TY - JOUR A1 - Ban, Željka A1 - Griesbeck, Stefanie A1 - Tomić, Sanja A1 - Nitsch, Jörn A1 - Marder, Todd B. A1 - Piantanida, Ivo T1 - A Quadrupolar Bis-Triarylborane Chromophore as a Fluorimetric and Chirooptic Probe for Simultaneous and Selective Sensing of DNA, RNA and Proteins JF - Chemistry - A European Journal N2 - A water‐soluble tetracationic quadrupolar bis‐triarylborane chromophore showed strong binding to ds‐DNA, ds‐RNA, ss‐RNA, as well as to the naturally most abundant protein, BSA. The novel dye can distinguish between DNA/RNA and BSA by fluorescence emission separated by Δv =3600 cm\(^{-1}\), allowing for the simultaneous quantification of DNA/RNA and protein (BSA) in a mixture. The applicability of such fluorimetric differentiation in vitro was demonstrated, strongly supporting a protein‐like target as a dominant binding site of 1 in cells. Moreover, our dye also bound strongly to ss‐RNA, with the unusual rod‐like structure of the dye, decorated by four positive charges at its termini and having a hydrophobic core, acting as a spindle for wrapping A, C and U ss‐RNAs, but not poly G, the latter preserving its secondary structure. To the best of our knowledge, such unmatched, multifaceted binding activity of a small molecule toward DNA, RNA, and proteins and the selectivity of its fluorimetric and chirooptic response makes the quadrupolar bis‐triarylborane a novel chromophore/fluorophore moiety for biochemical applications. KW - boranes KW - circular dichrosism KW - fluorescent probes KW - luminescence KW - sensors Y1 - 2020 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-208154 VL - 26 IS - 10 ER - TY - JOUR A1 - Ban, Željka A1 - Karačić, Zrinka A1 - Tomić, Sanja A1 - Amini, Hashem A1 - Marder, Todd B. A1 - Piantanida, Ivo T1 - Triarylborane dyes as a novel non-covalent and non-inhibitive fluorimetric markers for DPP III enzyme JF - Molecules N2 - Novel dyes were prepared by simple “click CuAAC” attachment of a triarylborane–alkyne to the azide side chain of an amino acid yielding triarylborane dye 1 which was conjugated with pyrene (dye 2) forming a triarylborane–pyrene FRET pair. In contrast to previous cationic triarylboranes, the novel neutral dyes interact only with proteins, while their affinity to DNA/RNA is completely abolished. Both the reference triarylborane amino acid and triarylborane–pyrene conjugate bind to BSA and the hDPP III enzyme with high affinities, exhibiting a strong (up to 100-fold) fluorescence increase, whereby the triarylborane–pyrene conjugate additionally retained FRET upon binding to the protein. Furthermore, the triarylborane dyes, upon binding to the hDPP III enzyme, did not impair its enzymatic activity under a wide range of experimental conditions, thus being the first non-covalent fluorimetric markers for hDPP III, also applicable during enzymatic reactions with hDPP III substrates. KW - triarylborane KW - pyrene KW - click CuAAC synthesis KW - DPP III enzyme KW - BSA KW - fluorescence Y1 - 2021 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-245046 SN - 1420-3049 VL - 26 IS - 16 ER - TY - JOUR A1 - Barak, Arvind A1 - Dhiman, Nishant A1 - Sturm, Floriane A1 - Rauch, Florian A1 - Lakshmanna, Yapamanu Adithya A1 - Findlay, Karen S. A1 - Beeby, Andrew A1 - Marder, Todd B. A1 - Umapathy, Siva T1 - Excited‐State Intramolecular Charge‐Transfer Dynamics in 4‐Dimethylamino‐4′‐cyanodiphenylacetylene: An Ultrafast Raman Loss Spectroscopic Perspective JF - ChemPhotoChem N2 - Photo‐initiated intramolecular charge transfer (ICT) processes play a pivotal role in the excited state reaction dynamics in donor‐bridge‐acceptor systems. The efficacy of such a process can be improved by modifying the extent of π‐conjugation, relative orientation/twists of the donor/acceptor entities and polarity of the environment. Herein, 4‐dimethylamino‐4′‐cyanodiphenylacetylene (DACN‐DPA), a typical donor‐π‐bridge‐acceptor system, was chosen to unravel the role of various internal coordinates that govern the extent of photo‐initiated ICT dynamics. Transient absorption (TA) spectra of DACN‐DPA in n‐hexane exhibit a lifetime of >2 ns indicating the formation of a triplet state while, in acetonitrile, a short time‐constant of ∼2 ps indicates the formation of charge transferred species. Ultrafast Raman loss spectroscopy (URLS) measurements show distinct temporal and spectral dynamics of Raman bands associated with C≡C and C=C stretching vibrations. The appearance of a new band at ∼1492 cm\(^{−1}\) in acetonitrile clearly indicates structural modification during the ultrafast ICT process. Furthermore, these observations are supported by TD‐DFT computations. KW - charge transfer KW - ultrafast Raman loss spectroscopy KW - 4-dimethylamino-4′-cyanodiphenylacetylene KW - transient absorption KW - TD-DFT Y1 - 2022 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-312280 VL - 6 IS - 12 ER - TY - JOUR A1 - Belaidi, Houmam A1 - Rauch, Florian A1 - Zhang, Zuolun A1 - Latouche, Camille A1 - Boucekkine, Abdou A1 - Marder, Todd B. A1 - Halet, Jean-Francois T1 - Insights into the optical properties of triarylboranes with strongly electron-accepting bis(fluoromesityl)boryl groups: when theory meets experiment JF - ChemPhotoChem N2 - The photophysical properties (absorption, fluorescence and phosphorescence) of a series of triarylboranes of the form 4-D-C\(_6\)H\(_4\)-B(Ar)\(_2\) (D=\(^t\)Bu or NPh\(_2\); Ar=mesityl (Mes) or 2,4,6-tris(trifluoromethylphenyl (Fmes)) were analyzed theoretically using state-of-the-art DFT and TD-DFT methods. Simulated emission spectra and computed decay rate constants are in very good agreement with the experimental data. Unrestricted electronic computations including vibronic contributions explain the unusual optical behavior of 4-\(^t\)Bu-C\(_6\)H\(_4\)-B(Fmes)\(_2\) 2, which shows both fluorescence and phosphorescence at nearly identical energies (at 77 K in a frozen glass). Analysis of the main normal modes responsible for the phosphorescence vibrational fine structure indicates that the bulky tert-butyl group tethered to the phenyl ring is strongly involved. Interestingly, in THF solvent, the computed energies of the singlet and triplet excited states are very similar for compound 2 only, which may explain why 2 shows phosphorescence in contrast to the other members of the series. KW - boron KW - density functional calculations KW - luminescence KW - phosphorescence KW - photophysics KW - activated delayes flourescence KW - 3-coordinate organoboron compounds KW - light-emitting-diodes KW - phosphorescene spectra KW - molecular structures KW - high efficiency KW - pi-conjugation KW - trivalent boron KW - single photon KW - donor Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-205600 VL - 4 IS - 3 ER - TY - JOUR A1 - Berger, Sarina M. A1 - Ferger, Matthias A1 - Marder, Todd B. T1 - Synthetic Approaches to Triarylboranes from 1885 to 2020 JF - Chemistry – A European Journal N2 - In recent years, research in the fields of optoelectronics, anion sensors and bioimaging agents have been greatly influenced by novel compounds containing triarylborane motifs. Such compounds possess an empty p‐orbital at boron which results in useful optical and electronic properties. Such a diversity of applications was not expected when the first triarylborane was reported in 1885. Synthetic approaches to triarylboranes underwent various changes over the following century, some of which are still used in the present day, such as the generally applicable routes developed by Krause et al. in 1922, or by Grisdale et al. in 1972 at Eastman Kodak. Some other developments were not pursued further after their initial reports, such as the synthesis of two triarylboranes bearing three different aromatic groups by Mikhailov et al. in 1958. This review summarizes the development of synthetic approaches to triarylboranes from their first report nearly 135 years ago to the present. KW - arylmetalate KW - boranes KW - chromophore KW - Lewis acid KW - synthetic methods Y1 - 2021 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-238952 VL - 27 IS - 24 SP - 7043 EP - 7058 ER - TY - JOUR A1 - Berger, Sarina M. A1 - Rühe, Jessica A1 - Schwarzmann, Johannes A1 - Phillipps, Alexandra A1 - Richard, Ann-Katrin A1 - Ferger, Matthias A1 - Krummenacher, Ivo A1 - Tumir, Lidija-Marija A1 - Ban, Željka A1 - Crnolatac, Ivo A1 - Majhen, Dragomira A1 - Barišić, Ivan A1 - Piantanida, Ivo A1 - Schleier, Domenik A1 - Griesbeck, Stefanie A1 - Friedrich, Alexandra A1 - Braunschweig, Holger A1 - Marder, Todd B. T1 - Bithiophene-Cored, mono-, bis-, and tris-(Trimethylammonium)-Substituted, bis-Triarylborane Chromophores: Effect of the Number and Position of Charges on Cell Imaging and DNA/RNA Sensing JF - Chemistry—A European Journal N2 - The synthesis, photophysical, and electrochemical properties of selectively mono-, bis- and tris-dimethylamino- and trimethylammonium-substituted bis-triarylborane bithiophene chromophores are presented along with the water solubility and singlet oxygen sensitizing efficiency of the cationic compounds Cat\(^{1+}\), Cat\(^{2+}\), Cat(i)\(^{2+}\), and Cat\(^{3+}\). Comparison with the mono-triarylboranes reveals the large influence of the bridging unit on the properties of the bis-triarylboranes, especially those of the cationic compounds. Based on these preliminary investigations, the interactions of Cat\(^{1+}\), Cat\(^{2+}\), Cat(i)\(^{2+}\), and Cat\(^{3+}\) with DNA, RNA, and DNApore were investigated in buffered solutions. The same compounds were investigated for their ability to enter and localize within organelles of human lung carcinoma (A549) and normal lung (WI38) cells showing that not only the number of charges but also their distribution over the chromophore influences interactions and staining properties. KW - singlet oxygen KW - boron KW - bioimaging KW - luminescence KW - nucleic acid Y1 - 2021 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-256963 VL - 27 IS - 56 ER - TY - JOUR A1 - Betts, Jonathan A1 - Nagel, Christopher A1 - Schatzschneider, Ulrich A1 - Poole, Robert A1 - La Ragione, Robert M. T1 - Antimicrobial activity of carbon monoxide-releasing molecule [Mn(CO)\(_3\)(tpa-\(\kappa^{3}N\))]Br versus multidrug-resistant isolates of Avian Pathogenic \(Escherichia\) \(coli\) and its synergy with colistin JF - PLoS ONE N2 - Antimicrobial resistance is a growing global concern in human and veterinary medicine, with an ever-increasing void in the arsenal of clinicians. Novel classes of compounds including carbon monoxoide-releasing molecules (CORMs), for example the light-activated metal complex [Mn(CO)\(_3\)(tpa-\(\kappa^{3}N\))]Br, could be used as alternatives/to supplement traditional antibacterials. Avian pathogenic \(Escherichia\) \(coli\) (APEC) represent a large reservoir of antibiotic resistance and can cause serious clinical disease in poultry, with potential as zoonotic pathogens, due to shared serotypes and virulence factors with human pathogenic \(E.\) \(coli\). The \(in\) \(vitro\) activity of [Mn(CO)\(_3\)(tpa-\(\kappa^{3}N\))]Br against multidrug-resistant APECs was assessed via broth microtitre dilution assays and synergy testing with colistin performed using checkerboard and time-kill assays. \(In\) \(vivo\) antibacterial activity of [Mn(CO)\(_3\)(tpa-\(\kappa^{3}N\))]Br alone and in combination with colistin was determined using the \(Galleria\) \(mellonella\) wax moth larvae model. Animals were monitored for life/death, melanisation and bacterial numbers enumerated from larval haemolymph. \(In\) \(vitro\) testing produced relatively high [Mn(CO)\(_3\)(tpa-\(\kappa^{3}N\))]Br minimum inhibitory concentrations (MICs) of 1024 mg/L. However, its activity was significantly increased with the addition of colistin, bringing MICs down to \(\geq\)32 mg/L. This synergy was confirmed in time-kill assays. \(In\) \(vivo\) assays showed that the combination of [Mn(CO)\(_3\)(tpa-\(\kappa^{3}N\))]Br with colistin produced superior bacterial killing and significantly increased larval survival. In both \(in\) \(vitro\) and \(in\) \(vivo\) assays light activation was not required for antibacterial activity. This data supports further evaluation of [Mn(CO)\(_3\)(tpa-\(\kappa^{3}N\))]Br as a potential agent for treatment of systemic infections in humans and animals, when used with permeabilising agents such as colistin. KW - Chemistry KW - Larvae KW - Antibacterials KW - Antibiotics KW - Birds KW - Bacterial pathogens KW - Manganese KW - Antibiotic resistance KW - Antibacterial therapy Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-173687 VL - 12 IS - 10 ER - TY - JOUR A1 - Bischoff, Lisa A. A1 - Riefer, Jarno A1 - Wirthensohn, Raphael A1 - Bischof, Tobias A1 - Bertermann, Rüdiger A1 - Ignat'ev, Nikolai V. A1 - Finze, Maik T1 - Pentafluoroethylaluminates: A Combined Synthetic, Spectroscopic, and Structural Study JF - Chemistry – A European Journal N2 - Salts of the tetrakis(pentafluoroethyl)aluminate anion [Al(C\(_{2}\)F\(_{5}\))\(_{2}\)]\(^{-}\) were obtained from AlCl\(_{3}\) and LiC\(_{2}\)F\(_{5}\). They were isolated with different counter‐cations and characterized by NMR and vibrational spectroscopy and mass spectrometry. Degradation of the [Al(C\(_{2}\)F\(_{5}\))\(_{4}\)]\(^{-}\) ion was found to proceed via 1,2‐fluorine shifts and stepwise loss of CF(CF\(_{3}\)) under formation of [(C\(_{2}\)F\(_{5}\))\(_{4-n}\)AlF\(_{n}\)]− (n=1–4) as assessed by NMR spectroscopy and mass spectrometry and supported by results of DFT calculations. In addition, the [(C\(_{2}\)F\(_{5}\))AlF\(_{3}\)]\(^{-}\) ion was structurally characterized. KW - aluminum KW - fluorine KW - perfluoroalkyl KW - weakly coordinating anions Y1 - 2020 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-214666 VL - 26 IS - 60 SP - 13615 EP - 13620 ER - TY - JOUR A1 - Brammer, Jan C. A1 - Blanke, Gerd A1 - Kellner, Claudia A1 - Hoffmann, Alexander A1 - Herres-Pawlis, Sonja A1 - Schatzschneider, Ulrich T1 - TUCAN: A molecular identifier and descriptor applicable to the whole periodic table from hydrogen to oganesson JF - Journal of Cheminformatics N2 - TUCAN is a canonical serialization format that is independent of domain-specific concepts of structure and bonding. The atomic number is the only chemical feature that is used to derive the TUCAN format. Other than that, the format is solely based on the molecular topology. Validation is reported on a manually curated test set of molecules as well as a library of non-chemical graphs. The serialization procedure generates a canonical “tuple-style” output which is bidirectional, allowing the TUCAN string to serve as both identifier and descriptor. Use of the Python NetworkX graph library facilitated a compact and easily extensible implementation. KW - software library KW - cheminformatics KW - molecular representation KW - chemical identifier KW - canonicalization KW - molecule isomorphism KW - line notations KW - molecular graphs KW - python Y1 - 2022 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-299730 SN - 1758-2946 VL - 14 IS - 1 ER - TY - JOUR A1 - Braunschweig, Holger A1 - Arnold, Thomas A1 - Gruss, Katrin T1 - cyclo-Tri-mu-oxido-tris{[(eta 5,eta 5)-1,2-bis(cyclopentadienyl)-1,1,2,2-tetramethyldisilane]zirconium(IV)}: atrimeric disila-bridged oxidozirconocene N2 - no abstract available KW - Chemie KW - single-crystal X-ray study KW - T = 174 K KW - R factor = 0.027 KW - wR factor = 0.069 KW - data-to-parameter ratio = 23.6. Y1 - 2011 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-74737 ER -