TY  - JOUR
A1  - Fröhlich, Kathrin S.
A1  - Papenfort, Kai
A1  - Berger, Allison A.
A1  - Vogel, Jörg
T1  - A conserved RpoS-dependent small RNA controls the synthesis of major porin OmpD
JF  - Nucleic Acids Research
N2  - A remarkable feature of many small non-coding RNAs (sRNAs) of Escherichia coli and Salmonella is their accumulation in the stationary phase of bacterial growth. Several stress response regulators and sigma factors have been reported to direct the transcription of stationary phase-specific sRNAs, but a widely conserved sRNA gene that is controlled by the major stationary phase and stress sigma factor, Sigma(S) (RpoS), has remained elusive. We have studied in Salmonella the conserved SdsR sRNA, previously known as RyeB, one of the most abundant stationary phase-specific sRNAs in E. coli. Alignments of the sdsR promoter region and genetic analysis strongly suggest that this sRNA gene is selectively transcribed by Sigma(S). We show that SdsR down-regulates the synthesis of the major Salmonella porin OmpD by Hfq-dependent base pairing; SdsR thus represents the fourth sRNA to regulate this major outer membrane porin. Similar to the InvR, MicC and RybB sRNAs, SdsR recognizes the ompD mRNA in the coding sequence, suggesting that this mRNA may be primarily targeted downstream of the start codon. The SdsR-binding site in ompD was localized by 3'-RACE, an experimental approach that promises to be of use in predicting other sRNA-target interactions in bacteria.
KW  - shock sigma factor
KW  - general stress response
KW  - down regulation
KW  - stationary phase
KW  - salmonella enterica
KW  - messenger RNA
KW  - escherichia coli
KW  - enterica serovar typhimurium
KW  - outer-membrane proteins
KW  - small noncoding RNAs
Y1  - 2012
U6  - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-134230
VL  - 40
IS  - 8
ER  - 
TY  - JOUR
A1  - Kato, Hiroki
A1  - Lu, Qiping
A1  - Rapaport, Doron
A1  - Kozjak-Pavlovic, Vera
T1  - Tom70 Is Essential for PINK1 Import into Mitochondria
JF  - PLoS ONE
N2  - PTEN induced kinase 1 (PINK1) is a serine/threonine kinase in the outer membrane of mitochondria (OMM), and known as a responsible gene of Parkinson's disease (PD). The precursor of PINK1 is synthesized in the cytosol and then imported into the mitochondria via the translocase of the OMM (TOM) complex. However, a large part of PINK1 import mechanism remains unclear. In this study, we examined using cell-free system the mechanism by which PINK1 is targeted to and assembled into mitochondria. Surprisingly, the main component of the import channel, Tom40 was not necessary for PINK1 import. Furthermore, we revealed that the import receptor Tom70 is essential for PINK1 import. In addition, we observed that although PINK1 has predicted mitochondrial targeting signal, it was not processed by the mitochondrial processing peptidase. Thus, our results suggest that PINK1 is imported into mitochondria by a unique pathway that is independent of the TOM core complex but crucially depends on the import receptor Tom70.
KW  - binding
KW  - outer-membrane proteins
KW  - Parkinsons diesease
KW  - intracellular membranes
KW  - quality control
KW  - pathway
KW  - recruitment
KW  - biogenesis
KW  - mechanisms
KW  - complex
Y1  - 2013
U6  - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-131061
VL  - 8
IS  - 3
ER  -