TY - THES A1 - Ricker, Robert T1 - Synthesis, group 10 metal-catalyzed cyclization reactions and hydroboration of polyynes T1 - Synthese, Gruppe 10 metallkatalysierte Cyclisierungsreaktionen und Hydroborierung von Polyinen N2 - Bisdiynes undergo Pd(0)-catalyzed cyclization, forming azulene and naphthalene products. When dibenzylideneacetone is present in the reaction, it undergoes a [2+2+2] cyclization with the bisdiyne, forming cyclohexadiene derivatives. Ni(0) catalyzes the [2+2+2] cycloaddition of diynes with tolanes towards alkynylated o-terphenyl derivatives. The D-A substituted products are solvatochromic, fluorescent dyes with high quantum yields and short lifetimes. Bis-triarylborane tetrayne dyes were synthesized in both neutral and tetracationic forms, as potential DNA/RNA sensor. Both molecules are weakly fluorescent in solution and exhibit characteristic alkyne absorptions in the Raman spectra. Tributyl phosphine catalyzes the trans-hydroboration of 1,3-butadiynes with HBpin. We confirmed experimentally via NMR and HRMS experiments, that phosphine attack on the diyne is a key step in the catalytic cycle. N2 - Bisdiyne gehen eine Pd(0)-katalysierte Zyklisierung ein, bei der Azulen- und Naphthalinprodukte entstehen. Wenn Dibenzylidenaceton in der Reaktion vorhanden ist, kommt es zu einer [2+2+2]-Cyclisierung mit dem Bisdiin, wobei Cyclohexadien-Derivate entstehen. Ni(0) katalysiert die [2+2+2]-Cycloaddition von Diinen mit Tolanen zu alkinilierten o-Terphenylderivaten. Die D-A-substituierten Produkte sind solvatochrome, fluoreszierende Farbstoffe mit hohen Quantenausbeuten und kurzen Lebensdauern. Bis-Triarylboran-Tetrain-Farbstoffe wurden sowohl in neutraler als auch in tetrakationischer Form synthetisiert, die als DNA/RNA-Sensoren in Frage kommen. Beide Moleküle sind in Lösung schwach fluoreszierend und zeigen charakteristische Alkin-Absorptionen in den Raman-Spektren. Tributylphosphin katalysiert die trans-Hydroboration von 1,3-Butadinen mit HBpin. Mittels NMR- und HRMS-Experimenten haben wir experimentell bestätigt, dass der Phosphin-Angriff auf das Diin ein Schlüsselschritt im katalytischen Zyklus ist. KW - Polyine KW - Diine KW - Fluoreszierender Stoff KW - Übergangsmetall KW - group 10 element KW - cyclization reactions KW - fluorescence Y1 - 2023 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-286801 ER - TY - JOUR A1 - Schulz, Alexander A1 - Würthner, Frank T1 - Folding-induced fluorescence enhancement in a series of merocyanine hetero-folda-trimers JF - Angewandte Chemie International Edition N2 - Many dyes suffer from fast non-radiative decay pathways, thereby showing only short-lived excited states and weak photoluminescence. Here we show a pronounced fluorescence enhancement for a weakly fluorescent merocyanine (MC) dye by being co-facially stacked to other dyes in hetero-folda-trimer architectures. By means of fluorescence spectroscopy (lifetime, quantum yield) the fluorescence enhancement was explained by the rigidification of the emitting chromophore in the defined foldamer architecture and the presence of a non-forbidden lowest exciton state in H-coupled hetero-aggregates. This folding-induced fluorescence enhancement (FIFE) for specific sequences of π-stacked dyes points at a viable strategy toward improved fluorophores that relates to the approach used by nature in the green fluorescent protein (GFP). KW - organic chemistry KW - merocyanines KW - aggregation KW - dyes/pigments KW - fluorescence KW - folding Y1 - 2022 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-256582 VL - 61 IS - 2 ER - TY - JOUR A1 - Full, Felix A1 - Wölflick, Quentin A1 - Radacki, Krzysztof A1 - Braunschweig, Holger A1 - Nowak‐Król, Agnieszka T1 - Enhanced Optical Properties of Azaborole Helicenes by Lateral and Helical Extension JF - Chemistry – A European Journal N2 - The synthesis and characterization of laterally extended azabora[5]‐, ‐[6]‐ and ‐[7]helicenes, assembled from N‐heteroaromatic and dibenzo[g,p]chrysene building blocks is described. Formally, the π‐conjugated systems of the pristine azaborole helicenes were enlarged with a phenanthrene unit leading to compounds with large Stokes shifts, significantly enhanced luminescence quantum yields (Φ) and dissymmetry factors (g\(_{lum}\)). The beneficial effect on optical properties was also observed for helical elongation. The combined contributions of lateral and helical extensions resulted in a compound showing green emission with Φ of 0.31 and |g\(_{lum}\)| of 2.2×10\(^{−3}\), highest within the series of π‐extended azaborahelicenes and superior to emission intensity and chiroptical response of its non‐extended congener. This study shows that helical and lateral extensions of π‐conjugated systems are viable strategies to improve features of azaborole helicenes. In addition, single crystal X‐ray analysis of configurationally stable [6]‐ and ‐[7]helicenes was used to provide insight into their packing arrangements. KW - azaborole KW - circularly polarized luminescence KW - fluorescence KW - helicene KW - π-extension Y1 - 2022 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-293671 VL - 28 IS - 62 ER - TY - JOUR A1 - Gmach, Philipp A1 - Bathe-Peters, Marc A1 - Telugu, Narasimha A1 - Miller, Duncan C. A1 - Annibale, Paolo T1 - Fluorescence spectroscopy of low-level endogenous β-adrenergic receptor expression at the plasma membrane of differentiating human iPSC-derived cardiomyocytes JF - International Journal of Molecular Sciences N2 - The potential of human-induced pluripotent stem cells (hiPSCs) to be differentiated into cardiomyocytes (CMs) mimicking adult CMs functional morphology, marker genes and signaling characteristics has been investigated since over a decade. The evolution of the membrane localization of CM-specific G protein-coupled receptors throughout differentiation has received, however, only limited attention to date. We employ here advanced fluorescent spectroscopy, namely linescan Fluorescence Correlation Spectroscopy (FCS), to observe how the plasma membrane abundance of the β\(_1\)- and β\(_2\)-adrenergic receptors (β\(_{1/2}\)-ARs), labelled using a bright and photostable fluorescent antagonist, evolves during the long-term monolayer culture of hiPSC-derived CMs. We compare it to the kinetics of observed mRNA levels in wildtype (WT) hiPSCs and in two CRISPR/Cas9 knock-in clones. We conduct these observations against the backdrop of our recent report of cell-to-cell expression variability, as well as of the subcellular localization heterogeneity of β-ARs in adult CMs. KW - GPCR KW - β-adrenergic receptors KW - hiPSC-CM KW - cardiomyocyte KW - fluorescence correlation spectroscopy KW - FCS KW - fluorescence KW - CRISPR/Cas9 KW - differentiation Y1 - 2022 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-288277 SN - 1422-0067 VL - 23 IS - 18 ER - TY - JOUR A1 - Wildervanck, Martijn J. A1 - Hecht, Reinhard A1 - Nowak-Król, Agnieszka T1 - Synthesis and strong solvatochromism of push-pull thienylthiazole boron complexes JF - Molecules N2 - The solvatochromic behavior of two donor-π bridge-acceptor (D-π-A) compounds based on the 2-(3-boryl-2-thienyl)thiazole π-linker and indandione acceptor moiety are investigated. DFT/TD-DFT calculations were performed in combination with steady-state absorption and emission measurements, along with electrochemical studies, to elucidate the effect of two different strongly electron-donating hydrazonyl units on the solvatochromic and fluorescence behavior of these compounds. The Lippert–Mataga equation was used to estimate the change in dipole moments (Δµ) between ground and excited states based on the measured spectroscopic properties in solvents of varying polarity with the data being supported by theoretical studies. The two asymmetrical D-π-A molecules feature strong solvatochromic shifts in fluorescence of up to ~4300 cm\(^{−1}\) and a concomitant change of the emission color from yellow to red. These changes were accompanied by an increase in Stokes shift to reach values as large as ~5700–5800 cm\(^{−1}\). Quantum yields of ca. 0.75 could be observed for the N,N-dimethylhydrazonyl derivative in nonpolar solvents, which gradually decreased along with increasing solvent polarity, as opposed to the consistently reduced values obtained for the N,N-diphenylhydrazonyl derivative of up to ca. 0.20 in nonpolar solvents. These two push–pull molecules are contrasted with a structurally similar acceptor-π bridge-acceptor (A-π-A) compound. KW - solvatochromism KW - donor–acceptor KW - fluorescence KW - hydrazone KW - Lippert–Mataga plot KW - push–pull thienylthiazole KW - tetracoordinated boron Y1 - 2022 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-286186 SN - 1420-3049 VL - 27 IS - 17 ER - TY - JOUR A1 - Košćak, Marta A1 - Pehar, Isabela A1 - Božinović, Ksenija A1 - Kole, Goutam Kumar A1 - Sobočanec, Sandra A1 - Podgorski, Iva I. A1 - Pinterić, Marija A1 - Müller-Buschbaum, Klaus A1 - Majhen, Dragomira A1 - Piantanida, Ivo A1 - Marder, Todd B. T1 - Para-N-methylpyridinium pyrenes: impact of positive charge on ds-DNA/RNA and protein recognition, photo-induced bioactivity, and intracellular localisation JF - Pharmaceutics N2 - The 2- and 2,7- substituted para-N-methylpyridinium pyrene cations show high-affinity intercalation into ds-DNAs, whereas their non-methylated analogues interacted with ds-DNA/RNA only in the protonated form (at pH 5), but not at physiological conditions (pH 7). The fluorescence from non-methylated analogues was strongly dependent on the protonation of the pyridines; consequently, they act as fluorescence ratiometric probes for simultaneous detection of both ds-DNA and BSA at pH 5, relying on the ratio between intensities at 420 nm (BSA specific) and 520 nm (DNA specific), whereby exclusively ds-DNA sensing could be switched-off by adjustment to pH 7. Only methylated, permanently charged pyrenes show photoinduced cleavage of circular DNA, attributed to pyrene-mediated irradiation-induced production of singlet oxygen. Consequently, the moderate toxicity of these cations against human cell lines is strongly increased upon irradiation. Detailed studies revealed increased total ROS production in cells treated by the compounds studied, accompanied by cell swelling and augmentation of cellular complexity. The most photo-active 2-para-N-methylpyridinium pyrene showed significant localization at mitochondria, its photo-bioactivity likely due to mitochondrial DNA damage. Other derivatives were mostly non-selectively distributed between various cytoplasmic organelles, thus being less photoactive. KW - N-methylpyridinium pyrene KW - DNA sensing KW - protein sensing KW - singlet oxygen KW - photodynamic therapy KW - fluorescence KW - theranostics Y1 - 2022 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-297247 SN - 1999-4923 VL - 14 IS - 11 ER - TY - JOUR A1 - Ban, Željka A1 - Karačić, Zrinka A1 - Tomić, Sanja A1 - Amini, Hashem A1 - Marder, Todd B. A1 - Piantanida, Ivo T1 - Triarylborane dyes as a novel non-covalent and non-inhibitive fluorimetric markers for DPP III enzyme JF - Molecules N2 - Novel dyes were prepared by simple “click CuAAC” attachment of a triarylborane–alkyne to the azide side chain of an amino acid yielding triarylborane dye 1 which was conjugated with pyrene (dye 2) forming a triarylborane–pyrene FRET pair. In contrast to previous cationic triarylboranes, the novel neutral dyes interact only with proteins, while their affinity to DNA/RNA is completely abolished. Both the reference triarylborane amino acid and triarylborane–pyrene conjugate bind to BSA and the hDPP III enzyme with high affinities, exhibiting a strong (up to 100-fold) fluorescence increase, whereby the triarylborane–pyrene conjugate additionally retained FRET upon binding to the protein. Furthermore, the triarylborane dyes, upon binding to the hDPP III enzyme, did not impair its enzymatic activity under a wide range of experimental conditions, thus being the first non-covalent fluorimetric markers for hDPP III, also applicable during enzymatic reactions with hDPP III substrates. KW - triarylborane KW - pyrene KW - click CuAAC synthesis KW - DPP III enzyme KW - BSA KW - fluorescence Y1 - 2021 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-245046 SN - 1420-3049 VL - 26 IS - 16 ER - TY - JOUR A1 - Full, Julian A1 - Panchal, Santosh P. A1 - Götz, Julian A1 - Krause, Ana‐Maria A1 - Nowak‐Król, Agnieszka T1 - Modular Synthesis of Organoboron Helically Chiral Compounds: Cutouts from Extended Helices JF - Angewandte Chemie International Edition N2 - Two types of helically chiral compounds bearing one and two boron atoms were synthesized by a modular approach. Formation of the helical scaffolds was executed by the introduction of boron to flexible biaryl and triaryl derived from small achiral building blocks. All‐ortho‐fused azabora[7]helicenes feature exceptional configurational stability, blue or green fluorescence with quantum yields (Φ\(_{fl}\)) of 18–24 % in solution, green or yellow solid‐state emission (Φ\(_{fl}\) up to 23 %), and strong chiroptical response with large dissymmetry factors of up to 1.12×10\(^{-2}\). Azabora[9]helicenes consisting of angularly and linearly fused rings are blue emitters exhibiting Φ\(_{fl}\) of up to 47 % in CH\(_{2}\)Cl\(_{2}\) and 25 % in the solid state. As revealed by the DFT calculations, their P–M interconversion pathway is more complex than that of H1. Single‐crystal X‐ray analysis shows clear differences in the packing arrangement of methyl and phenyl derivatives. These molecules are proposed as primary structures of extended helices. KW - chirality KW - circular dichroism KW - fluorescence KW - helicene KW - organoboron Y1 - 2021 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-225775 VL - 60 IS - 8 SP - 4350 EP - 4357 ER - TY - THES A1 - Griesbeck, Stefanie Ingrid T1 - A Very Positive Image of Boron: Triarylborane Chromophores for Live Cell Imaging T1 - Ein sehr positives Bild von Bor: Triarylboran Farbstoffe für Lebendzellenmikroskopie N2 - Efficient quadrupolar chromophores (A–pi–A) with triarylborane moieties as acceptors have been studied by the Marder group regarding their non‐linear optical properties and two‐photon absorption ability for many years. Within the present work, this class of dyes found applications in live‐cell imaging. Therefore, the dyes need to be water‐soluble and water‐stable in diluted aqueous solutions, which was examined in Chapter 2. Furthermore, the influence of the pi‐bridge on absorption and emission maxima, fluorescence quantum yields and especially the two-photon absorption properties of the chromophores was investigated in Chapter 3. In Chapter 4, a different strategy for the design of efficient two‐photon excited fluorescence imaging dyes was explored using dipoles (D–A) and octupoles (DA3). Finding the optimum balance between water‐stability and pi‐conjugation and, therefore, red‐shifted absorption and emission and high fluorescence quantum yields, was investigated in Chapter 5 N2 - Effiziente quadrupole Farbstoffe (A–pi–A) mit Triarylboraneinheiten als Akzeptoren wurden innerhalb der letzten Jahre von der Arbeitsgruppe Marder bezüglich ihrer nicht‐linearen optischen Eigenschaften und Zweiphotonenabsorptionsfähigkeiten untersucht. In der vorliegenden Arbeit wurde diese Farbstoffklasse zur Untersuchung lebender Zellen mittels Fluoreszenzmikroskopie angewendet. Hierzu müssen die Farbstoffe wasserlöslich und in verdünnten wässrigen Lösungen stabil sein. Dies wurde in Kapitel 2 untersucht. Außerdem wurde der Einfluss der pi‐Brücke auf das Absorptions‐ und Emissionsmaximum, die Fluoreszenzquantenausbeute und vor allem die Zweiphotonenabsorptionsfähigkeit untersucht (Kapitel 3). In Kapitel 4 wurden andere molekulare Designstrategien verfolgt um effiziente Zweiphotonenangeregtenfluoreszenzfarbstoffe zu erhalten. Dazu zählen die Strukturmotive des Dipols (D–A) und des Oktupols (DA3). Bestandteil des Kapitels 5 war die Optimierung zwischen Wasserstabilität und pi‐Konjugation und eine damit verbundene rotverschobene Absorption und Emission, sowie eine hohe Fluoreszenzquantenausbeute KW - Borane KW - Bor KW - Lumineszenz KW - Fluoreszenz KW - Zweiphotonenabsorption KW - imaging KW - luminescence KW - fluorescence KW - two-photon absorption KW - borane Y1 - 2020 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-179921 ER - TY - JOUR A1 - Peissert, Stefan A1 - Sauer, Florian A1 - Grabarczyk, Daniel B. A1 - Braun, Cathy A1 - Sander, Gudrun A1 - Poterszman, Arnaud A1 - Egly, Jean-Marc A1 - Kuper, Jochen A1 - Kisker, Caroline T1 - In TFIIH the Arch domain of XPD is mechanistically essential for transcription and DNA repair JF - Nature Communications N2 - The XPD helicase is a central component of the general transcription factor TFIIH which plays major roles in transcription and nucleotide excision repair (NER). Here we present the high-resolution crystal structure of the Arch domain of XPD with its interaction partner MAT1, a central component of the CDK activating kinase complex. The analysis of the interface led to the identification of amino acid residues that are crucial for the MAT1-XPD interaction. More importantly, mutagenesis of the Arch domain revealed that these residues are essential for the regulation of (i) NER activity by either impairing XPD helicase activity or the interaction of XPD with XPG; (ii) the phosphorylation of the RNA polymerase II and RNA synthesis. Our results reveal how MAT1 shields these functionally important residues thereby providing insights into how XPD is regulated by MAT1 and defining the Arch domain as a major mechanistic player within the XPD scaffold. KW - nucleotide excision repair KW - nuclear receptors KW - helicase KW - transactivation KW - fluorescence KW - recognition KW - subunit KW - binding KW - sulfur KW - kinease Y1 - 2020 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-229857 VL - 11 IS - 1 ER -