TY - THES A1 - Hillebrand, Frank T1 - Der Einfluss des PI3-Kinase Signalwegs auf die Regulation des alternativen HIV-1 prä-mRNA Spleißens T1 - The influence of the PI3-kinase pathway on the regulation of of alternative HIV-1 pre-mRNA splicing N2 - In der vorliegenden Arbeit wurden ausgehend von HIV-1 basierten Minigenkonstrukten und der proviralen NL4-3 DNA die Einflüsse der PI3K Signalwegmodulation auf das alternative Spleißen der HIV-1 prä-mRNA sowie auf die Virus Replikation untersucht. Mittels RT-PCR Analysen konnte gezeigt werden, dass die PI3K Inhibition im Falle der HIV-1 basierten Minigenkonstrukte in einer erhöhten Abundanz ungespleißter bzw. intronhaltiger mRNAs resultierte, während im Kontext des Virus die Induktion alternativer Tat Transkriptvarianten nachgewiesen werden konnte. Als Folge der Inhibition des PI3K Signalwegs kam es zu einem vermehrten Einschluss der HIV-1 Leader Exone2/2b und 3. Da der Einschluss dieser Exone durch die hnRNP A/B- und F/H-abhängigen Silencer Elemente ESSV und GI2-1 negativ reguliert wird, wurde vermutet, dass die PI3K Inhibition mit der Funktionalität dieser spleißregulatorischen Aktivität interferiert. Unterstützt wurde diese Hypothese durch Replikationsexperimente mit ESSV und GI2-1 Mutanten in Gegenwart und Abwesenheit des PI3K-Inhibitors. Zusätzlich wurde auch der Einfluss des Inhibitors unter Überexpressionsbedingungen von hnRNP H auf das alternative HIV-1 Spleißen analysiert. In dieser Arbeit konnte ebenfalls gezeigt werden, dass die PI3K Inhibition ein verändertes hnRNP H Spleißmuster bedingt sowie die SR-Protein Phosphorylierung und Expression beeinflusst. Des Weiteren war es im Verlauf der vorliegenden Arbeit möglich, eine Interferenz der PI3K Modulation mit der Virus Replikation nachzuweisen. Die Überexpression der aktivierten Akt-Kinase lies hier nur eine sehr geringe Virus Produktion zu während die PI3K Inhibition diese auf ca. die Hälfte reduzierte. Weiterführende Experimente zeigten, dass die Überexpression der aktivierten Akt-Kinase den nuklearen Export Rev-abhängiger HIV-1 mRNAs zu blockieren scheint. Darüber hinaus beeinflusste die PI3K Inhibition neben dem alternativen HIV-1 Spleißen auch die virale Transkription sowie die zelluläre Translation. Zusammen könnten diese Effekte die reduzierte virale Replikation erklären. Der PI3K Signalweg spielt somit eine zentrale Rolle bei dem alternativen HIV-1 Spleißen und der viralen Replikation und bietet so die Möglichkeit der Entwicklung neuer Ansätze einer antiviralen Therapie.   N2 - In this thesis outgoing from HIV-1 based minigenes and the proviral NL4-3 DNA the influences of the PI3K signaling modulation on the alternative HIV-1 pre-mRNA splicing and also the viral replication were investigated. By performing RT-PCR analysis it could be shown that in the case of the minigene experiments the PI3K inhibition displayed an increased amount of unspliced or intron containing mRNAs, while the production of alternative Tat variants was demonstrated in the context of the virus. As a result of the PI3K inhibition an increased inclusion of the HIV-1 leader exons2/2b and 3 was observed. Because the inclusion of these exons is negatively regulated by the hnRNP H/F- and hnRNP A/B-dependent silencere elements ESSV and GI2-1, it was suggested that the PI3K inhibition interferes with the functionality of this splicing regulatory activity. Replication experiments either with GI2-1 or ESSV mutants in the presence or absence of the PI3K-Inhibitior supported this hypothesis. In addition, the influence of the inhibitor on the alternative HIV-1 splicing was analyzed under hnRNP H overexpression conditions. Furthermore, it was shown that the hnRNP H splicing pattern as well as the SR-protein phosphorylation and expression were altered as a consequence of the PI3K inhibition. During this thesis an interference of the PI3K modulation with the viral replication was also shown. The overexpression of the activated Akt kinase nearly prevented viral production while the PI3K inhibition reduced viral production by half. In further experiments it was shown that the overexpression of the activated Akt kinase seems to block the nuclear export of Rev-dependent HIV-1 mRNAs. In addition, beside the effect on the viral splicing pattern the PI3K inhibition also showed an influence on the viral transcription and the cellular translation suggesting that the sum of all these effects could contribute to the reduced virus production. These findings demonstrate that the PI3K signaling pathway has indeed a central influence on the alternative HIV-1 splicing as well as on the viral replication and may offer a new approach for antiviral therapy. KW - RNS-Spleißen KW - HIV KW - Phosphatidylinositolkinase KW - PI3K/Akt pathway KW - HIV-1 KW - alternative splicing KW - Phosphatidylinositol-3-Kinase KW - PI3K/Akt Signalweg KW - alternatives Spleißen Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-76914 ER - TY - JOUR A1 - Meuche, Ivonne A1 - Brusa, Oscar A1 - Linsenmair, K. Eduard A1 - Keller, Alexander A1 - Pröhl, Heike T1 - Only distance matters - non-choosy females in a poison frog population JF - Frontiers in Zoology N2 - Background: Females have often been shown to exhibit preferences for certain male traits. However, little is known about behavioural rules females use when searching for mates in their natural habitat. We investigated mate sampling tactics and related costs in the territorial strawberry poison frog (Oophaga pumilio) possessing a lek-like mating system, where both sequential and simultaneous sampling might occur. We continuously monitored the sampling pattern and behaviour of females during the complete period between two successive matings. Results: We found no evidence that females compared males by visiting them. Instead females mated with the closest calling male irrespective of his acoustic and physical traits, and territory size. Playback experiments in the natural home ranges of receptive females revealed that tested females preferred the nearest speaker and did not discriminate between low and high call rates or dominant frequencies. Conclusions: Our results suggest that females of O. pumilio prefer the closest calling male in the studied population. We hypothesize that the sampling tactic in this population is affected by 1) a strongly female biased sex ratio and 2) a low variance in traits of available males due to strong male-male competition, preventing low quality males from defending a territory and mating. KW - operational sex ratio KW - sequential mate choice KW - gray tree frogs KW - treefrogs hyla-gratiosa KW - male mating success KW - Bocas-del-Toro KW - dendrobates pumilio KW - oophaga pumilio KW - pied flycatchers KW - sampling behavior Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-122617 SN - 1742-9994 VL - 10 IS - 29 ER - TY - JOUR A1 - Menzel, Florian A1 - Blüthgen, Nico A1 - Tolasch, Till A1 - Conrad, Jürgen A1 - Beifuss, Uwe A1 - Beuerle, Till A1 - Schmitt, Thomas T1 - Crematoenones - a novel substance class exhibited by ants functions as appeasement signal JF - Frontiers in Zoology N2 - Background: Parasitic, commensalistic, and mutualistic guests in social insect colonies often circumvent their hosts' nestmate recognition system to be accepted. These tolerance strategies include chemical mimicry and chemical insignificance. While tolerance strategies have been studied intensively in social parasites, little is known about these mechanisms in non-parasitic interactions. Here, we describe a strategy used in a parabiotic association, i.e. two mutualistic ant species that regularly share a common nest although they have overlapping food niches. One of them, Crematogaster modiglianii, produces an array of cuticular compounds which represent a substance class undescribed in nature so far. They occur in high abundances, which suggests an important function in the ant's association with its partner Camponotus rufifemur. Results: We elucidated the structure of one of the main compounds from cuticular extracts using gas chromatography, mass spectrometry, chemical derivatizations and nuclear magnetic resonance spectroscopy (NMR). The compound consists of two fused six-membered rings with two alkyl groups, one of which carries a keto functionality. To our knowledge, this is the first report on the identification of this substance class in nature. We suggest naming the compound crematoenone. In behavioural assays, crematoenones reduced interspecific aggression. Camponotus showed less aggression to allospecific cuticular hydrocarbons when combined with crematoenones. Thus, they function as appeasement substances. However, although the crematoenone composition was highly colony-specific, interspecific recognition was mediated by cuticular hydrocarbons, and not by crematoenones. Conclusions: Crematenones enable Crematogaster to evade Camponotus aggression, and thus reduce potential costs from competition with Camponotus. Hence, they seem to be a key factor in the parabiosis, and help Crematogaster to gain a net benefit from the association and thus maintain a mutualistic association over evolutionary time. To our knowledge, putative appeasement substances have been reported only once so far, and never between non-parasitic species. Since most organisms associated with social insects need to overcome their nestmate recognition system, we hypothesize that appeasement substances might play an important role in the evolution and maintenance of other mutualistic associations as well, by allowing organisms to reduce costs from antagonistic behaviour of other species. KW - cuticular hydrocarbons KW - appeasement substance KW - bees KW - ecology KW - parasitism KW - alkyloctahydronaphthalene KW - usurpation KW - venom KW - pheromone KW - crematogaster KW - parabiotic ants KW - Dufours gland KW - polyergus rufescens KW - formicidae KW - interspecific aggression KW - nestmate recognition cues KW - parabiotic association Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-122595 SN - 1742-9994 VL - 10 IS - 32 ER - TY - JOUR A1 - Dietz, Mariana S. A1 - Hasse, Daniel A1 - Ferraris, Davide M. A1 - Göhler, Antonia A1 - Niemann, Hartmut H. A1 - Heilemann, Mike T1 - Single-molecule photobleaching reveals increased MET receptor dimerization upon ligand binding in intact cells JF - BMC Biophysics N2 - Background: The human receptor tyrosine kinase MET and its ligand hepatocyte growth factor/scatter factor are essential during embryonic development and play an important role during cancer metastasis and tissue regeneration. In addition, it was found that MET is also relevant for infectious diseases and is the target of different bacteria, amongst them Listeria monocytogenes that induces bacterial uptake through the surface protein internalin B. Binding of ligand to the MET receptor is proposed to lead to receptor dimerization. However, it is also discussed whether preformed MET dimers exist on the cell membrane. Results: To address these issues we used single-molecule fluorescence microscopy techniques. Our photobleaching experiments show that MET exists in dimers on the membrane of cells in the absence of ligand and that the proportion of MET dimers increases significantly upon ligand binding. Conclusions: Our results indicate that partially preformed MET dimers may play a role in ligand binding or MET signaling. The addition of the bacterial ligand internalin B leads to an increase of MET dimers which is in agreement with the model of ligand-induced dimerization of receptor tyrosine kinases. KW - single-molecule photobleaching KW - fluorescence correlation spectroscopy KW - fluorescence KW - EGF receptor KW - rat hepatocytes KW - structural insights KW - Scatter factor KW - SEMA domain KW - hepatocyte-growth-factor KW - invasion protein-INLB KW - listeria-monocytogenes KW - tyrosine kinase KW - living cells KW - dimerization KW - MET receptor KW - Signal transduction Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-121835 SN - 2046-1682 VL - 6 IS - 6 ER - TY - JOUR A1 - Rybalka, Nataliya A1 - Wolf, Matthias A1 - Andersen, Robert A1 - Friedl, Thomas T1 - Congruence of chloroplast- and nuclear-encoded DNA sequence variations used to assess species boundaries in the soil microalga Heterococcus (Stramenopiles, Xanthophyceae) JF - BMC Evolutionary Biology N2 - Background: Heterococcus is a microalgal genus of Xanthophyceae (Stramenopiles) that is common and widespread in soils, especially from cold regions. Species are characterized by extensively branched filaments produced when grown on agarized culture medium. Despite the large number of species described exclusively using light microscopic morphology, the assessment of species diversity is hampered by extensive morphological plasticity. Results: Two independent types of molecular data, the chloroplast-encoded psbA/rbcL spacer complemented by rbcL gene and the internal transcribed spacer 2 of the nuclear rDNA cistron (ITS2), congruently recovered a robust phylogenetic structure. With ITS2 considerable sequence and secondary structure divergence existed among the eight species, but a combined sequence and secondary structure phylogenetic analysis confined to helix II of ITS2 corroborated relationships as inferred from the rbcL gene phylogeny. Intra-genomic divergence of ITS2 sequences was revealed in many strains. The 'monophyletic species concept', appropriate for microalgae without known sexual reproduction, revealed eight different species. Species boundaries established using the molecular-based monophyletic species concept were more conservative than the traditional morphological species concept. Within a species, almost identical chloroplast marker sequences (genotypes) were repeatedly recovered from strains of different origins. At least two species had widespread geographical distributions; however, within a given species, genotypes recovered from Antarctic strains were distinct from those in temperate habitats. Furthermore, the sequence diversity may correspond to adaptation to different types of habitats or climates. Conclusions: We established a method and a reference data base for the unambiguous identification of species of the common soil microalgal genus Heterococcus which uses DNA sequence variation in markers from plastid and nuclear genomes. The molecular data were more reliable and more conservative than morphological data. KW - xanthophyceae KW - psbA/rbcL spacer KW - ITS2 KW - tool KW - RBCL KW - alignment KW - evolution KW - chlorophyta KW - RNA secondary structure KW - terrestrial habitats KW - phylogenetic trees KW - mixed models KW - green algae KW - heterococcus KW - systematics KW - molecular phylogeny KW - species concept Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-121848 SN - 1471-2148 VL - 13 IS - 39 ER - TY - JOUR A1 - Cornelius, Christine A1 - Leingärtner, Annette A1 - Hoiss, Bernhard A1 - Krauss, Jochen A1 - Steffan-Dewenter, Ingolf A1 - Menzel, Annette T1 - Phenological response of grassland species to manipulative snowmelt and drought along an altitudinal gradient JF - Journal of Experimental Botany N2 - Plant communities in the European Alps are assumed to be highly affected by climate change, as the temperature rise in this region is above the global average. It is predicted that higher temperatures will lead to advanced snowmelt dates and that the number of extreme weather events will increase. The aims of this study were to determine the impacts of extreme climatic events on flower phenology and to assess whether those impacts differed between lower and higher altitudes. In 2010, an experiment simulating advanced and delayed snowmelt as well as a drought event was conducted along an altitudinal transect approximately every 250 m (600–2000 m above sea level) in the Berchtesgaden National Park, Germany. The study showed that flower phenology was strongly affected by altitude; however, there were few effects of the manipulative treatments on flowering. The effects of advanced snowmelt were significantly greater at higher than at lower sites, but no significant difference was found between both altitudinal bands for the other treatments. The response of flower phenology to temperature declined through the season and the length of flowering duration was not significantly influenced by treatments. The stronger effect of advanced snowmelt at higher altitudes may be a response to differences in treatment intensity across the gradient. Consequently, shifts in the date of snowmelt due to global warming may affect species more at higher than at lower altitudes, as changes may be more pronounced at higher altitudes. These data indicate a rather low risk of drought events on flowering phenology in the Bavarian Alps. KW - flowering KW - advanced KW - snowmelt KW - Alps KW - BBCH KW - climate change KW - delayed snowmelt Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-126888 VL - 64 IS - 1 ER - TY - JOUR A1 - Holzschuh, Andrea A1 - Dormann, Carsten F. A1 - Tscharntke, Teja A1 - Steffan-Dewenter, Ingolf T1 - Mass-flowering crops enhance wild bee abundance JF - Oecologia N2 - Although agricultural habitats can provide enormous amounts of food resources for pollinator species, links between agricultural and (semi-)natural habitats through dispersal and foraging movements have hardly been studied. In 67 study sites, we assessed the interactions between mass-flowering oilseed rape fields and semi-natural grasslands at different spatial scales, and their effects on the number of brood cells of a solitary cavity-nesting bee. The probability that the bee Osmia bicornis colonized trap nests in oilseed rape fields increased from 12 to 59 % when grassland was nearby, compared to fields isolated from grassland. In grasslands, the number of brood cells of O. bicornis in trap nests was 55 % higher when adjacent to oilseed rape compared to isolated grasslands. The percentage of oilseed rape pollen in the larval food was higher in oilseed rape fields and grasslands adjacent to oilseed rape than in isolated grasslands. In both oilseed rape fields and grasslands, the number of brood cells was positively correlated with the percentage of oilseed rape pollen in the larval food. We show that mass-flowering agricultural habitats—even when they are intensively managed—can strongly enhance the abundance of a solitary bee species nesting in nearby semi-natural habitats. Our results suggest that positive effects of agricultural habitats have been underestimated and might be very common (at least) for generalist species in landscapes consisting of a mixture of agricultural and semi-natural habitats. These effects might also have—so far overlooked—implications for interspecific competition and mutualistic interactions in semi-natural habitats. KW - spillover KW - trap nests KW - pollen KW - oilseed rape KW - canola Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-126852 VL - 172 IS - 2 ER - TY - JOUR A1 - Gross, Hans J. A1 - Samhita, Laasya T1 - The “Clever Hans Phenomenon” revisited N2 - In the first decade of the 20th century, a horse named Hans drew worldwide attention in Berlin as the first and most famous “speaking” and thinking animal. Hans solved calculations by tapping numbers or letters with his hoof in order to answer questions. Later on, it turned out that the horse was able to give the correct answer by reading the microscopic signals in the face of the questioning person. This observation caused a revolution and as a consequence, experimenters avoided strictly any face-to-face contact in studies about cognitive abilities of animals—a fundamental lesson that is still not applied rigorously. KW - Clever Hans Phenomenon Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-112626 ER - TY - JOUR A1 - Kang, Ji Hyoun A1 - Schartl, Manfred A1 - Walter, Ronald B. A1 - Meyer, Axel T1 - Comprehensive phylogenetic analysis of all species of swordtails and platies (Pisces: Genus Xiphophorus) uncovers a hybrid origin of a swordtail fish, Xiphophorus monticolus, and demonstrates that the sexually selected sword originated in the ancestral lineage of the genus, but was lost again secondarily JF - BMC Evolutionary Biology N2 - Background: Males in some species of the genus Xiphophorus, small freshwater fishes from Meso-America, have an extended caudal fin, or sword - hence their common name "swordtails". Longer swords are preferred by females from both sworded and - surprisingly also, non-sworded (platyfish) species that belong to the same genus. Swordtails have been studied widely as models in research on sexual selection. Specifically, the pre-existing bias hypothesis was interpreted to best explain the observed bias of females in presumed ancestral lineages of swordless species that show a preference for assumed derived males with swords over their conspecific swordless males. However, many of the phylogenetic relationships within this genus still remained unresolved. Here we construct a comprehensive molecular phylogeny of all 26 known Xiphophorus species, including the four recently described species (X. kallmani, X. mayae, X. mixei and X. monticolus). We use two mitochondrial and six new nuclear markers in an effort to increase the understanding of the evolutionary relationships among the species in this genus. Based on the phylogeny, the evolutionary history and character state evolution of the sword was reconstructed and found to have originated in the common ancestral lineage of the genus Xiphophorus and that it was lost again secondarily. Results: We estimated the evolutionary relationships among all known species of the genus Xiphophorus based on the largest set of DNA markers so far. The phylogeny indicates that one of the newly described swordtail species, Xiphophorus monticolus, is likely to have arisen through hybridization since it is placed with the southern platyfish in the mitochondrial phylogeny, but with the southern swordtails in the nuclear phylogeny. Such discordance between these two types of markers is a strong indication for a hybrid origin. Additionally, by using a maximum likelihood approach the possession of the sexually selected sword trait is shown to be the most likely ancestral state for the genus Xiphophorus. Further, we provide a well supported estimation of the phylogenetic relationships between the previously unresolved northern swordtail groups. Conclusions: This comprehensive molecular phylogeny of the entire genus Xiphophorus provides evidence that a second swordtail species, X. monticolus, arose through hybridization. Previously, we demonstrated that X. clemenciae, another southern swordtail species, arose via hybridization. These findings highlight the potential key role of hybridization in the evolution of this genus and suggest the need for further investigations into how hybridization contributes to speciation more generally. KW - parten-offspring conflict KW - introgressive hybridization KW - mitochondrial DNA KW - molecular phylogeny KW - likelihood approach KW - tree selection KW - preexisting bias KW - adaptive radiation KW - evolution KW - poeciliidae Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-121853 SN - 1471-2148 VL - 13 IS - 25 ER - TY - JOUR A1 - Ngwa, Che Julius A1 - Scheuermayer, Matthias A1 - Mair, Gunnar Rudolf A1 - Kern, Selina A1 - Brügl, Thomas A1 - Wirth, Christine Clara A1 - Aminake, Makoah Nigel A1 - Wiesner, Jochen A1 - Fischer, Rainer A1 - Vilcinskas, Andreas A1 - Pradel, Gabriele T1 - Changes in the transcriptome of the malaria parasite Plasmodium falciparum during the initial phase of transmission from the human to the mosquito JF - BMC Genomics N2 - Background: The transmission of the malaria parasite Plasmodium falciparum from the human to the mosquito is mediated by dormant sexual precursor cells, the gametocytes, which become activated in the mosquito midgut. Because gametocytes are the only parasite stages able to establish an infection in the mosquito, they play a crucial role in spreading the tropical disease. The human-to-mosquito transmission triggers important molecular changes in the gametocytes, which initiate gametogenesis and prepare the parasite for life-cycle progression in the insect vector. Results: To better understand gene regulations during the initial phase of malaria parasite transmission, we focused on the transcriptome changes that occur within the first half hour of parasite development in the mosquito. Comparison of mRNA levels of P. falciparum gametocytes before and 30 min following activation using suppression subtractive hybridization (SSH) identified 126 genes, which changed in expression during gametogenesis. Among these, 17.5% had putative functions in signaling, 14.3% were assigned to cell cycle and gene expression, 8.7% were linked to the cytoskeleton or inner membrane complex, 7.9% were involved in proteostasis and 6.4% in metabolism, 12.7% were cell surface-associated proteins, 11.9% were assigned to other functions, and 20.6% represented genes of unknown function. For 40% of the identified genes there has as yet not been any protein evidence. For a subset of 27 genes, transcript changes during gametogenesis were studied in detail by real-time RT-PCR. Of these, 22 genes were expressed in gametocytes, and for 15 genes transcript expression in gametocytes was increased compared to asexual blood stage parasites. Transcript levels of seven genes were particularly high in activated gametocytes, pointing at functions downstream of gametocyte transmission to the mosquito. For selected genes, a regulated expression during gametogenesis was confirmed on the protein level, using quantitative confocal microscopy. Conclusions: The obtained transcriptome data demonstrate the regulations of gene expression immediately following malaria parasite transmission to the mosquito. Our findings support the identification of proteins important for sexual reproduction and further development of the mosquito midgut stages and provide insights into the genetic basis of the rapid adaption of Plasmodium to the insect vector. KW - parasitophorous vacuole KW - sexual development KW - gametocyte KW - transcriptome KW - signal peptide peptidase KW - host cell interface KW - alpha-tubulin-II KW - life-cycle KW - protein kinases KW - in-vitro KW - erythroyte invation KW - blocking antibodies KW - malaria KW - plasmodium falciparum KW - gametogenesis KW - mosquito KW - transmission Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-121905 SN - 1471-2164 VL - 14 IS - 256 ER -