TY - JOUR A1 - Zhao, Bo A1 - Zhang, Keya A1 - Bhuripanyo, Karan A1 - Choi, Chan Hee J. A1 - Villhauer, Eric B. A1 - Li, Heng A1 - Zheng, Ning A1 - Kiyokawa, Hiroaki A1 - Schindelin, Hermann A1 - Yin, Jun T1 - Profiling the Cross Reactivity of Ubiquitin with the Nedd8 Activating Enzyme by Phage Display JF - PLoS ONE N2 - The C-terminal peptides of ubiquitin (UB) and UB-like proteins (UBLs) play a key role in their recognition by the specific activating enzymes (E1s) to launch their transfer through the respective enzymatic cascades thus modifying cellular proteins. UB and Nedd8, a UBL regulating the activity of cullin-RING UB ligases, only differ by one residue at their C-termini; yet each has its specific E1 for the activation reaction. It has been reported recently that UAE can cross react with Nedd8 to enable its passage through the UB transfer cascade for protein neddylation. To elucidate differences in UB recognition by UAE and NAE, we carried out phage selection of a UB library with randomized C-terminal sequences based on the catalytic formation of UB similar to NAE thioester conjugates. Our results confirmed the previous finding that residue 72 of UB plays a "gate-keeping" role in E1 selectivity. We also found that diverse sequences flanking residue 72 at the UB C-terminus can be accommodated by NAE for activation. Furthermore heptameric peptides derived from the C-terminal sequences of UB variants selected for NAE activation can function as mimics of Nedd8 to form thioester conjugates with NAE and the downstream E2 enzyme Ubc12 in the Nedd8 transfer cascade. Once the peptides are charged onto the cascade enzymes, the full-length Nedd8 protein is effectively blocked from passing through the cascade for the critical modification of cullin. We have thus identified a new class of inhibitors of protein neddylation based on the profiles of the UB C-terminal sequences recognized by NAE. KW - protein NEDD8 KW - E1 KW - system KW - conjugation KW - pathway KW - complex KW - ligases KW - purification KW - neddylation KW - expression Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-128479 SN - 1932-6203 VL - 8 IS - e70312 ER - TY - THES A1 - Wojtkowiak, Harald T1 - Planungssystem zur Steigerung der Autonomie von Kleinstsatelliten T1 - Planningsystem to increase the autonomy of small satellites N2 - Der Betrieb von Satelliten wird sich in Zukunft gravierend ändern. Die bisher ausgeübte konventionelle Vorgehensweise, bei der die Planung der vom Satelliten auszuführenden Aktivitäten sowie die Kontrolle hierüber ausschließlich vom Boden aus erfolgen, stößt bei heutigen Anwendungen an ihre Grenzen. Im schlimmsten Fall verhindert dieser Umstand sogar die Erschließung bisher ungenutzter Möglichkeiten. Der Gewinn eines Satelliten, sei es in Form wissenschaftlicher Daten oder der Vermarktung satellitengestützter Dienste, wird daher nicht optimal ausgeschöpft. Die Ursache für dieses Problem lässt sich im Grunde auf eine ausschlaggebende Tatsache zurückführen: Konventionelle Satelliten können ihr Verhalten, d.h. die Folge ihrer Tätigkeiten, nicht eigenständig anpassen. Stattdessen erstellt das Bedienpersonal am Boden - vor allem die Operatoren - mit Hilfe von Planungssoftware feste Ablaufpläne, die dann in Form von Kommandosequenzen von den Bodenstationen aus an die jeweiligen Satelliten hochgeladen werden. Dort werden die Befehle lediglich überprüft, interpretiert und strikt ausgeführt. Die Abarbeitung erfolgt linear. Situationsbedingte Änderungen, wie sie vergleichsweise bei der Codeausführung von Softwareprogrammen durch Kontrollkonstrukte, zum Beispiel Schleifen und Verzweigungen, üblich sind, sind typischerweise nicht vorgesehen. Der Operator ist daher die einzige Instanz, die das Verhalten des Satelliten mittels Kommandierung, per Upload, beeinflussen kann, und auch nur dann, wenn ein direkter Funkkontakt zwischen Satellit und Bodenstation besteht. Die dadurch möglichen Reaktionszeiten des Satelliten liegen bestenfalls bei einigen Sekunden, falls er sich im Wirkungsbereich der Bodenstation befindet. Außerhalb des Kontaktfensters kann sich die Zeitschranke, gegeben durch den Orbit und die aktuelle Position des Satelliten, von einigen Minuten bis hin zu einigen Stunden erstrecken. Die Signallaufzeiten der Funkübertragung verlängern die Reaktionszeiten um weitere Sekunden im erdnahen Bereich. Im interplanetaren Raum erstrecken sich die Zeitspannen aufgrund der immensen Entfernungen sogar auf mehrere Minuten. Dadurch bedingt liegt die derzeit technologisch mögliche, bodengestützte, Reaktionszeit von Satelliten bestenfalls im Bereich von einigen Sekunden. Diese Einschränkung stellt ein schweres Hindernis für neuartige Satellitenmissionen, bei denen insbesondere nichtdeterministische und kurzzeitige Phänomene (z.B. Blitze und Meteoreintritte in die Erdatmosphäre) Gegenstand der Beobachtungen sind, dar. Die langen Reaktionszeiten des konventionellen Satellitenbetriebs verhindern die Realisierung solcher Missionen, da die verzögerte Reaktion erst erfolgt, nachdem das zu beobachtende Ereignis bereits abgeschlossen ist. Die vorliegende Dissertation zeigt eine Möglichkeit, das durch die langen Reaktionszeiten entstandene Problem zu lösen, auf. Im Zentrum des Lösungsansatzes steht dabei die Autonomie. Im Wesentlichen geht es dabei darum, den Satelliten mit der Fähigkeit auszustatten, sein Verhalten, d.h. die Folge seiner Tätigkeiten, eigenständig zu bestimmen bzw. zu ändern. Dadurch wird die direkte Abhängigkeit des Satelliten vom Operator bei Reaktionen aufgehoben. Im Grunde wird der Satellit in die Lage versetzt, sich selbst zu kommandieren. Die Idee der Autonomie wurde im Rahmen der zugrunde liegenden Forschungsarbeiten umgesetzt. Das Ergebnis ist ein autonomes Planungssystem. Dabei handelt es sich um ein Softwaresystem, mit dem sich autonomes Verhalten im Satelliten realisieren lässt. Es kann an unterschiedliche Satellitenmissionen angepasst werden. Ferner deckt es verschiedene Aspekte des autonomen Satellitenbetriebs, angefangen bei der generellen Entscheidungsfindung der Tätigkeiten, über die zeitliche Ablaufplanung unter Einbeziehung von Randbedingungen (z.B. Ressourcen) bis hin zur eigentlichen Ausführung, d.h. Kommandierung, ab. Das Planungssystem kommt als Anwendung in ASAP, einer autonomen Sensorplattform, zum Einsatz. Es ist ein optisches System und dient der Detektion von kurzzeitigen Phänomenen und Ereignissen in der Erdatmosphäre. Die Forschungsarbeiten an dem autonomen Planungssystem, an ASAP sowie an anderen zu diesen in Bezug stehenden Systemen wurden an der Professur für Raumfahrttechnik des Lehrstuhls Informatik VIII der Julius-Maximilians-Universität Würzburg durchgeführt. N2 - Satellite operation will change thoroughly in future. So far the currently performed conventional approach of controlling satellites is hitting its limitation by todays application. This is due to the fact that activities of the satellite are planned and controlled exclusively by ground infrastructure. In the worst case this circumstance prevents the exploitation of potential but so far unused opportunities. Thus the yield of satellites, may it be in the form of scientific research data or the commercialization of satellite services, is not optimized. After all the cause of this problem can be tracked back to one crucial matter: Conventional satellites are not able to alter their behaviour, i.e. the order of their actions, themselves. Instead schedules are created by ground staff – mainly operators - utilizing specialized planning software. The output is then transformed into command sequences and uploaded to the dedicated satellite via ground stations. On-board the commands are solely checked, interpreted and strictly executed. The flow is linear. Situational changes, like in the code execution of software programs via control constructs, e.g. loops and branches, are typically not present. Thus the operator is the only instance which is able to change the behaviour of the satellite via command upload. Therefore a direct radio link between satellite and ground station is required. Reaction times are hereby restricted. In the best case, means when the satellite is inside the area of effect, the limitations are to a few seconds. Outside the contact window, the time bound may increase from minutes to hours. The exact timing are dependant from the orbit of the satellite and its position on it. The signal flow of the radio links adds additional reaction time from a few seconds in near earth up to some minutes in interplanetary space due to the vast distances. In sum the best achievable ground based reaction time lies in the area of some seconds. This restriction is a severe handicap for novel satellite missions with focus on non-deterministic and short-time phenomena, e.g. lightning and meteor entries into Earth atmosphere. The long reaction times of conventional satellite operations prevent the realization of such missions. This is due to the fact that delayed reactions take place after the event to observe has finished. This dissertation shows a possibility to solve the problem caused by long reaction times. Autonomy lies in the centre of the main approach. The key is to augment the satellite with the ability to alter its behaviour, i.e. the sequence of its actions, and to deliberate about it. Thus, the direct reaction dependency of the satellite from operators will be lifted. In principle the satellite will be able to command itself. The herein idea of autonomy is based on research work, which provides the context for design and implementation. The output is an autonomous planning system. It’s a software system which enables a satellite to behave autonomously and can be adapted to different types of satellite missions. Additionally, it covers different aspects of autonomous satellite operation, starting with general decision making of activities, going over to time scheduling inclusive constraint consideration, e.g. resources, and finishing at last with the actual execution, i.e. commanding. The autonomous planning system runs as one application of ASAP, an autonomous sensor platform. It is an optical system with the purpose to detect short-time phenomena and events in Earth atmosphere. The research work for the autonomous planning system, for ASAP and for other related systems has been executed at the professorship for space technology which is part of the department for computer science VIII at the Julius-Maximilians-Universität Würzburg. KW - Planungssystem KW - Autonomie KW - Satellit KW - Entscheidungsfindung KW - Ablaufplanung KW - Planausführung KW - System KW - Missionsbetrieb KW - decission finding KW - scheduling KW - plan execution KW - system KW - mission operation Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-163569 ER - TY - JOUR A1 - Schrewe, L. A1 - Lill, C. M. A1 - Liu, T. A1 - Salmen, A. A1 - Gerdes, L. A. A1 - Guillot-Noel, L. A1 - Akkad, D. A. A1 - Blaschke, P. A1 - Graetz, C. A1 - Hoffjan, S. A1 - Kroner, A. A1 - Demir, S. A1 - Böhme, A. A1 - Rieckmann, P. A1 - El Ali, A. A1 - Hagemann, N. A1 - Hermann, D. M. A1 - Cournu-Rebeix, I. A1 - Zipp, F. A1 - Kümpfel, T. A1 - Buttmann, M. A1 - Zettl, U. K. A1 - Fontaine, B. A1 - Bertram, L. A1 - Gold, R. A1 - Chan, A. T1 - Investigation of sex-specific effects of apolipoprotein E on severity of EAE and MS JF - Journal of Neuroinflammation N2 - Background: Despite pleiotropic immunomodulatory effects of apolipoprotein E (apoE) in vitro, its effects on the clinical course of experimental autoimmune encephalomyelitis (EAE) and multiple sclerosis (MS) are still controversial. As sex hormones modify immunomodulatory apoE functions, they may explain contentious findings. This study aimed to investigate sex-specific effects of apoE on disease course of EAE and MS. Methods: MOG\(_{35-55}\) induced EAE in female and male apoE-deficient mice was assessed clinically and histopathologically. apoE expression was investigated by qPCR. The association of the MS severity score (MSSS) and APOE rs429358 and rs7412 was assessed across 3237 MS patients using linear regression analyses. Results: EAE disease course was slightly attenuated in male apoE-deficient (apoE\(^{-/-}\)) mice compared to wildtype mice (cumulative median score: apoE\(^{-/-}\) = 2 [IQR 0.0-4.5]; wildtype = 4 [IQR 1.0-5.0]; n = 10 each group, p = 0.0002). In contrast, EAE was more severe in female apoE\(^{-/-}\) mice compared to wildtype mice (cumulative median score: apoE\(^{-/-}\) = 3 [IQR 2.0-4.5]; wildtype = 3 [IQR 0.0-4.0]; n = 10, p = 0.003). In wildtype animals, apoE expression during the chronic EAE phase was increased in both females and males (in comparison to naive animals; p < 0.001). However, in MS, we did not observe a significant association between MSSS and rs429358 or rs7412, neither in the overall analyses nor upon stratification for sex. Conclusions: apoE exerts moderate sex-specific effects on EAE severity. However, the results in the apoE knock-out model are not comparable to effects of polymorphic variants in the human APOE gene, thus pinpointing the challenge of translating findings from the EAE model to the human disease. KW - immune KW - apoE KW - gender KW - inflammation KW - association studies in genetics KW - apoe KW - CNS disease KW - system KW - multiple sclerosis KW - MSSS KW - experimental autoimmune encephalomyelitis KW - disease severity KW - cognitive function KW - Alzheimer disease Y1 - 2015 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-136252 VL - 12 IS - 234 ER - TY - JOUR A1 - Li, Gang A1 - Yan, Binghai A1 - Thomale, Ronny A1 - Hanke, Werner T1 - Topological nature and the multiple Dirac cones hidden in Bismuth high-Tc superconductors JF - Scientific Reports N2 - Recent theoretical studies employing density-functional theory have predicted BaBiO\(_{3}\) (when doped with electrons) and YBiO\(_{3}\) to become a topological insulator (TI) with a large topological gap (~0.7 eV). This, together with the natural stability against surface oxidation, makes the Bismuth-Oxide family of special interest for possible applications in quantum information and spintronics. The central question, we study here, is whether the hole-doped Bismuth Oxides, i.e. Ba\(_{1-X}\)K\(_{X}\)BiO\(_{3}\) and BaPb\(_{1-X}\)Bi\(_{X}\)O\(_{3}\), which are "high-Tc" bulk superconducting near 30 K, additionally display in the further vicinity of their Fermi energy E\(_{F}\) a topological gap with a Dirac-type of topological surface state. Our electronic structure calculations predict the K-doped family to emerge as a TI, with a topological gap above E\(_{F}\). Thus, these compounds can become superconductors with hole-doping and potential TIs with additional electron doping. Furthermore, we predict the Bismuth-Oxide family to contain an additional Dirac cone below E\(_{F}\) for further hole doping, which manifests these systems to be candidates for both electron-and hole-doped topological insulators. KW - localized wannier functions KW - total energy calculations KW - phase transitions KW - insulator KW - BaPb\(_{1-X}\)Bi\(_{X}\)O\(_{3}\) KW - temperature KW - system KW - wave basis set KW - initio molecular dynamics KW - diffraction Y1 - 2015 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-148569 VL - 5 IS - 10435 ER - TY - JOUR A1 - Koch, Oliver A1 - Cappel, Daniel A1 - Nocker, Monika A1 - Jäger, Timo A1 - Flohé, Leopold A1 - Sotriffer, Christoph A. A1 - Selzer, Paul M. T1 - Molecular Dynamics Reveal Binding Mode of Glutathionylspermidine by Trypanothione Synthetase JF - PLoS ONE N2 - The trypanothione synthetase (TryS) catalyses the two-step biosynthesis of trypanothione from spermidine and glutathione and is an attractive new drug target for the development of trypanocidal and antileishmanial drugs, especially since the structural information of TryS from Leishmania major has become available. Unfortunately, the TryS structure was solved without any of the substrates and lacks loop regions that are mechanistically important. This contribution describes docking and molecular dynamics simulations that led to further insights into trypanothione biosynthesis and, in particular, explains the binding modes of substrates for the second catalytic step. The structural model essentially confirm previously proposed binding sites for glutathione, ATP and two \(Mg^{2+}\) ions, which appear identical for both catalytic steps. The analysis of an unsolved loop region near the proposed spermidine binding site revealed a new pocket that was demonstrated to bind glutathionylspermidine in an inverted orientation. For the second step of trypanothione synthesis glutathionylspermidine is bound in a way that preferentially allows \(N^1\)-glutathionylation of \(N^8\)-glutathionylspermidine, classifying \(N^8\)-glutathionylspermidine as the favoured substrate. By inhibitor docking, the binding site for \(N^8\)-glutathionylspermidine was characterised as druggable. KW - purification KW - crithidia fasciulata KW - trypanosoma cruzi KW - RESP model KW - biosynthesis KW - chemotherapy KW - metabolism KW - brucei KW - system KW - leishmaniasis Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-131070 VL - 8 IS - 2 ER - TY - JOUR A1 - Hopfmann, C. A1 - Albert, F. A1 - Schneider, C. A1 - Höfling, S. A1 - Kamp, M. A1 - Forchel, A. A1 - Kanter, I. A1 - Reizenstein, S. T1 - Nonlinear emission characteristics of quantum dot-micropillar lasers in the presence of polarized optical feedback JF - New Journal of Physics N2 - We report on electrically pumped quantum dot-microlasers in the presence of polarized self-feedback. The high-\(\beta\) microlasers show two orthogonal, linearly polarized emission modes which are coupled via the common gain medium. This coupling is explained in terms of gain competition between the two lasing modes and leads to distinct differences in their input-output characteristics. By applying polarized self-feedback via an external mirror, we are able to control the laser characteristics of the emission modes in terms of the output power, the coherence time and the photon statistics. We find that linearly polarized self-feedback stabilizes the lasing of a given mode, while cross-polarized feedback between the two modes reduces strongly the intensity of the other emission mode showing particular high-intensity fluctuations and even super-thermal values of the photon autocorrelation function \(g^{(2)} (\tau)\) at zero delay. Measurements of \(g^{(2)} (\tau)\) under external feedback also allow us to detect revival peaks associated with the round trip time of the external cavity. Analyzing the damping and shape of the \(g^{(2)} (\tau)\) revival peaks by a phenomenological model provides us insight into the underlying physics such as the effective exciton lifetime and gain characteristics of the quantum dots in the active region of these microlasers. KW - semiconductor lasers KW - coherence KW - system KW - gain Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-123127 SN - 1367-2630 VL - 15 IS - 025030 ER -