencing data of host and pathogen during infection}, doi = {10.25972/OPUS-30307}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-303075}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2023}, abstract = {Since the advent of high-throughput sequencing technologies in the mid-2010s, RNA se- quencing (RNA-seq) has been established as the method of choice for studying gene expression. In comparison to microarray-based methods, which have mainly been used to study gene expression before the rise of RNA-seq, RNA-seq is able to profile the entire transcriptome of an organism without the need to predefine genes of interest. Today, a wide variety of RNA-seq methods and protocols exist, including dual RNA sequenc- ing (dual RNA-seq) and multi RNA sequencing (multi RNA-seq). Dual RNA-seq and multi RNA-seq simultaneously investigate the transcriptomes of two or more species, re- spectively. Therefore, the total RNA of all interacting species is sequenced together and only separated in silico. Compared to conventional RNA-seq, which can only investi- gate one species at a time, dual RNA-seq and multi RNA-seq analyses can connect the transcriptome changes of the species being investigated and thus give a clearer picture of the interspecies interactions. Dual RNA-seq and multi RNA-seq have been applied to a variety of host-pathogen, mutualistic and commensal interaction systems. We applied dual RNA-seq to a host-pathogen system of human mast cells and Staphylo- coccus aureus (S. aureus). S. aureus, a commensal gram-positive bacterium, can become an opportunistic pathogen and infect skin lesions of atopic dermatitis (AD) patients. Among the first immune cells S. aureus encounters are mast cells, which have previously been shown to be able to kill the bacteria by discharging antimicrobial products and re- leasing extracellular traps made of protein and deoxyribonucleic acid (DNA). However, S. aureus is known to evade the host's immune response by internalizing within mast cells. Our dual RNA-seq analysis of different infection settings revealed that mast cells and S. aureus need physical contact to influence each other's gene expression. We could show that S. aureus cells internalizing within mast cells undergo profound transcriptome changes to adjust their metabolism to survive in the intracellular niche. On the host side, we found out that infected mast cells elicit a type-I interferon (IFN-I) response in an autocrine manner and in a paracrine manner to non-infected bystander-cells. Our study provides the first evidence that mast cells are capable to produce IFN-I upon infection with a bacterial pathogen.}, subject = {Biologie}, language = {en} } @phdthesis{GilPulido2018, author = {Gil Pulido, Jes{\´u}s}, title = {The role of Batf3-dependent dendritic cells and the IL-23 receptor in atherosclerosis}, doi = {10.25972/OPUS-16720}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-167203}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2018}, abstract = {Cardiovascular diseases represent the leading cause of death worldwide, with myocardial infarction and strokes being the most common complications. In both cases, the appearance of an enlarged artery wall as a consequence of a growing plaque is responsible for the disturbance of the blood flow. The formation of plaques is driven by a chronic inflammatory condition known as atherosclerosis, characterized by an initial step of endothelial cell (EC) dysfunction followed by the recruitment of circulating immune cells into the tunica intima of the vessel. Accumulation of lipids and cells lead to the formation of atheromatous plaques that will define the cardiovascular outcome of an individual. The role of the immune system in the progression of atherosclerosis has been widely recognized. By far, macrophages constitute the most abundant cell type in lesions and are known to be the major source of the lipid-laden foam cell pool during the course of the disease. However, other immune cells types, including T cells, dendritic cells (DCs) or mast cells, among others, have been described to be present in human and mouse plaques. How these populations can modulate the atherogenic process is dependent on their specialized function. DCs constitute a unique population with the ability to bridge innate and adaptive immune responses, mainly by their strong capacity to present antigens bound to a major histocompatibility complex (MHC) molecule. Given their ability to polarize T cells and secrete cytokines, their role in atherosclerosis has gained attention for the development of new therapeutic approaches that could impact lesion growth. Hence, knowing the effect of a specific subset is an initial key step to evaluate its potential for clinical purposes. For example, the basic leucine zipper ATF-like 3 transcription factor (Batf3) controls the development of conventional dendritic cells type 1 (cDCs1), characterized by the expression of the surface markers CD8 and CD103. Initially, they were described to promote both T-helper 1 (Th1) and regulatory T cell (Treg) responses, known to accelerate and to protect against atherosclerosis, respectively. The first part of this thesis aimed to elucidate the potential role of Batf3-dependent DCs in atherosclerosis and concluded that even though systemic immune responses were mildly altered they do not modify the course of the disease and may not represent an attractive candidate for clinical studies. DCs also have the ability to impact lesion growth through the release of a broad range of cytokines, which can either directly impact atherosclerotic plaques by modulating resident cells, or by further polarizing T cell responses. Among others, interleukin (IL) 23, a member of the IL-12 family of cytokines, has received much attention during the past year due to its connection to autoimmunity. IL-23 is known to induce pathogenicity of Th17 cells and is responsible for the development of several autoimmune diseases including multiple sclerosis, psoriasis or rheumatoid arthritis. Interestingly, these patients often present with an accelerated course of atherosclerosis and thus, are at higher risk of developing cardiovascular events. Several epidemiological studies have pointed toward a possible connection between IL-23 and its receptor IL-23R in atherosclerosis, although their exact contribution remains to be elucidated. The second part of this thesis showed that resident antigen-presenting cells (APCs) in the aorta produced IL-23 during the steady state but this secretion was greatly enhanced after incubation with oxidized low-density lipoprotein (oxLDL). Furthermore, disruption of the IL-23R signaling led to decreased relative necrotic plaque area in lesions of Ldlr-/-Il23r-/- mice fed a high-fat diet (HFD) for 6 and 12 weeks compared to Ldlr-/- controls. A proposed mechanism involves that increased IL-23 production in the context of atherosclerosis may promote the pathogenicity of IL-23-responding T cells, especially IL-23R+ γδ T cells in the aortic root. Response to IL-23 might increase the release of granulocyte-macrophage colony-stimulating factor (GM-CSF) and IL-17 and alter the pro- and anti-inflammatory balance of cytokines in the aortic root. Altogether, these data showed that the IL-23 / IL-23R axis play a role in plaque stability.}, subject = {Arteriosklerose}, language = {en} } @phdthesis{Bertolini2020, author = {Bertolini, Enrico}, title = {Comparative analysis of insect circadian clocks: a behavioural, anatomical, and molecular study}, doi = {10.25972/OPUS-16465}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-164651}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2020}, abstract = {Biological clocks are endogenous oscillators that give organisms the sense of time. Insects, as the largest taxonomic group, offer fascinating models to study the evolution of clocks and their adaptation to various environments. Although the laboratory fruit fly, Drosophila melanogaster, led the role in the field of circadian biology as it provides a powerful genetic experimental tool, new model insect species need to be established to understand photoperiodic responses and to enable comparative studies. This work reports the behavioural, anatomical, and molecular characterization of the circadian clock of five insect species. The malt fly Chymomyza costata carries a D. melanogaster-like clock network, which supports circadian rhythms under rhythmic environment but cannot self-sustain when isolated from external time cues. The olive fly Bactrocera oleae is the major pest of olive plantations and the characterization of its circadian clock will improve future pest management strategies. The linden bug Pyrrhocoris apterus, a well suited model for investigating circadian and photoperiodic timing interactions, shows high degree of homology of the clock network with D. melanogaster. The scuttle flies Megaselia scalaris and Megaselia abdita represent new fascinating models to study how the clock network controls circadian behaviour. Overall, this work highlights high degree of homology between different circadian clock systems, but at the same time also dramatic differences in terms of circadian behaviour and neuro-anatomical expression of clock components. These have been mainly discussed in regards to the evolution of clocks in Diptera, and the adaptation of clocks to high latitudes.}, language = {en} } @phdthesis{Siverino2020, author = {Siverino, Claudia}, title = {Induction of ectopic bone formation by site directed immobilized BMP2 variants \(in\) \(vivo\)}, doi = {10.25972/OPUS-16935}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-169359}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2020}, abstract = {In contrast to common bone fractures, critical size bone defects are unable to self-regenerate and therefore external sources for bone replacement are needed. Currently, the gold standard to treat critical size bone fractures, resulting from diseases, trauma or surgical interventions, is the use of autologous bone transplantation that is associated with several drawbacks such as postoperative pain, increased loss of blood during surgery and extended operative time. The field of bone tissue engineering focuses on the combination of biomaterials and growth factors to circumvent these adverse events and thereby to improve critical size bone defects treatment. To this aim, a promising approach is represented by using a collagen sponge soaked with one of the most powerful osteoinductive proteins, the bone morphogenetic protein 2 (BMP2). After the approval by the Food and Drug Administration (FDA), BMP2 was used to successfully treat several severe bone defects. However, the use of BMP2 delivery systems is associated with severe side effects such as inflammation, swelling, ectopic bone formation outside of the site of implantation and breathing problems if implanted in the area of the cervical spine. The occurrence of severe side effects is related to the supraphysiological amounts of the applied protein at the implantation site. The BMP2 is typically adsorbed into the scaffold and diffuses rapidly after implantation. Therefore, intensive research has been conducted to improve the protein's retention ability, since a prolonged entrapment of the BMP2 at the implantation site would induce superior bone formation in vivo due to a minimized protein release. By controlling the release from newly designed materials or changing the protein immobilization methods, it seems possible to improve the osteoinductive properties of the resulting BMP2-functionalized scaffolds. The combination of biocompatible and biodegradable scaffolds functionalized with a covalently immobilized protein such as BMP2 would constitute a new alternative in bone tissue engineering by eliminating the aforementioned severe side effects. One of the most common immobilization techniques is represented by the so-called EDC/NHS chemistry. This coupling technique allows covalent biding of the growth factor but in a non-site direct manner, thus producing an implant with uncontrollable and unpredictable osteogenic activities. Therefore, the generation of BMP2 variants harboring functional groups that allow a site-directed immobilization to the scaffold, would enable the production of implants with reproducible osteogenic activity. The new BMP2 variants harbor an artificial amino acid at a specific position of the mature polypeptide sequence. The presence of the unnatural amino acid allows to use particular covalent immobilization techniques in a highly specific and site directed manner. The two selected BMP2 variants, BMP2 E83Plk and BMP2 E83Azide, were expressed in E. coli, renatured and purified by cation exchange chromatography. The final products were intensively analyzed in terms of purity and biological activity in vitro. The two BMP2 variants enabled the application of different coupling techniques and verify the possible options for site directed immobilization to the scaffold. Intensive analyses on the possible side effects caused by the coupling reactions and on the quantification of the coupled protein were performed. Both click chemistry reactions showed high reaction efficacies when the BMP2 variants were coupled to functionalized fluorophores. Quantification by ELISA and scintillation counting of radioactively labeled protein revealed different outcomes. Moreover, the amounts of protein detected for the BMP2 variants coupled to microspheres were similar to that of the wild type protein. Therefore, it was not possible to conclude whether the BMP2 variants were covalently coupled or just adsorbed. BMP2 variants being immobilized to various microspheres induced osteogenic differentiation of C2C12 cells in vitro, but only in those cells that were located in close proximity to the functionalized beads. This selectivity strongly indicates that the protein is for a great portion covalently coupled and not just adsorbed. Moreover, the difference between the covalently coupled BMP2 variants and the adsorbed BMP2 WT was confirmed in vivo. Injection of the BMP2-functionalized microspheres in a rat model induced subcutaneous bone formation. The main aim of the animal experiment was to prove whether covalently coupled BMP2 induces bone formation at significant lower doses if compared to the amount being required if the protein is simply adsorbed. To this aim, several BMP2 concentrations were tested in this animal experiment. The BMP2 variants, being covalently immobilized, were hypothesized to be retained and therefore bio-available at the site of implantation for a prolonged time. However, in the animal experiments, lower doses of either coupled or adsorbed protein were unable to induce any bone formation within the 12 weeks. In contrast, the highest doses induced bone formation that was first detected at week 4. During the 12 weeks of the experiment, an increase in bone density and a steady state bone volume was observed. These results were obtained only for the covalently coupled BMP2 E83Azide but not for BMP2 E83Plk that did not induce bone formation in any condition. The negative outcome after application of BMP2 E83Plk suggested that the coupling reaction might have provoked changes in the protein structure that extremely influenced its osteogenic capabilities in vivo. However, the histological examination of the different ossicles induced either by BMP2 WT or BMP2 E83Azide, revealed clear morphological differences. BMP2 WT induced a bone shell-like structure, while the covalently coupled protein induced uniform bone formation also throughout the inner part. The differences between the two newly formed bones can be clearly associated with the different protein delivery mechanisms. Thus, the developed functionalized microspheres constitute a new interesting strategy that needs further investigations in order to be able to be used as replacement of the currently used BMP2 WT loaded medical devices.}, language = {en} } @phdthesis{JarickneeOttmueller2020, author = {Jarick [n{\´e}e Ottm{\"u}ller], Katja Julika}, title = {Migration of allogenic T cells in intestinal lymphoid structures during acute Graft-versus-Host Disease}, doi = {10.25972/OPUS-17875}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-178758}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2020}, abstract = {T cell infiltration into the intestine occurs after priming and activation in the mesenteric lymph nodes and Peyer's patches and subsequent trafficking via the blood circulation. We hypothesized that additionally to the vascular trafficking route, a fraction of T cells in the Peyer's patches directly migrate into the adjacent lamina propria of the small intestine. To test this hypothesis, we employed a mouse model of acute Graft-versus-Host Disease to study the direct T cell migration from the Peyer's patches to the adjacent lamina propria. First, we analyzed the border of Peyer's patches on histological sections and found that the Peyer's patch is not enclosed by a capsule or basement membrane. Thus, the tissue architecture allows for direct access to the surrounding tissue. With whole-mount light sheet fluorescence microscopy we quantified a three-dimensional gradient of T cells around Peyer's patches on day 2.5 and day 3 after transplantation. This gradient evened out at day 4 and day 6 when high numbers of T cells started to evenly infiltrate the intestine from the blood circulation. We confirmed that gradient-forming T cells around Peyer's patches resided within the tissue parenchyma of the lamina propria and not inside lymphatic vessels. To positively prove that the recently activated donor T cells around Peyer's patches have egressed directly from that patch, we established a protocol for intravital photoconversion of T cells inside Peyer's patches. 12 h after photoconversion inside a single Peyer's patch, photoconverted T cells resided only around this particular Peyer's patch and not elsewhere in the small intestine. This indicated that the T cells did not infiltrate via the blood but migrated to the adjacent lamina propria of the small intestine. Dynamic intravital two-photon microscopy revealed that these T cells next to the Peyer's patch migrated in a random pattern. This suggested that these cells did not follow a positive chemoattractive gradient once they had reached the lamina propria. Laser-capture microdissection combined with RNA sequencing of the mucosa near the Peyer's patch identified a wide range of migration-promoting factors. These included chemokines, co-stimulatory receptors and migration-associated intracellular molecules, which are candidates to promote this direct migration from Peyer's patches. Altogether, we demonstrate for the first time that additionally to the vascular trafficking route, a fraction of T cells migrates directly from the Peyer's patch to the surrounding mucosa. This mechanism implies so far unrecognized regional specification of Peyer's-patch-primed T cells. Our findings may impact treatment strategies to avoid intestinal inflammation or foster immunity after oral vaccination.}, subject = {T-Lymphozyt}, language = {en} } @phdthesis{Schmid2020, author = {Schmid, Benedikt}, title = {Molecular Signaling Mechanisms at the µ-Opioid Receptor}, doi = {10.25972/OPUS-17685}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-176850}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2020}, abstract = {To this day, opioids represent the most effective class of drugs for the treatment of severe pain. On a molecular level, all opioids in use today are agonists at the μ-opioid receptor (μ receptor). The μ receptor is a class A G protein-coupled receptor (GPCR). GPCRs are among the biological structures most frequently targeted by pharmaceuticals. They are membrane bound receptors, which confer their signals into the cell primarily by activating a variety of GTPases called G proteins. In the course of the signaling process, the μ receptor will be phosphorylated by GRKs, increasing its affinity for another entity of signaling proteins called β-arrestins (β-arrs). The binding of a β-arr to the activated μ receptor will end the G protein signal and cause the receptor to be internalized into the cell. Past research showed that the μ receptor's G protein signal puts into effect the desired pain relieving properties of opioid drugs, whereas β-arr recruitment is more often linked to adverse effects like obstipation, tolerance, and respiratory depression. Recent work in academic and industrial research picked up on these findings and looked into the possibility of enhancing G protein signaling while suppressing β-arr recruitment. The conceptual groundwork of such approaches is the phenomenon of biased agonism. It appreciates the fact that different ligands can change the relative contribution of any given pathway to the overall downstream signaling, thus enabling not only receptor-specific but even pathway-specific signaling. This work examined the ability of a variety of common opioid drugs to specifically activate the different signaling pathways and quantify it by means of resonance energy transfer and protein complementation experiments in living cells. Phosphorylation of the activated receptor is a central step in the canonical GPCR signaling process. Therefore, in a second step, expression levels of the phosphorylating GRKs were enhanced in search for possible effects on receptor signaling and ligand bias. In short, detailed pharmacological profiles of 17 opioid ligands were recorded. Comparison with known clinical properties of the compounds showed robust correlation of G protein activation efficacy and analgesic potency. Ligand bias (i.e. significant preference of any path- way over another by a given agonist) was found for a number of opioids in native HEK293 cells overexpressing μ receptor and β-arrs. Furthermore, overexpression of GRK2 was shown to fundamentally change β-arr pharmacodynamics of nearly all opioids. As a consequence, any ligand bias as detected earlier was abolished with GRK2 overexpression, with the exception of buprenorhin. In summary, the following key findings stand out: (1) Common opioid drugs exert biased agonism at the μ receptor to a small extent. (2) Ligand bias is influenced by expression levels of GRK2, which may vary between individuals, target tissues or even over time. (3) One of the opioids, buprenorhin, did not change its signaling properties with the overexpression of GRK2. This might serve as a starting point for the development of new opioids which could lack the ability of β-arr recruitment altogether and thus might help reduce adverse side effects in the treatment of severe pain.}, subject = {Opiatrezeptor}, language = {en} } @phdthesis{Chithelen2022, author = {Chithelen, Janice}, title = {Targeting viral and host factors to optimize anti-measles virus therapy}, doi = {10.25972/OPUS-29305}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-293059}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2022}, abstract = {Measles is an ancient disease with historical records as early as the 9th century. Extensive study as well as advances in scientific knowledge of virology have led to identification of the viral pathogen and subsequent development of an effective vaccine leading to global efforts towards measles elimination. In 2018, around 140,000 deaths were reported due to measles with incomplete vaccine coverage being one of the leading causes of resurgence. Measles is highly contagious and often regarded as a childhood illness. However, measles is associated with a number of complications and persistent infections like subacute sclerosing panencephalitis (SSPE), which have brought into focus the need for specific anti-viral therapies. The aim of this study was to target host and viral factors to optimize anti-measles virus therapy. Our approach was to test a panel of compounds known to inhibit host cell functions or viral factors for their antiviral effect on measles replication. Primary human lymphocytes, persistently infected NT2 cells and post-mitotic neurons were used as in vitro model systems of acute, persistent and neuronal infection respectively to test the inhibitors. Using the inhibitors Ceranib-2 and SKI-II to target the sphingolipid metabolism enzymes acid ceramidase and sphingosine kinase in infected human primary lymphocytes, we observed a decreased protein translational capacity mediated by mTORC1, EIF4E and ribosomal protein S6 phosphorylation that probably contributes to the antiviral effect. In the persistently infected neural NT2 cells and post-mitotic neurons derived from LUHMES cells, we observed effective infection inhibition and viral clearance upon treatment with a small non-nucleoside inhibitor (ERDRP-0519) specifically targeting the Morbillivirus large polymerase. Other inhibitors such as Ribavirin and Favipiravir were less effective. To conclude, 1) we identified a mTOR associated protein translation axis associated with the sphingolipid metabolism, which affects measles virus replication and 2) In vitro persistently infected neuronal and post-mitotic neuron models were successfully used as a rapid method to test antivirals against measles virus.}, language = {en} } @phdthesis{Wallstabe2020, author = {Wallstabe, Julia}, title = {Induktion von GvHD-artigen Gewebesch{\"a}den an humanen artifiziellen Hautmodellen}, doi = {10.25972/OPUS-15396}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-153966}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2020}, abstract = {Graft-versus-Host Disease (GvHD) stellt einen h{\"a}ufigen, den Gesamterfolg einer allogenen h{\"a}matopoetischen Stammzelltransplantation limitierenden Faktor dar. Bei dieser Komplikation attackieren vor allem alloreaktive T-Lymphozyten des Stammzellspenders gesunde K{\"o}rperzellen des Patienten. Infolgedessen kommt es zu Gewebesch{\"a}den in den Zielorganen Haut, Leber und Darm. Die Behandlung der GvHD erfordert eine effektive Immunsuppression, was wiederum Graft-versusTumor-Effekte kompromittiert und den R{\"u}ckfall der malignen Grunderkrankung bedingen kann. Viele Patienten sprechen aus bisher ungekl{\"a}rten Gr{\"u}nden nicht auf die klassische immunsuppressive Therapie mit Steroiden oder second-line Therapien an. Neue zellul{\"a}re Therapien zur Behandlung der refrakt{\"a}ren GvHD sind auf dem Vormarsch, bed{\"u}rfen aber einer weiterf{\"u}hrenden klinischen Testung, auch um die exakten Wirkungsmechanismen zu verstehen. Idealerweise k{\"o}nnten neue Testsysteme das GvHD-Potential von allogenen Stammzellpr{\"a}paraten oder aber das immunsuppressive Potential von neuen GvHD-Therapien vorhersagen, bevor diese in klinischen Studien eingesetzt werden. Ziel der vorliegenden Arbeit war es, ein erstes, in multiplen Replikaten einsetzbares, humanes organotypisches Gewebemodell zur Simulation einer GvHD-Reaktion am Beispiel der Haut zu etablieren. Zu diesem Zweck wurden artifizielle humane Hautmodelle unter statischen (KollagenHautmodelle) und dynamischen Kulturbedingungen (vaskularisierte Hautmodelle) generiert. Die Injektion unstimulierter PBMCs (engl. peripheral blood mononuclear cells) f{\"u}hrte zu keinen histomorphologischen Ver{\"a}nderungen in den KollagenHautmodellen. Im Gegensatz dazu hatte die Injektion vorstimulierter allogener PBMCs eine Zerst{\"o}rung der epidermalen Strukturen der Kollagen-Hautmodelle zur Folge, welche vergleichbar waren mit Gewebesch{\"a}den bei einer akuten GvHD der Haut. Dieselben Sch{\"a}digungen der Epidermis wurden durch die Injektion von Medium{\"u}berst{\"a}nden vorstimulierter PBMCs in die Kollagen-Hautmodelle erreicht. Im Kulturmedium der Kollagen-Hautmodelle wurden hohe Konzentrationen von Interleukin 2 und 17, Interferon gamma sowie Tumornekrosefaktor alpha gemessen, wodurch auf die Beteiligung von Zytokinen an der inflammatorischen Reaktion geschlossen werden konnte. Auch im komplexeren vaskularisierten Hautmodell verursachte die Injektion vorstimulierter PBMCs histomorphologische Ver{\"a}nderungen entsprechend einer akuten Haut-GvHD sowie einen zeitabh{\"a}ngigen Anstieg proinflammatorischer Zytokine. Zusammenfassend zeigen die Resultate dieser Arbeit, dass die Induktion einer starken Inflammations- und Immunreaktion in artifiziellen humanen Hautmodellen, welche histomorphologisch eine GvHD imitiert, m{\"o}glich ist. Dieses Modell k{\"o}nnte als Grundlage f{\"u}r die Entwicklung eines klinisch relevanten Testsystems zur Bestimmung des GvHD-Restpotentials oder zur Festlegung der immunsuppressiven Kapazit{\"a}t innovativer Zellpr{\"a}parate dienen. Somit k{\"o}nnten humane artifizielle GvHDModelle in klinischen Studien eingesetzt werden und die Erfahrungen aus Tiermodellen erg{\"a}nzen sowie erste in vitro Ergebnisse im humanen System liefern, welche dann mit dem tats{\"a}chlichen klinischen Resultat verglichen werden k{\"o}nnten.}, subject = {Graft-versus-host-disease}, language = {de} } @phdthesis{Mohamedgamil2020, author = {Mohamedgamil, Sana Siddig Abdelrahman}, title = {Organization and dynamics of class C GPCR nanodomains in neurons visualized by single-molecule microscopy}, doi = {10.25972/OPUS-17896}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-178963}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2020}, abstract = {Despite the large number of G protein-coupled receptors (GPCRs) expressed in the central nervous system (CNS), little is known about their location, organization, and dynamics in functional nanodomains at synapses. Class C GPCRs including metabotropic glutamate receptors (mGluRs) and the γ-aminobutyric acid subtype B receptor (GABABR) mediate several key functions in synaptic transmission. However, it is still insufficiently understood how these receptors function at synapses to modulate neurotransmission. One limitation is the availability of techniques to examine receptors with high spatiotemporal resolution in physiologically relevant cells. To investigate the distribution and spatiotemporal dynamics of mGluR4 and GABABR in cerebellar slices and cultured hippocampal neurons, I used advanced imaging techniques, including single-molecule imaging and superresolution microscopy with high spatial (10-20 nm) and temporal (20 ms) resolution. The presynaptic active zone (AZ) is a highly organized structure that specializes in neurotransmitter release. mGluR4 is a prototypical presynaptic class C GPCR. mGluR4 mediates an inhibitory effect on presynaptic glutamate release mainly via the inhibition of P/Q type voltage dependent calcium channels (CaV2.1). In this study, I analyzed the organization of mGluR4 at the synapse between parallel fibers and Purkinje cells in the mouse cerebellum with near-molecular resolution using two-color direct stochastic optical reconstruction microscopy (dSTORM). Quantitative analyses revealed a four-fold mGluR4 enrichment at parallel fiber AZs. I found that an AZ contains 29 mGluR4 nanoclusters on average. Each nanocluster contains one or two mGluR4s, with few nanoclusters containing three or more receptors. To assess the spatial distribution of mGluR4 relative to functional active zone elements such as CaV2.1 and Munc 18-1 (an essential component of the synaptic secretory machinery), a distance-based colocalization analysis was used. The analysis revealed positive correlation between mGluR4 and both proteins at a distance of 40 nm. Interestingly, mGluR4 showed a higher positive correlation to Munc 18-1 in comparison to CaV2.1. These results suggest that mGluR4 might directly inhibit the exocytotic machinery to reduce glutamate release from the synaptic vesicles in addition to its role in the inhibition of presynaptic calcium influx. The revealed high degree of mGluR4 organization may provide a new ultrastructural basis to explain the depressive effect of mGluR4 on the neurotransmission. Moreover, I directly imaged GABABR dynamic behavior with high spatiotemporal resolution in living hippocampal neurons utilizing single-molecule total internal reflection fluorescence microscopy (TIRFM). To this purpose, the GABAB1 subunit was engineered with an N-terminal SNAP-tag to enable specific labeling with bright organic fluorophores. On the plasma membrane surface, immobile and mobile GABABRs were detected at both synaptic and extrasynaptic compartments. A mean square displacement analysis (MSD) revealed characteristic dynamic patterns of GABABR depending on receptor location inside or outside of the synapses. The majority of receptors belonging to the extrasynaptic pool displayed rapid and free diffusion. In contrast, approximately 80\% of receptors residing at the synaptic compartments were immobile or confined within limited regions. Receptors located at pre- and post-synaptic sites showed a similar behavior. GABABR lateral diffusion patterns inside and outside synapses might be important for the regulation of efficacy of synaptic inhibition. Altogether, this study puts forward previously unknown GPCR nanoscopic details in functional nanodomains. GPCR spatial organization might be important for the efficiency, fidelity, and rapid signaling required for synaptic transmission.  }, language = {en} } @phdthesis{Surrey2020, author = {Surrey, Verena}, title = {Identification of affected cellular targets, mechanisms and signaling pathways in a mouse model for spinal muscular atrophy with respiratory distress type 1 (SMARD1)}, doi = {10.25972/OPUS-17638}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-176386}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2020}, abstract = {Spinal muscular atrophy with respiratory distress type 1 (SMARD1) is a fatal monogenic motoneuron disease in children with unknown etiology caused by mutations in the immunoglobulin μ-binding protein 2 (IGHMBP2) gene coding for DNA/RNA ATPase/helicase. Despite detailed knowledge of the underlying genetic changes, the cellular mechanisms leading to this disease are not well understood. In the Nmd2J ("neuromuscular disorder") mouse, the mouse model for the juvenile form of SMARD1 patients, in which similar pathological features as diaphragmatic paralysis and skeletal muscle atrophy are observed. Ex vivo studies in Nmd2J mice showed that loss of the motor axon precedes atrophy of the gastrocnemius muscle and does not correlate with neurotransmission defects in the motor endplate. The already described independent myogenic anomalies in the diaphragm and heart of the Nmd2J mouse raised the question whether spinal motoneuron degeneration develops cell autonomously. Ighmbp2 is predominantly localized in the cytoplasm and seems to bind to ribosomes and polysomes, suggesting a role in mRNA metabolism. In this Ph.D. thesis, morphological and functional analyses of isolated Ighmbp2-deficient (Ighmbp2-def.) motoneurons were performed to answer the question whether the SMARD1 phenotype results from dysregulation of protein biosynthesis. Ighmbp2-deficient motoneurons show only negligible morphological alterations with respect to a slight increase in axonal branches. This observation is consistent with only minor changes of transcriptome based on RNA sequencing data from Ighmbp2-deficient motoneurons. Only the mRNA of fibroblast growth factor receptor 1 (Fgfr1) showed significant up-regulation in Ighmbp2-deficient motoneurons. Furthermore, no global aberrations at the translational level could be detected using pulsed SILAC (Stable Isotope Labeling by Amino acids in cell culture), AHA (L-azidohomoalanine) labeling and SUnSET (SUrface SEnsing of Translation) methods. However, a reduced β-actin protein level was observed at the growth cones of Ighmbp2-deficient motoneurons, which was accompanied with a reduced level of Imp1 protein, a known β-actin mRNA interactor. Live-cell imaging studies using fluorescence recovery after photobleaching (FRAP) showed translational down-regulation of eGFPmyr-β-actin 3'UTR mRNA in the growth cones and the cell bodies, although the amount of β-actin mRNA and the total protein amount in Ighmbp2-deficient motoneurons showed no aberrations. This compartment-specific reduction of β-actin protein occurred independently of a non-existent direct IGHMBPF2 binding to β-actin mRNA. Fgfr1, which was upregulated on the RNA level, did not show an increased protein amount in Ighmbp2-deficient motoneurons, whereas a reduced amount could be detected. Interestingly, a correlation could be found between the reduced amount of the Imp1 protein and the increased Fgfr1 mRNA, since the IMP1 protein binds the FGFR1 mRNA and thus could influence the transport and translation of FGFR1 mRNA. In summary, all data suggest that Ighmbp2 deficiency leads to a local but modest disturbance of protein biosynthesis, which might contribute to the motoneuron defects of SMARD1.}, subject = {Spinale Muskelatrophie}, language = {en} } @phdthesis{Zhu2020, author = {Zhu, Mo}, title = {Germination and differentiation of \(Blumeria\) \(graminis\) ascospores and effects of UV-C and white light irradiation on \(B.\) \(graminis\) conidial prepenetration}, doi = {10.25972/OPUS-16647}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-166470}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2020}, abstract = {Blumeria graminis, the obligate biotrophic grass powdery mildew, is a highly pathogenic fungus capable of inflicting foliar diseases and of causing severe yield losses. There is asexual and sexual propagation in the life cycle of B. graminis. In the epidemiological processes of this pathogen, both types of spores - asexual conidia and sexual ascospores - are crucial. Conidia of B. graminis are demonstrated to perceive cuticular very-long-chain aldehydes as molecular signal substances notably promoting germination and differentiation of the infection structure (the appressorium) - the prepenetration processes - in a concentration- and chain-length-dependent manner. Conidial germination and appressorium formation are known to be dramatically impeded by the presence of free water on the host surface. However, sexually formed ascospores are reported to easily germinate immersed in water. There are abundant assays on conidial prepenetration processes. However, with respect to the stimulating effects of very-long-chain aldehydes and to the influence of the presence of free water, ascosporic prepenetration processes are still obscure. In order to study the effects of very-long-chain aldehydes on the ascosporic prepenetration processes of wheat powdery mildew fungus B. graminis f. sp. tritici, Formvar®-based in vitro systems were applied to exclude the secondary host effects (such as host resistance) and to reproducibly provide homogeneous hydrophobic substratum surfaces. By the presence of even-numbered very-long-chain aldehydes (C22 - C30), the appressorium formation of the ascospores was notably triggered in a chain-length dependent manner. N-octacosanal (C28) was the most inducing aldehyde tested. Unlike conidia, ascospores could easily differentiate immersed in water and showed a more variable differentiation pattern even with a single germ tube differentiating an appressorium. To evaluate the alternative management against barley powdery mildew fungus Blumeria graminis f. sp. hordei, the suppressing effects of UV-C irradiation on the developmental processes of conidia on artificial surfaces (in vitro) and on host leaf surfaces (in vivo) were assayed. In vitro and in vivo, a single dose of 100 J m-2 UV-C was adequate to decrease conidial germination to < 20 \% and to reduce appressorium formation to values < 5 \%. UV-C irradiation negatively affected colony pustule size and vegetative propagation. Under photoperiodic conditions of 2h light/16h dark, 6h dark/12h light or 6h dark/18h light, UV-C-treated conidia showed photoreactivation (photo-recovery). White light-mediated photoreactivation was most effective immediately after UV-C irradiation, suggesting that a prolonged phase of darkness after UV-C application increased the efficacy of management against B. graminis. UV-C irradiation increased transcript levels of three putative photolyase genes in B. graminis, indicating those were probably involved in photoreactivation processes. However, mere white light or blue light (wavelength peak, 475 nm) could not induce the up-regulation of these genes. To determine whether visible light directly impacted the prepenetration and penetration processes of this powdery mildew pathogen, conidia of Blumeria graminis f. sp. hordei and Blumeria graminis f. sp. tritici were inoculated onto artificial surfaces and on host leaf surfaces. Samples were analyzed after incubation periods under light conditions (white light intensity and spectral quality). Increasing white light intensities directly impaired conidial prepenetration processes in vitro but not in vivo. Applying an agar layer under the wax membrane compensated for conidial water loss as a consequence of high white light irradiation. Light stimulated in vitro and in vivo the appressorium elongation of B. graminis in a wavelength-dependent manner. Red light was more effective to trigger the elongation of appressorium than blue light or green light assayed. Taken together, the findings of this study demonstrate that 1) a host surface recognition principle based on cuticular very-long-chain aldehydes is a common feature of B. graminis f. sp. tritici ascospores and conidia; 2) the transcriptional changes of three putative photolyase genes in B. graminis are mediated in a UV-C-dependent manner; 3) light directly affected the (pre)penetration processes of B. graminis.}, subject = {Blumeria graminis}, language = {en} } @phdthesis{Staus2021, author = {Staus, Madlen}, title = {Glutathione-dependent reprogramming in melanoma}, doi = {10.25972/OPUS-16842}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-168424}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {These days, treatment of melanoma patients relies on targeted therapy with BRAF/MEK inhibitors and on immunotherapy. About half of all patients initially respond to existing therapies. Nevertheless, the identification of alternative therapies for melanoma patients with intrinsic or acquired resistance is of great importance. In melanoma, antioxidants play an essential role in the maintenance of the redox homeostasis. Therefore, disruption of the redox homeostasis is regarded as highly therapeutically relevant and is the focus of the present work. An adequate supply of cysteine is essential for the production of the most important intracellular antioxidants, such as glutathione. In the present work, it was investigated whether the depletion of cysteine and glutathione is therapeutically useful. Depletion of glutathione in melanoma cells could be achieved by blocking cysteine supply, glutathione synthesis, and NADPH regeneration. As expected, this led to an increased level of reactive oxygen species (ROS). Surprisingly, however, these changes did not impair the proliferation and survival of the melanoma cells. In contrast, glutathione depletion led to cellular reprogramming which was characterized by the induction of mesenchymal genes and the repression of differentiation markers (phenotypic switch). This was accompanied by an increased migration and invasion potential which was favored by the induction of the transcription factor FOSL1. To study in vivo reprogramming, Gclc, the first and rate-limiting enzyme in glutathione synthesis, was knocked out by CRISPR/Cas9 in murine melanoma cells. The cells were devoid of glutathione, but were fully viable and showed a phenotypic switch, the latter only in MITF-expressing B16F1 cells and not in MITF-deficient D4M3A.781 cells. Following subcutaneous injection into immunocompetent C57BL/6 mice, Gclc knockout B16F1 cells grew more aggressively and resulted in an earlier tumor onset than B16F1 control cells. In summary, this work demonstrates that inhibition of cysteine supply and thus, glutathione synthesis leads to cellular reprogramming in melanoma. In this context, melanoma cells show metastatic capabilities, promoting a more aggressive form of the disease.}, subject = {Melanom}, language = {en} } @phdthesis{Berger2023, author = {Berger, Constantin}, title = {Influence of the pancreatic extracellular matrix on pancreatic differentiation of human induced pluripotent stem cells and establishment of 3D organ models}, doi = {10.25972/OPUS-24126}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-241268}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2023}, abstract = {Der Diabetes mellitus bezeichnet eine bislang unheilbare, metabolische Erkrankung, die mit schwerwiegenden Folgeerkrankungen einhergeht. Unter den potentiellen Strategien zur Heilung von Diabetes mellitus stellt die in vitro Generierung adulter β-Zellen des endokrinen Pankreas aus humanen induziert pluripotenten Stammzellen (hiPS) einen vielversprechenden Ansatz dar. Zwar erm{\"o}glichen bisherige Protokolle die Herstellung von Zellen mit einem β-Zell-{\"a}hnlichen Charakter, jedoch zeigen diese eine zun{\"a}chst eingeschr{\"a}nkte Funktion, die sich erst im Verlauf einer vollst{\"a}ndigen, durch Transplantation induzierten, Reifung der Zellen, normalisiert. Vorangegangene Studien zeigen, dass sich die Extrazellularmatrix (EZM) von Geweben positiv auf das {\"U}berleben und die Funktion adulter, isolierter Langerhans-Inseln des Pankreas auswirkt. Vor diesem Hintergrund stellt sich die Frage, ob Einfl{\"u}sse der organspezifischen EZM die finale Reifung in vitro hergestellter β-Zellen herbeif{\"u}hren k{\"o}nnen. Um diese Hypothese zu testen, wurde im Rahmen der vorliegenden Studie die Wirkung der pankreatischen EZM auf die in vitro Differenzierung von hiPS zu endokrinen Zellen des Pankreas untersucht sowie die Eignung der pankreatischen EZM zur Etablierung eines Organmodells des endokrinen Pankreas erprobt. Hierzu wurde zun{\"a}chst eine pankreasspezifische EZM-Tr{\"a}gerstruktur (PanMa) durch Dezellularisierung von Pankreaten des Schweins mittels Natriumdesoxycholat hergestellt. Die generierte PanMa wurde anhand (immun-) histologischer F{\"a}rbungen, Rasterelektronen-mikroskopie, Feststellung des DNA-Gehalts sowie durch Versuche zur Perfusion und Wiederbesiedelung mit Endothelzellen eingehend charakterisiert. Zudem wurde auf Basis der ermittelten Daten ein Bewertungssystem (PancScore) zur standardisierten Herstellung der PanMa entwickelt. Als N{\"a}chstes wurde untersucht, ob die PanMa {\"u}ber gewebespezifische EZM-Merkmale verf{\"u}gt. Zu diesem Zweck wurden biophysikalische und strukturelle Eigenschaften wie Festigkeit, Porosit{\"a}t und Hygroskopie mittels rheologischer Messungen sowie Versuchen zur Teilchendiffusion und zum Wasserbindungsverhalten bestimmt und mit azellul{\"a}ren EZMs des D{\"u}nndarms (SISser) und der Lunge (LungMa) verglichen. Nach der eingehenden Analyse der PanMa wurde deren Effekt auf die Eigenschaften von Stammzellen sowie auf fr{\"u}he Stadien der Stammzellentwicklung untersucht. Hierzu wurde die PanMa als Tr{\"a}gerstruktur w{\"a}hrend der Erhaltung sowie der spontanen Differenzierung von hiPS verwendet und der Einfluss der PanMa anhand von Genexpressionsanalysen und immunhistochemischer F{\"a}rbungen analysiert. In einem n{\"a}chsten Schritt wurde die Wirkung der PanMa auf die Differenzierung von hiPS zu endokrinen Zellen des Pankreas untersucht. Hierf{\"u}r wurde die PanMa zum einen in fl{\"u}ssiger Form als Mediumzusatz sowie als solide Tr{\"a}gerstruktur w{\"a}hrend der Differenzierung von hiPS zu hormonexprimierenden Zellen (Rezania et al. 2012; Rezania et al. 2014) oder maturierenden β-Zellen verwendet (Rezania et al. 2014). Der Effekt der PanMa wurde anhand von Genexpressions-analysen, immunhistochemischer F{\"a}rbungen und Analysen zur Glukose-abh{\"a}ngigen Insulinsekretion untersucht. In einem letzten Teil der Studie wurde die Eignung der PanMa zur verl{\"a}ngerten Kultivierung von hiPS-abgeleiteten endokrinen Zellen des Pankreas im Hinblick auf die Etablierung eines Organmodells des endokrinen Pankreas getestet. Hierzu wurde die PanMa zu einem Hydrogel weiterverarbeitet, welches zur Einkapselung und Kultivierung von hiPS-abgeleiteten hormonexprimierenden Zellen eingesetzt wurde. Um die Auswirkungen der Hydrogel-Kultur nachzuvollziehen, wurden die kultivierten Zellen mittels Genexpression, immun-histochemischer F{\"a}rbungen und Analysen zur Glukose-abh{\"a}ngigen Insulinsekretion untersucht. Mittels Dezellularisierung porziner Pankreaten konnte eine zellfreie, pankreasspezifische EZM-Tr{\"a}gerstruktur mit geringen Restbest{\"a}nden an DNA sowie einer weitgehend erhaltenen Mikro- und Ultrastruktur mit typischen EZM-Komponenten wie Kollagen I, III und IV hergestellt werden. Im Rahmen der Besiedelung arterieller Gef{\"a}ße mit humanen Endothelzellen wurde die Zellkompatibilit{\"a}t der hergestellten PanMa sowie eine weitgehende Unversehrtheit der Gef{\"a}ßstrukturen nachgewiesen. Verglichen zu SISser und LungMa zeichnete sich die PanMa als eine relativ weiche, stark wasserbindende, faserbasierte Struktur aus. Weiterhin konnten Hinweise f{\"u}r einen Effekt der PanMa auf den Stammzellcharakter und die fr{\"u}he Entwicklung von hiPS beobachtet werden. Hierbei f{\"u}hrte die Erhaltung von hiPS auf der PanMa zu einer leicht ver{\"a}nderten Expression von Genen des Kernpluripotenznetzwerks sowie zu einem reduziertem NANOG-Proteinsignal. Einhergehend mit diesen Beobachtungen zeigten hiPS w{\"a}hrend spontaner Differenzierung auf der PanMa eine verst{\"a}rkte endodermale Entwicklung. Im Verlauf der pankreatischen Differenzierung f{\"u}hrte die Kultivierung auf der PanMa zu einer signifikant verringerten Expression von Glukagon und Somatostatin, w{\"a}hrend die Expression von Insulin unver{\"a}ndert blieb, was auf eine Verminderung endokriner α- und δ-Zellen hinweist. Diese Ver{\"a}nderung {\"a}ußerte sich jedoch nicht in einer verbesserten Glukose-abh{\"a}ngigen Insulinsekretion der generierten hormonexprimierenden Zellen. Unter Anwendung der PanMa als Hydrogel konnten hormonexprimierenden Zellen {\"u}ber einen verl{\"a}ngerten Zeitraum kultiviert werden. Nach 21 Tagen in Kultur zeigten die eingekapselten hormonexprimierenden Zellen eine unver{\"a}ndert hohe Viabilit{\"a}t, wiesen allerdings bereits eine erste ver{\"a}nderte Zellanordnung sowie eine leicht verminderte Glukose-abh{\"a}ngige Insulinsekretion auf. Zusammengefasst konnte in dieser Studie ein biologischer Effekt gewebespezifischer EZM-Merkmale auf die Differenzierung von hiPS nachgewiesen werden. Dar{\"u}ber hinaus weisen die Daten auf eine relevante Funktion der EZM im Rahmen der endokrinen Spezifizierung von hiPS w{\"a}hrend der pankreatischen Differenzierung hin. Diese Beobachtungen verdeutlichen die eminente Rolle der EZM in der Herstellung von funktionalen hiPS-abgeleiteten Zellen und pl{\"a}dieren f{\"u}r eine st{\"a}rkere Einbindung organspezifischer EZMs im Bereich des Tissue Engineering und der klinischen Translation in der Regenerativen Medizin.}, subject = {Bauchspeicheldr{\"u}se}, language = {en} } @phdthesis{Malkmus2023, author = {Malkmus, Christoph}, title = {Establishment of a 3D \(in\) \(vitro\) skin culture system for the obligatory human parasite \(Onchocerca\) \(volvulus\)}, doi = {10.25972/OPUS-31717}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-317171}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2023}, abstract = {Onchocerciasis, the world's second-leading infectious cause of blindness in humans -prevalent in Sub-Saharan Africa - is caused by Onchocerca volvulus (O. volvulus), an obligatory human parasitic filarial worm. Commonly known as river blindness, onchocerciasis is being targeted for elimination through ivermectin-based mass drug administration programs. However, ivermectin does not kill adult parasites, which can live and reproduce for more than 15 years within the human host. These impediments heighten the need for a deeper understanding of parasite biology and parasite-human host interactions, coupled with research into the development of new tools - macrofilaricidal drugs, diagnostics, and vaccines. Humans are the only definitive host for O. volvulus. Hence, no small-animal models exist for propagating the full life cycle of O. volvulus, so the adult parasites must be obtained surgically from subcutaneous nodules. A two-dimensional (2D) culture system allows that O. volvulus larvae develop from the vector-derived infective stage larvae (L3) in vitro to the early pre-adult L5 stages. As problematic, the in vitro development of O. volvulus to adult worms has so far proved infeasible. We hypothesized that an increased biological complexity of a three-dimensional (3D) culture system will support the development of O. volvulus larvae in vitro. Thus, we aimed to translate crucial factors of the in vivo environment of the developing worms into a culture system based on human skin. The proposed tissue model should contain 1. skinspecific extracellular matrix, 2. skin-specific cells, and 3. enable a direct contact of larvae and tissue components. For the achievement, a novel adipose tissue model was developed and integrated to a multilayered skin tissue comprised of epidermis, dermis and subcutis. Challenges of the direct culture within a 3D tissue model hindered the application of the three-layered skin tissue. However, the indirect coculture of larvae and skin models supported the growth of fourth stage (L4) larvae in vitro. The direct culture of L4 and adipose tissue strongly improved the larvae survival. Furthermore, the results revealed important cues that might represent the initial encapsulation of the developing worm within nodular tissue. These results demonstrate that tissue engineered 3D tissues represent an appropriate in vitro environment for the maintenance and examination of O. volvulus larvae.}, subject = {Tissue Engineering}, language = {en} } @phdthesis{Messinger2023, author = {Messinger, Julia}, title = {Die Effekte von IVIG auf die Antik{\"o}rperbindung und Komplementablagerung bei Anti-Neurofascin-positiver Nodo-Paranodopathie}, doi = {10.25972/OPUS-32110}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-321109}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2023}, abstract = {Autoantik{\"o}rper gegen nodo-paranodale Proteine des Ranvier'schen Schn{\"u}rrings wie Neurofascin-155 (NF-155), Contactin-1 und Caspr wurden in der Literatur bei Patienten/Patientinnen mit Immunneuropathien beschrieben. Bei zwei bis zehn Prozent der Patienten/Patientinnen mit Immunneuropathien k{\"o}nnen Autoantik{\"o}rper gegen Isoformen des Neurofascin detektiert werden. Patienten/Patientinnen mit Autoantik{\"o}rpern gegen NF-155 weisen gemeinsame klinische Merkmale auf, unter anderem einen schweren Verlauf mit subakutem Beginn, vorwiegend motorischen Defiziten, Tremor und einem schlechten Ansprechen auf eine Therapie mit intraven{\"o}sen Immunglobulinen (IVIG). Ein Grund f{\"u}r Letzteres k{\"o}nnte sein, dass es sich {\"u}berwiegend um Autoantik{\"o}rper der Subklasse IgG4 handelt, die als anti-inflammatorisch gelten und kein Komplement aktivieren. Neben der IgG4-Subklasse k{\"o}nnen bei manchen Erkrankten auch die proinflammatorischen IgG-Subklassen 1 bis 3 nachgewiesen werden. Bei der Anti-Pan-Neurofascin (155/140/186) Polyneuropathie zeigt sich klinisch h{\"a}ufig ein fulminanter Ph{\"a}notyp mit IgG3 Pr{\"a}dominanz. Das Ziel dieser Studie war, die Autoantik{\"o}rper-induzierte Komplementablagerung zu detektieren, sowie die Rolle der IgG Subklasse und die Effekte von IVIG auf Antik{\"o}rperbindung, Komplementaktivierung und Effektorfunktionen zu untersuchen. Hierzu wurde das Serum von 212 Probanden/-innen mit der Verdachtsdiagnose einer entz{\"u}ndlichen Neuropathie auf Autoantik{\"o}rper gegen NF-155 mittels ELISA und Bindungsversuchen an M{\"a}usezupfnerven gescreent. Im Fall eines positiven Ergebnisses dienten zellbasierte Bindungsversuche mit NF-155-transfizierten HEK-293- Zellen als Best{\"a}tigungstest. Die Effekte unterschiedlicher IVIG Konzentrationen auf die Antik{\"o}rperbindung und Komplementablagerung wurden in ELISA, Komplementbindungsassays und zellbasierten Verfahren getestet. Außerdem wurde mithilfe von LDH-Zytotoxizit{\"a}tsmessungen die Komplement-induzierte Zelllyse sowie die Effekte von IVIG untersucht. Klinische Daten wurden retrospektiv ausgewertet. F{\"u}nf Patienten/Patientinnen mit hohen Autoantik{\"o}rpertitern gegen NF-155 und ein Patient mit Anti-Pan-Neurofascin Autoantik{\"o}rpern konnten in der Studie detektiert werden. Der Patient mit Autoantik{\"o}rpern gegen alle drei Isoformen des Neurofascins und IgG3-Pr{\"a}dominanz zeigte die deutlichste Komplementablagerung. Bei drei Patienten/Patientinnen, die IgG1, IgG2 und IgG4 aufwiesen, war eine Aktivierung des Komplementsystems zu beobachten, w{\"a}hrend bei zwei Patienten mit pr{\"a}dominanter IgG4-Antik{\"o}rpersubklasse keine Komplementablagerung nachweisbar war. Bei Letzteren war eine Therapie mit IVIG in der Vorgeschichte erfolglos, w{\"a}hrend es bei zwei der Patienten/Patientinnen mit anderen IgG-Subklassen und Komplementbindung unter IVIG Therapie zu einer m{\"a}ßigen bis deutlichen Symptombesserung in der Akutphase kam. Eine Koinkubation mit IVIG f{\"u}hrte in den ELISA basierten und zellbasierten Versuchen zu keinem Effekt auf die Autoantik{\"o}rperbindung an das Zielantigen, jedoch zu einer deutlichen Reduktion der Antik{\"o}rper-vermittelten Komplementbindung. Diese Reduktion war sowohl bei Koinkuabtion von IVIG mit dem Komplementfaktor C1q als auch bei Pr{\"a}inkubation von IVIG vor C1q Gabe zu sehen. Bei zwei der Patienten/Patientinnen mit hohen Komplementablagerungen konnte eine erh{\"o}hte Zytotoxizit{\"a}t nachgewiesen werden, welche bei Zugabe von IVIG verringert wurde. Schlussfolgernd ist die Autoantik{\"o}rper-induzierte Komplementablagerung abh{\"a}ngig von der pr{\"a}dominanten IgG Subklasse. IVIG f{\"u}hrt zu einer deutlichen, konzentrationsabh{\"a}ngigen Reduktion der Komplementablagerung, sowie m{\"o}glicher zytotoxischer Effektorfunktionen wie die Zytolyse myelinisierter Schwannzellen oder Nervenaxonen. Dar{\"u}ber hinaus k{\"o}nnte die Subklassenanalyse von Erkrankten das Therapieansprechen auf IVIG vorhersagen und sollte daher eine wichtige Rolle in der Diagnostik der Nodo-Paranodopathie spielen. IVIG sowie andere {\"u}ber das Komplementsystem wirkende Therapeutika k{\"o}nnen in der Behandlung der schwer betroffenen Patienten/Patientinnen, insbesondere bei Anti-Pan-Neurofascin positiver Neuropathie, in Betracht gezogen werden.}, subject = {Komplement }, language = {de} } @phdthesis{BenKraiem2023, author = {Ben-Kraiem, Adel}, title = {Temporal characterization of the blood nerve barrier and specialized pro resolving mediators as therapeutic targets in neuropathy}, doi = {10.25972/OPUS-32079}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-320797}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2023}, abstract = {Abstract Neuropathic pain affects 6.9 to 10\% of the general population, arises from lesion or disease of the somatosensory nervous system and is still challenging to treat. Indeed, current treatments efficacy are relatively low and present strong side effects. To that extent, identifying new targets and developing new treatment strategies constitute a priority. The blood nerve barrier consists of the endoneurial micro-blood vessels and the perineurium sealed by tight junctions constituted of tight junction proteins such claudin-5 and claudin-1. As the functional blood nerve barrier allows nerve tissue protection from external elements and maintains homeostasis, a destabilization or a disruption leads to infiltration of immunocytes promoting neuroinflammation and increased inflammatory mediators that can sensitize nociceptors and enhance pain. Thus resealing the blood nerve barrier in case of neuropathic pain could be a possible treatment strategy. Specialised proresolving mediators such lipoxin A4 and resolvin D1 are small lipids that bind to receptors such the formylpeptide recptor 2 (FPR2) and resolve inflammation. Specially resolvin D1 as anti-inflammatory and analgesic properties. Thus using resolvin D1 or eventually other specialized proresolving mediators in neuropathic pain could reseal the blood nerve barrier and resolve neuropathic pain. The present work aimed to characterize the blood nerve barrier in a preclinical model of diabetic polyneuropathy and nerve injury (chronic constriction injury) and to identify specialized proresolving mediators that seal the blood nerve barrier and thereby alleviate neuropathic pain. In diabetic polyneuropathy, the blood nerve barrier is permeable only to small molecules, which is due to the loss of claudin-1 in the perineurium and a reduced number of blood vessel- associated macrophages. Interestingly, blood nerve barrier permeability did not occur until four to eight weeks after diabetes induction, whereas mechanical hyperalgesia was measurable as early as two weeks. This suggests a pain-maintaining rather than a pain-triggering role of the blood nerve barrier. In case of chronic constriction injury, a resolution process of both mechanical and thermal hyperalgesia occurs between three to six weeks after injury. Here, the blood nerve barrier is permeable to both small and large molecules from the beginning. The pain recovery process occurs primarily in parallel with the sealing of the endoneurial barrier to large molecules such as fibrinogen from the plasma and its degradation. Perineurium is still permeable nine weeks after injury. Metabolomic analyses show that especially precursors of Resolvin D1 as well as its receptor FPR2, are upregulated at the beginning of pain resolution. Application of resolvin D1 loaded nanoparticles or agonists of FPR2 at the injury site before the onset of pain resolution accelerates the process and fibrinogen is no longer detectable in the endoneurium. Depending on the nerve damage, the blood nerve barrier is affected to varying degrees. Direct mechanical trauma and the accompanying inflammation lead to a more pronounced and long-lasting permeability - independent hyperalgesia. Possibly permeability, at least for small molecules, is important for prolonged reparative processes. In the nerve, permeability of capillaries in particular depends not only on tight junctions but also on other cells: in addition to macrophages, pericytes could also have a sealing effect. Endoneurial fibrinogen triggers pain; the exact mechanism remains to be investigated. Resolvin-containing nanoparticles were particularly effective and could be used locally as they contain endogenous substances in non- toxic particles.}, language = {en} } @phdthesis{GoebneeKlaus2023, author = {G{\"o}b [n{\´e}e Klaus], Vanessa Aline Domenica}, title = {Pathomechanisms underlying ischemic stroke}, doi = {10.25972/OPUS-28672}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-286727}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2023}, abstract = {Every year, stroke affects over 100 million people worldwide and the number of cases continues to grow. Ischemic stroke is the most prevalent form of stroke and rapid restoration of blood flow is the primary therapeutic aim. However, recanalization might fail or reperfusion itself induces detrimental processes leading to infarct progression. Previous studies identified platelets and immune cells as drivers of this so-called ischemia/reperfusion (I/R) injury, establishing the concept of ischemic stroke as thrombo-inflammatory disease. Reduced cerebral blood flow despite recanalization promoted the hypothesis that thrombus formation within the cerebral microcirculation induces further tissue damage. The results presented in this thesis refute this: using complementary methodologies, it was shown that infarct growth precedes the occurrence of thrombi excluding them as I/R injury-underlying cause. Blood brain barrier disruption is one of the hallmarks of ischemic stroke pathology and was confirmed as early event during reperfusion injury in the second part of this study. Abolished platelet α-granule release protects mice from vascular leakage in the early reperfusion phase resulting in smaller infarcts. Using in vitro assays, platelet α-granule-derived PDGF-AB was identified as one factor contributing to blood-brain barrier disruption. In vivo visualization of platelet activation would provide important insights in the spatio-temporal context of platelet activation in stroke pathology. As platelet signaling results in elevated intracellular Ca2+ levels, this is an ideal readout. To overcome the limitations of chemical calcium indicators, a mouse line expressing an endogenous calcium reporter specifically in platelets and megakaryocytes was generated. Presence of the reporter did not interfere with platelet function, consequently these mice were characterized in in vivo and ex vivo models. Upon ischemic stroke, neutrophils are among the first cells that are recruited to the brain. Since for neutrophils both, beneficial and detrimental effects are described, their role was investigated within this thesis. Neither neutrophil depletion nor absence of NADPH-dependent ROS production (Ncf-/- mice) affected stroke outcome. In contrast, abolished NET-formation in Pad4-/- mice resulted in reduced infarct sizes, revealing detrimental effects of NETosis in the context of ischemic stroke, which might become a potential therapeutic target. Cerebral venous (sinus) thrombosis, CV(S)T is a rare type of stroke with mainly idiopathic onset. Whereas for arterial thrombosis a critical contribution of platelets is known and widely accepted, for venous thrombosis this is less clear but considered more and more. In the last part of this thesis, it was shown that fab-fragments of the anti-CLEC-2 antibody INU1 trigger pathological platelet activation in vivo, resulting in foudroyant CVT accompanied by heavy neurological symptoms. Using this novel animal model for CVT, cooperative signaling of the two platelet receptors CLEC-2 and GPIIb/IIIa was revealed as major trigger of CVT and potential target for treatment.}, subject = {Schlaganfall}, language = {en} } @phdthesis{Seiler2023, author = {Seiler, Jonas}, title = {Die Expression des Vitamin-D-Rezeptors und der 24-Hydroxylase in Knochenmetastasen unterschiedlicher Entit{\"a}t}, doi = {10.25972/OPUS-32182}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-321827}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2023}, abstract = {Knochenmetastasen sind unter den drei h{\"a}ufigsten Manifestationsorten metastatischer Absiedelungen von fortgeschrittenen Tumorerkrankungen. Dabei sind insbesondere Patientinnen und Patienten mit Prostata- und Mammakarzinom von Knochenmetastasen betroffen. Diese Knochenmetastasen f{\"u}hren h{\"a}ufig zu einer deutlichen Verschlechterung der Lebensqualit{\"a}t und zu einer Begrenzung der Therapieoptionen auf lediglich palliative Ans{\"a}tze. Die biologisch aktive Form von Vitamin D3, 1,25(OH)2-Vitamin D3, zeigt in pr{\"a}klinischen Studien antiproliferative und differenzierende Effekte auf Tumorzellen (101, 102, 104), die haups{\"a}chlich durch die Bindung an den Vitamin D-Rezeptor (VDR) vermittelt werden. Dar{\"u}berhinaus konnte pr{\"a}klinisch gezeigt werden, dass eine niedrige Expression des VDRs, ligandenunabh{\"a}ngig, die Knochenmetastasierung und das Tumorwachstum beg{\"u}nstigt (118). Eine niedrige VDR-Expression ist in Prim{\"a}rtumoren in klinischen Studien mit aggressiven Tumoreigenschaften assoziiert (111, 113, 115) und kann zudem mit einer erh{\"o}hten/fr{\"u}heren oss{\"a}ren Metastasierung einhergehen (167). Zudem gibt es Hinweise auf einen dysregulierten 1,25(OH)2-Vitamin D3-Katabolismus durch eine erh{\"o}hte Expression des 1,25(OH)2-Vitamin D3 katabolisierenden Enzyms CYP24A1/24-Hydroxylase in prim{\"a}rem Tumorzellen (70, 121, 122). Durch die Untersuchungen der Prim{\"a}rtumoren ist damit zu hypothetisieren, dass die Expression des VDRs und von CYP24A1 bei der Tumorprogression und Knochenmetastasierung von Bedeutung sein k{\"o}nnte. Entsprechende Untersuchungen des VDRs und der 24-Hydroxylase in Knochenmetastasen fehlen allerdings. Deshalb wurde in dieser Arbeit die Expression des VDRs und von CYP24A1 in Knochenmetastasen unterschiedlicher Prim{\"a}rtumoren von 66 Patientinnen und Patienten untersucht und m{\"o}gliche Assoziationen mit aggressiven Tumoreigenschaften analysiert. Der VDR konnte sowohl im Zytoplasma als auch im Nukleus nachgewiesen werden, w{\"a}hrend CYP24A1 nur im Zytoplasma lokalisiert war. Dabei wiesen insgesamt 71 \% der Knochenmetastasen eine hohe VDR-Expression im Nukleus und 56 \% im Zytoplasma auf. 59 \% der Knochenmetastasen wiesen eine hohe Expression des VDRs insgesamt auf. CYP24A1 war ebenso in 59 \% der Knochenmetastasen hoch exprimiert. Bei der Auswertung des Zusammenhangs zwischen den TNM-Stadien und des Gradings zeigte sich ein nicht signifikanter Trend von schlecht differenzierten Tumoren hin zu einer niedrigeren nukle{\"a}ren VDR-Expression (p=0.07, siehe Abbildung 33). Bez{\"u}glich der T-Stadien zeigten sich keine Unterschiede der Expression des VDRs und von CYP24A1 in den Knochenmetastasen zwischen lokal fortgeschrittenen und kleinen Prim{\"a}rtumoren. Weiterhin hatten Patientinnen und Patienten mit Lymphknotenmetastasen tendenziell eine verminderte VDR- und auch CYP24A1-Expression in den Knochenmetastasen im Vergleich zu Patienten und Patientinnen ohne Lymphknotenmetastasen (pVDR=0.15, pCYP24A1=0.06, siehe Abbildung 35). Außerdem hatten Patientinnen und Patienten mit multiple metastasierten Tumoren eine signifikant niedrigere nukle{\"a}re VDR- und auch CYP24A1-Expression im Vergleich zu Patientinnen und Patienten mit ausschließlich oss{\"a}rer Metastasierung (pVDR=0.03, pCYP24A1=0.01, Abbildung 36). Die Proteinexpression des VDRs- und von CYP24A1 korrelierten signifikant (p=0.001). Somit konnte mit dieser Arbeit die Proteinexpression des VDRs und von CYP24A1 in Knochenmetastasen durch Immunhistologie nachgewiesen werden. Insgesamt wurde der VDR und CYP24A1 von Knochenmetastasen diverser Entit{\"a}t unterschiedlich stark exprimiert. Jedoch k{\"o}nnten insbesondere Patienten mit VDR-exprimierenden Knochenmetastasen von einer Vitamin D3-Supplementierung profitieren, die h{\"a}ufig einen 25-OH-Vitamin D3 Mangel zeigen (165, 166). Ebenso k{\"o}nnte eine Untersuchung auf einen niedrigen VDR-Status in Prim{\"a}rtumoren dabei helfen, Krebspatienten mit einem hohen Metastasierungsrisiko zu identifizieren. Allerdings sind weitere und gr{\"o}ßere Studien inbesondere mit Evaluation des gesamten Vitamin D-Metabolismus und -Signalwegs notwendig, um diesen Zusammenhang weiter zu untersuchen.}, subject = {Vitamin D3}, language = {de} } @phdthesis{Lauruschkat2023, author = {Lauruschkat, Chris David}, title = {Entwicklung funktioneller Immunassays zur Detektion der humanen Immunantwort auf das opportunistische Pathogen \(Aspergillus\) \(fumigatus\)}, doi = {10.25972/OPUS-31983}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-319835}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2023}, abstract = {Aspergillus fumigatus ist ein opportunistisches fungales Humanpathogen, das ein breites Erkrankungsspektrum von der invasiven Aspergillose (IA) in immunkompromittierten Patienten bis zu einer Reihe von Hypersensitivit{\"a}tserkrankungen in immunkompetenten Individuen hervorrufen kann. Die Diagnostik f{\"u}r A. fumigatus assoziierte Krankheitsbilder beruht auf mehreren diagnostischen Tests, die auch in ihrer Kombination oft zu sp{\"a}ten und unzuverl{\"a}ssigen Diagnosen f{\"u}hren, was wiederum zu einer suboptimalen Patientenversorgung, erh{\"o}hter Mortalit{\"a}t und gesteigerten Kosten f{\"u}r das Gesundheitssystem f{\"u}hrt. Es besteht daher die unbedingte Notwendigkeit, neue und bessere diagnostische Tests zur Detektion von A. fumigatus zu entwickeln. T Zell Assays sind vielversprechende, innovative diagnostische Tests, die bereits f{\"u}r andere Infektionskrankheiten in der Routinediagnostik eingesetzt werden. Erste Versuche wurden bereits unternommen, diese Assays auch f{\"u}r A. fumigatus assoziierte Erkrankungen einzusetzen. Die g{\"a}ngigsten, auf mononukle{\"a}ren Zellen des peripheren Blutes (PBMC)-basierten T Zell Assays sind der Enzyme-linked Immunosorbent Assay (ELISA), Enzyme-linked Immuno Spot Assay (ELISPOT) und die Durchflusszytometrie. Das Ziel dieser Dissertation war die Entwicklung eines klinisch einsetzbaren T-Zell-Assays f{\"u}r A. fumigatus assoziierte Erkrankungen. Die in der Literatur beschriebenen Assays zeigten in unseren Experimenten bei der Anwendung f{\"u}r mykologische Fragestellungen eine hohe Suszeptibilit{\"a}t gegen{\"u}ber bereits kurzen pr{\"a}analytischen Lagerzeiten und Krykonservierung, was einen klinischen Einsatz erschwerte. Wir entwickelten deshalb einen Vollblut basierten ELISA (VB-ELISA) mit dualer Kostimulation (α-CD28 und α-CD49d), hoher Reproduzierbarkeit und verbesserter Robustheit gegen{\"u}ber pr{\"a}analytischen Einflussfaktoren. Der VB ELISA konnte hohe Differenzen zwischen Typ 1 T Helferzellen (Th1) , Th2 und Th17 Zytokinkonzentrationen bei Patienten mit Aspergillus assoziierten Hypersensitivit{\"a}tskrankheitsbildern und Kontrollpatienten feststellen. Um zu testen, ob dieser Anstieg auf die Erkrankung zur{\"u}ckzuf{\"u}hren ist oder auch bei hoher Aspergillus-Umweltexposition vorzufinden ist, wurde der Assay in Aspergillus exponierten gesunden {\"o}kologischen Landwirten getestet. In dieser Gruppe fanden wir ebenfalls eine erh{\"o}hte Th1 und Th2 Expansion und Zytokinsekretion gegen{\"u}ber gesunden Kontrollspendern, jedoch wurde nur ein geringer Anstieg des Th17 Signalzytokines IL-17 detektiert. Die Detektion von IL-17 im VB-ELISA in Kombination mit anderen Zytokinmarkern ist daher ein vielversprechender Biomarker f{\"u}r die Diagnose von A. fumigatus assoziierten Hypersensitivit{\"a}tserkrankungen. Neben diesen Hypersensitivit{\"a}tserkrankungen haben wir den VB-ELISA auch in immunkompromittierten Patienten nach allogener Stammzelltransplantation (alloSZT), einer Hochrisikogruppe f{\"u}r die IA und die durch das humane Cytomegalovirus (HCMV) ausgel{\"o}ste Zytomegalie, evaluiert. W{\"a}hrend in unserer monozentrischen Pilotstudie aufgrund der geringen Inzidenz keine Evaluation an IA-Patienten erfolgen konnte, wurde mittels VB-ELISA eine hohe Konkordanz der HCMV-spezifischen T Zell Antwort mit der HCMV Serologie sowie eine vergleichbare Leistung zum ELISPOT, dem am h{\"a}ufigsten eingestetzen Assay f{\"u}r diese Fragestellung, festgestellt. Zusammenfassend haben wir mit dem VB ELISA einen vielversprechenden und breitfl{\"a}chig im Spektrum A. fumigatus assoziierter Erkrankungen einsetzbaren T Zell Assay entwickelt, der in der Zukunft in großen Studien mit klar definierten Patientenkohorten getestet werden sollte. Auf Grund von Daten aus Folgestudien, die auf dieser Arbeit basieren, ist des Weiteren davon auszugehen, dass der VB-ELISA auf Grund seiner St{\"a}rken potenziell in einer Vielzahl von Anwendungsgebieten und Pathogenen (eine Folgestudie mit SARS-CoV-2 wurde vor kurzem ver{\"o}ffentlicht) universell eingesetzt werden kann. Neben der Immundiagnostik f{\"u}r diverse Infektionserkrankungen k{\"o}nnte der Assay außerdem f{\"u}r T Zell Antworten auf Vakzinierungen und Immuntherapien, in vivo Experimente und in vitro Toxizit{\"a}tstests verwendet werden.}, subject = {Immunologie}, language = {de} } @phdthesis{Forster2023, author = {Forster, Andr{\´e}}, title = {Targeting Temporally Stable Vulnerability Factors in the Prediction of Long-Term Courses of Depression: Diagnostic Considerations and Therapeutic Protocols Based on Transcranial Ultrasonic Neuromodulation of Endophenotypes}, doi = {10.25972/OPUS-27906}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-279065}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2023}, abstract = {Depressive disorders represent one of the main sources for the loss of healthy years of life. One of the reasons for this circumstance is the recurrent course of these disorders, which can be interrupted by current therapeutic approaches, especially in the shortterm, but seem to be maintained at least in part in the long-term. Subsequently, on one hand, this thesis deals with methodological measurement issues in the longitudinal prediction of depressive courses. On the other hand, it addresses two currently discussed neuroscience-based treatment approaches, which are investigated experimentally in a basic-psychological manner and reviewed in the light of their potential to translate results to the application in patient care. These two approaches each address potential mechanisms that may negatively impact long-term disease trajectories: First, stable endophenotypes for vulnerability factors that could regain control over the organism and reactivate maladaptive experiences, or behaviors with increasing temporal distance from therapeutic methods are focused on. In the studies presented, these were influenced by a recently rediscovered method of neuromodulation (transcranial low-intensity focused ultrasound) which is discussed in light of its unique capability to address even deepest, subcortical regions at a high spatial resolution. Lastly, as a second approach, an experimental design for the use of reconsolidation interference is presented, which could provide a first insight into the applicability of corresponding protocols in the field of depressive disorders and thus contribute to the modification, instead of inhibition, of already mentioned endophenotypes. In sum, methodological considerations for monitoring and predicting long-term courses of depression are deducted before two approaches are discussed that could potentially exert positive influences on the recurrent nature of depressive symptoms on their own, in combination with each other, or as augmentation for existing therapeutic procedures.}, subject = {Depression}, language = {en} } @phdthesis{Breil2023, author = {Breil, Christina}, title = {Look at me and I will feel you: eye contact and social understandig}, doi = {10.25972/OPUS-27802}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-278021}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2023}, abstract = {One of the features that defines humans as extraordinarily social beings is their striking susceptibility to the gaze of others. The research reported in this dissertation was undertaken to advance our understanding of the role of gaze cues in low-level attentional and higher-order cognitive processes. In particular, effects of gaze were examined with regard to three aspects of human cognition: (1) social attention, (2) social interaction and (3) social understanding. Chapter 1 consists of three manuscripts that investigate the boundary conditions of attention capture by direct gaze and how gaze direction is integrated with facial context information. Manuscript 1 and 2 suggest two necessary requirements for attention capture by direct gaze: a meaningful holistic facial context and sharp foveal vision, respectively. Manuscript 3 shows approach/avoidance-congruency effects between gaze direction and emotion expression on attention. Chapter 2 of this dissertation explores the role of gaze in more naturalistic social scenarios. Manuscript 4 demonstrates that gaze behavior during a conversation shapes our perception of another person. Manuscript 5 builds on these findings by showing that these perceptions define our willingness to act in a prosocial way towards our interaction partner. Finally, chapter 3 adopts a broader perspective on social cognition research with a special focus on methodological aspects. Manuscript 6 is a review highlighting the significance of methodological aspects in social cognition research and stressing the importance of sophisticated decisions on task and stimulus materials. Manuscript 7 introduces a new instrument for the assessment of social understanding in adolescents. Initial application in a young sample group indicates that an understanding of another person's mental states is a capacity that is still developing throughout adolescence. Both manuscripts of this final chapter include eye tracking data that suggest a relationship between gaze behavior and social understanding, a finding that further emphasizes the complex and multifaceted nature of social cognition. I conclude from the findings of this dissertation that research can benefit from adopting a broad view in terms of methodological as well as temporal aspects in order to capture human social cognition in its entirety.}, subject = {Blick}, language = {en} } @phdthesis{Nemec2023, author = {Nemec, Katarina}, title = {Modulation of parathyroid hormone 1 receptor (PTH1R) signaling by receptor activity-modifying proteins (RAMPs)}, doi = {10.25972/OPUS-28858}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-288588}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2023}, abstract = {The receptor activity-modifying proteins (RAMPs) are ubiquitously expressed membrane proteins that interact with several G protein-coupled receptors (GPCRs), the largest and pharmacologically most important family of cell surface receptors. RAMPs can regulate GPCR function in terms of ligand-binding, G-protein coupling, downstream signaling, trafficking, and recycling. The integrity of their interactions translates to many physiological functions or pathological conditions. Regardless of numerous reports on its essential importance for cell biology and pivotal role in (patho-)physiology, the molecular mechanism of how RAMPs modulate GPCR activation remained largely elusive. This work presents new insights that add to the common understanding of the allosteric regulation of receptor activation and will help interpret how accessory proteins - RAMPs - modulate activation dynamics and how this affects the fundamental aspects of cellular signaling. Using a prototypical class B GPCR, the parathyroid hormone 1 receptor (PTH1R) in the form of advanced genetically encoded optical biosensors, I examined RAMP's impact on the PTH1R activation and signaling in intact cells. A panel of single-cell FRET and confocal microscopy experiments as well canonical and non-canonical functional assays were performed to get a holistic picture of the signaling initiation and transduction of that clinically and therapeutically relevant GPCR. Finally, structural modeling was performed to add molecular mechanistic details to that novel art of modulation. I describe here that RAMP2 acts as a specific allosteric modulator of PTH1R, shifting PTH1R to a unique pre-activated state that permits faster activation in a ligand-specific manner. Moreover, RAMP2 modulates PTH1R downstream signaling in an agonist-dependent manner, most notably increasing the PTH-mediated Gi3 signaling sensitivity and kinetics of cAMP accumulation. Additionally, RAMP2 increases PTH- and PTHrP-triggered β-arrestin2 recruitment to PTH1R and modulates cytosolic ERK1/2 phosphorylation. Structural homology modeling shows that structural motifs governing GPCR-RAMP interaction originate in allosteric hotspots and rationalize functional modulation. Moreover, to interpret the broader role of RAMP's modulation in GPCRs pharmacology, different fluorescent tools to investigate RAMP's spatial organization were developed, and novel conformational biosensors for class B GPCRs were engineered. Lastly, a high throughput assay is proposed and prototyped to expand the repertoire of RAMPs or other membrane protein interactors. These data uncover the critical role of RAMPs in GPCR activation and signaling and set up a novel platform for studying GPCR modulation. Furthermore, these insights may provide a new venue for precise modulation of GPCR function and advanced drug design.}, subject = {G-Protein gekoppelter Rezeptor}, language = {en} } @phdthesis{Sivarajan2023, author = {Sivarajan, Rinu}, title = {Engineered Human Airway Mucosa for Modelling Respiratory Infections: Characterisation and Applications}, doi = {10.25972/OPUS-32241}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-322414}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2023}, abstract = {Respiratory infections are a significant health concern worldwide, and the airway epithelium plays a crucial role in regulating airway function and modulating inflammatory processes. However, most studies on respiratory infections have used cell lines or animal models, which may not accurately reflect native physiological conditions, especially regarding human pathogens. We generated human nasal mucosa (hNM) and tracheobronchial mucosa (hTM) models to address this issue using primary human airway epithelial cells and fibroblasts. We characterised these human airway tissue models (hAM) using high speed video microscopy, single cell RNA sequencing, immunofluorescence staining, and ultrastructural analyses that revealed their complexity and cellular heterogeneity. We demonstrated that Bordetella pertussis virulence factor adenylate cyclase toxin (CyaA) elevated the intracellular production of cyclic adenosine monophosphate (cAMP) and secretion of interleukin (IL) 6, IL 8, and human beta defensin 2 (HBD2). In addition, we compared the responses of the tissue models from two different anatomical sites (the upper and lower respiratory mucosa) and are the first to report such differential susceptibility towards CyaA using 3D primary airway cell derivedmodels. The effect of toxin treatment on the epithelial barrier integrity of the tissue models was assessed by measuring the flux of fluorescein isothiocyanate (FITC)-conjugated dextran across the models. Though we observed a cell type specific response with respect to intracellular cAMP production and IL 6, IL 8, and HBD2 secretion in the models treated with CyaA on the apical side, the epithelial membrane barrier integrity was not compromised. In addition to toxin studies, using these characterised models, we established viral infection studies for Influenza A (IAV), Respiratory Syncytial Virus subtype B (RSV), and severe acute respiratory syndrome coronavirus 2. We visualised the morphological consequences of the viral infection using ultrastructural analysis and immunofluorescence. We verified the effective infection in hAM by measuring the viral RNA using RTqPCR and detected elevated cytokine levels in response to infection using biochemical assays. In contrast to cell lines, studies on viral infection using hAM demonstrated that infected areas were localized to specific regions. This led to the formation of infection hotspots, which were more likely to occur when models derived from different donors were infected separately with all three viruses. IAV infected tissue models replicate the clinical findings of H1N1 infection, such as mucus hypersecretion, cytokine release, and infection-associated epithelial cell damage.Finally, we paved the steps towards understanding the impact of IAV infection on disease models. We generated hTM from biopsies obtained from chronic obstructive pulmonary disease (COPD) patients. As a model to study the impact of COPD on respiratory infections, considering the increase in COPD cases in the past decade and the continued predicted increase in the future. We established the IAV infection protocol to capture the early infection signatures in non-COPD and COPD conditions using scRNA-seq. We investigated the infection kinetics of IAV (H1N1-clinical isolate) in hTM and found that viruses were actively released approximately 24 hours post infection. The scRNA-seq data from the hTM derived from non-COPD and COPD patients, revealed lower levels of SCGB1A1 (club cell marker) gene expression in the COPD-control group compared to the non-COPD control group, consistent with previous clinical studies. Furthermore, we observed that IAV infection elevated SCGB1A1 gene expression especially in secretory cells of both the COPD and non COPD groups. This may imply the role of club cells as early responders during IAV infection providing epithelial repair, regeneration, and resistance to spread of infection. This is the first study to address the molecular diversity in COPD and non-COPD disease models infected with IAV investigating the early response (6 h) of specific cell types in the human lower airways towards infection using scRNA-seq. These findings highlight the potential interplay between COPD, IAV infection, and altered vulnerability to other viral infections and respiratory illnesses making the hAM applicable for addressing more specific research questions and validating potential targets, such as SCGB1A1 targeted therapy for chronic lung diseases. Our findings demonstrate the potential of the hNM and hTM for investigating respiratory infections, innate immune responses, and trained immunity in non-immune cells. Our experiments show that hAM may represent a more accurate representation of the native physiological condition and improve our understanding of the disease mechanisms. Furthermore, these models promote non-animal research as they replicate clinical findings. We can further increase their complexity by incorporating dynamic flow systems and immune cells catered to the research question.}, subject = {Atemwege}, language = {en} } @phdthesis{Nirchal2024, author = {Nirchal, Naveen Kumar}, title = {Mechanistische Regulierung des gastro{\"o}sophagealen {\"U}bergangs und die Rolle der Retins{\"a}ure bei der Entwicklung des Barrett-{\"O}sophagus}, doi = {10.25972/OPUS-31155}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-311556}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2024}, abstract = {Der gastro{\"o}sophageale {\"U}bergang (GEJ), der die Region abgrenzt, in der der distale {\"O}sophagus auf die proximale Magenregion trifft, ist bekannt f{\"u}r die Entwicklung pathologischer Zust{\"a}nde, wie Metaplasie und Adenokarzinom des {\"O}sophagus (EAC). Es ist wichtig, die Mechanismen der Entwicklungsstadien zu verstehen, die zu EAC f{\"u}hren, da die Inzidenzrate von EAC in den letzten 4 Jahrzehnten um das 7-fache gestiegen ist und die Gesamt{\"u}berlebensrate von 5 Jahren 18,4 \% betr{\"a}gt. In den meisten F{\"a}llenwird die Diagnose im fortgeschrittenen Stadium ohne vorherige Symptome erstellt. Der Hauptvorl{\"a}ufer f{\"u}r die Entwicklung von EAC ist eine pr{\"a}maligne Vorstufe namens Barrett-{\"O}sophagus (BE). BE ist der metaplastische Zustand, bei dem das mehrschichtige Plattenepithel des nativen {\"O}sophagus durch ein spezialisiertes einschichtiges S{\"a}ulenepithel ersetzt wird, das die molekularen Eigenschaften des Magen- sowie des Darmepithels aufweist. Zu den wichtigsten Risikofaktoren f{\"u}r die Entwicklung von BE geh{\"o}ren die chronische gastro{\"o}sophageale Refluxkrankheit (GERD), eine ver{\"a}nderte Mikrobiota und ver{\"a}nderte Retins{\"a}ure-Signalwege (RA). Es ist unklar, welche Zelle der Ursprung f{\"u}r BE ist, da es keine eindeutigen Beweisen f{\"u}r den Prozess der BE-Initiation gibt. In dieser Arbeit habe ich untersucht, wie die GEJ-Hom{\"o}ostase in gesundem Gewebe durch stammzellregulatorische Morphogene aufrechterhalten wird, welche Rolle der Vitamin-A (RA-Signal{\"u}bertragung) spieltund wie ihre Ver{\"a}nderung zur BE-Entwicklung beitr{\"a}gt. Im ersten Teil meiner Dissertation habe ich anhand von Einzelmolek{\"u}l-RNA in situ-Hybridisierung und Immunhistochemie eindeutig das Vorhandensein von zwei Arten von Epithelzellen nachweisen k{\"o}nnen, dem Plattenepithel in der Speiser{\"o}hre und dem S{\"a}ulenepithel imMagenbereich des GEJ. Mittels Abstammungsanalysen im Mausmodell konnte ich zeigen, dass die Epithelzellen des {\"O}sophagus und des Magens von zwei verschiedenen epithelialen Stammzelllinien imGEJ abstammen. Die Grenze zwischen Plattenepithel und S{\"a}ulenepithelzellen im SCJ des GEJ wirddurch gegens{\"a}tzliche Wnt-Mikroumgebungen streng reguliert. Plattenepithelstammzellen des {\"O}sophagus werden durch das Wnt-hemmende Mikroumgebungssignal aufrechterhalten, w{\"a}hrend Magens{\"a}ulenepithelzellen durch das Wnt-aktivierende Signal aus dem Stromakompartiment erhalten werden. Ich habe die in vivo Erhaltung der Epithelstammzellen des GEJ mit Hilfe eines in vitro Epithel-3D-Organoidkulturmodells rekonstruiert. Das Wachstum und die Vermehrung von Magens{\"a}ulenepithel-Organoiden h{\"a}ngen von Wnt-Wachstumsfaktoren ab, w{\"a}hrend das Wachstum von Plattenepithel-Organoiden von Wnt-defizienten Kulturbedingungen abh{\"a}ngt. Dar{\"u}ber hinaus zeigte die Einzelzell-RNA-Sequenzanalyse (scRNA-seq) der aus Organoiden gewonnenenEpithelzellen, dass der nicht-kanonische Wnt/ planar cell polarity (PCP) Signalweg an der Regulierung der Plattenepithelzellen beteiligt ist. Im Gegensatz dazu werden s{\"a}ulenf{\"o}rmige Magenepithelzellen durch den kanonischen Wnt/beta-Catenin- und den nicht-kanonischen Wnt/Ca2+-Weg reguliert. Meine Daten zeigen, dass die SCJ-Epithelzellen, die am GEJ verschmelzen, durch entgegengesetzte stromale Wnt-Faktoren und unterschiedliche Wnt-Weg-Signalee in den Epithelzellen reguliert werden. Im zweiten Teil der Dissertation untersuchte ich die Rolle der bioaktiven Vitamin A Verbindung RA auf {\"O}sophagus- und Magenepithelstammzellen. Die In-vitro-Behandlung von epithelialen Organoiden der Speiser{\"o}hre und des Magens mitRA oder seinem pharmakologischen Inhibitors BMS 493 zeigte, dass jeder Zelltyp unterschiedlich reguliert wurde. Ich beobachtete, dass eine verst{\"a}rkte RA die Differenzierung von Stammzellen und den Verlust der Schichtung f{\"o}rderte, w{\"a}hrend die RA-Hemmung zu einer verst{\"a}rkten Stammzellbildung und Regeneration im mehrschichtigen Epithel der Speiser{\"o}hre f{\"u}hrte. Im Gegensatz zur Speiser{\"o}hre ist der RA-Signalweg in Magen-Organoiden aktiv, und die Hemmung von RA hat ein reduziertes Wachstum von Magen-Organoiden. Globale transkriptomische Daten und scRNA-seq-Daten zeigten, dass derRA-Signalweg einen Ruheph{\"a}notyp in den {\"O}sophaguszellen induziert. Dagegen f{\"u}hrt das Fehlen von RA in Magenepithelzellen zur Expression von Genen, die mit BE assoziiert sind. Daher isteine r{\"a}umlich definierte Regulation der Wnt- und Retins{\"a}ure-Signalgebung amGEJ entscheidend f{\"u}r eine gesunde Hom{\"o}ostase, und ihre St{\"o}rung f{\"u}hrt zur Entwicklung von Krankheiten.}, subject = {Retinoes{\"a}ure}, language = {en} } @phdthesis{Scheiner2024, author = {Scheiner, Christin}, title = {Vulnerability in adolescence: prevalence, pandemic impact and prevention}, doi = {10.25972/OPUS-35164}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-351644}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2024}, abstract = {This compilation focuses on adolescent mental disorders and their prevention. It comprises three distinct studies, each contributing to a deeper understanding of this critical topic. This work addresses a critical gap in the understanding of, and approach to, adolescent mental health, and as a result reveals a critically important and urgently needed policy implication for action. The thematic structure of these studies begins with an examination of the epidemiology of child and adolescent mental disorders. Baseline data were collected from N = 877 adolescents with a mean age of 12.43 years (SD = 0.65). Mental health problems, such as depressive symptoms, non-suicidal self-injury, suicidal ideation, symptoms of eating disorders, and gender differences, are thoroughly examined. Results revealed a significant portion of our sample displaying mental health problems as early as the 6th and 7th grades, with girls generally being more affected than boys. The findings underscore the importance of early adolescence in the emergence of mental health problems and thereby emphasize the need for preventive measures. Moving beyond prevalence estimates, the compilation delves into the etiology of these disorders, exploring their potential correlation with a COVID-19 infection. Understanding the early signs and risk factors is crucial for timely support. While numerous studies have investigated potential risk and protective factors during the pandemic, our focus shifts to adolescents' coping when an infection with the virus was involved (N = 2,154, M = 12.31, SD = 0.67). We hypothesized that students infected or with close family members infected, would exhibit an increased psychopathology and a decreased functioning of protective factors such as self-efficacy or self-esteem. We found no connection between infection and the mental health status within our sample, but protective factors and mental well-being were positively associated. Thus, universal primary prevention appears to be the preferred approach for promoting mental health. Lastly, the compilation introduces LessStress, a noteworthy contribution to more evidence-based prevention programs. This universal approach is designed to reduce stress in schools, accompanied by a cluster-randomized trial to evaluate its effectiveness (estimated sample size N = 1,894). Existing studies have demonstrated the effectiveness of stress prevention, leading us to introduce a short and easy-to-implement prevention program. There is positive evidence for one-lesson interventions in schools for promoting well-being and health behaviors among adolescents. LessStress is designed based on a life skills approach that not only imparts psychoeducational content but also teaches skills relevant to everyday life and directly applicable. Throughout these studies, a common thread emerges: the pressing need to address mental disorders during childhood and adolescence. These formative years play a pivotal role in the development of mental health problems. These formative years play a crucial role in the development of mental health problems. They highlight the importance of epidemiological data collection and analysis based on the latest models to develop prevention interventions that are not only effective but also reach young people on a global level.}, subject = {Jugend}, language = {en} } @phdthesis{Knorr2024, author = {Knorr, Susanne}, title = {Pathophysiology of early-onset isolated dystonia in a DYT-TOR1A rat model with trauma-induced dystonia-like movements}, doi = {10.25972/OPUS-20609}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-206096}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2024}, abstract = {Early-onset torsion dystonia (DYT-TOR1A, DYT1) is an inherited hyperkinetic movement disorder caused by a mutation of the TOR1A gene encoding the torsinA protein. DYT-TOR1A is characterized as a network disorder of the central nervous system (CNS), including predominantly the cortico-basal ganglia-thalamo-cortical loop resulting in a severe generalized dystonic phenotype. The pathophysiology of DYTTOR1A is not fully understood. Molecular levels up to large-scale network levels of the CNS are suggested to be affected in the pathophysiology of DYT-TOR1A. The reduced penetrance of 30\% - 40\% indicates a gene-environmental interaction, hypothesized as "second hit". The lack of appropriate and phenotypic DYT-TOR1A animal models encouraged us to verify the "second hit" hypothesis through a unilateral peripheral nerve trauma of the sciatic nerve in a transgenic asymptomatic DYT-TOR1A rat model (∆ETorA), overexpressing the human mutated torsinA protein. In a multiscale approach, this animal model was characterized phenotypically and pathophysiologically. Nerve-injured ∆ETorA rats revealed dystonia-like movements (DLM) with a partially generalized phenotype. A physiomarker of human dystonia, describing increased theta oscillation in the globus pallidus internus (GPi), was found in the entopeduncular nucleus (EP), the rodent equivalent to the human GPi, of nerve-injured ∆ETorA rats. Altered oscillation patterns were also observed in the primary motor cortex. Highfrequency stimulation (HFS) of the EP reduced DLM and modulated altered oscillatory activity in the EP and primary motor cortex in nerve-injured ∆ETorA rats. Moreover, the dopaminergic system in ∆ETorA rats demonstrated a significant increased striatal dopamine release and dopamine turnover. Whole transcriptome analysis revealed differentially expressed genes of the circadian clock and the energy metabolism, thereby pointing towards novel, putative pathways in the pathophysiology of DYTTOR1A dystonia. In summary, peripheral nerve trauma can trigger DLM in genetically predisposed asymptomatic ΔETorA rats leading to neurobiological alteration in the central motor network on multiple levels and thereby supporting the "second hit" hypothesis. This novel symptomatic DYT-TOR1A rat model, based on a DYT-TOR1A genetic background, may prove as a valuable chance for DYT-TOR1A dystonia, to further investigate the pathomechanism in more detail and to establish new treatment strategies.}, subject = {Dystonie}, language = {en} } @phdthesis{PenaMosca2024, author = {Pe{\~n}a Mosca, Mar{\´i}a Josefina}, title = {Local regulation of T-cell immunity in the intestinal mucosa}, doi = {10.25972/OPUS-35266}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-352665}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2024}, abstract = {After priming in Peyer's patches (PPs) and mesenteric lymph nodes (mLN) T- cells infiltrate the intestine through lymphatic draining and homing through the bloodstream. However, we found that in mouse models of acute graft-versus-host disease (GvHD), a subset of alloreactive T-cells directly migrates from PPs to the adjacent intestinal lamina propria (LP), bypassing the normal lymphatic drainage and vascular trafficking routes. Notably, this direct migration occurred in irradiated and unirradiated GvHD models, indicating that irradiation is not a prerequisite for this observed behavior. Next, we established a method termed serial intravascular staining (SIVS) in mouse models to systematically investigate the trafficking and migration of donor T- cells in the early stages of acute GvHD initiation. We found that the direct migration of T-cells from PPs to LP resulted in faster recruitment of cells after allogeneic hematopoietic cell transplantation (allo-HCT). These directly migrating T-cells were found to be in an activated and proliferative state, exhibiting a TH1/TH17-like phenotype and producing cytokines such as IFN-γ and TNF-α. Furthermore, we observed that the directly migrating alloreactive T-cells expressed specific integrins (α4+, αE+) and chemokine receptors (CxCR3+, CCR5+, and CCR9+). Surprisingly, blocking these integrins and chemokine-coupled receptors did not hinder the direct migration of T- cells from PPs to LP, suggesting the involvement of alternative mechanisms. Previous experiments ruled out the involvement of S1PR1 and topographical features of macrophages, leading us to hypothesize that mediators of cytoskeleton reorganization, such as Coro1a, Dock2, or Cdc42, may play a role in this unique migration process. Additionally, we observed that directly migrating T-cells created a local inflammatory microenvironment, which attracts circulating T-cells. Histological analysis confirmed that alloreactive PPs-derived T-cells and bloodborne T-cells colocalized. We employed two experimental approaches, including either photoconversion of T-cells in PPs or direct transfer of activated T-cells into the vasculature, to demonstrate this colocalization. We hypothesize that cytokines released by migrating T-cells, such as IFN-γ and TNF-α, may play a role in recruiting T-cells from the vasculature, as inhibiting chemokine-coupled receptors did not impair recruitment.}, subject = {T-Lymphozyt}, language = {en} } @phdthesis{RombachgebGrosso2024, author = {Rombach [geb. Grosso], Franziska}, title = {Der Interaktionsrezeptor des Masernvirus auf h{\"a}matopoetischen Zellen}, doi = {10.25972/OPUS-35339}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-353394}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2024}, abstract = {Das Masernvirus (MV) kann in Erkrankten eine schwere, langanhaltende Immunsuppression verursachen, wodurch Infektionen mit opportunistischen Pathogenen beg{\"u}nstigt werden. Diese basiert auf einer Paralyse der h{\"a}matopoetischen Zellen, welche das Virus durch Kontakt eines viralen Glykoproteinkomplexes zu einem unbekannten RezeptorX auf der Zell- Oberfl{\"a}che induzieren kann. Kerncharakterisitika hiervon sind unter anderem die Herabregulation der Akt-Kinase-Phosphorylierung, die Inhibition der zellul{\"a}ren Proliferation und die Aktivierung der neutralen Sphingomyelinase 2 (NSM2). In einem kinetischen Phosphoproteom konnten zwei potentielle Interaktionsrezeptoren des MV identifiziert werden: CD43 und P2X3. Das hochglykosylierte Oberfl{\"a}chenmolek{\"u}l CD43 ist auf h{\"a}matopoetischen Zellen ubiquit{\"a}r exprimiert und reguliert in T-Zellen deren {\"U}berleben, Proliferation, Aktivierung, Migration und Adh{\"a}sion. P2X3 wird in h{\"a}matopoetischen Zellen nur in geringem Maße exprimiert. Seine funktionelle Bedeutung ist in diesem Kompartiment nicht bekannt. Beide Kandidaten wurden mittels CRISPR/Cas9 Verfahren einzeln oder kombiniert aus Jurkat-T-Zellen ablatiert, welche nachfolgend nach MV-Kontakt hinsichtlich der oben erw{\"a}hnten MV-modulierten Parameter getestet wurden. Zus{\"a}tzlich wurden iso- und allosterische P2X3-Inhibitoren an prim{\"a}ren und Jurkat-T-Zellen verwendet, um dessen Rolle in Ca2+-Mobilisierung und Proliferation nach T-Zell-Rezeptor Co-Stimulation zu analysieren. Die genetische Depletion beider Rezeptor-Kandidaten verringerte die Effekte des MV auf alle getesteten Parameter signifikant, was darauf hindeutet, dass beide Proteine entscheidend an der T-Zell-Suppression beteiligt sind. W{\"a}hrend die isosterische Inhibition von P2X3 keinen Effekt hatte, wurde die Proliferation prim{\"a}rer T-Zellen durch dessen allosterische Inhibition vor Co-Stimulation fast verdoppelt und die Effizienz der Ca2+-Mobilisierung in Jurkat- und prim{\"a}ren T-Zellen signifikant erh{\"o}ht. In P2X3-depletierten Jurkat-Zellen hingegen war die Ca2+-Mobilisierung nach Stimulation signifikant geringer als in WT-Zellen. In dieser Arbeit konnten zwei wichtige Mediatoren der MV induzierten T-Zell-Suppression identifiziert werden. Vor allem P2X3, dessen Expression, Regulation und funktionelle Bedeutung im h{\"a}matopoetischen Kompartiment noch nicht erforscht wurde, k{\"o}nnte ein vielversprechender Kandidat f{\"u}r eine antivirale Therapie darstellen, da ein klinisch getesteter P2X3-Inhibitor bereits verf{\"u}gbar ist.}, subject = {Masernvirus}, language = {de} } @phdthesis{Neagoe2024, author = {Neagoe, Raluca Alexandra Iulia}, title = {Development of techniques for studying the platelet glycoprotein receptors GPVI and GPIb localisation and signalling}, doi = {10.25972/OPUS-31306}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-313064}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2024}, abstract = {Platelets play an important role in haemostasis by mediating blood clotting at sites of blood vessel damage. Platelets, also participate in pathological conditions including thrombosis and inflammation. Upon vessel damage, two glycoprotein receptors, the GPIb-IX-V complex and GPVI, play important roles in platelet capture and activation. GPIb-IX-V binds to von Willebrand factor and GPVI to collagen. This initiates a signalling cascade resulting in platelet shape change and spreading, which is dependent on the actin cytoskeleton. This thesis aimed to develop and implement different super-resolution microscopy techniques to gain a deeper understanding of the conformation and location of these receptors in the platelet plasma membrane, and to provide insights into their signalling pathways. We suggest direct stochastic optical reconstruction microscopy (dSTORM) and structured illumination microscopy (SIM) as the best candidates for imaging single platelets, whereas expansion microscopy (ExM) is ideal for imaging platelets aggregates. Furthermore, we highlighted the role of the actin cytoskeleton, through Rac in GPVI signalling pathway. Inhibition of Rac, with EHT1864 in human platelets induced GPVI and GPV, but not GPIbα shedding. Furthermore, EHT1864 treatment did not change GPVI dimerisation or clustering, however, it decreased phospholipase Cγ2 phosphorylation levels, in human, but not murine platelets, highlighting interspecies differences. In summary, this PhD thesis demonstrates that; 1) Rac alters GPVI signalling pathway in human but not mouse platelets; 2) our newly developed ExM protocol can be used to image platelet aggregates labelled with F(ab') fragments}, subject = {Platelet-Membranglykoprotein p62}, language = {en} } @phdthesis{Weisert2024, author = {Weisert, Nadine}, title = {Characterization of telomere-associated proteins in \(Trypanosoma\) \(brucei\)}, doi = {10.25972/OPUS-35273}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-352732}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2024}, abstract = {The unicellular pathogen Trypanosoma brucei is the causative agent of African trypanosomiasis, an endemic disease prevalent in sub-Saharan Africa. Trypanosoma brucei alternates between a mammalian host and the tsetse fly vector. The extracellular parasite survives in the mammalian bloodstream by periodically exchanging their ˈvariant surface glycoproteinˈ (VSG) coat to evade the host immune response. This antigenic variation is achieved through monoallelic expression of one VSG variant from subtelomeric ˈbloodstream form expression sitesˈ (BES) at a given timepoint. During the differentiation from the bloodstream form (BSF) to the procyclic form (PCF) in the tsetse fly midgut, the stage specific surface protein is transcriptionally silenced and replaced by procyclins. Due to their subtelomeric localization on the chromosomes, VSG transcription and silencing is partly regulated by homologues of the mammalian telomere complex such as TbTRF, TbTIF2 and TbRAP1 as well as by ˈtelomere-associated proteinsˈ (TelAPs) like TelAP1. To gain more insights into transcription regulation of VSG genes, the identification and characterization of other TelAPs is critical and has not yet been achieved. In a previous study, two biochemical approaches were used to identify other novel TelAPs. By using ˈco-immunoprecipitationˈ (co-IP) to enrich possible interaction partners of TbTRF and by affinity chromatography using telomeric repeat oligonucleotides, a listing of TelAP candidates has been conducted. With this approach TelAP1 was identified as a novel component of the telomere complex, involved in the kinetics of transcriptional BES silencing during BSF to PCF differentiation. To gain further insights into the telomere complex composition, other previously enriched proteins were characterized through a screening process using RNA interference to deplete potential candidates. VSG expression profile changes and overall proteomic changes after depletion were analyzed by mass spectrometry. With this method, one can gain insights into the functions of the proteins and their involvement in VSG expression site regulation. To validate the interaction of proteins enriched by co-IP with TbTRF and TelAP1 and to identify novel interaction proteins, I performed reciprocal affinity purifications of the four most promising candidates (TelAP2, TelAP3, PPL2 and PolIE) and additionally confirmed colocalization of two candidates with TbTRF via immunofluorescence (TelAP2, TelAP3). TelAP3 colocalizes with TbTRF and potentially interacts with TbTRF, TbTIF2, TelAP1 and TelAP2, as well as with two translesion polymerases PPL2 and PolIE in BSF. PPL2 and PolIE seem to be in close contact to each other at the telomeric ends and fulfill different roles as only PolIE is involved in VSG regulation while PPL2 is not. TelAP2 was previously characterized to be associated with telomeres by partially colocalizing with TbTRF and cells show a VSG derepression phenotype when the protein was depleted. Here I show that TelAP2 interacts with the telomere-binding proteins TbTRF and TbTIF2 as well as with the telomere-associated protein TelAP1 in BSF and that TelAP2 depletion results in a loss of TelAP1 colocalization with TbTRF in BSF. In conclusion, this study demonstrates that characterizing potential TelAPs is effective in gaining insights into the telomeric complex's composition and its role in VSG regulation in Trypanosoma brucei. Understanding these interactions could potentially lead to new therapeutic targets for combatting African trypanosomiasis.}, subject = {Telomer }, language = {en} } @phdthesis{Engelmann2023, author = {Engelmann, Daria Marie}, title = {Regulation of Mammalian Phosphoglycolate Phosphatase}, doi = {10.25972/OPUS-19957}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-199577}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2023}, abstract = {Mammalian phoshoglycolate phosphatase (PGP, also known as AUM) belongs to the ubiquitous HAD superfamily of phosphatases. As several other members of HAD phosphatases, the Mg2+-dependent dephosphorylation is conducted via a nucleophilic attack from a conserved aspartate residue in the catalytic cleft. The protein structure of PGP could not yet be solved entirely. Only a hybrid consisting of the PGP cap and the PDXP core (pyridoxal phosphatase, closest enzyme paralog) was crystallizable so far. PGP is able to efficiently dephosphorylate 2-phosphoglycolate, 2-phospho-L-lactate, 4-phospho-D-erythronate, and glycerol-3-phosphate in vitro which makes them likely physiological substrates. The first three substrates can be derived from metabolic side reactions (during glycolysis) and inhibit key enzymes in glycolysis and pentose phosphate pathway, the latter is situated at the intersection between glycolysis and lipogenesis. 2-phosphoglycolate can also be released in the context of repair of oxidative DNA damage. The activity of purified PGP can be reversibly inhibited by oxidation - physiologically likely in association with epidermal growth factor (EGF) signal transduction. In fact, an association between persistently lacking PGP activity (via downregulation) and the presence of hyperphosphorylated proteins after EGF stimulation has been identified. Reversible oxidation and transient inactivation of PGP may be particularly important for short-term and feedback regulatory mechanisms (as part of the EGF signaling). Furthermore, cellular proliferation in PGP downregulated cells is constantly reduced. Whole-body PGP inactivation in mice is embryonically lethal. Despite the many well-known features and functions, the knowledge about PGP is still incomplete. In the present work the influence of reactive oxygen species (ROS) on PGP activity in cells und a possible connection between oxidative stress and the proliferation deficit of PGP downregulated cells was investigated. For the experiments, a spermatogonial cell line was used (due to the high PGP expression in testis). PGP activity can be reversibly inhibited in cellular lysates by H2O2 (as a ROS representative). Reversible oxidation could thus indeed be physiologically important. More oxidative DNA damage (by bleomycin) showed no PGP-dependent effects here. EGF stimulation (as an inducer of transient and well-controlled ROS production), low concentrations of menadione (as an oxidant) and N-acetylcysteine (as an antioxidant) were able to approximate the proliferation rate in PGP downregulated cells to that of control cells. The redox regulation of PGP could thus have an influence on cellular proliferation as a feedback mechanism - a mechanism that could not take place in PGP downregulated cells. However, the connections are probably even more complex and cannot be elucidated by a sole examination of the proliferation rate. The present results can thus only be regarded as preliminary experiments. For a better understanding of the features and functions of PGP, this work then focused on specific regulation of enzyme activity by pharmacologically applicable small molecules. Four potent inhibitors had previously been identified in a screening campaign. In this work, three of these four inhibiting compounds could be further characterized in experiments with highly purified, recombinant murine and human PGP. Compounds \#2 and \#9 showed competitive inhibition properties with a markedly rising KM value with little or no change in vmax. The results were consistent for all tested protein variants: the murine and the human PGP as well as a PGP/PDXP hybrid protein. Compound \#1 was the most potent and interesting PGP-inhibitory molecule: less change in KM and a constant decrease in vmax as well as a lower impact on the PGP/PDXP hybrid hint at a mixed mode of inhibition as a combination of competitive and non-competitive inhibition. The characterization of the potential inhibitors can serve as a basis for further structural analysis and studies on the complex physiological role of PGP.}, subject = {Phosphoglykolatphosphatase}, language = {en} } @phdthesis{Behnke2023, author = {Behnke, Jennifer Kim}, title = {Charakterisierung der Krankheitsprogression im genetischen hm\(^2\)α-SYN-39 Mausmodell des Morbus Parkinson}, doi = {10.25972/OPUS-30204}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-302040}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2023}, abstract = {In dieser Arbeit wurde die Krankheitsprogression im Parkinson-Mausmodell hm2α-SYN-39 mit zunehmendem Alter charakterisiert. Die M{\"a}use wurden in 4 Altersgruppen (2-3, 7-8, 11-12, 16-17 Monate) mit motorischen Verhaltenstests auf einen Parkinson-Ph{\"a}notyp untersucht. Zudem erfolgten Untersuchungen des dopaminergen Systems zur Detektion von neurochemischen Ver{\"a}nderungen und einer Neurodegeneration im nigrostriatalen Trakt. Weiterhin wurden neuroinflammatorische Prozesse des adaptiven und angeborenen IS in der SN und im Striatum mittels immunhistochemischer F{\"a}rbungen beurteilt. Ein Parkinson-Ph{\"a}notyp in diesem Mausmodell zeigte sich nur leicht ausgepr{\"a}gt, sodass der Rotarod- und Zylinder-Test lediglich den Hinweis auf eine nicht-signifikante Einschr{\"a}nkung der Motorik erbrachte. Dennoch ergab die stereologische Quantifizierung TH- und Nissl-positiver Zellen in der SNpc der hm2α-SYN-39 M{\"a}use eine altersabh{\"a}ngige, signifikant-progrediente Reduktion der dopaminergen Neurone mit zunehmendem Alter. Eine signifikant niedrigere TH-positive Zellzahl dieser tg M{\"a}use zeigte sich ab einem Alter von 16-17 Monaten verglichen zu gleichaltrigen wt Tieren. Dagegen war die Neurodegeneration im Striatum etwas weniger ausgepr{\"a}gt. Die tg M{\"a}use pr{\"a}sentierten im Alter von 16-17 Monaten eine nicht-signifikante Erniedrigung der dopaminergen Terminalen verglichen zu gleichaltrigen wt Tieren. Ein DA-Mangel im Striatum der tg M{\"a}use konnte mittels HPLC best{\"a}tigt werden. Bis zum Alter von 16-17 Monaten wurde eine signifikante Reduktion der DA-Level von 23,2 \% verglichen zu gleichaltrigen wt M{\"a}usen gezeigt. Außerdem erniedrigt waren die striatalen Level von NA und 5-HAT bei tg M{\"a}usen, passend zu den bisherigen Ergebnissen bei Parkinson-Patienten. Immunhistochemische Untersuchungen einer Neuroinflammation im nigrostriatalen Trakt ergaben eine tendenziell erh{\"o}hte Infiltration von CD4- und CD8-positiven T-Zellen bei hm2α-SYN-39 M{\"a}usen mit zunehmendem Alter, wobei die Infiltration CD8-positiver Zellen ausgepr{\"a}gter war als bei CD4-positiven Zellen. Eine noch deutlichere neuroinflammatorische Reaktion zeigte das angeborene IS. Hierbei ergab die immunhistologische Quantifizierung CD11b-positiver mikroglialer Zellen einen hochsignifikanten Anstieg im nigrostriatalen Trakt bei hm2α-SYN-39 M{\"a}usen schon im jungen Alter. Zusammenfassend pr{\"a}sentierte dieses Parkinson-Mausmodell eine langsam-progrediente Parkinson-Pathologie mit begleitender Neuroinflammation im nigrostriatalen Trakt w{\"a}hrend des Alterns, wobei die Immunantwort der mikroglialen Zellen zu einem fr{\"u}heren Zeitpunkt einsetzte als die T-Zellinfiltration und Neurodegeneration. Dieses Mausmodell bietet zahlreiche M{\"o}glichkeiten zur zuk{\"u}nftigen Erforschung der Pathophysiologie beim MP. Generell weist diese Arbeit auf eine bedeutende Rolle neuroinflammatorischer Prozesse in der Krankheitsprogression der Parkinsonerkrankung hin und soll dazu ermutigen Neuroinflammation durchaus intensiver in tg Tiermodellen zu untersuchen.}, subject = {Parkinson-Krankheit}, language = {de} } @phdthesis{Bachmann2021, author = {Bachmann, Julia}, title = {Role of Adipose-Derived Stromal/Stem Cells in Cell-Assisted Lipotransfer - Characterization of their Secretory Capacity under Ischemia-Like Stress Conditions and Establishment of a 3D Adipose Tissue-ASC Co-Culture}, doi = {10.25972/OPUS-25178}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-251786}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {The use of human adipose-derived mesenchymal stem cells (ASCs) for cell-based therapeutic approaches, in terms of repair and regeneration of various tissues and organs, offers an alternative therapeutic tool in the field of regenerative medicine. The ability of ASCs to differentiate along mesenchymal lineages is not the only property that makes these cells particularly attractive for therapeutic purposes. Their promising functions in promoting angiogenesis, reducing inflammation as well as in functional tissue restoration are largely related to the trophic effects of a broad panel of secreted cytokines and growth factors. However, in cell-based approaches, the cell-loaded construct often is exposed to an ischemic microenvironment characterized by severe oxidative and nutritional stress after transplantation due to the initial lack of vascular connection, resulting in reduced cell viability and altered cell behaviour. Therefore, the effective use of ASCs in regenerative medicine first requires a comprehensive characterization of the cells in terms of their viability, differentiation capacity and especially their secretory capabilities under ischemia-mimicking conditions in order to better understand their beneficial role. Accordingly, in the first part of this work, ASCs were investigated under different ischemic conditions, in which cells were exposed to both glucose and oxygen deprivation, with respect to viability and secretory function. Using mRNA gene expression analysis, significantly higher expression of selected angiogenic, anti-apoptotic and immunomodulatory factors (IL-6, VEGF, STC-1) could be demonstrated under harsh ischemic conditions. These results were reflected at the protein expression level by a significantly increased secretion of these factors. For stanniocalcin-1 (STC-1), a factor not yet described in ASCs, a particularly high expression with significant secreted amounts of the protein could be demonstrated under harsh ischemic conditions. Thus, the first part of this work, in addition to the characterization of the viability, provided first insights into the secretory response of ASCs under ischemic conditions. The response of ASCs to glucose deficiency in combination with severe hypoxia has been little explored to date. Thus, the focus of the second part of this work was on a more detailed investigation of the secretory response of ASCs under glucose and oxygen deprivation. For a more comprehensive analysis of the secretion profile, a cytokine antibody array was performed, which allowed the detection of a broad panel of secreted angiogenic factors (IL-8, ANG), matrix-regulating proteins (TIMP-1, TIMP-2), chemokines (MCP-1/CCL2, IP-10/CXCL 10) and other factors under ischemic conditions. To verify these results, selected factors were examined using ELISA. The analysis revealed that the secretion of individual factors (e.g., STC-1, VEGF) was significantly upregulated by the combination of glucose and oxygen deprivation compared to oxygen deprivation alone. In order to investigate the impact of the secretome of ischemic ASCs on cell types involved in tissue regeneration, the effect of conditioned medium of ischemia-challenged ASCs on both endothelial cells and fibroblasts was investigated in subsequent experiments. Significantly increased viability and tube formation of endothelial cells as well as activated migration of fibroblasts by the secreted factors of ischemic ASCs could be demonstrated. A direct correlation of these effects to STC-1, which was significantly upregulated under ischemic conditions and has been described as a regulator of key cellular functions, could not be verified. The particular secretory capacity of ASCs provides a valuable tool for cell-based therapies, such as cell-assisted lipotransfer (CAL), where by enriching fat grafts with isolated ASCs, a significantly improved survival rate of the transplanted construct is achieved with less resorption of the fat tissue as well as a reduction in adverse implications, such as fibrosis and cyst formation. In order to better understand the function of ASCs in CAL, an autologous transwell-based lipograft-ASC co-culture was established in the last part of this work, in which first investigations showed a markedly increased secretion of VEGF compared to lipografts without added ASCs. As the stability rate of the fat tissue and thus the success of CAL is presumably also dependent on the preparation of the tissue before transplantation, the conventional preparation method of fat tissue for vocal fold augmentation in laryngoplasty was additionally evaluated in vitro in a pilot experiment. By analyzing the viability and tissue structure of the clinically prepared injection material, a large number of dead cells and a clearly damaged tissue structure with necrotic areas could be demonstrated. In comparison, the preparation method of the fat tissue established in this work as small tissue fragments was able to provide a clearly intact, vital, and vascularized tissue structure. This type of adipose tissue preparation represents a promising alternative for clinical vocal fold augmentation. In conclusion, the results of this work contribute to a comprehensive characterization of ASCs under ischemic conditions, such as those prevalent at the transplantation site or in tissue regeneration. The results obtained, especially on the secretory capacity of ASCs, provide new insights into how ASCs mediate regenerative effects in an ischemic milieu and why their use for therapeutic purposes is highly attractive and promising.}, subject = {Adipose}, language = {en} } @phdthesis{Hauptstein2022, author = {Hauptstein, Julia}, title = {Hyaluronic Acid-based Multifunctional Bioinks for 3D Bioprinting of Mesenchymal Stromal Cells for Cartilage Regeneration}, doi = {10.25972/OPUS-26068}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-260681}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2022}, abstract = {Articular cartilage is a highly specialized tissue which provides a lubricated gliding surface in joints and thereby enables low-friction movement. If damaged once it has a very low intrinsic healing capacity and there is still no treatment in the clinic which can restore healthy cartilage tissue. 3D biofabrication presents a promising perspective in the field by combining healthy cells and bioactive ink materials. Thereby, the composition of the applied bioink is crucial for defect restoration, as it needs to have the physical properties for the fabrication process and also suitable chemical cues to provide a supportive environment for embedded cells. In the last years, ink compositions with high polymer contents and crosslink densities were frequently used to provide 3D printability and construct stability. But these dense polymeric networks were often associated with restricted bioactivity and impaired cell processes like differentiation and the distribution of newly produced extracellular matrix (ECM), which is especially important in the field of cartilage engineering. Therefore, the aim of this thesis was the development of hyaluronic acid (HA)-based bioinks with a reduced polymer content which are 3D printable and additionally facilitate chondrogenic differentiation of mesenchymal stromal cells (MSCs) and the homogeneous distribution of newly produced ECM. Starting from not-printable hydrogels with high polymer contents and restricted bioactivity, distinct stepwise improvements were achieved regarding stand-alone 3D printability as well as MSC differentiation and homogeneous ECM distribution. All newly developed inks in this thesis made a valuable contribution in the field of cartilage regeneration and represent promising approaches for potential clinical applications. The underlying mechanisms and established ink design criteria can further be applied to other biofabricated tissues, emphasizing their importance also in a more general research setting.}, subject = {Hyalurons{\"a}ure}, language = {en} } @phdthesis{ElMerahbi2021, author = {El Merahbi, Rabih}, title = {Adrenergic-induced ERK3 pathway drives lipolysis and suppresses energy dissipation}, doi = {10.25972/OPUS-21751}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-217510}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {Obesity-induced diabetes affects over 400 million people worldwide. Obesity is a complex metabolic disease and is associated with several co-morbidities, all of which negatively affect the individual's quality of life. It is commonly considered that obesity is a result of a positive energy misbalance, as increased food intake and lower expenditure eventually lead to the development of this disease. Moreover, the pathology of obesity is attributed to several genetic and epigenetic factors that put an individual at high risk compared to another. Adipose tissue is the main site of the organism's energy storage. During the time when the nutrients are available in excess, adipocytes acquire triglycerides, which are released during the time of food deprivation in the process of lipolysis (free fatty acids and glycerol released from adipocytes). Uncontrolled lipolysis is the consequent event that contributes to the development of diabetes and paradoxically obesity. To identify the genetic factors aiming for future therapeutic avenues targeting this pathway, we performed a high-throughput screen and identified the Extracellular-regulated kinase 3 (ERK3) as a hit. We demonstrate that β-adrenergic stimulation stabilizes ERK3 leading to the formation of a complex with the co-factor MAP kinase-activated protein kinase 5 (MK5) thereby driving lipolysis. Mechanistically, we identify a downstream target of the ERK3/MK5 pathway, the transcription factor FOXO1, which promotes the expression of the major lipolytic enzyme ATGL. Finally, we provide evidence that targeted deletion of ERK3 in mouse adipocytes inhibits lipolysis, but elevates energy dissipation, promoting lean phenotype and ameliorating diabetes. Moreover, we shed the light on our pharmacological approach in targeting ERK3/MK5 pathways using MK5 specific inhibitor. Already after 1 week of administering the inhibitor, mice showed signs of improvement of their metabolic fitness as showed here by a reduction in induced lipolysis and the elevation in the expression of thermogenic genes. Taken together, our data suggest that targeting the ERK3/MK5 pathway, a previously unrecognized signaling axis in adipose tissue, could be an attractive target for future therapies aiming to combat obesity-induced diabetes.}, subject = {Metabolism}, language = {en} } @phdthesis{Tiffe2019, author = {Tiffe, Theresa}, title = {Pr{\"a}valenz und Determinanten f{\"u}r die Einhaltung der leitliniengerechten Therapie kardiovaskul{\"a}rer Risikofaktoren in der Prim{\"a}r- und Sekund{\"a}rpr{\"a}vention von Herz-Kreislauf-Erkrankungen in Deutschland}, doi = {10.25972/OPUS-19272}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-192723}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {Die Einhaltung eines gesunden Lebensstils, einschließlich der Behandlung modifizierbarer kardiovaskul{\"a}rer Risikofaktoren, beeinflusst maßgeblich die Entstehung und Progression von Herz-Kreislauf-Erkrankungen (HKE). So reduziert eine ausgewogene Ern{\"a}hrungsweise, ausreichend k{\"o}rperliche Aktivit{\"a}t, Tabakverzicht, das Halten des Normalgewichtes sowie die Behandlung einer Hypertonie, Hyperlipid{\"a}mie und Diabetes mellitus, die kardiovaskul{\"a}re Morbidit{\"a}t und Mortalit{\"a}t. Die vorliegende Arbeit widmet sich (a) der Pr{\"a}valenz und leitliniengerechten Kontrolle kardiovaskul{\"a}rer Risikofaktoren von Teilnehmern aus der Allgemeinbev{\"o}lkerung der STAAB Kohortenstudie („H{\"a}ufigkeit und Einflussfaktoren auf fr{\"u}he Stadien A und B der Herzinsuffizienz in der Bev{\"o}lkerung") sowie der Sch{\"a}tzung des 10-Jahres Risikos f{\"u}r t{\"o}dliche HKE in diesem Kollektiv. Weiterhin wurde (b) der Einfluss von medikamentenbezogenen {\"U}berzeugungen auf die Blutdruckkontrolle von Teilnehmern der STAAB Kohortenstudie untersucht. Schließlich wurde (c) der Erhalt von {\"a}rztlichen Lebensstilempfehlungen sowie deren Determinanten bei Teilnehmern der STAAB Kohortenstudie sowie der EUROASPIRE IV Studie („European Action on Secondary and Primary Prevention by Intervention to Reduce Events") in Deutschland betrachtet. Die STAAB Kohortenstudie untersucht die fr{\"u}hen asymptomatischen Formen der Herzinsuffizienz-Stadien A und B in einer repr{\"a}sentativen Stichprobe von 5.000 Personen ohne symptomatische Herzinsuffizienz im Alter von 30 bis 79 Jahren aus der Allgemeinbev{\"o}lkerung mit Wohnsitz in der Stadt W{\"u}rzburg. Die EUROASPIRE IV Studie untersuchte bei 7.998 Koronarpatienten im Alter von 18 bis 79 Jahren aus insgesamt 24 Europ{\"a}ischen L{\"a}ndern (536 Patienten aus Deutschland) im Zeitraum 2012 bis 2013 die Risikofaktoren sowie die Umsetzung der leitliniengerechten Versorgung und Pr{\"a}vention von HKE im europ{\"a}ischen Vergleich. Die Datenerhebung beider Studien erfolgte durch ein geschultes Studienpersonal nach standardisierten Vorgaben. Die Pr{\"a}valenz und Kontrolle kardiovaskul{\"a}rer Risikofaktoren nach den aktuellen Vorgaben der „European Society of Cardiology" (ESC) wurde bei insgesamt 1.379 Teilnehmern, die zwischen Dezember 2013 und April 2015 an der STAAB Kohortenstudie teilgenommen haben, untersucht. Es zeigte sich eine hohe Pr{\"a}valenz der kardiovaskul{\"a}ren Risikofaktoren Hypertonie (31.8\%), Hyperlipid{\"a}mie (57.6\%) und Diabetes mellitus (3.5\%). Hierbei erreichten trotz Pharmakotherapie {\"u}ber die H{\"a}lfte der Teilnehmer mit einem Bluthochdruck (52.7\%) oder erh{\"o}hten LDL-Cholesterinwerten (56.7\%) sowie 44.0\% der Personen mit einem Diabetes mellitus die empfohlenen Grenzwerte nicht. Weiterhin wurde erstmalig zu Studienbesuch eine Hypertonie (36.0\%), Hyperlipid{\"a}mie (54.2\%) oder ein Langzeitzuckerwert (HbA1c) >6.5\% (23.3\%) detektiert. In der j{\"u}ngsten Altersgruppe (30-39 Jahre) fand sich der h{\"o}chste Anteil von unbekanntem Bluthochdruck (76.5\%) sowie hohem LDL-Cholesterin (78.0\%) und die Altersgruppe 60-69 Jahren wies mit 43.5\% die h{\"o}chste Pr{\"a}valenz f{\"u}r einen bislang nicht detektierten HbA1c >6.5\% auf. Die Akkumulation von drei oder mehr kardiovaskul{\"a}ren Risikofaktoren war mit dem m{\"a}nnlichen Geschlecht, einem h{\"o}heren Alter und einem niedrigeren Bildungsgrad assoziiert. Von 980 mittels SCORE („Systematic Coronary Risk Evaluation") Risiko-Chart untersuchten Teilnehmern befanden sich jeweils 56.6\%, 35.8\% und 7.5\% in der niedrigen, mittleren und hohen bis sehr hohen SCORE-Risikogruppe f{\"u}r t{\"o}dliche HKE. Das Hochrisiko-Kollektiv f{\"u}r t{\"o}dliche HKE war vorwiegend m{\"a}nnlich und wies h{\"a}ufiger eine Hypertonie oder ein hohes LDL-Cholesterin auf. Der Einfluss von {\"U}berzeugungen gegen{\"u}ber antihypertensiver Medikation auf die Blutdruckkontrolle wurde an 293 Teilnehmern, die von Oktober 2014 bis M{\"a}rz 2017 an der STAAB Kohortenstudie teilgenommen haben, untersucht. Auf ihre Medikamente gesundheitlich angewiesen zu sein gaben 87\% der Teilnehmer an, 78.1\% stimmten der Aussage zu, dass ihre Medikamente sie vor einer Verschlechterung ihrer Gesundheit sch{\"u}tzen. Es zeigte sich ein inverser Zusammenhang zwischen einem h{\"o}heren Maß an Bedenken gegen{\"u}ber der verordneten blutdrucksenkenden Medikation und einer besseren Blutdruckkontrolle bei Frauen. Ein signifikanter Zusammenhang zwischen Bedenken gegen{\"u}ber einer antihypertensiven Medikation und der Blutdruckkontrolle bei M{\"a}nnern ließ sich hingegen nicht feststellen. Es konnten keine statistisch signifikanten Assoziationen f{\"u}r die Notwendigkeit von Medikation in der vorliegen Untersuchung gezeigt werden. Die H{\"a}ufigkeit und Determinanten f{\"u}r die Empfehlung eines {\"a}rztlichen Lebensstils wurde bei 665 Teilnehmern der STAAB Kohortenstudie ohne vorbestehende HKE (Prim{\"a}rpr{\"a}vention) und bei 536 Koronarpatienten der EUROASPIRE IV Studie (Sekund{\"a}rpr{\"a}vention) untersucht. Mit Ausnahme der Empfehlung zum Rauchverzicht erhielten die Patienten der EUROASPIRE IV Studie h{\"a}ufiger {\"a}rztliche Lebensstilempfehlungen verglichen mit Teilnehmern der STAAB Kohortenstudie: (Rauchverzicht: STAAB 44.0\%, EUROASPIRE 36.7\%; Gewichtsreduktion: STAAB 43.9\%, EUROASPIRE 69.2\%; k{\"o}rperliche Aktivit{\"a}t steigern: STAAB 52.1\%, EUROASPIRE 71.4\%; gesundes Ern{\"a}hrungsverhalten: STAAB 43.9\%, EUROASPIRE 73.1\%). Die Chance f{\"u}r den Erhalt von mindestens 50\% aufgrund der individuellen Risikofaktoren ad{\"a}quaten {\"a}rztlichen Lebensstilempfehlungen war bei STAAB Teilnehmern mit offensichtlichen oder beobachtbaren kardiovaskul{\"a}ren Risikofaktoren signifikant erh{\"o}ht (BMI >25kg/m2, Hypertonie, Hyperlipid{\"a}mie und Diabetes mellitus). Hingegen erhielten Patienten mit einer vorbestehenden HKE signifikant h{\"a}ufiger eine {\"a}rztliche Lebensstilempfehlung bei einem Diabetes mellitus, wobei die Empfehlungsh{\"a}ufigkeit mit zunehmendem Alter abnahm. Die weitergehende nicht publizierte Analyse des Interaktions Modells zeigte, dass der Zusammenhang zwischen dem Alter und der Empfehlungsh{\"a}ufigkeit bei Patienten mit bereits bestehender HKE st{\"a}rker ausgepr{\"a}gt war, als bei Teilnehmern der STAAB Kohortenstudie ohne koronare HKE. Weiterhin war der Zusammenhang zwischen einer ad{\"a}quaten Lebensstilempfehlung und Hyperlipid{\"a}mie bei Teilnehmern ohne koronares Ereignis signifikant st{\"a}rker ausgepr{\"a}gt, im Vergleich zu Patienten mit einer bereits bestehender HKE. Die Ergebnisse zeigten ein erhebliches Potenzial f{\"u}r eine verbesserte Umsetzung leitliniengerechter Behandlung modifizierbarer kardiovaskul{\"a}rer Risikofaktoren in der Prim{\"a}r- und Sekund{\"a}rpr{\"a}vention. Vor dem Hintergrund einer hohen Anzahl kardiovaskul{\"a}rer Risikofaktoren bei jungen Erwachsenen sollte die Bedeutung der Langzeitfolgen im Arzt Patienten-Gespr{\"a}ch hervorgehoben und bei der Erarbeitung von Pr{\"a}ventionsstrategien, insbesondere f{\"u}r junge Altersgruppen, Beachtung finden. Geschlechtsspezifische Determinanten hinsichtlich der Kontrolle kardiovaskul{\"a}rer Risikofaktoren sowie Bef{\"u}rchtungen gegen{\"u}ber der Medikation sollten st{\"a}rker im Arzt-Patientengespr{\"a}ch ber{\"u}cksichtigt werden. Zur St{\"a}rkung der Compliance des Patienten bei der Umsetzung eines gesunden Lebensstils, sollte der Arzt hinsichtlich der Bedeutung von Lebensstilintervention, aber auch im Umgang mit schwierigen Situationen, wie die Empfehlung einer Gewichtsreduktion, sensibilisiert und bei der richtigen Handhabung der Leitlinienempfehlung st{\"a}rker unterst{\"u}tzt werden.}, subject = {Kardiovaskul{\"a}re Krankheit}, language = {de} } @phdthesis{Mainz2022, author = {Mainz, Laura}, title = {Cellular metabolism as target for cancer therapy}, doi = {10.25972/OPUS-21148}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-211480}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2022}, abstract = {Due to a usually late diagnosis, drug resistance and early metastases, pancreatic ductal adenocarcinoma (PDAC) is the seventh leading cause of global cancer deaths. Thus, there is an urgent need to develop new therapeutic concepts. Two different approaches have in recent years become the focus of intense research: (1) targeting cancer-associated metabolic rearrangements, and (2) targeting genetic vulnerabilities with combination therapy. Both concepts potentially have advantages such as increased efficacy, which decreases the likelihood of therapy-resistance, and reduced side effects, that are often associated with high concentrations of chemotherapeutic drugs. Autophagy is an evolutionary conserved signalling pathway that regulates cellular homeostasis. Regarding cancer, autophagy can either promote or suppress tumor growth. However, mouse models that allow genetic regulation of autophagy in established tumor tissue are not yet established. Therefore, we analysed new inducible shRNA mouse models targeting Atg5 or Atg7 with regard to functionality and toxicity. Both, shRNA Atg5- and shRNA Atg7-mediated knockdown anteceded functional autophagy impairment, and revealed unexpected profound phenotypic differences. Knockdown of Atg5 neither impaired the animal nor caused any grossly or microscopically detectable organ damage, whereas knockdown of Atg7 caused pancreatic destruction and eventually death. It is currently unclear whether mice died as a result of exocrine or endocrine collapse or due to a combination of both. The presented mouse models are highly potent RNAi mice that allow widespread and regulable inhibition of autophagy upon administration of doxycycline and provide a valuable and versatile toolbox for future autophagy and cancer research. In PDAC, argininosuccinate synthase 1 (ASS1) deficiency has been associated with higher recurrence rates, shorter disease-free survival, and shorter overall survival. During cancer development, rate-limiting enzymes of de novo arginine synthesis, like ASS1 or OTC, are downregulated via epigenetic silencing of their respective promotor. Known as 'arginine auxotrophy', loss of these essential enzymes results in dependence on extracellular arginine. Based on this assumption, sensitivity of various cell lines to arginine deprivation was reported. However, the underlying mechanism is still unclear and the anti-tumor effects of the monotherapy are not sufficient to completely abrogate cancer cells. Therefore, the effects of arginine deprivation via rhArgI-PEG5000 were investigated in murine and human PDAC cells. In this study, we highlighted that arginine deprivation induced profound alterations such as autophagosome accumulation, induction of senescence and the ISR in pancreatic cancer cells. These alterations are potential genetic vulnerabilities that can be targeted by additional means to induce tumor cell death.}, language = {en} } @phdthesis{Xu2022, author = {Xu, Wenshan}, title = {Regulation of the DNA Damage Response by the Ubiquitin System}, doi = {10.25972/OPUS-16006}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-160064}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2022}, abstract = {DNA damage occurs frequently during normal cellular progresses or by environmental factors. To preserve the genome integrity, DNA damage response (DDR) has evolved to repair DNA and the non-properly repaired DNA induces human diseases like immune deficiency and cancer. Since a large number of proteins involved in DDR are enzymes of ubiquitin system, it is critical to investigate how the ubiquitin system regulates cellular response to DNA damage. Hereby, we reveal a novel mechanism for DDR regulation via activation of SCF ubiquitin ligase upon DNA damage. As an essential step for DNA damage-induced inhibition of DNA replication, Cdc25A degradation by the E3 ligase β-TrCP upon DNA damage requires the deubiquitinase Usp28. Usp28 deubiquitinates β-TrCP in response to DNA damage, thereby promotes its dimerization, which is required for its activity in substrate ubiquitination and degradation. Particularly, ubiquitination at a specific lysine on β-TrCP suppresses dimerization. The key mediator protein of DDR, 53BP1, forms oligomers and associates with β-TrCP to inhibit its activity in unstressed cells. Upon DNA damage, 53BP1 is degraded in the nucleoplasm, which requires oligomerization and is promoted by Usp28 in a β-TrCP-dependent manner. Consequently, 53BP1 destruction releases and activates β-TrCP during DNA damage response. Moreover, 53BP1 deletion and DNA damage promote β-TrCP dimerization and recruitment to chromatin sites that locate in the vicinity of putative replication origins. Subsequently, the chromatin-associated Cdc25A is degraded by β-TrCP at the origins. The stimulation of β-TrCP binding to the origins upon DNA damage is accompanied by unloading of Cdc45, a crucial component of pre-initiation complexes for replication. Loading of Cdc45 to origins is a key Cdk2-dependent step for DNA replication initiation, indicating that localized Cdc25A degradation by β-TrCP at origins inactivates Cdk2, thereby inhibits the initiation of DNA replication. Collectively, this study suggests a novel mechanism for the regulation of DNA replication upon DNA damage, which involves 53BP1- and Usp28-dependent activation of the SCF(β-TrCP) ligase in Cdc25A degradation.}, subject = {DNS-Sch{\"a}digung}, language = {en} } @phdthesis{Karikari2022, author = {Karikari, Akua Afriyie}, title = {Alpha Synuclein Specific T Lymphocytes Promote Neurodegeneration in the A53T-α-synuclein Parkinson's Disease Mouse Model}, doi = {10.25972/OPUS-18308}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-183080}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2022}, abstract = {Parkinson's disease (PD), which is the most common motor neurodegenerative disorder has attracted a tremendous amount of research advancement amid the challenges of the lack of an appropriate model that summate all the features of the human disease. Nevertheless, an aspect of the disease that is yet to be fully elucidated is the role of the immune system particularly the adaptive arm in the pathogenesis of PD. The focus of this study therefore was to characterize the contribution of lymphocytes in PD using the AAV1/2-A53T-α-synuclein mouse model of the disease that encodes for human mutated A53T-α-synuclein. This model was suitable for this research because it reflects more faithfully the molecular pathology underlying the human disease by exhibition of insoluble α-synuclein containing Lewy-like protein aggregates as compared to the more classical toxin models used in PD research. The outcome of this study showed that stereotaxic delivery of pathogenic α-synuclein via a viral vector into the substantia nigra engender the invasion of activated CD4+ and CD8+ T lymphocytes in the brain. The invasion of activated T cells in the brain especially in the substantia nigra then results in enhanced microglial activation and the disintegration of dopaminergic neurons. In addition, it was also discovered that CD4+ T cells augmented dopaminergic cell death to a greater extent than CD8+ T cells although; axonal degeneration occurred relatively independent from T cells contribution. The ex vivo and in vitro, experiments also indicated that the T cells were not only activated but they were specific to the mutated human α-synuclein antigen. As a result, they demonstrated selectivity in inducing more cell death to primary hippocampal neurons transduced with AAV1/2-A53T-α-synuclein vector than neurons with empty viral vector infection. The mechanism of T cell induced neuronal cell loss could not be attributed to the presence of cytokines neither was it mediated through MHC I and II. On the whole, this research has established that the presence of pathogenic α-synuclein in the substantia nigra has the potential to trigger immune responses that involve the transmigration of adaptive immune cells into the brain. The infiltration of the T cells consequently has a detrimental effect on the survival of dopaminergic neurons and the progression of the disease}, subject = {Parkinson-Krankheit}, language = {en} } @phdthesis{Tomasovic2020, author = {Tomasovic, Angela}, title = {Die ERK-ERK Interaktionsfl{\"a}che als therapeutische Zielstruktur zur selektiven Inhibition nukle{\"a}rer ERK1/2-Funktionen zum Schutz vor pathologischer kardialer Hypertrophie}, doi = {10.25972/OPUS-15430}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-154304}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2020}, abstract = {Die Mitogen-aktivierten Proteinkinasen ERK1/2 (extrazellul{\"a}r Signal-regulierte Kinase 1 und 2) sind die Effektorkinasen der Raf/MEK/ERK-Kaskade und verkn{\"u}pfen externe Stimuli mit der intrazellul{\"a}-ren Antwort, wodurch sie wichtige Schl{\"u}sselmolek{\"u}le der zellul{\"a}ren Signaltransduktion darstellen. Zahlreiche Studien belegen die Beteiligung von ERK1/2 an der Entstehung pathologischer kardialer Hypertrophie. Genauso ist bekannt, dass ERK1/2 anti-apoptotische, kardioprotektive Eigenschaften besitzen. So f{\"u}hrte, wie in dieser Arbeit gezeigt, eine Hemmung der katalytischen ERK1/2-Aktivit{\"a}t durch den MEK-Inhibitor PD98059 zu einer signifikanten Reduktion der hypertrophen Antwort von Kardiomy-ozyten auf den Stimulus Phenylephrin. Dies war allerdings mit einem Anstieg der Apoptoserate in diesen Zellen verbunden, wodurch sich eine Hemmung der totalen ERK-Aktivit{\"a}t als nicht praktika-bel f{\"u}r die Behandlung pathologischer kardialer Hypertrophie herauskristallisierte. In fr{\"u}heren Un-tersuchungen wurde eine Autophosphorylierung von ERK an Threonin 188 (murines ERK2) entdeckt und als Trigger f{\"u}r ERK1/2-vermitteltes hypertrophes Wachstum identifiziert. Diese Autophospho-rylierung steuert die nukle{\"a}re Lokalisation von ERK1/2 und erm{\"o}glicht so die Aktivierung nukle{\"a}rer ERK-Zielproteine sowie hypertrophes Wachstum. Eine Interferenz mit der ERKThr188-Phosphorylierung konnte schon in vitro und in vivo erfolgreich einer pathologischen Hypertrophie entgegenwirken, ohne Einfluss auf physiologisches Herzwachstum oder die zytosolischen, anti-apoptotischen Effekte von ERK1/2 zu nehmen. Einen initialen Schritt f{\"u}r das Zustandekommen dieser Autophosphorylierung an Threonin 188 stellt dabei die Dimerisierung von ERK dar. In der vorliegenden Arbeit wurde daher die Inhibition der ERK-Dimerisierung im Hinblick auf die Behand-lung ERKThr188-vermittelter pathologischer Hypertrophie untersucht. Dabei sollte die endogene ERK-Dimerisierung mithilfe eines selbst generierten Peptids unterbunden werden. In {\"U}bereinstimmung mit den Ergebnissen zu einer dimerisierungsdefizienten ERK2-Mutante (ERK2-Δ4) konnte das Peptid in vitro und in vivo erfolgreich pathologisch hypertrophes Herzwachstum mindern. Dabei f{\"u}hrte es sogar zu einem R{\"u}ckgang des apoptotischen Zelltodes, ausgel{\"o}st durch eine Aortenligation, f{\"u}h-ren. Es zeigte sich, dass das Peptid die nukle{\"a}re Translokation von ERK2 verhindert und dadurch nukle{\"a}re ERK-Substrate geringer aktiviert werden. Da eine Dysregulation in der Raf/MEK/ERK-Kaskade auch die Entstehung von Tumoren beg{\"u}nstigen kann, sollte schließlich untersucht wer-den, ob das Prinzip der Hemmung nukle{\"a}rer ERK-Effekte auch die Proliferation von Krebszellen beeinflussen kann. Es stellte sich heraus, dass die Peptid-vermittelte Hemmung der ERK-Dimerisierung auch die Proliferation von Kolonkarzinomzelllinien mit unterschiedlichen Mutations-stadien der Raf/MEK/ERK-Kaskade reduziert. In der vorliegenden Arbeit konnte somit die Intervention mit der ERK-Dimerisierung als Target der ERKThr188-Autophosphorylierung als translationale Strategie zur Reduktion nukle{\"a}rer ERK-Effekte herausgearbeitet werden. Dies bietet die M{\"o}glichkeit ERK-vermittelte pathologische kardialer Hy-pertrophie und ERK-vermittelte Tumor-Proliferation zu behandeln, ohne kardiotoxische Nebenwir-kungen zu verursachen.}, subject = {Herzinsuffizienz}, language = {de} } @phdthesis{JiruHillmann2022, author = {Jir{\`u}-Hillmann, Steffi}, title = {Schlaganfallversorgung: Europ{\"a}ische, deutsche und regionale Perspektiven}, doi = {10.25972/OPUS-26144}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-261445}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2022}, abstract = {Seit Mitte der 1990er Jahre wurden nationale und regionale Schlaganfallregister in Europa etabliert, die Auskunft {\"u}ber die Versorgungsqualit{\"a}t von Schlaganfallpatienten geben. Bislang lagen nur wenige Daten zu zeitlichen Trends der akuten Schlaganfallversorgung vor. Diese sind jedoch essentiell, um beispielsweise Zusammenh{\"a}nge zwischen der Einf{\"u}hrung potentiell qualit{\"a}tsverbessernder Maßnahmen und der Entwicklung der Versorgungsqualit{\"a}t feststellen zu k{\"o}nnen. Die Behandlung von Schlaganfallpatienten auf Stroke Units ist aufgrund der eindeutigen Evidenz aus randomisierten- und Beobachtungsstudien zum Standard geworden. Bislang war unklar, ob demografische und klinische Charakteristika die direkte Aufnahme auf eine Stroke Unit beeinflussen. Zudem war nicht bekannt, ob und wenn ja, in welchem Ausmaß strukturelle Kriterien und der Anteil der Patienten, der auf eine Stroke Unit aufgenommen wurde, die Qualit{\"a}t der Stroke Unit Versorgung beeinflussen. Im Anschluss an die Akutbehandlung im Krankenhaus bzw. nach geeigneten Rehabilitationsmaßnahmen {\"u}bernehmen pflegende Angeh{\"o}rige h{\"a}ufig die Versorgung der Schlaganfallpatienten im h{\"a}uslichen Umfeld. Die aktuelle Situation der pflegenden Angeh{\"o}rigen von Schlaganfallpatienten in Deutschland ist bisher jedoch nur unzureichend evaluiert. In der vorliegenden Dissertation wurden zun{\"a}chst im Rahmen des „European Implementation Score"-Projektes zeitliche Trends der Qualit{\"a}t der akuten Schlaganfallversorgung in f{\"u}nf nationalen europ{\"a}ischen Schlaganfallregistern aus Deutschland, England/Wales/Nordirland, Polen, Schottland und Schweden nach zuvor definierten evidenzbasierten Qualit{\"a}tsindikatoren berechnet. Im zweiten Schritt wurde anhand von Daten der Arbeitsgemeinschaft Deutscher Schlaganfall Register (ADSR) evaluiert, ob demografische und klinische Patientencharakteristika die direkte Aufnahme auf eine Stroke Unit in Deutschland beeinflussen. Weiterhin wurde der Einfluss struktureller Charakteristika auf die Erf{\"u}llung von 11 evidenzbasierter Qualit{\"a}tsindikatoren in Krankenh{\"a}usern, die {\"u}ber eine regionale oder {\"u}berregionale Stroke Unit verf{\"u}gen, untersucht. Abschließend wurden im Rahmen des regionalen Telemedizinnetzwerkes TRANSIT-Stroke demografische und klinische Charakteristika von Schlaganfallpatienten, die 3 Monate nach dem Schlaganfall mit dem Erhalt von Pflege durch einen Angeh{\"o}rigen assoziiert waren, identifiziert. Zus{\"a}tzlich wurden mit standardisierten Erhebungsinstrumenten positive und negative Erfahrungen der Pflege eines Schlaganfallpatienten sowie die selbsteingesch{\"a}tzte Belastung (deutsche Version des Caregiver Reaction Assessment und Self-Rated Burden Scale) ausgewertet sowie Faktoren, die mit den Pflegeerfahrungen und Belastungen assoziiert sind, evaluiert. Auf europ{\"a}ischer Ebene konnten wir einen Zusammenhang zwischen der Einf{\"u}hrung eines neuen Qualit{\"a}tsindikators und der Verbesserung der Qualit{\"a}t beobachten. Dies galt insbesondere f{\"u}r die erstmalige Einf{\"u}hrung des Qualit{\"a}tsindikators Dysphagiescreening im deutschen -(2006) und schwedischen Schlaganfallregister (2007). Somit gibt es Hinweise darauf, dass das Monitoring der Qualit{\"a}t der Schlaganfallversorgung zu Qualit{\"a}tsverbesserungen bzw. auch zu einer vollst{\"a}ndigeren Dokumentation f{\"u}hrt. Insgesamt konnten wir ein qualitativ hohes Niveau der akuten Schlaganfallversorgung auf Stroke Units in Deutschland gem{\"a}ß evidenzbasierter Qualit{\"a}tsindikatoren feststellen. Patienten mit einem isch{\"a}mischen Schlaganfall, die am Wochenende aufgenommen wurden (p<0,0001), innerhalb von 3 Stunden nach Symptombeginn im Krankenhaus aufgenommen wurden (p<0,0001), hypertensiv waren (p<0,0001), unter einer Hyperlipid{\"a}mie (p<0,0001) litten, wurden mit einer h{\"o}heren Wahrscheinlichkeit auf einer Stroke Unit aufgenommen. Dagegen hatten Patienten mit einem schwereren Schlaganfall (NIHSS>15) eine geringere Chance, auf einer Stroke Unit aufgenommen zu werden (p<0,0001). Der Einfluss struktureller Charakteristika auf die Qualit{\"a}t der Stroke Unit Versorgung war gering. Eine Verbesserung der Qualit{\"a}t k{\"o}nnte noch durch einen h{\"o}heren Anteil der auf einer Stroke Unit aufgenommenen Patienten erreicht werden. Im Rahmen der Nachbefragung von Patienten im regionalen Telemedizinnetzwerk TRANSIT-Stroke stellten Frauen mit 70,1\% den gr{\"o}ßten Anteil der pflegenden Angeh{\"o}rigen dar. 74,4\% der pflegenden Angeh{\"o}rigen war {\"a}lter als 55 Jahre. In univariablen und multivariablen logistischen Regressionsanalysen waren ein hohes Alter, ein niedriger Barthel-Index bei Entlassung sowie das Vorliegen von Diabetes signifikant mit einer h{\"o}heren Wahrscheinlichkeit assoziiert, Pflege von einem Angeh{\"o}rigen zu erhalten. Der Großteil der pflegenden Angeh{\"o}rigen m{\"o}chte den Angeh{\"o}rigen pflegen und ist gleichzeitig dem Risiko gesundheitlicher Probleme ausgesetzt. Circa ein F{\"u}nftel der pflegenden Angeh{\"o}rigen berichtete finanzielle Belastungen aufgrund der Pflegesituation. Depressive Symptome der Patienten waren mit einer h{\"o}heren Belastung der pflegenden Angeh{\"o}rigen hinsichtlich der selbsteingesch{\"a}tzten Belastung und den positiven und negativen Erfahrungen assoziiert. J{\"u}ngere, m{\"a}nnliche Schlaganfallpatienten, mit einem milderen Schlaganfall, die mit einer Partnerin oder Ehepartnerin zusammenleben, scheinen sich oft nicht bewusst zu sein, dass sie Pflege erhalten. M{\"o}glich ist hier, dass sie die Unterst{\"u}tzung und Pflege als „normal" betrachten, w{\"a}hrend der Partner bzw. die Partnerin dies als tats{\"a}chliche Pflege wertet. Schlaganfallregister eignen sich, um die Qualit{\"a}t der Akutversorgung im Zeitverlauf zu monitorieren und Zusammenh{\"a}nge zwischen der Einf{\"u}hrung potentiell qualit{\"a}tsverbessernder Maßnahmen und der tats{\"a}chlichen Qualit{\"a}t darstellen zu k{\"o}nnen. Die Qualit{\"a}t der Stroke Unit Versorgung in Deutschland ist auf einem hohen Niveau. Eine Verbesserung der Qualit{\"a}t k{\"o}nnte noch durch einen h{\"o}heren Anteil der auf einer Stroke Unit aufgenommenen Patienten erreicht werden. Ein Großteil der Schlaganfallpatienten lebt im Anschluss an die Akutversorgung im h{\"a}uslichen Umfeld, in dem pflegende Angeh{\"o}rige eine wichtige Rolle bei der Versorgung spielen. Pflegenden Angeh{\"o}rigen ist ihre Aufgabe wichtig, sind jedoch aufgrund der Pflege zugleich Belastungen hinsichtlich ihrer Gesundheit, der Gestaltung ihres t{\"a}glichen Zeitplans und der Finanzen ausgesetzt.}, subject = {Schlaganfall}, language = {de} } @phdthesis{Eirich2022, author = {Eirich, Philipp}, title = {Accelerated non-Cartesian cardiovascular MR Imaging at 3T and 7T}, doi = {10.25972/OPUS-25397}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-253974}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2022}, abstract = {In this work, accelerated non-Cartesian Magnetic Resonance Imaging (MRI) methods were established and applied to cardiovascular imaging (CMR) at different magnetic field strengths (3T and 7T). To enable rapid data acquisition, highly efficient spiral k-space trajectories were created. In addition, hybrid sampling patterns such as the twisting radial lines (TWIRL) k-space trajectory were studied. Imperfections of the dynamic gradient system of a MR scanner result in k-space sampling errors. Ultimately, these errors can lead to image artifacts in non-Cartesian acquisitions. Among other reasons such as an increased reconstruction complexity, they cause the lack of spiral sequences in clinical routine compared to standard Cartesian imaging. Therefore, the Gradient System Transfer Functions (GSTFs) of both scanners were determined and used for k-space trajectory correction in post-correction as well as in terms of a pre-emphasis. The GSTF pre-emphasis was implemented as a fully automatic procedure, which enabled a precise correction of arbitrary gradient waveforms for double-oblique slice orientations. Consequently, artifacts due to trajectory errors could be mitigated, which resulted in high image quality in non-Cartesian MRI. Additionally, the GSTF correction was validated by measuring pre-emphasized spiral gradient outputs, which showed high agreement with the theoretical gradient waveforms. Furthermore, it could be demonstrated that the performance of the GSTF correction is superior to a simple delay compensation approach. The developed pulse sequences were applied to gated as well as real-time CMR. Special focus lied on the implementation of a spiral imaging protocol to resolve the beating heart of animals and humans in real time and free breathing. In order to achieve real-time CMR with high spatiotemporal resolution, k-space undersampling was performed. For this reason, efficient sampling strategies were developed with the aim to facilitate compressed sensing (CS) during image reconstruction. The applied CS approach successfully removed aliasing artifacts and yielded high-resolution cardiac image series. Image reconstruction was performed offline in all cases such that the images were not available immediately after acquisition at the scanner. Spiral real-time CMR could be performed in free breathing, which led to an acquisition time of less than 1 minute for a whole short-axis stack. At 3T, the results were compared to the gold standard of electrocardiogram-gated Cartesian CMR in breath hold, which revealed similar values for important cardiovascular functional and volumetric parameters. This paves the way to an application of the developed framework in clinical routine of CMR. In addition, the spiral real-time protocol was transferred to swallowing and speech imaging at 3T, and first images were presented. The results were of high quality and confirm the straightforward utilization of the spiral sequence in other fields of MRI. In general, the GSTF correction yielded high-quality images at both field strengths, 3T and 7T. Off-resonance related blurring was mitigated by applying non-Cartesian readout gradients of short duration. At 7T, however, B1-inhomogeneity led to image artifacts in some cases. All in all, this work demonstrated great advances in accelerating the MRI process by combining efficient, undersampled non-Cartesian k-space coverage with CS reconstruction. Trajectory correction using the GSTF can be implemented at any scanner model and enables non-Cartesian imaging with high image quality. Especially MRI of dynamic processes greatly benefits from the presented rapid imaging approaches.}, subject = {Kernspintomografie}, language = {en} } @phdthesis{Viswanathan2022, author = {Viswanathan, Aravindan}, title = {Biochemical and structural characterisation of modules within the SMN complex}, doi = {10.25972/OPUS-19474}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-194749}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2022}, abstract = {Cellular proteome profiling revealed that most biomolecules do not exist in isolation, but rather are incorporated into modular complexes. These assembled complexes are usually very large, consisting of 10 subunits on an average and include either proteins alone, or proteins and nucleic acids. Consequently, such macromolecular assemblies rather than individual biopolymers perform the vast majority of cellular activities. The faithful assembly of such molecular assemblies is often aided by trans-acting factors in vivo, to preclude aggregation of complex components and/or non-cognate interactions. A paradigm for an assisted assembly of a macromolecular machine is the formation of the common Sm/LSm core of spliceosomal and histone-mRNA processing U snRNPs. The key assembly factors united in the Protein Arginine Methyltransferase 5 (PRMT5) and the Survival Motor Neuron (SMN) complexes orchestrate the assembly of the Sm/LSm core on the U snRNAs. Assembly is initiated by the PRMT5-complex subunit pICln, which pre-arranges the Sm/LSm proteins into spatial positions occupied in the mature U snRNPs. The SMN complex subsequently binds these Sm/LSm units, displaces pICln and catalyses the Sm ring closure on the Sm-site of the U snRNA. The SMN complex consists of the eponoymous SMN protein linked in a modular network of interactions with eight other proteins, termed Gemins 2-8 and Unrip. Despite functional and structural characterisation of individual protein components and/or sub-complexes of this assembly machinery, coherent understanding of the structural framework of the core SMN complex remained elusive. The current work, employing a combined approach of biochemical and structural studies, aimed to contribute to the understanding of how distinct modules within the SMN complex coalecse to form the macromolecular SMN complex. A novel atomic resolution (1.5 {\AA}) structure of the human Gemin8:7:6 sub-complex, illustrates how the peripheral Gemin7:6 module is tethered to the SMN complex via Gemin8's C-terminus. In this model, Gemin7 engages with both Gemin6 and Gemin8 via the N- and C-termini of its Sm-fold like domain. This highly conserved interaction mode is reflected in the pronounced sequence conservation and identical biochemical behaviour of similar sub-complexes from divergent species, namely S. pombe and C. elegans. Despite lacking significant sequence similarity to the Sm proteins, the dimeric Gemin7:6 complex share structural resemblance to the Sm heteromers. The hypothesis that the dimeric Gemin7:6 functions as a Sm-surrogate during Sm core assembly could not be confirmed in this work. The functional relevance of the structural mimicry of the dimeric Gemin7:6 sub-complex with the Sm heterodimers therefore still remains unclear. Reduced levels of functional SMN protein is the cause of the devastating neurodegenerative disease, Spinal Muscular Atrophy (SMA). The C-terminal YG-zipper motif of SMN is a major hot-spot for most SMA patient mutations. In this work, adding to the existing inventory of the human and fission yeast YG-box models, a novel 2.2 {\AA} crystal structure of the nematode SMN's YG-box domain adopting the glycine zipper motif has been reported. Furthermore, it could be assessed that SMA patient mutations mapping to this YG-box domain greatly influences SMN's self-association competency, a property reflected in both the human and nematode YG-box biochemical handles. The shared molecular architecture and biochemical behaviour of the nematode SMN YG-box domain with its human and fission yeast counterparts, reiterates the pronounced conservation of this oligomerisation motif across divergent organisms. Apart from serving as a multimerization domain, SMN's YG-box also acts as interaction platform for Gemin8. A systematic investigation of SMA causing missense mutations uncovered that Gemin8's incorporation into the SMN complex is influenced by the presence of certain SMA patient mutations, albeit independent of SMN's oligomerisation status. Consequently, loss of Gemin8 association in the presence of SMA patient mutations would also affect the incorporation of Gemin7:6 sub-complex. Gemin8, therefore sculpts the heteromeric SMN complex by bridging the Gemin7:6 and SMN:Gemin2 sub-units, a modular feature shared in both the human and nematode SMN complexes. These findings provide an important foundation and a prospective structural framework for elucidating the core architecture of the SMN complex in the ongoing Cryo-EM studies.}, subject = {Proteom}, language = {en} } @phdthesis{Tian2019, author = {Tian, Yuehui}, title = {Characterization of novel rhodopsins with light-regulated cGMP production or cGMP degradation}, doi = {10.25972/OPUS-16814}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-168143}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {Photoreceptors are widely occurring in almost all kingdoms of life. They mediate the first step in sensing electromagnetic radiation of different wavelength. Absorption spectra are found within the strongest radiation from the sun and absorption usually triggers downstream signaling pathways. Until now, mainly 6 classes of representative photoreceptors are known: five water-soluble proteins, of these three classes of blue light-sensitive proteins including LOV (light-oxygen-voltage), BLUF (blue-light using FAD), and cryptochrome modules with flavin (vitamin B-related) nucleotides as chromophore; while two classes of yellow and red light-sensitive proteins consist of xanthopsin and phytochrome, respectively. Lastly, as uniquely integral membrane proteins, the class of rhodopsins can usually sense over a wide absorption spectrum, ranging from ultra-violet to green and even red light. Rhodopsins can be further divided into two types, i.e., microbial (type I) and animal (type II) rhodopsins. Rhodopsins consist of the protein opsin and the covalently bound chromophore retinal (vitamin A aldehyde). In this thesis, I focus on identification and characterization of novel type I opsins with guanylyl cyclase activity from green algae and a phosphodiesterase opsin from the protist Salpingoeca rosetta. Until 2014, all known type I and II rhodopsins showed a typical structure with seven transmembrane helices (7TM), an extracellular N-terminus and a cytosolic C-terminus. The proven function of the experimentally characterized type I rhodopsins was membrane transport of ions or the coupling to a transducer which enables phototaxis via a signaling chain. A completely new class of type I rhodopsins with enzymatic activity was identified in 2014. A light-activated guanylyl cyclase opsin was discovered in the fungus Blastocladiella emersonii which was named Cyclop (Cyclase opsin) by Gao et al. (2015), after heterologous expression and rigorous in-vitro characterization. BeCyclop is the first opsin for which an 8 transmembrane helices (8TM) structure was demonstrated by Gao et al. (2015). Earlier (2004), a novel class of enzymatic rhodopsins was predicted to exist in C. reinhardtii by expressed sequence tag (EST) and genome data, however, no functional data were provided up to now. The hypothetical rhodopsin included an N-terminal opsin domain, a fused two-component system with histidinekinase and response regulator domain, and a C-terminal guanylyl cyclase (GC) domain. This suggested that there could be a biochemical signaling cascade, integrating light-induction and ATP-dependent phosphate transfer, and as output the light-sensitive cGMP production. One of my projects focused on characterizing two such opsins from the green algae Chlamydomonas reinhardtii and Volvox carteri which we then named 2c-Cyclop (two-component Cyclase opsin), Cr2c-Cyclop and Vc2c-Cyclop, respectively. My results show that both 2c-Cyclops are light-inhibited GCs. Interestingly, Cr2c-Cyclop and Vc2c-Cyclop are very sensitive to light and ATP-dependent, whereby the action spectra of Cr2c-Cyclop and Vc2c-Cyclop peak at ~540 nm and ~560 nm, respectively. More importantly, guanylyl cyclase activity is dependent on continuous phosphate transfer between histidine kinase and response regulator. However, green light can dramatically block phosphoryl group transfer and inhibit cyclase activity. Accordingly, mutation of the retinal-binding lysine in the opsin domain resulted in GC activity and lacking light-inhibition. A novel rhodopsin phosphodiesterase from the protist Salpingoeca rosetta (SrRhoPDE) was discovered in 2017. However, the previous two studies of 2017 claimed a very weak or absent light-regulation. Here I give strong evidence for light-regulation by studying the activity of SrRhoPDE, expressed in Xenopus laevis oocytes, in-vitro at different cGMP concentrations. Surprisingly, hydrolysis of cGMP shows a ~100-fold higher turnover than that of cAMP. Light can enhance substrate affinity by decreasing the Km value for cGMP from 80 μM to 13 μM, but increases the maximum turnover only by ~30\%. In addition, two key single mutants, SrRhoPDE K296A or K296M, can abolish the light-activation effect by interrupting a covalent bond of Schiff base type to the chromophore retinal. I also demonstrate that SrRhoPDE shows cytosolic N- and C- termini, most likely via an 8-TM structure. In the future, SrRhoPDE can be a potentially useful optogenetic tool for light-regulation of cGMP concentration, possibly after further improvements by genetic engineering.}, language = {en} } @phdthesis{Derakhshani2019, author = {Derakhshani, Shaghayegh}, title = {Measles virus infection enhances dendritic cell migration in a 3D environment}, doi = {10.25972/OPUS-18918}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-189182}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {The respiratory system is amongst the most important compartments in the human body. Due to its connection to the external environment, it is one of the most common portals of pathogen entry. Airborne pathogens like measles virus (MV) carried in liquid droplets exhaled from the infected individuals via a cough or sneeze enter the body from the upper respiratory tract and travel down to the lower respiratory tract and reach the alveoli. There, pathogens are captured by the resident dendritic cells (DCs) or macrophages and brought to the lymph node where immune responses or, as in case of MV, dissemination via the hematopoietic cell compartment are initiated. Basic mechanisms governing MV exit from the respiratory tract, especially virus transmission from infected immune cells to the epithelial cells have not been fully addressed before. Considering the importance of these factors in the viral spread, a complex close-to-in-vivo 3D human respiratory tract model was generated. This model was established using de-cellularized porcine intestine tissue as a biological scaffold and H358 cells as targets for infection. The scaffold was embedded with fibroblast cells, and later on, an endothelial cell layer seeded at the basolateral side. This provided an environment resembling the respiratory tract where MV infected DCs had to transmigrate through the collagen scaffold and transmit the virus to epithelial cells in a Nectin-4 dependent manner. For viral transmission, the access of infected DCs to the recipient epithelial cells is an essential prerequisite and therefore, this important factor which is reflected by cell migration was analyzed in this 3D system. The enhanced motility of specifically MV-infected DCs in the 3D models was observed, which occurred independently of factors released from the other cell types in the models. Enhanced motility of infected DCs in 3D collagen matrices suggested infection-induced cytoskeletal remodeling, as also verified by detection of cytoskeletal polarization, uropod formation. This enforced migration was sensitive to ROCK inhibition revealing that MV infection induces an amoeboid migration mode in DCs. In support of this, the formation of podosome structures and filopodia, as well as their activity, were reduced in infected DCs and retained in their uninfected siblings. Differential migration modes of uninfected and infected DCs did not cause differential maturation, which was found to be identical for both populations. As an underlying mechanism driving this enforced migration, the role of sphingosine kinase (SphK) and sphingosine-1-phosphate (S1P) was studied in MV-exposed cultures. It was shown in this thesis that MV-infection increased S1P production, and this was identified as a contributing factor as inhibition sphingosine kinase activity abolished enforced migration of MV-infected DCs. These findings revealed that MV infection induces a fast push-and-squeeze amoeboid mode of migration, which is supported by SphK/S1P axis. However, this push-and-squeeze amoeboid migration mode did not prevent the transendothelial migration of MV-infected DCs. Altogether, this 3D system has been proven to be a suitable model to study specific parameters of mechanisms involved in infections in an in vivo-like conditions.}, subject = {Dendritische Zelle}, language = {en} } @phdthesis{Baumann2018, author = {Baumann, Christian}, title = {Psychologische und genetische Einflussfaktoren auf die Furchtkonditionierung und die Generalisierung konditionierter Furcht}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-153656}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2018}, abstract = {Bei der Entstehung und Aufrechterhaltung von Furcht und Angsterkrankungen stellt, neben der Furchtkonditionierung, die Generalisierung der konditionierten Furcht einen wesentlichen Mechanismus dar. Die der Generalisierung zugrunde liegenden psychologischen und biologischen Prozesse sind jedoch beim Menschen bisher nur wenig untersucht. Ziel dieser Arbeit war, anhand eines neu entwickelten experimentellen Paradigmas den Einfluss eines psychometrisch bestimmbaren angstspezifischen Faktors sowie der mit Furcht und Angst assoziierten Genotypen Stathmin1, COMT Val158Met und BDNF Val66Met auf die Furchtkonditionierung und Generalisierung konditionierter Furcht zu untersuchen und somit m{\"o}gliche Risikofaktoren f{\"u}r die Entstehung von Angsterkrankungen zu bestimmen. Hierf{\"u}r wurden N = 126 gesunde Versuchspersonen (n = 69 weiblich; mittleres Alter M = 23.05, SD = 3.82) f{\"u}r die genannten Polymorphismen genotypisiert und zu {\"a}ngstlichen und affektiven Symptomen befragt. In einer Akquisitionsphase wurden den Probanden zwei neutrale weibliche Gesichter pr{\"a}sentiert (CS), von denen eines mit einem Schrei sowie einem {\"a}ngstlichen Gesichtsausdruck (UCS) gepaart wurde. Der sich anschließende Generalisierungstest erfolgte anhand von vier Gesichtern, die in der {\"A}hnlichkeit zwischen den beiden CS schrittweise {\"u}bergingen. Die Furchtreaktion wurde {\"u}ber die Bewertung von Valenz, Arousal und Kontingenzerwartung sowie {\"u}ber die Hautleitf{\"a}higkeitsreaktion (SCR) erfasst. Die Analyse der Frageb{\"o}gen anhand einer Hauptachsenanalyse und anhand von Strukturgleichungsmodellen erbrachte eine zweifaktorielle L{\"o}sung, die die Konstrukte Depression und Angst abbildete. Nur der Faktor Angst war mit einer ver{\"a}nderten Furchtkonditionierung und Furchtgeneralisierung assoziiert: Hoch {\"A}ngstliche zeigten eine st{\"a}rkere konditionierte Furchtreaktion (Arousal) und wiesen eine st{\"a}rkere Generalisierung der Valenzeinsch{\"a}tzung und Kontingenzerwartung auf. F{\"u}r den Stathmin1 Genotyp ergaben sich geschlechtsspezifische Effekte. Bei den m{\"a}nnlichen Versuchspersonen zeigte sich in Folge der Akquisition ein st{\"a}rkerer Abfall der Valenz f{\"u}r den CS+ in der Gruppe der Stathmin1 T Alleltr{\"a}ger, die ebenfalls eine st{\"a}rkere Generalisierung der Furchtreaktion, abgebildet in allen verbalen Maßen, aufwiesen. Ein gegenteiliger Befund ergab sich f{\"u}r die Gruppe der Frauen, insofern eine mit dem Stathmin1 C Allel assoziierte h{\"o}here Generalisierung der Valenz, des Arousals und der Kontingenzerwartung festgestellt werden konnte. F{\"u}r den COMT Val158Met Genotyp ergaben sich keine Einfl{\"u}sse auf die Akquisition der konditionierten Furcht. F{\"u}r Tr{\"a}ger des COMT 158Val Allels zeigte sich jedoch eine st{\"a}rkere Generalisierung der Valenz und der Kontingenzerwartung. Auch f{\"u}r den BDNF Val66Met Genotyp konnte keine Ver{\"a}nderung der Furchtakquisition beobachtet werden. Es ergaben sich jedoch Hinweise auf eine erh{\"o}hte Generalisierung der Kontingenzerwartung in der Gruppe der BDNF 66Val Homozygoten. F{\"u}r keinen der beschriebenen Faktoren konnte ein Einfluss auf die Furchtkonditionierung oder deren Generalisierung anhand der SCR abgebildet werden. Unsere Ergebnisse weisen auf einen psychometrisch erfassbaren Faktor und genetische Einfl{\"u}sse hin, die {\"u}ber den Prozess einer st{\"a}rkeren Generalisierung der konditionierten Furcht das Risiko f{\"u}r die Entstehung von Angsterkrankungen erh{\"o}hen k{\"o}nnen. Jedoch sollten die Befunde in gr{\"o}ßeren Stichproben repliziert werden. Neben der fr{\"u}hzeitigen Identifikation von Risikofaktoren sollten in zuk{\"u}nftigen Studien dar{\"u}ber hinaus wirksame Maßnahmen zur Pr{\"a}vention und Intervention entwickelt werden, um diesem Risiko entgegen zu wirken.}, subject = {Konditionierung}, language = {de} } @phdthesis{Tabisz2017, author = {Tabisz, Barbara}, title = {Site Directed Immobilization of BMP-2: Two Approaches for the Production of Osteoinductive Scaffolds}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-153766}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2017}, abstract = {Bone fractures typically heal without surgical intervention. However, pathological situations exist which impede the healing process resulting in so-called non-union fractures. Such fractures are nowadays treated with scaffold material being introduced into the defect area. These scaffolds can be doped with osteogenic factors, such as bone morphogenetic protein (BMP)2. BMP2 belongs to the most osteogenic growth factors known to date. Its medical use, efficiency and safety have been approved by FDA for certain applications. Currently, BMP2 is distributed with a stabilizing scaffold, which is simply soaked with the growth factor. Due to fast release kinetics supraphysiological high doses of BMP2 are required which are causally associated with severe side effects observed in certain applications being most harmful in the area of the cervical spine. These side-effects include inflammation, swelling and breathing problems, leading to disastrous consequences or secondary surgical interventions. Since it could be shown that a retardation of BMP2 release from the scaffold resulted in superior bone forming properties in vivo, it seems obvious to further reduce this release to a minimum. This can be achieved by covalent coupling which in the past was already elaborated using mainly classical EDC/NHS chemistry. Using this technique coupling of the protein occurs non-site-directedly leading mainly to an unpredictable product outcome with variable osteogenic activities. In order to improve the reproducibility of scaffold functionalization by BMP2 we created variants one of which contains a unique unnatural amino acid substitution within the mature polypeptide sequence (BMP2-K3Plk) and another, BMP2-A2C, in which an N-terminal alanine has been substituted by cysteine. These modifications enable site-specific and covalent immobilization of BMP2 e.g. onto polymeric beads. Both proteins were expressed in E. coli, renatured and purified by cation-exchange chromatography. Both variants were extensively analyzed in terms of purity and biological activity which was tested by in vitro interaction analyses as well as in cell based assays. Both proteins could be successfully coupled to polymeric beads. The different BMP2 functionalized beads were shown to interact with the ectodomain of the type I receptor BMPR-IA in vitro indicating that the biological activity of both BMP2 variants retained upon coupling. Both functionalized beads induced osteogenic differentiation C2C12 cells but only of those cells which have been in close contact to the particular beads. This strongly indicates that the BMP2 variant are indeed covalently coupled and not just adsorbed. We claim that we have developed a system for a site-specific and covalent immobilization of BMP-2 onto solid scaffolds, potentially eliminating the necessity of high-dose scaffold loading. Since immobilized proteins are protected from removal by extracellular fluids, their activities now rely mainly on the half-life of the used scaffold and the rate of proteolytic degradation. Assuming that due to prolonged times much lower loading capacities might be required we propose that the immobilization strategy employed in this work may be further refined and optimized to replace the currently used BMP2-containing medical products.}, subject = {Protein chemistry}, language = {en} } @phdthesis{Uthe2018, author = {Uthe, Friedrich Wilhelm}, title = {Identifikation synthetisch-letaler Interaktionen mit dem Tumorsuppressor APC und Beeinflussung von MYC-Proteinmengen durch Translationsinhibition im kolorektalen Karzinom}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-166451}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2018}, abstract = {Der Tumorsupressor APC ist in der Mehrzahl aller F{\"a}lle kolorektaler Karzinome bereits in der initialen Phase der Karzinogenese mutiert. Diese Mutationen f{\"u}hren zu einer aberranten Aktivierung des Wnt-Signalweges sowie zu weiteren die Karzinogenese vorrantreibenden Aktivit{\"a}ten, beispielsweise einem ver{\"a}nderten Migrationsverhalten. Dieser Dissertation zu Grunde liegt die Idee, dass durch die Trunkierung des APC-Proteins aber auch Abh{\"a}ngigkeiten von Genaktivit{\"a}ten entstehen, die zuvor entbehrlich waren. Solche synthetisch letalen Gene sollten in einem high-content shRNA-Screen gefunden werden. F{\"u}r die Durchf{\"u}hrung des Screens wurde ein von der SW480 Kolonkarzinomzelllinie abgeleitetes, isogenes Zellsystem generiert, welches durch Induktion mit Doxyzyklin das vollst{\"a}ndige APC-Allel (FL-APC) exprimiert. Infolge dieser Expression zeigen die Zellen einen weniger malignen Ph{\"a}notyp. Dies spiegelt sich darin wider, dass die Zellen durch FL-APC Expression in ihrer Wnt-Signalwegsaktivit{\"a}t eingeschr{\"a}nkt werden. Doxyzyklininduzierte Zellen sind schlechter in der Lage ohne Adh{\"a}sion zu proliferieren als nicht induzierte Zellen. Andererseits ist ihre F{\"a}higkeit einem FKS-gradienten entlang zu migrieren verbessert. Der shRNA-Screen wurde mit der Decipher shRNA-Bibliothek durchgef{\"u}hrt. Diese enth{\"a}lt 27.500 verschiedene shRNAs mit Interferenzaktivit{\"a}t gegen 5.000 mRNAs, die potentiell pharmakologisch inhibierbare Proteine kodieren. Die besten zwei Kandidaten f{\"u}r eine synthetisch letale Interaktion mit trunkiertem APC, BCL2L1 und EIF2B5 wurden im Verlauf einer Masterarbeit bzw. direkt in dieser Disseration validiert. EIF2B5 zeigte in vitro nach Depletion durch unterschiedliche shRNAs einen di erentiellen Proliferationse ekt bei FL-APC induzierten im Vergleich zu kontrollbehandelten Zellen. Dieser di erentielle E ekt konnte in einem weiteren Modellsystem, SW480 Zellen mit konstitutiver FL-APC Expression, ebenfalls validiert werden. Durch Expression einer shRNA mit Aktivit{\"a}t gegen EIF2B5 werden in beiden Zellsystem die unfolded protein response (UPR) Gene DDIT3 und splXBP1 aktiviert. Interessanterweise werden durch die Expression von FL-APC diese Gene reprimiert. Im Promotor der EIF2B5-mRNA be ndet sich eine Bindestelle f{\"u}r MYC. Es ist denkbar, dass durch die Expression von FL-APC eine globale Ver{\"a}nderung der Genexpression vorgenommen wird, die einerseits eine Repression von EIF2B5 nach sich zieht aber andererseits eine hierdurch ausgel{\"o}ste ER-Stress Antwort verhindert. Eine Inhibition von EIF2B5 ohne diese Adaption andererseits f{\"u}hrt nach diesem Model zu einer UPR-aktivierten Apoptose. In einem zweiten Projekt wurde das {\"u}berraschende Verhalten von Kolonkarzinomzellen untersucht, die nach Zugabe von BEZ235, einem dualen PI3K/mTOR Inhibitor, trotz gegenteiliger Erwartungen MYC-Proteinmengen erh{\"o}hen. Eine Repression wurde erwar- tet, weil die Inhibition von PI3K einerseits zu einer proteasomalen Destabiliserung und andererseits die mTOR Inhibition zu einer verringerten Synthese von MYC f{\"u}hren sollte. W{\"a}hrend bereits gezeigt werden konnte, dass durch einen FOXO-vermittelten Mechanismus MAPK-abh{\"a}ngig die MYC-Expression verst{\"a}rkt wird, wurde in dieser Dissertation die erwartete Translationsinhibition untersucht. BEZ235 inhibiert zwar CAP-abh{\"a}ngige Translation, das MYC Protein wird jedoch aufgrund einer IRES-vermittelten Translation weiterhin exprimiert. Silvestrol, ein Inhibitor der Helikase eIF4A andererseits interveniert mit CAP- und IRES-abh{\"a}ngiger Translation und kann die MYC-Proteinkonzentrationen verringern. Wir konnten zudem feststellen, dass die Applikation von Silvestrol auch in vivo m{\"o}glich und wirksam ist und zudem tolleriert wird. Dies gibt Anlass zur Ho nung, dass eine Intervention der Translation auch im Menschen eine valide Strategie zur Behandlung MYC-getriebener Tumore sein k{\"o}nnte.}, subject = {Colonkrebs}, language = {de} } @phdthesis{TawkTaouk2018, author = {Tawk [Taouk], Caroline S.}, title = {The role of host-stress in the infection by the bacterial pathogen \(Shigella\) \(flexneri\)}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-151107}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2018}, abstract = {The human-bacterial pathogen interaction is a complex process that results from a prolonged evolutionary arms race in the struggle for survival. The pathogen employs virulence strategies to achieve host colonization, and the latter counteracts using defense programs. The encounter of both organisms results in drastic physiological changes leading to stress, which is an ancient response accompanying infection. Recent evidence suggests that the stress response in the host converges with the innate immune pathways and influences the outcome of infection. However, the contribution of stress and the exact mechanism(s) of its involvement in host defense remain to be elucidated. Using the model bacterial pathogen Shigella flexneri, and comparing it with the closely related pathogen Salmonella Typhimurium, this study investigated the role of host stress in the outcome of infection. Shigella infection is characterized by a pronounced pro-inflammatory response that causes intense stress in host tissues, particularly the intestinal epithelium, which constitutes the first barrier against Shigella colonization. In this study, inflammatory stress was simulated in epithelial cells by inducing oxidative stress, hypoxia, and cytokine stimulation. Shigella infection of epithelial cells exposed to such stresses was strongly inhibited at the adhesion/binding stage. This resulted from the depletion of sphingolipidrafts in the plasma membrane by the stress-activated sphingomyelinases. Interestingly, Salmonella adhesion was not affected, by virtue of its flagellar motility, which allowed the gathering of bacteria at remaining membrane rafts. Moreover, the intracellular replication of Shigella lead to a similar sphingolipid-raft depletion in the membrane across adjacent cells inhibiting extracellular bacterial invasion. Additionally, this study shows that Shigella infection interferes with the host stress granule-formation in response to stress. Interestingly, infected cells exhibited a nuclear depletion of the global RNA-binding stress-granule associated proteins TIAR and TIA-1 and their accumulation in the cytoplasm. Overall, this work investigated different aspects of the host stress-response in the defense against bacterial infection. The findings shed light on the importance of the host stress-pathways during infection, and improve the understanding of different strategies in host-pathogen interaction.}, subject = {Shigella flexneri}, language = {en} } @phdthesis{Glueck2018, author = {Gl{\"u}ck, Lucia}, title = {Aktivierung des MEK5/ Erk5-Signalwegs durch inhibitorische Substanzen des Mevalonatstoffwechsels}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-162084}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2018}, abstract = {Die Osteoporose ist eine Erkrankung, die durch verminderte Dichte und erh{\"o}hte Fragilit{\"a}t des Knochens gekennzeichnet ist. Sie z{\"a}hlt zu den h{\"a}ufigsten Erkrankungen weltweit und geht mit erheblicher Einschr{\"a}nkung der Lebensqualit{\"a}t und erh{\"o}hter Mortalit{\"a}t einher. Eine Behandlungsm{\"o}glichkeit dieses schwerwiegenden Krankheitsbilds ist die Therapie mit Bisphosphonaten. Diese hemmen mit ihren antiresorptiven Eigenschaften den Knochenabbau und f{\"o}rdern vermutlich gleichzeitig den Knochenaufbau. Obwohl schon lange die Wirkungsweise der Bisphosphonate erforscht wird, ist noch nicht sicher gekl{\"a}rt, wie beispielsweise osteoanabole oder antitumor{\"o}se Effekte vermittelt werden. Einen Erkl{\"a}rungsansatz bietet der MEK5/ Erk5-Signalweg. Diesem werden unter anderem antiangiogenetische, antiinflammatorische und antiproliferative Eigenschaften zugesprochen. In fr{\"u}heren Studien konnte gezeigt werden, dass Statine Erk5 und Erk5-abh{\"a}ngige Gene aktivieren k{\"o}nnen. Statine wiederum inhibieren ebenfalls den Mevalonatstoffwechsel, jedoch weiter upstream als Bisphosphonate. Da Statine zudem osteoanabole Effekte aufweisen, lag die These nahe, dass auch Bisphosphonate ihre Wirkung {\"u}ber den MEK5/Erk5-Signalweg vermitteln k{\"o}nnten. Die These konnte im Rahmen dieser Arbeit best{\"a}tigt werden: Stickstoffhaltige, nicht aber stickstofffreie Bisphosphonate aktivieren Erk5 sowohl in Endothelzellen als auch in Osteoblasten. Es gilt jedoch zu bedenken, dass eine Weiterentwicklung der Substanzen mit verbesserter Aufnahme in die Zelle zur Vermeidung von Apoptose-Induktion anzustreben ist. Des Weiteren konnte gezeigt werden, dass ein Knock-down der FDPS, dem Angriffspunkt der Bisphosphonate im Mevalonatstoffwechsel, ebenfalls eine Erk5-Phosphorylierung zur Folge hat. Durch Inhibition der FDPS wird die Prenylierung kleiner G-Proteine wie Cdc42 unterbunden, was eine ver{\"a}nderte Funktion der Proteine zur Folge hat. Ein Knock-down von Cdc42 mittels siRNA f{\"u}hrt wiederum zu einer Aktivierung von Erk5. Auf diese Weise wurde nicht nur ein neuer Wirkungsweg der Bisphosphonate identifiziert, sondern auch ein m{\"o}glicher Aktivierungsmechanismus der MEK5/ Erk5-Signalkaskade aufgedeckt. Erk5 wandert nach seiner Aktivierung in den Zellkern und beeinflusst dort die Genexpression. Im Rahmen dieser Arbeit wurden knochenrelevante Gene identifiziert, die durch Zoledronat-Stimulation induziert werden konnten. Zu diesen z{\"a}hlen INPP4B, das die Osteoklastogenese inhibiert, und PTHLH sowie FOSL1, welche die Osteoblastogenese f{\"o}rdern. Somit kann davon ausgegangen werden, dass die Aktivierung des MEK5/ Erk5-Signalwegs durch Zoledronat eine Geninduktion zur Folge hat, die sowohl die osteoanabole Wirkung unterst{\"u}tzt, als auch die katabolen Effekte hemmt. Auf diese Weise konnte neben den bereits bekannten Wirkungswegen der Bisphosphonate ein neuer identifiziert werden, der auch einen m{\"o}glichen Ansatz f{\"u}r weitere, bisher ungekl{\"a}rte Effekte von Bisphosphonaten darstellt.}, subject = {Bisphosphonate}, language = {de} } @phdthesis{Raab2018, author = {Raab, Annette}, title = {The role of Rgs2 in animal models of affective disorders}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-152550}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2018}, abstract = {Anxiety and depressive disorders result from a complex interplay of genetic and environmental factors and are common mutual comorbidities. On the level of cellular signaling, regulator of G protein signaling 2 (Rgs2) has been implicated in human and rodent anxiety as well as rodent depression. Rgs2 negatively regulates G protein-coupled receptor (GPCR) signaling by acting as a GTPase accelerating protein towards the Gα subunit. The present study investigates, whether mice with a homozygous Rgs2 deletion (Rgs2-/-) show behavioral alterations as well as an increased susceptibility to stressful life events related to human anxiety and depressive disorders and tries to elucidate molecular underlying's of these changes. To this end, Rgs2-/- mice were characterized in an aversive-associative learning paradigm to evaluate learned fear as a model for the etiology of human anxiety disorders. Spatial learning and reward motivated spatial learning were evaluated to control for learning in non-aversive paradigms. Rgs2 deletion enhanced learning in all three paradigms, rendering increased learning upon deletion of Rgs2 not specific for aversive learning. These data support reports indicating increased long-term potentiation in Rgs2-/- mice and may predict treatment response to conditioning based behavior therapy in patients with polymorphisms associated with reduced RGS2 expression. Previous reports of increased innate anxiety were corroborated in three tests based on the approach-avoidance conflict. Interestingly, Rgs2-/- mice showed novelty-induced hypo-locomotion suggesting neophobia, which may translate to the clinical picture of agoraphobia in humans and reduced RGS2 expression in humans was associated with a higher incidence of panic disorder with agoraphobia. Depression-like behavior was more distinctive in female Rgs2-/- mice. Stress resilience, tested in an acute and a chronic stress paradigm, was also more distinctive in female Rgs2-/- mice, suggesting Rgs2 to contribute to sex specific effects of anxiety disorders and depression. Rgs2 deletion was associated with GPCR expression changes of the adrenergic, serotonergic, dopaminergic and neuropeptide Y systems in the brain and heart as well as reduced monoaminergic neurotransmitter levels. Furthermore, the expression of two stress-related microRNAs was increased upon Rgs2 deletion. The aversive-associative learning paradigm induced a dynamic Rgs2 expression change. The observed molecular changes may contribute to the anxious and depressed phenotype as well as promote altered stress reactivity, while reflecting an alter basal stress level and a disrupted sympathetic tone. Dynamic Rgs2 expression may mediate changes in GPCR signaling duration during memory formation. Taken together, Rgs2 deletion promotes increased anxiety-like and depression-like behavior, altered stress reactivity as well as increased cognitive function.}, subject = {Angst}, language = {en} } @phdthesis{Huang2018, author = {Huang, Hua}, title = {Comparative investigation of the chemical composition and the water permeability of fruit and leaf cuticles}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-152948}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2018}, abstract = {The plant cuticle is a continuous extracellular protective layer covering the outermost surfaces of higher plants that are in contact with the surrounding atmosphere. The primary function of the cuticular lipid membrane, which is mainly composed of biopolymer cutin and cuticular waxes, is to protect the plant organs against uncontrolled water loss. The chemical composition and the biophysical properties of cuticular waxes affect the rate of water diffusion across the cuticle. Fruit transpiration plays an important role in the development and the maintenance of fruit quality. The fruit has been suggested to present better dehydration stress tolerance than the leaf. However, the differences in transpiration and the chemical composition of cuticular waxes between fruit and leaf have yet to be comprehensively investigated. The present study aims to investigate the water permeability and cuticular wax composition of fruit and leaf cuticles of a wide range of plant species and to elucidate the different roles of the cuticular wax components in the transpiration barrier. To address these objectives, fruit and leaf samples from 17 species were investigated. The cuticular transpiration of intact fruits and astomatous adaxial leaf surfaces and the minimum leaf conductance obtained by leaf drying curves for intact leaves were gravimetrically determined for a variety of plant species. The chemical composition of cuticular waxes of fruits and leaves was thoroughly analysed by gas chromatography with flame ionization and mass spectrometry. The water permeability of fruits ranged from 3.7 x 10-5 m s-1 (Prunus domestica subsp. syriaca) to 37.4 x 10-5 m s-1 (Coffea arabica), whereas permeability for leaves varied between 1.6 x 10-5 m s-1 (Cornus officinalis) and 4.5 x 10-5 m s-1 (Prunus domestica subsp. syriaca (L.)). The interspecies range of water permeability of fruits was significantly higher than that of leaves. Chemical analyses of the cuticular waxes demonstrated that fatty acids, primary alcohols, n-alkanes, aldehydes and alkyl esters were the predominant very-long-chain aliphatic compound classes of fruit and leaf surfaces. Sterols, such as β-sitosterol and campesterol, and triterpenoids, such as oleanolic acid, ursolic acid, α-amyrin and ß-amyrin, were the major cyclic compound classes in the cuticular wax membrane. The amount and composition of cuticular waxes of both fruits and leaves varied at an intraspecific level. There were no significant correlations between the total cuticular wax load or the individual cuticular wax composition and the water permeability of fruits or leaves independently or together. After combining the fruit and leaf data set, a significant correlation between the average chain length of very-long-chain aliphatic compounds and permeabilities was detected, i.e. the longer the average chain length, the lower the water permeability. Interestingly, n-Nonacosane (C29) was abundantly detected in fruit waxes of Rosaceae species. These fruits exhibited a relatively low transpiration level, which was very close to their leaf cuticular permeability. The present study suggests that the lower cuticular permeability of leaves, in comparison to that of fruits, may be attributed to the longer average chain length of aliphatic compounds. The accumulation of total wax, triterpenoids and aliphatic compounds may not contribute to the transpiration barrier directly. The present results are highly consistent with the previous model assumptions for the cuticular structure and transport barrier. Furthermore, this comparative study on leaf and fruit cuticles provides further insights linking the cuticular wax chemistry to the physiological properties of the plant cuticle.}, subject = {Cuticle}, language = {en} } @phdthesis{Lux2022, author = {Lux, Thomas Joachim}, title = {Characterization of Junctional Proteins in the Dorsal Root Ganglion of Rats with Traumatic Nerve Injury}, doi = {10.25972/OPUS-25192}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-251926}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2022}, abstract = {In my thesis, I characterized aGPCRs Adgrl1 and Adgrl3, tight junction proteins and the blood-DRG-barrier in rats' lumbar dorsal root ganglions after traumatic neuropathy. In contrast to the otherwise tightly sealed barriers shielding neural tissues, the dorsal root ganglion's neuron rich region is highly permeable in its healthy state. Furthermore, the DRG is a source of ectopic signal generation during neuropathy; the exact origin of which is still unclear. I documented expression of Adgrl1 and Adgrl3 in NF200 + , CGRP + and IB4 + neurons. One week after CCI, I observed transient downregulation of Adgrl1 in non-peptidergic nociceptors (IB4+). In the context of previous data, dCirl deletion causing an allodynia-like state in Drosophila, our research hints to a possible role of Adgrl1 nociceptive signal processing and pain resolution in neuropathy. Furthermore, I demonstrated similar claudin-1, claudin-12, claudin-19, and ZO-1 expression of the dorsal root ganglion's neuron rich and fibre rich region. Claudin-5 expression in vessels of the neuron rich region was lower compared to the fibre rich region. Claudin-5 expression was decreased one week after nerve injury in vessels of the neuron rich region while permeability for small and large injected molecules remained unchanged. Nevertheless, we detected more CD68+ cells in the neuron rich region one week after CCI. As clinically relevant conclusion, we verified the high permeability of the neuron rich regions barrier as well as a vessel specific claudin-5 downregulation after CCI. We observed increased macrophage invasion into the neuron rich region after CCI. Furthermore, we identified aGPCR as potential target for further research and possible treatments for neuropathy, which should be easily accessible due to the blood-DRG-barriers leaky nature. Its precise function in peripheral tissues, its mechanisms of activation, and its role in pain resolution should be evaluated further.}, subject = {Neuropathy}, language = {en} } @phdthesis{Slaby2017, author = {Slaby, Beate Magdalena}, title = {Exploring the microbiome of the Mediterranean sponge \(Aplysina\) \(aerophoba\) by single-cell and metagenomics}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-151869}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2017}, abstract = {Sponges (phylum Porifera) are evolutionary ancient, sessile filter-feeders that harbor a largely diverse microbial community within their internal mesohyl matrix. Throughout this thesis project, I aimed at exploring the adaptations of these symbionts to life within their sponge host by sequencing and analyzing the genomes of a variety of bacteria from the microbiome of the Mediterranean sponge Aplysina aerophoba. Employed methods were fluorescence-activated cell sorting with subsequent multiple displacement amplification and single-cell / 'mini-metagenome' sequencing, and metagenomic sequencing followed by differential coverage binning. These two main approaches both aimed at obtaining genome sequences of bacterial symbionts of A. aerophoba, that were then compared to each other and to references from other environments, to gain information on adaptations to the host sponge environment and on possible interactions with the host and within the microbial community. Cyanobacteria are frequent members of the sponge microbial community. My 'mini-metagenome' sequencing project delivered three draft genomes of "Candidatus Synechococcus spongiarum," the cyanobacterial symbiont of A. aerophoba and many more sponges inhabiting the photic zone. The most complete of these genomes was compared to other clades of this symbiont and to closely related free-living cyanobacterial references in a collaborative project published in Burgsdorf I*, Slaby BM* et al. (2015; *shared first authorship). Although the four clades of "Ca. Synechococcus spongiarum" from the four sponge species A. aerophoba, Ircinia variabilis, Theonella swinhoei, and Carteriospongia foliascens were approximately 99\% identical on the level of 16S rRNA gene sequences, they greatly differed on the genomic level. Not only the genome sizes were different from clade to clade, but also the gene content and a number of features including proteins containing the eukaryotic-type domains leucine-rich repeats or tetratricopeptide repeats. On the other hand, the four clades shared a number of features such as ankyrin repeat domain-containing proteins that seemed to be conserved also among other microbial phyla in different sponge hosts and from different geographic locations. A possible novel mechanism for host phagocytosis evasion and phage resistance by means of an altered O antigen of the lipopolysaccharide was identified. To test previous hypotheses on adaptations of sponge-associated bacteria on a broader spectrum of the microbiome of A. aerophoba while also taking a step forward in methodology, I developed a bioinformatic pipeline to combine metagenomic Illumina short-read sequencing data with PacBio long-read data. At the beginning of this project, no pipelines to combine short-read and long-read data for metagenomics were published, and at time of writing, there are still no projects published with a comparable aim of un-targeted assembly, binning and analysis of a metagenome. I tried a variety of assembly programs and settings on a simulated test dataset reflecting the properties of the real metagenomic data. The developed assembly pipeline improved not only the overall assembly statistics, but also the quality of the binned genomes, which was evaluated by comparison to the originally published genome assemblies. The microbiome of A. aerophoba was studied from various angles in the recent years, but only genomes of the candidate phylum Poribacteria and the cyanobacterial sequences from my above-described project have been published to date. By applying my newly developed assembly pipeline to a metagenomic dataset of A. aerophoba consisting of a PacBio long-read dataset and six Illumina short-read datasets optimized for subsequent differential coverage binning, I aimed at sequencing a larger number and greater diversity of symbionts. The results of this project are currently in review by The ISME Journal. The complementation of Illumina short-read with PacBio long-read sequencing data for binning of this highly complex metagenome greatly improved the overall assembly statistics and improved the quality of the binned genomes. Thirty-seven genomes from 13 bacterial phyla and candidate phyla were binned representing the most prominent members of the microbiome of A. aerophoba. A statistical comparison revealed an enrichment of genes involved in restriction modification and toxin-antitoxin systems in most symbiont genomes over selected reference genomes. Both are defense features against incoming foreign DNA, which may be important for sponge symbionts due to the sponge's filtration and phagocytosis activity that exposes the symbionts to high levels of free DNA. Also host colonization and matrix utilization features were significantly enriched. Due to the diversity of the binned symbiont genomes, a within-symbionts genome comparison was possible, that revealed three guilds of symbionts characterized by i) nutritional specialization on the metabolization of carnitine, ii) specialization on sulfated polysaccharides, and iii) apparent nutritional generalism. Both carnitine and sulfated polysaccharides are abundant in the sponge extracellular matrix and therefore available to the sponge symbionts as substrates. In summary, the genomes of the diverse community of symbionts in A. aerophoba were united in their defense features, but specialized regarding their nutritional preferences.}, subject = {Metagenom}, language = {en} } @phdthesis{Schedler2018, author = {Schedler, Anette}, title = {Analyse von Wirt-Pathogen-Interaktionen zur Untersuchung des Einflusses von \(Aspergillus\) \(fumigatus\) auf die H{\"a}mostase}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-152512}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2018}, abstract = {Als H{\"a}mostase bezeichnet man die Gesamtheit der Reaktionen, die zu einer effektiven Blutgerinnung beitragen. Sie l{\"a}sst sich in die prim{\"a}re (thrombozyt{\"a}re) H{\"a}mostase, in die sekund{\"a}re (plasmatische) H{\"a}mostase und in das Fibrinolysesystem einteilen. Thrombozyten, oder auch Pl{\"a}ttchen genannt, spielen hierbei eine entscheidende Rolle. Sie binden an die durch eine Verletzung einer Blutgef{\"a}ßwand freigelegten Faktoren, werden so aktiviert und aggregieren mit weiteren Thrombozyten, wodurch ein Thrombus entsteht, der die Verletzung verschließt. Zudem besitzen Thrombozyten Immunokompetenz und k{\"o}nnen mit anderen Immunzellen interagieren, {\"u}ber Rezeptoren Pathogene erkennen und sie direkt angreifen. Einer dieser Pathogene ist der opportunistische Pilz Aspergillus fumigatus. Dieser bildet im Verlauf seines Lebenszyklus 2,5 -3 µm kleine Konidien aus, die mit dem Wind verbreitet werden und bis tief in die Alveolen der menschlichen Lunge eingeatmet werden k{\"o}nnen. W{\"a}hrend diese Konidien im gesunden Menschen durch das Immunsystem und andere Abwehrmechanismen eliminiert werden, k{\"o}nnen sie im immunsupprimierten Patienten, z. B. bei Patienten nach einer h{\"a}matopoietischen Stammzelltransplantation, auskeimen und verschiedene Krankheiten, sogenannte Aspergillosen, ausl{\"o}sen mit der Invasiven Aspergillose (IA) als schwerwiegendste Form. Diese ist assoziiert mit Gewebezerst{\"o}rungen, Blutungen und Thrombenbildung am Ort der Infektion. Diese Komplikationen k{\"o}nnten auf einer {\"u}berh{\"o}hten Immunantwort des Wirtes, auf dem mechanischen Eindringen des Pilzes in das Gewebe und die Blutgef{\"a}ße oder auf einer {\"A}nderung der lokalen H{\"a}mostase durch sezernierte hydrolytische Enzyme (Proteasen) oder Sekund{\"a}rmetabolite von A. fumigatus beruhen. Um diese {\"A}nderung der H{\"a}mostase im Verlauf einer IA zu analysieren, wurde der Einfluss von Morphologien (Konidien, geschwollene Konidien, Keimschl{\"a}uche und Hyphen), deren {\"U}berst{\"a}nde, sowie von proteolytisch aktivem {\"U}berstand und von verschiedenen Sekund{\"a}rmetaboliten von A. fumigatus auf die sekund{\"a}re H{\"a}mostase und die Aggregation und Aktivit{\"a}t von humanen Thrombozyten untersucht. Bei der Analyse der sekund{\"a}ren H{\"a}mostase konnte f{\"u}r keinen dieser eingesetzten Effektoren ein Einfluss festgestellt werden. Bei der Analyse der prim{\"a}ren H{\"a}mostase und dem Einsatz von Morphologien und ihrer {\"U}berst{\"a}nde konnte f{\"u}r Hyphen und ihren ankonzentrierten {\"U}berstand eine aggregationssteigernde Wirkung auf Thrombozyten beobachtet werden, die m{\"o}glicherweise auf Bestandteile der Zellwand von A. fumigatus, wie z. B. β-Galactosaminogalactan (GAG) zur{\"u}ckzuf{\"u}hren ist. Proteolytisch aktiver {\"U}berstand f{\"u}hrte zu einer Aktivierung der Thrombozyten, die zum Teil auf die PrtT-abh{\"a}ngige proteolytische Spaltung und damit die Aktivierung der Thrombinrezeptoren PAR1 und/oder PAR4 auf der Thrombozytenoberfl{\"a}che, zum Teil aber auch auf GAG zur{\"u}ckzuf{\"u}hren sein kann. Von den hier verwendeten Mykotoxinen Gliotoxin, Fumagillin, Citrinin, Verruculogen und Deoxynivalenol konnte f{\"u}r Gliotoxin ein negativer Einfluss auf die Thrombozytenaktivit{\"a}t nachgewiesen werden. Dieses Toxin inhibierte die Aggregation und die Aktivit{\"a}t der Thrombozyten, m{\"o}glicherweise durch die Bildung von Disulfid-Br{\"u}ckenbindungen oder auch durch die Bildung von reaktiven Sauerstoffspezies. Zudem wurde im Verlauf dieser Arbeit eine direkte Interaktion von Gliotoxin mit den ADP-Rezeptoren P2Y1 und P2Y12 sowie mit dem Integrin αIIbβ3 postuliert, die so zwar nicht best{\"a}tigt, aber auch nicht vollst{\"a}ndig wiederlegt werden konnte. Die hier dargestellten Ergebnisse zeigen deutlich zwei Wirkungen von A. fumigatus auf humane Thrombozyten: zum einen eine Aktivierung oder auch verst{\"a}rkte Aggregation durch sezernierte Proteasen oder Zellwandbestandteile, zum anderen eine Hemmung durch Gliotoxin, was die bei einer IA beobachtete Thrombenbildung sowie die Blutungen erkl{\"a}ren kann. Die Interaktion der aktivierten Thrombozyten mit den Zellen des Immunsystems sowie die zytotoxischen Eigenschaften von Gliotoxin k{\"o}nnten zudem f{\"u}r die beobachtete Gewebezerst{\"o}rung verantwortlich sein. Dennoch ist weitere Forschung in diesem Gebiet unabdingbar, um die pathophysiologische {\"A}nderung der lokalen H{\"a}mostase durch A. fumigatus und seine Wirkung auf humane Thrombozyten besser zu verstehen und so eine schnellere Erkennung und Behandlung von Aspergillosen zu erm{\"o}glichen.}, subject = {Aspergillus fumigatus}, language = {de} } @phdthesis{Wiese2022, author = {Wiese, Teresa}, title = {Pharmacological targeting of acid sphingomyelinase increases CD4\(^+\) Foxp3\(^+\) regulatory T cell subsets in patients with major depression}, doi = {10.25972/OPUS-23347}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-233471}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2022}, abstract = {Lack of acid sphingomyelinase (ASM) activity, either through genetic deficiency or through pharmacological inhibition, is linked with increased activity and frequency of Foxp3+ regulatory T cells (Treg) among cluster of differentiation (CD) 4+ T cells in mice in vivo and in vitro1. Thus, pharmacological blockade of ASM activity, which catalyzes the cleavage of sphingomyelin to ceramide and phosphocholine, might be used as a new therapeutic mechanism to correct numeric and/ or functional Treg de-ficiencies in diseases like multiple sclerosis or major depression. In the present study, the effect of pharmacological inhibition of ASM in humans, in vitro and in vivo, was analyzed. In the in vitro experiments, peripheral blood mono-nuclear cells (PBMC) of healthy human blood donors were treated with two widely prescribed antidepressants with high (sertraline, Ser) or low (citalopram, Cit) capaci-ty to inhibit ASM activity. Similar to the findings in mice an increase in the frequency of Treg among human CD4+ T cells upon inhibition of ASM activity was observed. For the analysis in vivo, a prospective study of the composition of the CD4+ T cell com-partment of patients treated for major depression was done. The data show that pharmacological inhibition of ASM activity was superior to antidepressants with little or no ASM-inhibitory activity in increasing CD45RA- CD25high effector Treg (efTreg) frequencies among CD4+ T cells to normal levels. Independently of ASM inhibition, correlating the data with the clinical response, i.e. improvement of the Hamilton rat-ing scale for depression (HAMD) by at least 50 per cent (\%) after four weeks of treatment, it was found that an increase in efTreg frequencies among CD4+ cells dur-ing the first week of treatment identified patients with a clinical response. Regarding the underlying mechanism, it could be found that the positive effect of ASM inhibition on Treg required CD28 co-stimulation suggesting that enhanced CD28 co-stimulation was the driver of the observed increase in the frequency of Treg among human CD4+ T cells. Inhibition of ASM activity was further associated with changes in the expression and shuttling of CTLA-4, a key inhibitory molecule ex-pressed by Treg, between cellular compartments but the suppressive activity of CTLA-4 through its transendocytosis activity was unaffected by the inhibition of ASM activity. In summary, the frequency of (effector) Treg among CD4+ T cells in mice and in hu-mans is increased after inhibition of ASM activity suggesting that ASM blockade might beneficially modulate autoimmune diseases and depression-promoting in-flammation.}, subject = {Treg}, language = {en} } @article{ShaikhVargasMokhtarietal.2021, author = {Shaikh, Haroon and Vargas, Juan Gamboa and Mokhtari, Zeinab and Jarick, Katja J. and Ulbrich, Maria and Mosca, Josefina Pe{\~n}a and Viera, Estibaliz Arellano and Graf, Caroline and Le, Duc-Dung and Heinze, Katrin G. and B{\"u}ttner-Herold, Maike and Rosenwald, Andreas and Pezoldt, Joern and Huehn, Jochen and Beilhack, Andreas}, title = {Mesenteric Lymph Node Transplantation in Mice to Study Immune Responses of the Gastrointestinal Tract}, series = {Frontiers in Immunology}, volume = {12}, journal = {Frontiers in Immunology}, issn = {1664-3224}, doi = {10.3389/fimmu.2021.689896}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-244869}, year = {2021}, abstract = {Mesenteric lymph nodes (mLNs) are sentinel sites of enteral immunosurveillance and immune homeostasis. Immune cells from the gastrointestinal tract (GIT) are constantly recruited to the mLNs in steady-state and under inflammatory conditions resulting in the induction of tolerance and immune cells activation, respectively. Surgical dissection and transplantation of lymph nodes (LN) is a technique that has supported seminal work to study LN function and is useful to investigate resident stromal and endothelial cell biology and their cellular interactions in experimental disease models. Here, we provide a detailed protocol of syngeneic mLN transplantation and report assays to analyze effective mLN engraftment in congenic recipients. Transplanted mLNs allow to study T cell activation and proliferation in preclinical mouse models. Donor mLNs proved viable and functional after surgical transplantation and regenerated blood and lymphatic vessels. Immune cells from the host completely colonized the transplanted mLNs within 7-8 weeks after the surgical intervention. After allogeneic hematopoietic cell transplantation (allo-HCT), adoptively transferred allogeneic CD4+ T cells from FVB/N (H-2q) mice homed to the transplanted mLNs in C57BL/6 (H-2b) recipients during the initiation phase of acute graft-versus-host disease (aGvHD). These CD4+ T cells retained full proliferative capacity and upregulated effector and gut homing molecules comparable to those in mLNs from unmanipulated wild-type recipients. Wild type mLNs transplanted into MHCII deficient syngeneic hosts sufficed to activate alloreactive T cells upon allogeneic hematopoietic cell transplantation, even in the absence of MHCII+ CD11c+ myeloid cells. These data support that orthotopically transplanted mLNs maintain physiological functions after transplantation. The technique of LN transplantation can be applied to study migratory and resident cell compartment interactions in mLNs as well as immune reactions from and to the gut under inflammatory and non-inflammatory conditions.}, language = {en} } @phdthesis{Faist2017, author = {Faist, Hanna}, title = {Bedeutung und Charakterisierung der bakteriellen Flora in Vitis vinifera mit und ohne Wurzelhalsgallen}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-154359}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2017}, abstract = {Am Rebstock werden in der Natur von Agrobacterium vitis, dem Ausl{\"o}ser Wurzelhalsgallenerkrankung, charakteristische Wurzelhalsgallentumore induziert. Virulente Vertreter der Gattung der Agrobacteria schleusen bakterielle DNA in das pflanzliche Genom ein, wodurch die Pflanze Tumore produziert. Die Wurzelhalsgallenerkrankung wird seit einem Jahrhundert als ein Beispiel der Pflanzen-Pathogen-Interaktion untersucht. Die Rolle der bakteriellen Flora im Zusammenhang mit der Wurzelhalsgallenerkrankung beim Rebstock wurde bisher kaum betrachtet. Um dieser Frage nachzugehen, habe ich die endophytische mikrobielle Zusammensetzung von Rebst{\"o}cken mit und ohne Wurzelhalsgalle analysiert. Es werden Proben von drei Zeitpunkten einer Wachstumsperiode (Fr{\"u}hling, Sommer und Herbst) und von den Organen der Rebst{\"o}cke (Wurzeln, Pfropfstelle und einj{\"a}hrige Triebe) sowie dem Boden in einer Weinanlage bei Himmelstadt in Unterfranken genommen. Die Bakterienflora dieser Umweltproben wird mit kultivierungsabh{\"a}ngigen (Isolierung von Bakterien) und kultivierungsunabh{\"a}ngigen (Hochdurchsatzsequenzierungen) Methoden untersucht. Zudem werden i) die Virulenz der verschiedenen Agrobacterium-Isolate in Tumorassays bestimmt, ii) synthetische Bakteriengemeinschaften von in vitro kultivierten Weinpfl{\"a}nzchen mit Wurzelhalsgallen analysiert, iii) die Genome von einem virulenten und einem nicht-virulenten Agrobacteria-Isolat aus der Wurzelhalsgalle verglichen, iv) erste Interaktionsstudien auf festen N{\"a}hrmedien durchgef{\"u}hrt und v) virulente Agrobacteria mittels bildgebender Fluoreszenz-Lebenszeit-Mikroskopie (FLIM) in Wurzelhalsgallen lokalisiert. Die Rebst{\"o}cke dieser Studie haben eine organspezifische Bakterienflora, die innerhalb einer Wachstumsperiode variiert. Nur die Bakterienflora der Pfropfstelle (mit oder ohne Wurzelhalsgalle) aber nicht die des Bodens, der Wurzeln, und der einj{\"a}hrigen Triebe unterscheidet sich strukturell zwischen gesunden und erkrankten Rebst{\"o}cken. Mikroskopisch konnten virulente Agrobacteria punktuell in Interzellularen, sklerenchymatischen Geweben und assoziiert mit Leitgef{\"a}ßen nachgewiesen werden. Dadurch ist ausreichend Lebensraum vorhanden, der zus{\"a}tzlich von tumorspezifischen Bakterien besiedelt werden kann. Im Gegensatz zur gesunden Pfropfstelle ist in der Wurzelhalsgalle eine saisonal stabile Kernmikroflora, bestehend aus Vertreter von A. vitis, Pseudomonas, Enterobacteriaceae, Agrobacterium tumefaciens, Gammaproteobacteria und Burkholderiales, vorhanden. Diese Bakterien werden {\"u}berwiegend aus dem Boden rekrutiert und profitieren von der N{\"a}hrstoffsituation in der Wurzelhalsgalle. Wurzelhalsgallen enthalten Opine, die nur von der transformierten Pflanzenzelle produziert werden. Interessanterweise hat in dieser Arbeit ein Agrobacterium-Isolat Gene, die zum Opinkatabolismus beitragen und ein Pseudomonas-Isolat kann Opine als einzige Kohlenstoffquelle nutzen. Trotzdem sind beide Isolate weder virulent noch verdr{\"a}ngen sie die virulenten A. vitis, die ebenso Opine nutzen, aus der Wurzelhalsgalle. In synthetischen Bakteriengemeinschaften an in vitro kultivierten Weinpfl{\"a}nzchen konnte gezeigt werden, dass diese und weitere tumorspezifischen Bakterien, neben A. vitis, nicht essentiell zur Entstehung der Wurzelhalsgalle n{\"o}tig sind aber unterschiedliche Funktionen in der Wurzelhalsgalle {\"u}bernehmen. Ein Serratia-Isolat hemmt das Wachstum von A. vitis auf festen N{\"a}hrmedium, andere f{\"o}rdern oder hemmen das Wachstum der Wurzelhalsgalle. Nach Studien in der Literatur erh{\"o}hen weitere Bakterien die Resistenz des Rebstocks gegen{\"u}ber biotischem und abiotischem Stress. Zusammengefasst identifizierten und isolierte ich in dieser Studie unter 150 unterschiedlichen Bakterien in der Wurzelhalsgalle jene Bakterien, die neben A. vitis von der neuen {\"o}kologischen Nische profitieren und somit wahrscheinlich Opportunisten mit unterschiedlichen Funktionen sind. In Folge von multiplen Interaktionen in der Wurzelhalsgalle entsteht ein {\"o}kologisches Gleichgewicht zwischen den opportunistischen Bakterien, der Wurzelhalsgalle und dem Rebstock, das den Fortbestand des Rebstocks mit Wurzelhalsgalle erm{\"o}glicht.}, subject = {Wurzelhalsgalle}, language = {de} } @phdthesis{Kurz2022, author = {Kurz, Hendrikje}, title = {Regulation of ion conductance and cAMP/cGMP concentration in megakaryocytes by light}, doi = {10.25972/OPUS-21694}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-216947}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2022}, abstract = {Platelets play an essential role in haemostasis. Through granule secretion of second wave mediators and aggregation, they secure vascular integrity. Due to incorrect activation, platelet aggregation and subsequent thrombus formation can cause blood vessel occlusion, leading to ischemia. Patients with defects in platelet production have a low platelet count (thrombocytopenia), which can cause an increased bleeding risk. In vitro platelet generation is still in its development phase. So far, no convincing results have been obtained. For this reason, the health care system still depends on blood donors. Platelets are produced by bone marrow megakaryocytes (MKs), which extend long cytoplasmic protrusions, designated proplatelets, into sinusoidal blood vessels. Due to shear forces, platelets are then released into the bloodstream. The molecular mechanisms underlying platelet production are still not fully understood. However, a more detailed insight of this biological process is necessary to improve the in vitro generation of platelets and to optimise treatment regimens of patients. Optogenetics is defined as "light-modulation of cellular activity or of animal behaviour by gene transfer of photo-sensitive proteins". Optogenetics has had a big impact on neuroscience over the last decade. The use of channelrhodopsin 2 (ChR2), a light-sensitive cation channel, made it possible to stimulate neurons precisely and minimally invasive for the first time. Recent developments in the field of optogenetics intend to address a broader scope of cellular and molecular biology. The aim of this thesis is to establish optogenetics in the field of MK research in order to precisely control and manipulate MK differentiation. An existing "optogenetic toolbox" was used, which made it possible to light-modulate the cellular concentration of specific signalling molecules and ion conductance in MKs. Expression of the bacterial photoactivated adenylyl cyclase (bPAC) resulted in a significant increase in cAMP concentration after 5 minutes of illumination. Similarly, intracellular cGMP concentrations in MKs expressing photoactivated guanylyl cyclase (BeCyclop) were elevated. Furthermore, proplatelet formation of MKs expressing the light-sensitive ion channels ChR2 and anion channelrhodopsin (ACR) was altered in a light-dependent manner. These results show that MK physiology can be modified by optogenetic approaches. This might help shed new light on the underlying mechanisms of thrombopoiesis.}, subject = {Optogenetik}, language = {en} } @phdthesis{CalderonGiraldo2022, author = {Calder{\´o}n Giraldo, Jeniffer}, title = {Analysis of estrogen profiles including methoxyestrogen glucuronides: method validation and applicability to human plasma and breast tissue}, doi = {10.25972/OPUS-20939}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-209396}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2022}, abstract = {Estrogens, namely 17β-estradiol (E2) and estrone (E1) are considered to play an important role in the initiation and promotion of breast cancer (summarized in Raftogianis et al., 2000), a malignancy responsible for around 500,000 deaths per year (summarized in Ghislain et al., 2016). Two major mechanisms have been postulated to explain the carcinogenic effects of estrogens: (1) the estrogen receptor-mediated stimulation of breast cell proliferation with a concomitant enhanced rate of mutations and (2) the metabolism of hydroxylated estrogens to quinone derivatives which can react with the DNA (Russo and Russo, 2006, summarized in Yager and Davidson, 2006). Nevertheless, as a detoxifying mechanism, E1, E2, and their hydroxylated and methoxylated metabolites are reversibly conjugated into sulfates and glucuronides devoid of biological activity (summarized in Guillemette et al., 2004). Yet, despite the key detoxifying function of these conjugates, the study of their circulating levels face some significant problems: (1) analysis by techniques such as radioimmunoassay lack specificity and accuracy and requires enzymatic/chemical hydrolysis before analysis, being unable to differentiate between sulfates and glucuronides (summarized in Stanczyk et al., 2007, summarized in Wang et al., 2016), (2) very little knowledge in healthy women, which has been identified as a barrier to advance in breast cancer research (summarized in Liu, 2000), and (3) far fewer studies in pre- than in postmenopausal women (summarized in Samavat and Kurzer, 2015). Therefore, to get more insights into the research of breast cancer etiology and prevention, the analysis of circulating levels of estrogens (including metabolites and conjugates) in women without breast cancer through reliable analytical techniques, is required.}, language = {en} } @phdthesis{Moeller2022, author = {M{\"o}ller, Jan}, title = {Mechanisms and consequences of µ-opioid receptor dimerization}, doi = {10.25972/OPUS-21986}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-219862}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2022}, abstract = {One third of all market approved drugs target G protein coupled receptors (GPCRs), covering a highly diverse spectrum of indications reaching from acute anti-allergic treatment over bloodpressure regulation, Parkinson's disease, schizophrenia up to the treatment of severe pain. GPCRs are key signaling proteins that mostly function as monomers, but for several receptors constitutive dimer formation has been described and in some cases is essential for function. I have investigated this problem using the μ-opioid receptor (µOR) as a model system - based both on its pharmacological importance and on specific biochemical data suggesting that it may present a particularly intriguing case of mono- vs- dimerization. The µOR is the prime target for the treatment of severe pain. In its inactive conformation it crystallizes as homodimer when bound to the antagonist β- funaltrexamine (β-FNA), whereas the active, agonist-bound receptor crystallizes as a monomer. Using single-molecule microscopy combined with superresolution techniques on intact cells, I describe here a dynamic monomer-dimer equilibrium of µORs where dimer formation is driven by specific agonists. The agonist DAMGO, but not morphine, induces dimer formation in a process that correlates temporally and, in its agonist, and phosphorylation dependence with β-arrestin2 binding to the receptors. This dimerization is independent from but may precede µOR internalization. Furthermore, the results show that the μOR tends to stay, on the cell surface, within compartments defined by actin fibers and its mobility is modulated by receptor activation. These data suggest a new level of GPCR regulation that links receptor compartmentalization and dimer formation to specific agonists and their downstream signals.}, subject = {Opiatrezeptor}, language = {en} } @phdthesis{JimenezMartin2022, author = {Jim{\´e}nez Mart{\´i}n, Ovidio Manuel}, title = {Analysis of MYCN and MAX alterations in Wilms Tumor}, doi = {10.25972/OPUS-24291}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-242919}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2022}, abstract = {Wilms tumor (WT) is the most common renal tumor in childhood. Among others, MYCN copy number gain and MYCN P44L and MAX R60Q mutations have been identified in WT. The proto-oncogene MYCN encodes a transcription factor that requires dimerization with MAX to activate transcription of numerous target genes. MYCN gain has been associated with adverse prognosis. The MYCN P44L and MAX R60Q mutations, located in either the transactivating or basic helix-loop-helix domain, respectively, are predicted to be damaging by different pathogenicity prediction tools. These mutations have been reported in several other cancers and remain to be functionally characterized. In order to further describe these events in WT, we screened both mutations in a large cohort of unselected WT patients, to check for an association of the mutation status with certain histological or clinical features. MYCN P44L and MAX R60Q revealed frequencies of 3 \% and 0.9 \% and also were significantly associated to higher risk of relapse and metastasis, respectively. Furthermore, to get a better understanding of the MAX mutational landscape in WT, over 100 WT cases were analyzed by Sanger sequencing to identify other eventual MAX alterations in its coding sequence. R60Q remained the only MAX CDS alteration described in WT to date. To analyze the potential functional consequences of these mutations, we used a doxycycline-inducible system to overexpress each mutant in HEK293 cells. This biochemical characterization identified a reduced transcriptional activation potential for MAX R60Q, while the MYCN P44L mutation did not change activation potential or protein stability. The protein interactome of N-MYC-P44L was likewise not altered as shown by mass spectrometric analyses of purified N-MYC complexes. However, we could identify a number of novel N-MYC partner proteins, several of these known for their oncogenic potential. Their correlated expression in WT samples suggested a role in WT oncogenesis and they expand the range of potential biomarkers for WT stratification and targeting, especially for high-risk WT.}, subject = {Nephroblastom}, language = {en} } @phdthesis{Andreska2021, author = {Andreska, Thomas}, title = {Effects of dopamine on BDNF / TrkB mediated signaling and plasticity on cortico-striatal synapses}, doi = {10.25972/OPUS-17431}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-174317}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {Progressive loss of voluntary movement control is the central symptom of Parkinson's disease (PD). Even today, we are not yet able to cure PD. This is mainly due to a lack of understanding the mechanisms of movement control, network activity and plasticity in motor circuits, in particular between the cerebral cortex and the striatum. Brain-derived neurotrophic factor (BDNF) has emerged as one of the most important factors for the development and survival of neurons, as well as for synaptic plasticity. It is thus an important target for the development of new therapeutic strategies against neurodegenerative diseases. Together with its receptor, the Tropomyosin receptor kinase B (TrkB), it is critically involved in development and function of the striatum. Nevertheless, little is known about the localization of BDNF within presynaptic terminals in the striatum, as well as the types of neurons that produce BDNF in the cerebral cortex. Furthermore, the influence of midbrain derived dopamine on the control of BDNF / TrkB interaction in striatal medium spiny neurons (MSNs) remains elusive so far. Dopamine, however, appears to play an important role, as its absence leads to drastic changes in striatal synaptic plasticity. This suggests that dopamine could regulate synaptic activity in the striatum via modulation of BDNF / TrkB function. To answer these questions, we have developed a sensitive and reliable protocol for the immunohistochemical detection of endogenous BDNF. We find that the majority of striatal BDNF is provided by glutamatergic, cortex derived afferents and not dopaminergic inputs from the midbrain. In fact, we found BDNF in cell bodies of neurons in layers II-III and V of the primary and secondary motor cortex as well as layer V of the somatosensory cortex. These are the brain areas that send dense projections to the dorsolateral striatum for control of voluntary movement. Furthermore, we could show that these projection neurons significantly downregulate the expression of BDNF during the juvenile development of mice between 3 and 12 weeks. In parallel, we found a modulatory effect of dopamine on the translocation of TrkB to the cell surface in postsynaptic striatal Medium Spiny Neurons (MSNs). In MSNs of the direct pathway (dMSNs), which express dopamine receptor 1 (DRD1), we observed the formation of TrkB aggregates in the 6-hydroxydopamine (6-OHDA) model of PD. This suggests that DRD1 activity controls TrkB surface expression in these neurons. In contrast, we found that DRD2 activation has opposite effects in MSNs of the indirect pathway (iMSNs). Activation of DRD2 promotes a rapid decrease in TrkB surface expression which was reversible and depended on cAMP. In parallel, stimulation of DRD2 led to induction of phospho-TrkB (pTrkB). This effect was significantly slower than the effect on TrkB surface expression and indicates that TrkB is transactivated by DRD2. Together, our data provide evidence that dopamine triggers dual modes of plasticity on striatal MSNs by acting on TrkB surface expression in DRD1 and DRD2 expressing MSNs. This surface expression of the receptor is crucial for the binding of BDNF, which is released from corticostriatal afferents. This leads to the induction of TrkB-mediated downstream signal transduction cascades and long-term potentiation (LTP). Therefore, the dopamine-mediated translocation of TrkB could be a mediator that modulates the balance between dopaminergic and glutamatergic signaling to allow synaptic plasticity in a spatiotemporal manner. This information and the fact that TrkB is segregated to persistent aggregates in PD could help to improve our understanding of voluntary movement control and to develop new therapeutic strategies beyond those focusing on dopaminergic supply.}, subject = {Brain-derived neurotrophic factor}, language = {en} } @phdthesis{Song2021, author = {Song, Boyuan}, title = {Structural and functional studies of \(Saccharomyces\) \(cerevisiae\) Ccr4-Not complex with Electron microscopy}, doi = {10.25972/OPUS-21652}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-216527}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {The degradation of poly-adenosine tails of messenger RNAs (mRNAs) in the eukaryotic cells is a determining step in controlling the level of gene expression. The highly conserved Ccr4-Not complex was identified as the major deadenylation complex in all eukaryotic organisms. Plenty of biochemical studies have shown that this complex is also involved in many aspects of the mRNA metabolism, but we are still lacking the detailed structural information about its overall architecture and conformational states that could help to elucidate its multifunction and the way it is coordinated in the cells. Such information can also provide a basis to finding a possible way of intervention since the complex is also involved in some diseases such as cancer and cardiovascular disorders in humans. Meanwhile, the single particle Cryo-EM method has been through a "resolution revolution" recently due to the use of the newly developed direct electron detectors and has since resolved the high-resolution structures of many macromolecular protein complexes in their near-native state. Therefore, it was employed as a suitable method for studying the Ccr4-Not complex here. In this work, the Falcon 3EC direct detector mounted on the 300kV Titan Krios G3i Cryo-EM was evaluated for its practical performance at obtaining high-quality Cryo-EM data from protein samples of different molecular sizes. This served as a proof of principle for this detector's capabilities and as a data collection guidance for studying the macromolecular complexes, such as the Ccr4-Not, when using an advanced high-performance microscope system. Next, the endogenous yeast Ccr4-Not complex was also purified via the immunoaffinity purification method and evaluated using negative staining EM to assess the conditions of the complex before proceeding to sample preparation for Cryo-EM. This has shown that the complex had an unexpected inherently dynamic property in vitro and extra optimisation procedures were needed to stabilise the complex during the purification and sample preparation. In addition, by using the label-free quantitative Mass spectrometry to examine the coimmunoprecipitated complex via different tagged subunits, it was deduced that two of the subunits (Not3/Not5) that shared some sequence similarity might compete for association with the scaffold subunit of the complex. An uncharacterised protein was also identified coimmunoprecipitating with the Caf130 subunit of the yeast complex. Cryo-EM data from the purified complex provided a low-resolution map that represents a surprisingly smaller partial complex as compared to 3D structures from previous studies, although gel electrophoresis and Mass spectrometry data have identified all of the nine subunits of the Ccr4-Not core complex in the sample. It was concluded that due to the presence of many predicted unstructured regions VI in the subunits and their dynamic composition in solution, the native complex could have been spontaneously denatured at the air/water interface during the sample preparation thus limiting the resolution of the Cryo-EM reconstruction. The purified complex was also examined for its deadenylase and ubiquitin ligase activity by in vitro assays. It was shown that the native complex has a different rate of activity and possibly also a different mode of action compared to the recombinant complexes from other species under similar reaction conditions. The Not4 E3 ligase was also shown to be active in the complex and was likely auto-ubiquitinated in the absence of a substrate. Both types of assays have also shown that the conformational flexibility does not seem to affect the enzymatic reactions when using a chemically crosslinked form of the complex for the assay, which implies that there can be other underlying mechanisms coordinating its structural and functional relationship. The findings from this work have therefore moved our understanding of the Ccr4-Not complex forward by looking at the different structural and functional behaviours of the endogenous complex, especially highlighting the obstacles in sample preparation for the native complex in high-resolution Cryo-EM. This would serve as foundation for future studies on the mechanism of this complex's catalytic functions and also for optimising the Cryo-EM sample to generate better data that could eventually resolve the structure to a high-resolution.}, subject = {CCR4}, language = {en} } @phdthesis{Anton2021, author = {Anton, Selma}, title = {Characterization of cAMP nanodomains surrounding the human Glucagon-like peptide 1 receptor using FRET-based reporters}, doi = {10.25972/OPUS-19069}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-190695}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {Cyclic adenosine monophosphate (cAMP), the ubiquitous second messenger produced upon stimulation of GPCRs which couple to the stimulatory GS protein, orchestrates an array of physiological processes including cardiac function, neuronal plasticity, immune responses, cellular proliferation and apoptosis. By interacting with various effector proteins, among others protein kinase A (PKA) and exchange proteins directly activated by cAMP (Epac), it triggers signaling cascades for the cellular response. Although the functional outcomes of GSPCR-activation are very diverse depending on the extracellular stimulus, they are all mediated exclusively by this single second messenger. Thus, the question arises how specificity in such responses may be attained. A hypothesis to explain signaling specificity is that cellular signaling architecture, and thus precise operation of cAMP in space and time would appear to be essential to achieve signaling specificity. Compartments with elevated cAMP levels would allow specific signal relay from receptors to effectors within a micro- or nanometer range, setting the molecular basis for signaling specificity. Although the paradigm of signaling compartmentation gains continuous recognition and is thoroughly being investigated, the molecular composition of such compartments and how they are maintained remains to be elucidated. In addition, such compartments would require very restricted diffusion of cAMP, but all direct measurements have indicated that it can diffuse in cells almost freely. In this work, we present the identification and characterize of a cAMP signaling compartment at a GSPCR. We created a F{\"o}rster resonance energy transfer (FRET)-based receptor-sensor conjugate, allowing us to study cAMP dynamics in direct vicinity of the human glucagone-like peptide 1 receptor (hGLP1R). Additional targeting of analogous sensors to the plasma membrane and the cytosol enables assessment of cAMP dynamics in different subcellular regions. We compare both basal and stimulated cAMP levels and study cAMP crosstalk of different receptors. With the design of novel receptor nanorulers up to 60nm in length, which allow mapping cAMP levels in nanometer distance from the hGLP1R, we identify a cAMP nanodomain surrounding it. Further, we show that phosphodiesterases (PDEs), the only enzymes known to degrade cAMP, are decisive in constraining cAMP diffusion into the cytosol thereby maintaining a cAMP gradient. Following the discovery of this nanodomain, we sought to investigate whether downstream effectors such as PKA are present and active within the domain, additionally studying the role of A-kinase anchoring proteins (AKAPs) in targeting PKA to the receptor compartment. We demonstrate that GLP1-produced cAMP signals translate into local nanodomain-restricted PKA phosphorylation and determine that AKAP-tethering is essential for nanodomain PKA. Taken together, our results provide evidence for the existence of a dynamic, receptor associated cAMP nanodomain and give prospect for which key proteins are likely to be involved in its formation. These conditions would allow cAMP to exert its function in a spatially and temporally restricted manner, setting the basis for a cell to achieve signaling specificity. Understanding the molecular mechanism of cAMP signaling would allow modulation and thus regulation of GPCR signaling, taking advantage of it for pharmacological treatment.}, language = {en} } @phdthesis{Demler2021, author = {Demler, Theresa}, title = {Funktionelle Analyse von patientenspezifischen Mutationen in IKZF1/3 als m{\"o}gliche Resistenzmechanismen in der Therapie des refrakt{\"a}ren und rezidivierten multiplen Myeloms}, doi = {10.25972/OPUS-24873}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-248730}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2021}, abstract = {Trotz einer Vielzahl neuer Therapieans{\"a}tze in den letzten Jahren, die ein l{\"a}ngeres {\"U}berleben der Patienten erm{\"o}glichen, stellt das multiple Myelom weiterhin eine unheilbare Krankheit dar. Der Großteil der Patienten entwickelt letztlich ein rezidiviertes oder refrakt{\"a}res multiples Myelom (RRMM). Bei Erstdiagnose und bei RRMM sind immunmodulierende Medikamente (IMiDs), wie Lenalidomid, eine bedeutende Therapieoption. Durch die Bindung von Lenalidomid an den CRL4CRBN Ligase Komplex entwickelt dieser eine modifizierte Substratspezifit{\"a}t: die Transkriptionsfaktoren IKZF1 (Ikaros) und IKZF3 (Aiolos) werden ubiquitinyliert und proteasomal abgebaut. Von Kr{\"o}nke et al. (2014) wurde eine 30 Aminos{\"a}uren lange Sequenz (Degron) am N-Terminus von IKZF1/3 definiert, die essenziell f{\"u}r die Lenalidomid-Sensitivit{\"a}t ist. Durch Next Generation Sequencing (NGS)-Technologien wurde ein signifikanter Anstieg der Mutationsfrequenz unter Therapie verzeichnet und vier Missense-Mutationen in IKZF1 und eine in IKZF3 bei Patienten mit RRMM identifiziert. Die Mutationen IKZF1-A152T und IKZF3-G159R sind innerhalb der Degron-Sequenz lokalisiert, IKZF1-E170D liegt unmittelbar daneben und IKZF1-Y413C bzw. IKZF1-R439H befinden sich am C-Terminus des Proteins. F{\"u}r diese mutierten IKZF-Proteine wurden im Rahmen dieser Arbeit Expressionsvektoren kloniert und stabil in humane Myelomzelllinien transfiziert. Durch Western Analysen und funktionelle Assays der Zellviabilit{\"a}t (alamarBlue) bzw. des Zelltods (Annexin V-PI) wurden diese polyklonalen Sublinien bez{\"u}glich ihrer Implikationen f{\"u}r die Lenalidomid-Sensibilit{\"a}t untersucht. Nur die IKZF1-Mutationen A152T und E170D f{\"u}hrten zu einer verminderten, bei A152T geradezu aufgehobenen, Degradierung von Ikaros nach Lenalidomid-Behandlung. In den funktionellen Analysen f{\"u}hrte A152T ebenfalls zu stark verminderter Lenalidomid-Aktivit{\"a}t und zu deutlich h{\"o}herem {\"U}berleben. Obwohl Sleeping Beauty Vektoren mit unterschiedlichen Expressionskassetten f{\"u}r Aiolos eingesetzt wurden, war keine eindeutige {\"U}berexpression von IKZF3 feststellbar, daher sind diese Ergebnisse nur eingeschr{\"a}nkt zu verwerten. Zusammenfassend l{\"a}sst sich sagen, dass in vivo bei Patienten aufgetretene und in vitro analysierte Mutationen, gezeigt an der in der Degron-Sequenz lokalisierten Mutation IKZF1-A152T, im Zellmodell eine Resistenz vermitteln und damit Einfluss auf m{\"o}gliche Therapieresistenzen haben k{\"o}nnen.}, subject = {Plasmozytom}, language = {de} } @phdthesis{Grushevskyi2022, author = {Grushevskyi, Yevgenii}, title = {Activation kinetics of G-protein-coupled receptors}, doi = {10.25972/OPUS-20721}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-207215}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2022}, abstract = {G-protein-coupled receptors (GPCRs) are key biological switches that transmit both internal and external stimuli into the cell interior. Among the GPCRs, the "light receptor" rhodopsin has been shown to activate with a re-arrangement of the transmembrane helix bundle within ≈1 ms, while all other receptors are thought to become activated in subsecond range at saturating concentrations. Here we investigate activation kinetics of a dimeric GPCR, the metabotropic glutamate receptor-1 (mGluR1), and several class A GPCRs, as muscarinic receptor 3 (M3R), adrenergic (α2aAR and β1R) and opioid (µOR) receptors. We first used UV-light-triggered uncaging of glutamate in intact cells. Sub-millisecond F{\"o}rster resonance energy transfer recordings between labels at intracellular receptor sites were used to record conformational changes in the mGluR1. At millimolar ligand concentrations the initial rearrangement between the mGluR1 subunits occurs at a speed of τ1≈1-2 ms. These rapid changes were followed by significantly slower conformational changes in the transmembrane domain (τ2≈20 ms). We further characterized novel photoswitchable negative allosteric modulators for mGluR1, which bind to its transmembrane core and block the conformational change as well as the downstream signaling. Effects of the compounds were quantified in pharmacological cell assays in the dark and using UV and green light illumination. We finally develop a framework for image-based kinetic analysis of GPCRs which allowed us to measure activation kinetics of several prototypical class A GPCRs and to discover membrane heterogeneities of GPCR activation. It appears that GPCR activation signal is not only dependent on the amount of activated receptors, but also has some level of correlation with the local density of activated receptors.}, subject = {G-Protein gekoppelter Rezeptor}, language = {en} } @phdthesis{Liu2022, author = {Liu, Ruiqi}, title = {Dynamic regulation of the melanocortin 4 receptor system in body weight homeostasis and reproductive maturation in fish}, doi = {10.25972/OPUS-20653}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-206536}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2022}, abstract = {Puberty is an important period of life with physiological changes to enable animals to reproduce. Xiphophorus fish exhibit polymorphism in body size, puberty timing, and reproductive tactics. These phenotypical polymorphisms are controlled by the Puberty (P) locus. In X. nigrensis and X. multilineatus, the P locus encodes the melanocortin 4 receptor (Mc4r) with high genetic polymorphisms. Mc4r is a member of the melanocortin receptors, belonging to class A G-protein coupled receptors. The Mc4r signaling system consists of Mc4r, the agonist Pomc (precursor of various MSH and of ACTH), the antagonist Agrp and accessory protein Mrap2. In humans, MC4R has a role in energy homeostasis. MC4R and MRAP2 mutations are linked to human obesity but not to puberty. Mc4rs in X. nigrensis and X. multilineatus are present in three allele classes, A, B1 and B2, of which the X-linked A alleles express functional receptors and the male-specific Y-linked B alleles encode defective receptors. Male body sizes are correlated with B allele type and B allele copy numbers. Late-maturing large males carry B alleles in high copy number while early-maturing small males carry B alleles in low copy number or only A alleles. Cell culture co-expression experiments indicated that B alleles may act as dominant negative receptor mutants on A alleles. In this study, the main aim was to biochemically characterize the mechanism of puberty regulation by Mc4r in X. nigrensis and X. multilineatus, whether it is by Mc4r dimerization and/or Mrap2 interaction with Mc4r or other mechanisms. Furthermore, Mc4r in X. hellerii (another swordtail species) and medaka (a model organism phylogenetically close to Xiphophorus) were investigated to understand if the investigated mechanisms are conserved in other species. In medaka, the Mc4r signaling system genes (mc4r, mrap2, pomc, agrp1) are expressed before hatching, with agrp1 being highly upregulated during hatching and first feeding. These genes are mainly expressed in adult brain, and the transcripts of mrap2 co-localize with mc4r indicating a function in modulating Mc4r signaling. Functional comparison between wild-type and mc4r knockout medaka showed that Mc4r knockout does not affect puberty timing but significantly delays hatching due to the retarded embryonic development of knockout medaka. Hence, the Mc4r system in medaka is involved in regulation of growth rather than puberty. In Xiphophorus, expression co-localization of mc4r and mrap2 in X. nigrensis and X. hellerii fish adult brains was characterized by in situ hybridization. In both species, large males exhibit strikingly high expression of mc4r while mrap2 shows similar expression level in the large and small male and female. Differently, X. hellerii has only A-type alleles indicating that the puberty regulation mechanisms evolved independently in Xiphophorus genus. Functional analysis of Mrap2 and Mc4r A/B1/B2 alleles of X. multilineatus showed that increased Mrap2 amounts induce higher cAMP response but EC50 values do not change much upon Mrap2 co-expression with Mc4r (expressing only A allele or A and B1 alleles). A and B1 alleles were expressed higher in large male brains, while B2 alleles were only barely expressed. Mc4r A-B1 cells have lower cAMP production than Mc4r A cells. Together, this indicates a role of Mc4r alleles, but not Mrap2, in puberty onset regulation signaling. Interaction studies by FRET approach evidenced that Mc4r A and B alleles can form heterodimers and homodimers in vitro, but only for a certain fraction of the expressed receptors. Single-molecule colocalization study using super-resolution microscope dSTORM confirmed that only few Mc4r A and B1 receptors co-localized on the membrane. Altogether, the species-specific puberty onset regulation in X. nigrensis and X. multilineatus is linked to the presence of Mc4r B alleles and to some extent to its interaction with A allele gene products. This is reasoned to result in certain levels of cAMP signaling which reaches the dynamic or static threshold to permit late puberty in large males. In summary, puberty onset regulation by dominant negative effect of Mc4r mutant alleles is a special mechanism that is found so far only in X. nigrensis and X. multilineatus. Other Xiphophorus species obviously evolved the same function of the pathway by diverse mechanisms. Mc4r in other fish (medaka) has a role in regulation of growth, reminiscent of its role in energy homeostasis in humans. The results of this study will contribute to better understand the biochemical and physiological functions of the Mc4r system in vertebrates including human.}, subject = {Japank{\"a}rpfling}, language = {en} } @phdthesis{Grob2022, author = {Grob, Robin}, title = {The Function of Learning Walks of \({Cataglyphis Ants}\): Behavioral and Neuronal Analyses}, doi = {10.25972/OPUS-29017}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-290173}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2022}, abstract = {Humans and animals alike use the sun, the moon, and the stars to guide their ways. However, the position of celestial cues changes depending on daytime, season, and place on earth. To use these celestial cues for reliable navigation, the rotation of the sky has to be compensated. While humans invented complicated mechanisms like the Antikythera mechanism to keep track of celestial movements, animals can only rely on their brains. The desert ant Cataglyphis is a prime example of an animal using celestial cues for navigation. Using the sun and the related skylight polarization pattern as a compass, and a step integrator for distance measurements, it can determine a vector always pointing homewards. This mechanism is called path integration. Since the sun's position and, therefore, also the polarization pattern changes throughout the day, Cataglyphis have to correct this movement. If they did not compensate for time, the ants' compass would direct them in different directions in the morning and the evening. Thus, the ants have to learn the solar ephemeris before their far-reaching foraging trips. To do so, Cataglyphis ants perform a well-structured learning-walk behavior during the transition phase from indoor worker to outdoor forager. While walking in small loops around the nest entrance, the ants repeatedly stop their forward movements to perform turns. These can be small walked circles (voltes) or tight turns about the ants' body axes (pirouettes). During pirouettes, the ants gaze back to their nest entrance during stopping phases. These look backs provide a behavioral read-out for the state of the path integrator. The ants "tell" the observer where they think their nest is, by looking back to it. Pirouettes are only performed by Cataglyphis ants inhabiting an environment with a prominent visual panorama. This indicates, that pirouettes are performed to learn the visual panorama. Voltes, on the other hand, might be used for calibrating the celestial compass of the ants. In my doctoral thesis, I employed a wide range of state-of-the-art techniques from different disciplines in biology to gain a deeper understanding of how navigational information is acquired, memorized, used, and calibrated during the transition phase from interior worker to outdoor forager. I could show, that celestial orientation cues that provide the main compass during foraging, do not guide the ants during the look-backbehavior of initial learning walks. Instead Cataglyphis nodus relies on the earth's magnetic field as a compass during this early learning phase. While not guiding the ants during their first walks outside of the nest, excluding the ants from perceiving the natural polarization pattern of the skylight has significant consequences on learning-related plasticity in the ants' brain. Only if the ants are able to perform their learning-walk behavior under a skylight polarization pattern that changes throughout the day, plastic neuronal changes in high-order integration centers are induced. Especially the mushroom bogy collar, a center for learning and memory, and the central complex, a center for orientation and motor control, showed an increase in volume after learning walks. This underlines the importance of learning walks for calibrating the celestial compass. The magnetic compass might provide the necessary stable reference system for the ants to calibrate their celestial compass and learn the position of landmark information. In the ant brain, visual information from the polarization-sensitive ocelli converge in tight apposition with neuronal afferents of the mechanosensitive Johnston's organ in the ant's antennae. This makes the ants' antennae an interesting candidate for studying the sensory bases of compass calibration in Cataglyphis ants. The brain of the desert navigators is well adapted to successfully accomplish their navigational needs. Females (gynes and workers) have voluminous mushroom bodies, and the synaptic complexity to store large amount of view-based navigational information, which they acquire during initial learning walks. The male Cataglyphis brain is better suited for innate behaviors that support finding a mate. The results of my thesis show that the well adapted brain of C. nodus ants undergoes massive structural changes during leaning walks, dependent on a changing celestial polarization pattern. This underlies the essential role of learning walks in the calibration of orientation systems in desert ants.}, subject = {Cataglyphis}, language = {en} } @phdthesis{Sbiera2022, author = {Sbiera, Iuliu}, title = {Possible role of epithelial to mesenchymal transition and its associated FGF/FGFR pathway in adrenocortical carcinoma}, doi = {10.25972/OPUS-27745}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-277454}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2022}, abstract = {Recent studies have hinted to an involvement of epithelial to mesenchymal transition, a mechanism often associated with metastasis in epithelial cancers, in adrenocortical carcinoma. In addition, the knowledge about the FGF/FGFR pathway in pathogenesis of the adrenal gland, a pathway often associated with the epithelial to mesenchymal transition, is sparse and fragmented. We assessed, in a large number of normal, benign and malignant adrenocortical tissues (a total of 181 different samples), the expression of canonical and novel epithelial and mesenchymal markers and compared it with their expression in typical epithelial and mesenchymal tissues. In addition, we also quantified the expression of most members of the FGF/FGFR pathway in adrenocortical tissues and compared it against well-studied epithelial and mesenchymal tissues as well as between malignant and not malignant adrenocortical tissues, in order to assess the possible connection to epithelial to mesenchymal transition and find possible drug targets. Surprisingly, both normal and neoplastic adrenocortical tissues lacked expression of epithelial markers (e.g. E-Cadhering or EpCAM) but strongly expressed mesenchymal markers (e.g. N-Cadherin or SLUG), suggesting a higher similarity of adrenocortical tissues to mesenchymal compared to epithelial tissues, reminiscent of the adrenocortical origin from the intermediate mesoderm. Despite their ubiquitous expression in all adrenocortical tissues, mesenchymal markers had a variable expression in adrenocortical carcinoma, associating either directly or inversely with different clinical markers of tumor aggressiveness. Lymph node infiltration was associated with high expression of SLUG (p = 0.04), and at the same time low expression of N-cadherin (p = 0.001), and the same pattern was observed for venous infiltration of tumoral tissue, Weiss score of tumor malignancy or Ki67 proliferation marker. In malignant compared to benign adrenal tumors, we found significant differences in the expression of 16 out of the 94 studied FGF receptor pathway related genes. Genes involved in tissue differentiation and metastatic spread through epithelial to mesenchymal transition were most strongly altered. The therapeutically targetable FGF receptors 1 and 4 were upregulated 4.6- and 6-fold, respectively, in malignant compared to benign adrenocortical tumors, which was confirmed by using two different quantification methods in both frozen and paraffin embedded tissue material. High expression of FGFR1 and 4 was significantly associated with worse patient prognosis (High FGFR1 expression was associated with a shorter overall patient survival of 84 vs 148 months (HR=1.8, 95\% CI: 1.01-3.25) as well as a shorter resection free survival of 25 vs 75 months ((HR=2.93, 95\% CI: 1.25-6.84), while high FGFR4 was associated with a much shorter overall survival of 50 vs 155 months (HR=2.44, 95\% CI: 1.41-4.22). In conclusion, epithelial to mesenchymal transition does not seem to play a role in adrenocortical carcinoma tumor progression, and the FGF/FGFR pathway, even if it is probably not related to EMT, is nonetheless associated with tumor aggressiveness. Furthermore, quantification of FGF receptors may enable a stratification of adrenocortical carcinoma for the use of FGFR inhibitors in future clinical trials.}, subject = {Nebennierenrindenkrebs}, language = {en} } @phdthesis{Diebold2023, author = {Diebold, Mathias}, title = {Virtuelles Screening und Entwicklung selektiver Liganden des Aurora-A - MYCN Komplexes und computergest{\"u}tzte Methoden zur Analyse und Design von PROTACs}, doi = {10.25972/OPUS-31759}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-317594}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2023}, abstract = {Die Interaktion des onkogenen Transkriptionsfaktors MYCN mit der Ser/Thr Kinase Aurora-A verhindert dessen Abbau {\"u}ber das Ubiquitin Proteasomsystem indem die Rekrutierung des SCF FbxW7 Komplexes verhindert wird. Die Kinase nimmt mit der Bindung an MYCN eine aktive Konformation ein und erh{\"a}lt somit die F{\"a}higkeit zur Kinaseaktivit{\"a}t ohne die sonst notwendige Phosphorylierung von Thr288 oder die Anwesenheit eines Aktivators wie TPX2. Da hohe MYCN Konzentrationen Tumore wie Neuroblastome antreiben, ist die St{\"o}rung der Komplexbildung mit Aurora-A eine valide Strategie zur Entwicklung von Chemotherapeutika. Einige Inhibitoren von Aurora-A wie Alisertib (MLN8237) sind in der Lage, eine Konformations{\"a}nderung in der Kinase zu verursachen, die mit der Bindung von MYCN inkompatibel ist und auf diese Weise den Abbau des Transkriptionsfaktors induziert. Da Aurora-A wichtige Funktionen in der Mitose {\"u}bernimmt, k{\"o}nnte eine direkte Adressierung des Komplexes anstelle einer systemischen Inhibition der Kinase vielversprechender sein. Ziel des Projektes war die Identifizierung von Molek{\"u}len, die selektiv an das Interface des Aurora-A - MYCN Komplexes binden und weiter optimiert werden k{\"o}nnen, um einen gezielten Abbau des Transkriptionsfaktors {\"u}ber einen PROTAC Ansatz zu erm{\"o}glichen. Virtuelle Screenings und molekulardynamische Simulationen wurden durchgef{\"u}hrt, um kommerziell erh{\"a}ltliche Verbindungen zu identifizieren, welche mit einer Bindetasche des Komplexes interagieren, die nur zustande kommt, wenn beide Proteine miteinander interagieren. Aus einem ersten Set von zehn potentiellen Liganden wurde f{\"u}r vier eine selektive Interaktion mit dem Protein - Protein Komplex gegen{\"u}ber Aurora-A oder MYCN alleine in STD-NMR Experimenten best{\"a}tigt. Zwei der Hits besaßen ein identisches Grundger{\"u}st und wurden als Ausganspunkt f{\"u}r die Optimierung zu potenteren Liganden genutzt. Das Ger{\"u}st wurde fragmentweise vergr{\"o}ßert und in Richtung besserer in-silico Ergebnisse und Funktionalisierung zur Anbringung von E3-Ligase-Liganden optimiert. Neun dieser Liganden der zweiten Generation wurden synthetisiert. Um quantitative Bindungsdaten zu erhalten, wurde ein kovalent verkn{\"u}pftes Aurora-A - MYCN Konstrukt entworfen. Die strukturelle und funktionale Integrit{\"a}t wurde in STD-NMR und BLI Experimenten mit bekannten Aurora-A Inhibitoren best{\"a}tigt, sowie in NMR-basierten ATPase Assays. Zus{\"a}tzlich konnte die Kristallstruktur des Konstrukts gel{\"o}st und damit die Validit{\"a}t des Designs best{\"a}tigt werden. Quantitative Messungen der synthetisierten Molek{\"u}le identifizierten HD19S als Hit mit einer zehnfach h{\"o}heren Affinit{\"a}t f{\"u}r das Aurora-A - MYCN Konstrukt im Vergleich zu der Kinase allein. Zus{\"a}tzlich wurden in-silico Untersuchungen zu PROTACs der Aurora-A Kinase durchgef{\"u}hrt. Interaktionen zwischen Aurora-A, der E3-Ligase Cereblon und den Liganden wurden modelliert und f{\"u}r die Erkl{\"a}rung unterschiedlicher Aktivit{\"a}ten der eingesetzten PROTACs verwendet. Zudem zeigte das aktivste PROTAC eine hohe Selektivit{\"a}t f{\"u}r Aurora-A gegen{\"u}ber Aurora-B, obwohl die verwendete Erkennungseinheit (Alisertib) an beide Aurora-Proteine bindet. Dieser Umstand konnte durch energetische Analysen von molekulardynamischen Simulationen der tern{\"a}ren Komplexe erkl{\"a}rt werden. Optimierungsm{\"o}glichkeiten f{\"u}r eine effizientere Degradation von Aurora-A durch die PROTACs wurden basierend auf modifizierten Erkennungseinheiten und verbesserten Linkern untersucht.}, subject = {Arzneimitteldesign}, language = {de} } @phdthesis{KayisogluKaya2022, author = {Kayisoglu-Kaya, {\"O}zge}, title = {Analysis of gastrointestinal epithelial innate immune barrier using human and murine organoids as a model}, doi = {10.25972/OPUS-27749}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-277497}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2022}, abstract = {The epithelial layer of the gastrointestinal (GI) tract provides a barrier between the environment and the body. Dysfunction of the epithelium, including changes of the innate immune response facilitated by pattern recognition receptors (PRRs), plays a major role in the development of GI disorders. However, the organization of innate immune sensing, the expression and activity of PRRs and the factors contri¬buting to such possible organization along the GI tract are unclear. In recent years, stem cell-derived organoids gained increasing attention as promising tissue models. Here, a biobank of human and murine organoids comprising three lines from each GI segment; corpus, pylorus, duodenum, jejunum, ileum, colon was generated. RNA sequencing of 42 lines confirmed the preservation of tissue identity and revealed an extensive organization of innate immune signaling components along the cephalocaudal axis, giving each segment a specific innate immune profile. Comple-menting the region-specific expression analysis, several PRRs in human and murine organoids showed region- and species-specific function. To investigate the factors contributing to the patterning of innate immunity in the GI tract, the impact of microbial components was analyzed using murine embryo-derived, never colonized gastric and proximal intestinal organoids. Transcriptional profiling of embryo-derived organoids showed that while expression of some PRRs may depend on environmental cues as expected, an unexpectedly large part of segment-specific expression of PRR signaling components is independent of prior contact with microbial products. Further, analysis of published RNA-seq data as well as in vitro experiments using directed differentiation of organoids into specific cell types showed that expression of innate immune gene also depended on cellular differentiation along the crypt-villus axis. This underlined the importance of cellular differentiation rather than contact to microbial compounds for expression of PRRs. Lastly, analysis of published datasets of RNA-seq and ATAC-seq after knockout of the intestinal transcription factor Cdx2 demonstrated that Cdx2 is likely important for the expression of Nlrp6 and Naip1 in the murine intestine. Future experiments have to support these preliminary findings. Taken together, the expression of a large part of epithelial innate immunity is develop¬mentally defined and conserved in tissue-resident stem cells. The identification of mechanisms governing expression of genes related to immunity will provide further insights into the mechanisms that play a role in the progress of inflammatory diseases.}, subject = {Organoid}, language = {en} } @phdthesis{Jannasch2019, author = {Jannasch, Maren Annika}, title = {In vitro Fremdk{\"o}rpermodellsysteme zur Vorhersage von biomaterialinduzierten Immunreaktionen}, doi = {10.25972/OPUS-16289}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-162893}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {Die Implantation eines Medizinprodukts in den menschlichen K{\"o}rper ruft eine Immunreaktion hervor, die zur fibr{\"o}sen Einkapselung f{\"u}hren kann. Makrophagen in direktem Kontakt mit der Oberfl{\"a}che des Implantats erfassen sensorisch den Fremdk{\"o}rper und {\"u}bersetzten das Signal in die Freisetzung zahlreicher l{\"o}slicher Mediatoren. Das generierte Entz{\"u}ndungsmilieu moduliert die Heilungsreaktion und kann zur Anreicherung von Fibroblasten sowie zur Erh{\"o}hung der Matrixsyntheserate in der Wundumgebung f{\"u}hren. Eine dichte fibr{\"o}se Kapsel um ein Medizinprodukt beeintr{\"a}chtigt den Ersatz von K{\"o}rperstrukturen, das Unterst{\"u}tzen physiologischer K{\"o}rperfunktionen sowie die Effizienz einer medizinischen Therapie. Zur Identifizierung potenzieller Biomaterialkandidaten mit optimalen Eigenschaften ist jedoch eine evidenzbasierte Entscheidungsfindung notwendig und diese wiederum muss durch geeignete Testmethoden unterst{\"u}tzt werden. Zur Erfassung lokaler Effekte nach Implantation eines Biomaterials begr{\"u}ndet die Komplexi-t{\"a}t der ablaufenden Fremdk{\"o}rperreaktion die Anwendung von Tiermodellen als Goldstandard. Die Eingliederung von in vitro Modellsystemen in standardisierte Testverfahren scheitert oft an der Verf{\"u}gbarkeit validierter, verl{\"a}sslicher und reproduzierbarer Methoden. Demnach ist kein standardisiertes in vitro Testverfahren beschrieben, das die komplexen dreidimensionalen Gewebsstrukturen w{\"a}hrend einer Fremdk{\"o}rperreaktion abbildet und sich zur Testung {\"u}ber l{\"a}ngere Kontaktphasen zwischen Blutkomponenten und Biomaterialien eignet. Jedoch k{\"o}nnen in vitro Testungen kosten- und zeiteffizienter sein und durch die Anwendung humaner Zellen eine h{\"o}here {\"U}bertragbarkeit auf den Menschen aufweisen. Zus{\"a}tzlich adressiert die Pr{\"a}ferenz zu in vitro Testmethoden den Aspekt „Reduzierung" der 3R-Prinzipien „Replacement, Reduction, Refinement" (Ersatz, Reduzierung, Verbesserung) von Russel und Burch (1959) zu einer bewussten und begr{\"u}ndeten Anwendung von Tiermodellen in der Wissenschaft. Ziel von diesem Forschungsvorhaben war die Entwicklung von humanen in vitro Modellsystemen, die den Kontakt zu Blutkomponenten sowie die Reaktion des umliegenden Bindegewebes bei lokaler Implantation eines Biomaterials abbilden. Referenzmaterialien, deren Gewebsantwort nach Implantation in Tiere oder den Menschen bekannt ist, dienten als Validierungskriterium f{\"u}r die entwickelten Modellsysteme. Die Anreicherung von Zellen sowie die Bildung extrazellul{\"a}rer Matrix in der Wundumgebung stellen wichtige Teilprozesse w{\"a}hrend einer Fremdk{\"o}rperreaktion dar. F{\"u}r beide Teilprozesse konnte in einem indirekten zellbasierten Modellsystem der Einfluss einer zellvermittelten Konditionierung wie die Freisetzung von l{\"o}slichen Mediatoren durch materialadh{\"a}rente Makrophagen auf die gerichtete Wanderung von Fibroblasten sowie den Umbau eines dreidimensionalen Bindegewebsmodells aufgezeigt werden. Des Weiteren ließ sich das Freisetzungsprofil von Zytokinen durch materialst{\"a}ndige Makrophagen unter verschiedenen Testbedingungen wie der Kontamination mit LPS, der Oberfl{\"a}chenbehandlung mit humanem Blutplasma und der Gegenwart von IL-4 bestimmen. Die anschließende vergleichende statistische Modellierung der generierten komplexen multifaktoriellen Datenmatrix erm{\"o}glichte die {\"U}bersetzung in eine Biomaterialbewertung. Dieses entwickelte Testverfahren eignete sich einerseits zur Validierung von in vitro Testbedingungen sowie andererseits zur Bewertung von Biomaterialien. Dar{\"u}ber hinaus konnte in einem dreidimensionalen Fremdk{\"o}rpermodell die komplexe dreidimensionale Struktur der extrazellul{\"a}ren Matrix in einer Wunde durch die Kombination unterschiedlicher Zell- und Matrixkomponenten biomimetisch nachgebaut werden. Diese neuartigen dreidimensionalen Fremdk{\"o}rpermodelle erm{\"o}glichten die Testung von Biomaterialien {\"u}ber l{\"a}ngere Testphasen und k{\"o}nnen in anschließenden Studien angewandt werden, um dynamische Prozesse zu untersuchen. Zusammenfassend konnten in dieser Arbeit drei unterschiedliche Teststrategien entwickelt werden, die (I) die Bewertung von Teilprozessen erm{\"o}glichen, (II) die Identifizierung verl{\"a}sslicher Testbedingungen unterst{\"u}tzen und (III) biomimetisch ein Wundgewebe abbilden. Wesentlich ist, dass biomimetisch ein dreidimensionales Gewebemodell entwickelt werden konnte, das eine verl{\"a}ssliche Unterscheidungskapazit{\"a}t zwischen Biomaterialien aufweist.}, subject = {Biomaterial}, language = {de} } @phdthesis{Kauk2018, author = {Kauk, Michael}, title = {Investigating the Molecular Mechanism of Receptor Activation at Muscarinic Receptors by Means of Pathway-Specific Dualsteric Ligands and Partial Agonists}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-173729}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2018}, abstract = {G protein-coupled receptors (GPCRs) form the biggest receptor family that is encoded in the human genome and represent the most druggable target structure for modern therapeutics respectively future drug development. Belonging to aminergic class A GPCRs muscarinic Acetylcholine receptors (mAChRs) are already now of clinical relevance and are also seen as promising future drug targets for treating neurodegenerative diseases like Alzheimer or Parkinson. The mAChR family consist of five subtypes showing high sequence identity for the endogenous ligand binding region and thus it is challenging until now to selectively activate a single receptor subtype. A well accepted method to study ligand binding, dynamic receptor activation and downstream signaling is the fluorescence resonance energy transfer (FRET) application. Here, there relative distance between two fluorophores in close proximity (<10 nm) can be monitored in a dynamic manner. The perquisite for that is the spectral overlap of the emission spectrum of the first fluorophore with the excitation spectrum of the second fluorophore. By inserting two fluorophores into the molecular receptor structure receptor FRET sensors can serve as a powerful tool to study dynamic receptor pharmacology. Dualsteric Ligands consist of two different pharmacophoric entities and are regarded as a promising ligand design for future drug development. The orthosteric part interacts with high affinity with the endogenous ligand binding region whereas the allosteric part binds to a different receptor region mostly located in the extracellular vestibule. Both moieties are covalently linked. Dualsteric ligands exhibit a dynamic ligand binding. The dualsteric binding position is characterized by a simultaneous binding of the orthosteric and allosteric moiety to the receptor and thus by receptor activation. In the purely allosteric binding position no receptor activation can be monitored. In the present work the first receptor FRET sensor for the muscarinic subtype 1 (M1) was generated and characterized. The M1-I3N-CFP sensor showed an unaltered physiological behavior as well as ligand and concentration dependent responses. The sensor was used to characterize different sets of dualsteric ligands concerning their pharmacological properties like receptor activation. It was shown that the hybrids consisting of the synthetic full agonist iperoxo and the positive allosteric modulator of BQCA type is very promising. Furthermore, it was shown for orthosteric as well as dualsteric ligands that the degree of receptor activation is highly dependent on the length of and the chemical properties of the linker moiety. For dualsteric ligands a bell-shaped activation characteristic was reported for the first time, suggesting that there is an optimal linker length for dualsteric ligands. The gained knowledge about hybrid design was then used to generate and characterize the first photo-switchable dualsteric ligand. The resulting hybrids were characterized with the M1-I3N-CFP sensor and were described as photo-inactivatable and dimmable. In addition to the ligand characterization the ligand application methodology was further developed and improved. Thus, a fragment-based screening approach for dualsteric ligands was reported in this study for the first time. With this approach it is possible to investigate dualsteric ligands in greater detail by applying either single ligand fragments alone or in a mixture of building blocks. These studies revealed the insights that the effect of dualsteric ligands on a GPCR can be rebuild by applying the single building blocks simultaneously. The fragment-based screening provides high potential for the molecular understanding of dualsteric ligands and for future screening approaches. Next, a further development of the standard procedure for measuring FRET by sensitized emission was performed. Under normal conditions single cell FRET is measured on glass coverslips. After coating the coverslips surface with a 20 nm thick gold layer an increased FRET efficiency up to 60 \% could be reported. This finding was validated in different approaches und in different configurations. This FRET enhancement by plasmonic surfaces was until yet unreported in the literature for physiological systems and make FRET for future projects even more powerful.}, subject = {G-Protein gekoppelte Rezeptoren}, language = {en} } @phdthesis{Bemm2018, author = {Bemm, Felix Mathias}, title = {Genetic foundation of unrivaled survival strategies - Of water bears and carnivorous plants -}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-157109}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2018}, abstract = {All living organisms leverage mechanisms and response systems to optimize reproduction, defense, survival, and competitiveness within their natural habitat. Evolutionary theories such as the universal adaptive strategy theory (UAST) developed by John Philip Grime (1979) attempt to describe how these systems are limited by the trade-off between growth, maintenance and regeneration; known as the universal three-way trade-off. Grime introduced three adaptive strategies that enable organisms to coop with either high or low intensities of stress (e.g., nutrient deficiency) and environmental disturbance (e.g., seasons). The competitor is able to outcompete other organisms by efficiently tapping available resources in environments of low intensity stress and disturbance (e.g., rapid growers). A ruderal specism is able to rapidly complete the life cycle especially during high intensity disturbance and low intensity stress (e.g., annual colonizers). The stress tolerator is able to respond to high intensity stress with physiological variability but is limited to low intensity disturbance environments. Carnivorous plants like D. muscipula and tardigrades like M. tardigradum are two extreme examples for such stress tolerators. D. muscipula traps insects in its native habitat (green swamps in North and South Carolina) with specialized leaves and thereby is able to tolerate nutrient deficient soils. M. tardigradum on the other side, is able to escape desiccation of its terrestrial habitat like mosses and lichens which are usually covered by a water film but regularly fall completely dry. The stress tolerance of the two species is the central study object of this thesis. In both cases, high througput sequencing data and methods were used to test for transcriptomic (D. muscipula) or genomic adaptations (M. tardigradum) which underly the stress tolerance. A new hardware resource including computing cluster and high availability storage system was implemented in the first months of the thesis work to effectively analyze the vast amounts of data generated for both projects. Side-by-side, the data management resource TBro [14] was established together with students to intuitively approach complex biological questions and enhance collaboration between researchers of several different disciplines. Thereafter, the unique trapping abilities of D. muscipula were studied using a whole transcriptome approach. Prey-dependent changes of the transcriptional landscape as well as individual tissue-specific aspects of the whole plant were studied. The analysis revealed that non-stimulated traps of D. muscipula exhibit the expected hallmarks of any typical leaf but operates evolutionary conserved stress-related pathways including defense-associated responses when digesting prey. An integrative approach, combining proteome and transcriptome data further enabled the detailed description of the digestive cocktail and the potential nutrient uptake machinery of the plant. The published work [25] as well as a accompanying video material (https://www.eurekalert.org/pub_releases/ 2016-05/cshl-fgr042816.php; Video credit: S{\"o}nke Scherzer) gained global press coverage and successfully underlined the advantages of D. muscipula as experimental system to understand the carnivorous syndrome. The analysis of the peculiar stress tolerance of M. tardigradum during cryptobiosis was carried out using a genomic approach. First, the genome size of M. tardigradum was estimated, the genome sequenced, assembled and annotated. The first draft of M. tardigradum and the workflow used to established its genome draft helped scrutinizing the first ever released tardigrade genome (Hypsibius dujardini) and demonstrated how (bacterial) contamination can influence whole genome analysis efforts [27]. Finally, the M. tardigradum genome was compared to two other tardigrades and all species present in the current release of the Ensembl Metazoa database. The analysis revealed that tardigrade genomes are not that different from those of other Ecdysozoa. The availability of the three genomes allowed the delineation of their phylogenetic position within the Ecdysozoa and placed them as sister taxa to the nematodes. Thereby, the comparative analysis helped to identify evolutionary trends within this metazoan lineage. Surprisingly, the analysis did not reveal general mechanisms (shared by all available tardigrade genomes) behind the arguably most peculiar feature of tardigrades; their enormous stress tolerance. The lack of molecular evidence for individual tardigrade species (e.g., gene expression data for M. tardigradum) and the non-existence of a universal experimental framework which enables hypothesis testing withing the whole phylum Tardigrada, made it nearly impossible to link footprints of genomic adaptations to the unusual physiological capabilities. Nevertheless, the (comparative) genomic framework established during this project will help to understand how evolution tinkered, rewired and modified existing molecular systems to shape the remarkable phenotypic features of tardigrades.}, subject = {B{\"a}rtierchen}, language = {en} } @phdthesis{Weigel2019, author = {Weigel, Tobias Maximilian}, title = {Entwicklung von 3D-Herzschrittmacher-Elektroden auf Basis von Kohlenstoffnanofasern}, doi = {10.25972/OPUS-17636}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-176362}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {Herzschrittmachersysteme sind eine weitverbreitete M{\"o}glichkeit Herz-Kreislauf-Erkrankungen zu behandeln. Wegen der nat{\"u}rlichen Reaktion des Immunsystems auf Fremdk{\"o}rper, erfolgt aber eine fortschreitende Verkapselung der Herzschrittmacherelektrode. Die Folge ist eine ansteigende Verminderung der Stimulationseffizienz durch Erh{\"o}hung der Anregungsschwelle. Die Integration der Elektrode in das Gewebe ist dabei mangelhaft und wird bestimmt durch Implantateigenschaften wie Gr{\"o}ße, Flexibilit{\"a}t und Dimensionalit{\"a}t. Um die Integration zu verbessern, stellen dreidimensionale (3D) bzw. gewebeartige Elektroden eine Alternative zu den derzeit verwendeten planaren Metallelektroden dar. Zur Entwicklung einer leitf{\"a}higen, 3D und faserf{\"o}rmigen Elektrode wurden in dieser Arbeit Kohlenstoff-Nanofaser-Scaffolds {\"u}ber Elektrospinnen hergestellt. Durch die Modifikation des Faserger{\"u}stes mit Natriumchlorid (NaCl) w{\"a}hrend der Scaffoldherstellung, konnte das Fasernetzwerk aufgelockert und Poren generiert werden. Die Kohlenstofffaser-Elektroden zeigten einen effizienten Energie{\"u}bertrag, welcher vergleichbar mit heutigen Titannitrid (TiN) -Elektroden ist. Die Auflockerung des Fasergewebes hatte eine verbesserte Flexibilit{\"a}t des Faserscaffolds zu Folge. Neben der Flexibilit{\"a}t, konnte auch die Infiltration von Zellen in das por{\"o}se Faserscaffold erheblich verbessert werden. Dabei konnten Fibroblasten durch das gesamte Scaffold migrieren. Die Kompatibilit{\"a}t mit kardialen Zellen, die Grundvoraussetzung von Herzschrittmacherelektroden, wurde in vitro nachgewiesen. Durch die Kombination aus dem 3D-Elektrodenger{\"u}st mit einer Co-Kultur aus humanen Kardiomyozyten, mesenchymalen Stammzellen und Fibroblasten, erfolgte eine Einbettung der Elektrode in funktionelles kardiales Gewebe. Dadurch konnte ein lebender Gewebe-Elektroden-Hybrid generiert werden, welcher m{\"o}glicherweise die Elektrode vor Immunzellen in vivo abschirmen kann. Eine Zusammenf{\"u}hrung der hybriden Elektrode mit einen Tissue-Engineerten humanen kardialen Patch in vitro, f{\"u}hrte zu Bildung einer nahtlosen Elektronik-Gewebe-Schnittstelle. Die fusionierte Einheit wurde abschließend auf ihre mechanische Belastbarkeit getestet und konnte {\"u}ber einen Elektroden-Anschluss elektrisch stimuliert werden.}, subject = {Herzschrittmacher}, language = {de} } @phdthesis{Yu2019, author = {Yu, Sung-Huan}, title = {Development and application of computational tools for RNA-Seq based transcriptome annotations}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-176468}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {In order to understand the regulation of gene expression in organisms, precise genome annotation is essential. In recent years, RNA-Seq has become a potent method for generating and improving genome annotations. However, this Approach is time consuming and often inconsistently performed when done manually. In particular, the discovery of non-coding RNAs benefits strongly from the application of RNA-Seq data but requires significant amounts of expert knowledge and is labor-intensive. As a part of my doctoral study, I developed a modular tool called ANNOgesic that can detect numerous transcribed genomic features, including non-coding RNAs, based on RNA-Seq data in a precise and automatic fashion with a focus on bacterial and achaeal species. The software performs numerous analyses and generates several visualizations. It can generate annotations of high-Resolution that are hard to produce using traditional annotation tools that are based only on genome sequences. ANNOgesic can detect numerous novel genomic Features like UTR-derived small non-coding RNAs for which no other tool has been developed before. ANNOgesic is available under an open source license (ISCL) at https://github.com/Sung-Huan/ANNOgesic. My doctoral work not only includes the development of ANNOgesic but also its application to annotate the transcriptome of Staphylococcus aureus HG003 - a strain which has been a insightful model in infection biology. Despite its potential as a model, a complete genome sequence and annotations have been lacking for HG003. In order to fill this gap, the annotations of this strain, including sRNAs and their functions, were generated using ANNOgesic by analyzing differential RNA-Seq data from 14 different samples (two media conditions with seven time points), as well as RNA-Seq data generated after transcript fragmentation. ANNOgesic was also applied to annotate several bacterial and archaeal genomes, and as part of this its high performance was demonstrated. In summary, ANNOgesic is a powerful computational tool for RNA-Seq based annotations and has been successfully applied to several species.}, subject = {Genom}, language = {en} } @phdthesis{Rydzek2019, author = {Rydzek, Julian}, title = {NF-κB/NFAT Reporter Cell Platform for Chimeric Antigen Receptor (CAR)-Library Screening}, doi = {10.25972/OPUS-17918}, url = {http://nbn-resolving.de/urn:nbn:de:bvb:20-opus-179187}, school = {Universit{\"a}t W{\"u}rzburg}, year = {2019}, abstract = {Immunotherapy with engineered T cells expressing a tumor-specific chimeric antigen receptor (CAR) is under intense preclinical and clinical investigation. This involves a rapidly increasing portfolio of novel target antigens and CAR designs that need to be tested in time- and work-intensive screening campaigns in primary T cells. Therefore, we anticipated that a standardized screening platform, similar as in pharmaceutical small molecule and antibody discovery, would facilitate the analysis of CARs by pre-selecting lead candidates from a large pool of constructs that differ in their extracellular and intracellular modules. Because CARs integrate structural elements of the T cell receptor (TCR) complex and engage TCR-associated signaling molecules upon stimulation, we reasoned that the transcription factors nuclear factor-κB (NF-κB) and nuclear factor of activated T cells (NFAT) could serve as surrogate markers for primary T cell function. The nuclear translocation of both transcription factors in primary T cells, which we observed following CAR stimulation, supported our rationale to use NF-κB and NFAT as indicators of CAR-mediated activation in a screening platform. To enable standardized and convenient analyses, we have established a CAR-screening platform based on the human T cell lymphoma line Jurkat that has been modified to provide rapid detection of NF-κB and NFAT activation. For this purpose, Jurkat cells contained NF-κB and NFAT-inducible reporter genes that generate a duplex output of cyan fluorescent protein (CFP) and green fluorescent protein (GFP), respectively. Upon stimulation of NF-κB/NFAT reporter cells, the expression of both fluorophores could be readily quantified in high-throughput screening campaigns by flow cytometry. We modified the reporter cells with CD19-specific and ROR1-specific CARs, and we co-cultured them with antigen-positive stimulator cells to analyze NF-κB and NFAT activation. CAR-induced reporter signals could already be detected after 6 hours. The optimal readout window with high-level reporter activation was set to 24 hours, allowing the CAR-screening platform to deliver results in a rapid turnaround time. A reporter cell-screening campaign of a spacer library with CARs comprising a short, intermediate or long IgG4-Fc domain allowed distinguishing functional from non-functional constructs. Similarly, reporter cell-based analyses identified a ROR1-CAR with 4-1BB domain from a library with different intracellular signal modules due to its ability to confer high NF-κB activation, consistent with data from in vitro and in vivo studies with primary T cells. The results of both CAR screening campaigns were highly reproducible, and the time required for completing each testing campaign was substantially shorter with reporter cells (6 days) compared to primary T cells (21 days). We further challenged the reporter cells in a large-scale screening campaign with a ROR1 CAR library comprising mutations in the VH CDR3 sequence of the R11 scFv. This region is crucial for binding the R11 epitope of ROR1, and we anticipated that mutations here would cause a loss of specificity and affinity for most of the CAR variants. This provided the opportunity to determine whether the CAR screening platform was able to retrieve functional constructs from a large pool of CAR variants. Indeed, using a customized pre enrichment and screening strategy, the reporter cells identified a functional CAR variant that was present with a frequency of only 6 in 1.05x10^6. As our CAR-screening platform enabled the analysis of activating signal modules, it encouraged us to also evaluate inhibitory signal modules that change the CAR mode of action. Such an inhibitory CAR (iCAR) can be used in logic gates with an activating CAR to interfere with T cell stimulation. By selecting appropriate target antigens for iCAR and CAR, this novel application aims to improve the selectivity towards tumor cells, and it could readily be studied using our screening platform. Accordingly, we tested CD19-specific iCARs with inhibitory PD-1 signal module for their suppressive effect on reporter gene activation. In logic gates with CAR or TCR stimulation, a decrease of NF-κB and NFAT signals was only observed when activating and inhibitory receptors were forced into spatial proximity. These results were further verified by experiments with primary T cells. In conclusion, our reporter cell system is attractive as a platform technology because it is independent of testing in primary T cells, exportable between laboratories, and scalable to enable small- to large-scale screening campaigns of CAR libraries. The pre-selection of appropriate lead candidates with optimal extracellular and intracellular modules can reduce the number of CAR constructs to be investigated in further in vitro and in vivo studies with primary T cells. We are therefore confident that our CAR-screening platform based on NF-κB/NFAT reporter cells will be useful to accelerate translational research by facilitating the evaluation of CARs with novel design parameters.}, subject = {Antigenrezeptor}, language = {en} }