TY - JOUR A1 - Dietschreit, Johannes C. B. A1 - Wagner, Annika A1 - Le, T. Anh A1 - Klein, Philipp A1 - Schindelin, Hermann A1 - Opatz, Till A1 - Engels, Bernd A1 - Hellmich, Ute A. A1 - Ochsenfeld, Christian T1 - Predicting \(^{19}\)F NMR Chemical Shifts: A Combined Computational and Experimental Study of a Trypanosomal Oxidoreductase–Inhibitor Complex JF - Angewandte Chemie International Edition N2 - The absence of fluorine from most biomolecules renders it an excellent probe for NMR spectroscopy to monitor inhibitor–protein interactions. However, predicting the binding mode of a fluorinated ligand from a chemical shift (or vice versa) has been challenging due to the high electron density of the fluorine atom. Nonetheless, reliable \(^{19}\)F chemical‐shift predictions to deduce ligand‐binding modes hold great potential for in silico drug design. Herein, we present a systematic QM/MM study to predict the \(^{19}\)F NMR chemical shifts of a covalently bound fluorinated inhibitor to the essential oxidoreductase tryparedoxin (Tpx) from African trypanosomes, the causative agent of African sleeping sickness. We include many protein–inhibitor conformations as well as monomeric and dimeric inhibitor–protein complexes, thus rendering it the largest computational study on chemical shifts of \(^{19}\)F nuclei in a biological context to date. Our predicted shifts agree well with those obtained experimentally and pave the way for future work in this area. KW - African sleeping sickness KW - covalent inhibitors KW - NMR spectroscopy KW - quantum chemistry KW - structural biology Y1 - 2020 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-214879 VL - 59 IS - 31 SP - 12669 EP - 12673 ER - TY - JOUR A1 - Hermann, Alexander A1 - Fantuzzi, Felipe A1 - Arrowsmith, Merle A1 - Zorn, Theresa A1 - Krummenacher, Ivo A1 - Ritschel, Benedikt A1 - Radacki, Krzysztof A1 - Engels, Bernd A1 - Braunschweig, Holger T1 - Oxidation, Coordination, and Nickel-Mediated Deconstruction of a Highly Electron-Rich Diboron Analogue of 1,3,5-Hexatriene JF - Angewandte Chemie, International Edition N2 - The reductive coupling of an N-heterocyclic carbene (NHC) stabilized (dibromo)vinylborane yields a 1,2-divinyl- diborene, which, although isoelectronic to a 1,3,5-triene, displays no extended p conjugation because of twisting of the C\(_2\)B\(_2\)C\(_2\) chain. While this divinyldiborene coordinates to copper(I) and platinum(0) in an η\(^2\)-B\(_2\) and η\(^4\)-C\(_2\)B\(_2\) fashion, respectively, it undergoes a complex rearrangement to an η\(^4\)-1,3-diborete upon complexation with nickel(0). KW - boron KW - diborenes KW - carbenes KW - conjugation KW - density-functional calculations KW - rearrangements KW - structure elucidation Y1 - 2020 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-240652 VL - 59 IS - 36 ER - TY - JOUR A1 - Klein, Philipp A1 - Johe, Patrick A1 - Wagner, Annika A1 - Jung, Sascha A1 - Kühlborn, Jonas A1 - Barthels, Fabian A1 - Tenzer, Stefan A1 - Distler, Ute A1 - Waigel, Waldemar A1 - Engels, Bernd A1 - Hellmich, Ute A. A1 - Opatz, Till A1 - Schirmeister, Tanja T1 - New cysteine protease inhibitors: electrophilic (het)arenes and unexpected prodrug identification for the Trypanosoma protease rhodesain JF - Molecules N2 - Electrophilic (het)arenes can undergo reactions with nucleophiles yielding π- or Meisenheimer (σ-) complexes or the products of the S\(_N\)Ar addition/elimination reactions. Such building blocks have only rarely been employed for the design of enzyme inhibitors. Herein, we demonstrate the combination of a peptidic recognition sequence with such electrophilic (het)arenes to generate highly active inhibitors of disease-relevant proteases. We further elucidate an unexpected mode of action for the trypanosomal protease rhodesain using NMR spectroscopy and mass spectrometry, enzyme kinetics and various types of simulations. After hydrolysis of an ester function in the recognition sequence of a weakly active prodrug inhibitor, the liberated carboxylic acid represents a highly potent inhibitor of rhodesain (K\(_i\) = 4.0 nM). The simulations indicate that, after the cleavage of the ester, the carboxylic acid leaves the active site and re-binds to the enzyme in an orientation that allows the formation of a very stable π-complex between the catalytic dyad (Cys-25/His-162) of rhodesain and the electrophilic aromatic moiety. The reversible inhibition mode results because the S\(_N\)Ar reaction, which is found in an alkaline solvent containing a low molecular weight thiol, is hindered within the enzyme due to the presence of the positively charged imidazolium ring of His-162. Comparisons between measured and calculated NMR shifts support this interpretation KW - cysteine protease KW - rhodesain KW - electrophilic (het)arene KW - nucleophilic aromatic substitution KW - Meisenheimer complex KW - π-complex KW - prodrug Y1 - 2020 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-203380 SN - 1420-3049 VL - 25 IS - 6 ER - TY - JOUR A1 - Klein, Philipp A1 - Barthels, Fabian A1 - Johe, Patrick A1 - Wagner, Annika A1 - Tenzer, Stefan A1 - Distler, Ute A1 - Le, Thien Anh A1 - Schmid, Paul A1 - Engel, Volker A1 - Engels, Bernd A1 - Hellmich, Ute A. A1 - Opatz, Till A1 - Schirmeister, Tanja T1 - Naphthoquinones as covalent reversible inhibitors of cysteine proteases — studies on inhibition mechanism and kinetics JF - Molecules N2 - The facile synthesis and detailed investigation of a class of highly potent protease inhibitors based on 1,4-naphthoquinones with a dipeptidic recognition motif (HN-l-Phe-l-Leu-OR) in the 2-position and an electron-withdrawing group (EWG) in the 3-position is presented. One of the compound representatives, namely the acid with EWG = CN and with R = H proved to be a highly potent rhodesain inhibitor with nanomolar affinity. The respective benzyl ester (R = Bn) was found to be hydrolyzed by the target enzyme itself yielding the free acid. Detailed kinetic and mass spectrometry studies revealed a reversible covalent binding mode. Theoretical calculations with different density functionals (DFT) as well as wavefunction-based approaches were performed to elucidate the mode of action. KW - protease KW - rhodesain KW - covalent reversible inhibition KW - 1,4-naphthoquinone KW - nucleophilic addition KW - prodrug Y1 - 2020 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-203791 SN - 1420-3049 VL - 25 IS - 9 ER - TY - JOUR A1 - Mukhopadhyay, Deb Pratim A1 - Schleier, Domenik A1 - Wirsing, Sara A1 - Ramler, Jaqueline A1 - Kaiser, Dustin A1 - Reusch, Engelbert A1 - Hemberger, Patrick A1 - Preitschopf, Tobias A1 - Krummenacher, Ivo A1 - Engels, Bernd A1 - Fischer, Ingo A1 - Lichtenberg, Crispin T1 - Methylbismuth: an organometallic bismuthinidene biradical JF - Chemical Science N2 - We report the generation, spectroscopic characterization, and computational analysis of the first free (non-stabilized) organometallic bismuthinidene, BiMe. The title compound was generated in situ from BiMe\(_3\) by controlled homolytic Bi–C bond cleavage in the gas phase. Its electronic structure was characterized by a combination of photoion mass-selected threshold photoelectron spectroscopy and DFT as well as multi-reference computations. A triplet ground state was identified and an ionization energy (IE) of 7.88 eV was experimentally determined. Methyl abstraction from BiMe\(_3\) to give [BiMe(_2\)]• is a key step in the generation of BiMe. We reaveal a bond dissociation energy of 210 ± 7 kJ mol\(^{−1}\), which is substantially higher than the previously accepted value. Nevertheless, the homolytic cleavage of Me–BiMe\(_2\) bonds could be achieved at moderate temperatures (60–120 °C) in the condensed phase, suggesting that [BiMe\(_2\)]• and BiMe are accessible as reactive intermediates under these conditions. KW - methylbismuth KW - Photoelektronenspektroskopie Y1 - 2020 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-251657 UR - https://pubs.rsc.org/en/content/articlelanding/2020/SC/D0SC02410D VL - 11 IS - 29 ER - TY - JOUR A1 - Saalfrank, Christian A1 - Fantuzzi, Felipe A1 - Kupfer, Thomas A1 - Ritschel, Benedikt A1 - Hammond, Kai A1 - Krummenacher, Ivo A1 - Bertermann, Rüdiger A1 - Wirthensohn, Raphael A1 - Finze, Maik A1 - Schmid, Paul A1 - Engel, Volker A1 - Engels, Bernd A1 - Braunschweig, Holger T1 - cAAC‐Stabilized 9,10‐diboraanthracenes—Acenes with Open‐Shell Singlet Biradical Ground States JF - Angewandte Chemie International Edition N2 - Narrow HOMO–LUMO gaps and high charge‐carrier mobilities make larger acenes potentially high‐efficient materials for organic electronic applications. The performance of such molecules was shown to significantly increase with increasing number of fused benzene rings. Bulk quantities, however, can only be obtained reliably for acenes up to heptacene. Theoretically, (oligo)acenes and (poly)acenes are predicted to have open‐shell singlet biradical and polyradical ground states, respectively, for which experimental evidence is still scarce. We have now been able to dramatically lower the HOMO–LUMO gap of acenes without the necessity of unfavorable elongation of their conjugated π system, by incorporating two boron atoms into the anthracene skeleton. Stabilizing the boron centers with cyclic (alkyl)(amino)carbenes gives neutral 9,10‐diboraanthracenes, which are shown to feature disjointed, open‐shell singlet biradical ground states. KW - acenes KW - biradicals KW - bond Activation KW - boron KW - heterocycles Y1 - 2020 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-217795 VL - 59 IS - 43 SP - 19338 EP - 19343 ER - TY - JOUR A1 - Saalfrank, Christian A1 - Fantuzzi, Felipe A1 - Kupfer, Thomas A1 - Ritschel, Benedikt A1 - Hammond, Kai A1 - Krummenacher, Ivo A1 - Bertermann, Rüdiger A1 - Wirthensohn, Raphael A1 - Finze, Maik A1 - Schmid, Paul A1 - Engel, Volker A1 - Engels, Bernd A1 - Braunschweig, Holger T1 - cAAC‐stabilisierte 9,10‐Diboraanthracene – offenschalige Singulettbiradikale JF - Angewandte Chemie N2 - Geringe HOMO-LUMO-Abstände und eine hohe Ladungsträgermobilität prädestinieren die höheren Acene für Anwendungen im Bereich der Organoelektronik. Die Leistungsfähigkeit derartiger Verbindungen steigt hierbei dramatisch mit der Anzahl anellierter Benzolringe. Größere Acenmengen sind synthetisch bisher jedoch nur für Acene bis Heptacen verlässlich zugänglich. Theoretischen Studien zufolge besitzen (Oligo)acene offenschalige Singulettbiradikal- und (Poly)acene polyradikalische Grundzustände. Eindeutige experimentelle Belege für diese Vorhersagen sind hingegen äußerst selten. Durch den Einbau von zwei Boratomen in das Anthracengrundgerüst konnten wir den HOMO-LUMO-Abstand von Acenen dramatisch verringern und zwar ohne die Notwendigkeit einer Ausweitung des konjugierten π-Systems. Stabilisierung der Borzentren durch cyclische (Alkyl)(amino)carbene lieferte hierbei neutrale 9,10-Diboraanthracene mit disjunkten, offenschaligen Singulettbiradikal-Grundzuständen. KW - Acene KW - Bindungsaktivierung KW - Biradikale KW - Bor KW - Heterocyclen Y1 - 2020 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-218582 VL - 132 IS - 43 SP - 19502 EP - 19507 ER - TY - JOUR A1 - Brunecker, Carina A1 - Müssig, Jonas H. A1 - Arrowsmith, Merle A1 - Fantuzzi, Felipe A1 - Stoy, Andreas A1 - Böhnke, Julian A1 - Hofmann, Alexander A1 - Bertermann, Rüdiger A1 - Engels, Bernd A1 - Braunschweig, Holger T1 - Boranediyl‐ and Diborane(4)‐1,2‐diyl‐Bridged Platinum A‐Frame Complexes JF - Chemistry – A European Journal N2 - Diplatinum A‐frame complexes with a bridging (di)boron unit in the apex position were synthesized in a single step by the double oxidative addition of dihalo(di)borane precursors at a bis(diphosphine)‐bridged Pt\(^{0}\)\(_{2}\) complex. While structurally analogous to well‐known μ‐borylene complexes, in which delocalized dative three‐center‐two‐electron M‐B‐M bonding prevails, theoretical investigations into the nature of Pt−B bonding in these A‐frame complexes show them to be rare dimetalla(di)boranes displaying two electron‐sharing Pt−B σ‐bonds. This is experimentally reflected in the low kinetic stability of these compounds, which are prone to loss of the (di)boron bridgehead unit. KW - boron KW - bonding KW - EDA-NOCV KW - oxidative addition KW - platinum Y1 - 2020 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-214707 VL - 26 IS - 39 SP - 8518 EP - 8523 ER -