TY  - JOUR
A1  - Herweg, Jo-Ana
A1  - Hansmeier, Nicole
A1  - Otto, Andreas
A1  - Geffken, Anna C.
A1  - Subbarayal, Prema
A1  - Prusty, Bhupesh K.
A1  - Becher, Dörte
A1  - Hensel, Michael
A1  - Schaible, Ulrich E.
A1  - Rudel, Thomas
A1  - Hilbi, Hubert
T1  - Purification and proteomics of pathogen-modified vacuoles and membranes
JF  - Frontiers in Cellular and Infection Microbiology
N2  - Certain pathogenic bacteria adopt an intracellular lifestyle and proliferate in eukaryotic host cells. The intracellular niche protects the bacteria from cellular and humoral components of the mammalian immune system, and at the same time, allows the bacteria to gain access to otherwise restricted nutrient sources. Yet, intracellular protection and access to nutrients comes with a price, i.e., the bacteria need to overcome cell-autonomous defense mechanisms, such as the bactericidal endocytic pathway. While a few bacteria rupture the early phagosome and escape into the host cytoplasm, most intracellular pathogens form a distinct, degradation-resistant and replication-permissive membranous compartment. Intracellular bacteria that form unique pathogen vacuoles include Legionella, Mycobacterium, Chlamydia, Simkania, and Salmonella species. In order to understand the formation of these pathogen niches on a global scale and in a comprehensive and quantitative manner, an inventory of compartment-associated host factors is required. To this end, the intact pathogen compartments need to be isolated, purified and biochemically characterized. Here, we review recent progress on the isolation and purification of pathogen-modified vacuoles and membranes, as well as their proteomic characterization by mass spectrometry and different validation approaches. These studies provide the basis for further investigations on the specific mechanisms of pathogen-driven compartment formation.
KW  - spectrometry-based proteomics
KW  - Mycobacterium tuberculosis
KW  - Chlamydia
KW  - Salmonella
KW  - bacterium Legionella pneumophila
KW  - endocytic multivesicular bodies
KW  - phagosome maturation arrest
KW  - III secretion system
KW  - endoplasmic reticulum
KW  - Chlamydia trachomatis
KW  - Simkania negevensis
KW  - intracellular bacteria
KW  - host pathogen interactions
KW  - immuno-magnetic purification
KW  - Legionella
KW  - Mycobacterium
KW  - Simkania
KW  - pathogen vacuole
Y1  - 2015
U6  - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-151823
VL  - 5
IS  - 48
ER  - 
TY  - JOUR
A1  - Wu, Yu
A1  - Pons, Valérie
A1  - Goudet, Amélie
A1  - Panigai, Laetitia
A1  - Fischer, Annette
A1  - Herweg, Jo-Ana
A1  - Kali, Sabrina
A1  - Davey, Robert A.
A1  - Laporte, Jérôme
A1  - Bouclier, Céline
A1  - Yousfi, Rahima
A1  - Aubenque, Céline
A1  - Merer, Goulven
A1  - Gobbo, Emilie
A1  - Lopez, Roman
A1  - Gillet, Cynthia
A1  - Cojean, Sandrine
A1  - Popoff, Michel R.
A1  - Clayette, Pascal
A1  - Le Grand, Roger
A1  - Boulogne, Claire
A1  - Tordo, Noël
A1  - Lemichez, Emmanuel
A1  - Loiseau, Philippe M.
A1  - Rudel, Thomas
A1  - Sauvaire, Didier
A1  - Cintrat, Jean-Christophe
A1  - Gillet, Daniel
A1  - Barbier, Julien
T1  - ABMA, a small molecule that inhibits intracellular toxins and pathogens by interfering with late endosomal compartments
JF  - Scientific Reports
N2  - Intracellular pathogenic microorganisms and toxins exploit host cell mechanisms to enter, exert their deleterious effects as well as hijack host nutrition for their development. A potential approach to treat multiple pathogen infections and that should not induce drug resistance is the use of small molecules that target host components. We identifed the compound 1-adamantyl (5-bromo-2-methoxybenzyl) amine (ABMA) from a cell-based high throughput screening for its capacity to protect human cells and mice against ricin toxin without toxicity. This compound efciently protects cells against various toxins and pathogens including viruses, intracellular bacteria and parasite. ABMA provokes Rab7-positive late endosomal compartment accumulation in mammalian cells without affecting other organelles (early endosomes, lysosomes, the Golgi apparatus, the endoplasmic reticulum or the nucleus). As the mechanism of action of ABMA is restricted to host-endosomal compartments, it reduces cell infection by pathogens that depend on this pathway to invade cells. ABMA may represent a novel class of broad-spectrum compounds with therapeutic potential against diverse severe infectious diseases.
KW  - biology
KW  - antimicrobials
KW  - high-throughput screening
KW  - infectious diseases
Y1  - 2017
U6  - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-173170
VL  - 7
ER  - 
TY  - THES
A1  - Herweg, Jo-Ana
T1  - Die Simkania-Vakuole: Die Rolle von ER, retro-/anterograden Protein- und Lipidtransport
T1  - The Simkania-vacuole: the role of ER, retro-/anterograde protein- and lipid-transport
N2  - Simkania negevensis (Sn) is a Chlamydia-like obligate intracellular bacterium which replicates within a membrane bound vacuole, termed SCV (Simkania-containing vacuole). The SCV is a unique compartment closely associated with ER-membranes, consequently ER-stress is blocked by the bacteria. SCV morphology is similar among epithelial cells (HeLa229, A549, HEp-2) and macrophages (THP1). The SCV represents the first intracellular interface between the host and pathogen which serves as a replication niche. Identifying human and bacterial factors associated with ER-SCV-membranes should contribute towards the understanding of SCV composition and formation as well as interactions with ER or transports. Comparative studies of the SCV should indicate similarities to the chlamydial inclusion since some host cell factors are already known for Chlamydia. In this thesis, a purification protocol has been established that is applicable to HeLa229 and THP1 ER-SCV-membranes and has been further utilized for proteome and lipidome analyses. 302 bacterial and 1178 human proteins composing ER-SCV-membranes and 885 bacterial proteins composing purified Sn have been identified by using label-free mass spectrometry measurements. Among the human factors of non or Sn infected ER-(SCV-) membranes we found 51 enriched or depleted proteins in addition to 57 transport associated ones that indicated infection induced differences among intracellular protein transport. Contrary regulation of retrograde and anterograde transported proteins could be confirmed by using RNA interference and inhibitor tests, whereby Clathrin-associated and COPI vesicles seem to play a central role. Application of Retro-inhibitors, which interfered with retrograde transport processes between endosome to Golgi or early to late endosomes, as well as Bafilomycin A1 (retrograde, late endosomes and lysosomes) and Brefeldin A (anterograde, ER and Golgi) exerted a strong influence on SCV formation, morphology and intracellular lipid transport. By using label-free mass spectrometry measurements and thin layer chromatography we could determine differences in lipid levels within Sn infected cells, ER-SCV-membranes and purified Sn in comparison to uninfected cells. In addition to lipid enrichment or depletion in whole-cell extracts and ER-SCV-membranes, we identified two infection-specific lipids, cholesterol-ß-Dglucoside and PE 30:0. Further, high-throughput RNA interference tests indicated a dependence of Sn infections on endosome to Golgi and Clathrin-associated vesicle transports. Taken together, we were able to identify initial potential SCV-associated proteins and lipids that were connected to bacterial infection. Furthermore, SCV formation and Sn infectiousness depends on retrograde transport processes and therefore also on acquisition of nutrients, such as lipids.
N2  - Simkania negevensis (Sn) repliziert als Chlamydia-ähnliches obligat intrazelluläres Bakterium auch in einer membranumschlossenen Vakuole, die als SCV (engl. Simkania-containing vacuole) bezeichnet wird. Die SCV ist ein bis jetzt einzigartiges Kompartiment, das stark mit ER-Membranen assoziiert ist, wobei ER-Stress von den Bakterien blockiert wird. Die Morphologie der SCV scheint dabei in Epithelzellen (HeLa229, A549, HEp-2) als auch in Makrophagen (THP1) gleich zu sein. Die SCV stellt die erste intrazelluläre Berührungsfläche dar, an der Interaktionen zwischen Wirt und Pathogen erfolgen, und dient gleichzeitig als Replikationsnische. Mithilfe der Identifizierung von humanen und bakteriellen Faktoren, die mit der ER-SCV-Membran assoziiert sind, sollten die Zusammensetzung der SCV sowie mögliche Interaktionen mit dem ER oder zellulären Transportwegen ermittelt werden. Vergleichsstudien von SCV-assoziierten Proteinen sollten Ähnlichkeiten zur chlamydialen Inklusion aufzeigen, für die bereits einige interagierende Wirtszellfaktoren beschrieben wurden. In dieser Arbeit wurde ein Aufreinigungsprotokoll etabliert, das sowohl für ER-SCVMembranen aus HeLa229 als auch THP1 geeignet war und für spätere Proteom- oder Lipidomanalysen diente. Über markierungsfreie massenspektrometrische Messungen konnten 302 bakterielle und 1178 humane Proteine in ER-(SCV-) Membranen und 885 bakterielle Proteine in aufgereinigten Sn identifiziert werden. In ER-(SCV-) Membranen von nicht und Sn-infizierten HeLa229 Zellen befanden sich 51 unterschiedlich verteilte und 57 transportassoziierte humane Proteine, die auf infektionsinduzierte Unterschiede beim intrazellulären Proteintransport hindeuteten. Eine entgegengesetzte Regulation von retro- und anterograd transportierten Proteinen konnte mithilfe von RNA-Interferenz und dem Einsatz geeigneter Inhibitoren bestätigt werden, wobei sich zeigte, dass Clathrin-assoziierte und COPI-Vesikel eine zentrale Rolle spielen. Retro-Inhibitoren, die den retrograden Transport zwischen Endosomen zum Golgi oder zwischen frühen und späten Endosomen inhibieren, sowie Bafilomycin A1 (retrograd, späte Endosomen und Lysosomen) und Brefeldin A (anterograd, ER und Golgi), beeinflussten massiv die SCV-Ausbildung, SCV-Morphologie und den intrazellulären Lipidtransport. Über markierungsfreie massenspektrometrische und dünnschichtchromatographische Analysen konnten erste Unterschiede im Lipidvorkommen in Sn-infizierten Zellen, an ER-SCVMembranen und in aufgereinigten Sn im Vergleich zu nicht infizierten Zellen ermittelt werden. Dabei konnten neben An- und Abreicherungen in Gesamtzellextrakten sowie ER-SCVMembranen zwei infektionsspezifische Lipide, Cholesterol-ß-D-Glykosid und PE 30:0, identifiziert werden. Weiterführende umfangreiche RNA-Interferenzstudien weisen darauf hin, dass die Sn-Infektion vom Endosomen-zum-Golgi-Transport und vom Clathrin-assoziierten Vesikeltransport abhängig ist. Zusammenfassend konnten erste mögliche SCV-assoziierte Proteine und Lipide identifiziert werden, die mit der bakteriellen Infektion verbunden waren. Des Weiteren hängen eine stabile SCV-Ausbildung und Sn-Infektivität von verschiedenen retrograden Transportwegen und damit von dem Erwerb von Nährstoffen wie bspw. Lipiden ab.
KW  - Simkania
KW  - Vakuole
KW  - Proteintransport
KW  - Lipidtransport
Y1  - 2018
U6  - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-136844
ER  -