TY  - JOUR
A1  - Munz, Eberhard
A1  - Jakob, Peter M.
A1  - Borisjuk, Ljudmilla
T1  - The potential of nuclear magnetic resonance to track lipids in planta
JF  - Biochimie
N2  - Nuclear Magnetic Resonance (NMR) provides a highly flexible platform for non invasive analysis and imaging biological samples, since the manipulation of nuclear spin allows the tailoring of experiments to maximize the informativeness of the data. MRI is capable of visualizing a holistic picture of the lipid storage in living plant/seed. This review has sought to explain how the technology can be used to acquire functional and physiological data from plant samples, and how to exploit it to characterize lipid deposition in vivo. At the same time, we have referred to the current limitations of NMR technology as applied to plants, and in particular of the difficulty of transferring methodologies optimized for animal/medical subjects to plant ones. A forward look into likely developments in the field is included, anticipating its key future role in the study of living plant.
KW  - coconut cocos-nucifera
KW  - H-1-NMR spectroscopy
KW  - NMR-spectroscopy
KW  - camelina-sativa
KW  - high-throughput
KW  - oil storage
KW  - seeds
KW  - accumulation
KW  - field
KW  - metabolism
KW  - NMR
KW  - Lipid
KW  - MRI
KW  - CSI
KW  - Plants
KW  - Seeds
Y1  - 2016
U6  - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-186828
VL  - 130
ER  - 
TY  - JOUR
A1  - Borisjuk, Ljudmilla
A1  - Rolletschek, Hardy
A1  - Fuchs, Johannes
A1  - Melkus, Gerd
A1  - Neuberger, Thomas
T1  - Low and High Field Magnetic Resonance for \(in\) \(Vivo\) Analysis of Seeds
JF  - Materials
N2  - Low field NMR has been successfully used for the evaluation of seed composition and quality, but largely only in crop species. We show here that 1.5T NMR provides a reliable means for analysing the seed lipid fraction present in a wide range of species, where both the seed size and lipid concentration differed by >10 fold. Little use of high field NMR has been made in seed research to date, even though it potentially offers many opportunities for studying seed development, metabolism and storage. Here we demonstrate how 17.5T and 20T NMR can be applied to image seed structure, and analyse lipid and metabolite distribution. We suggest that further technical developments in NMR/MRI will facilitate significant advances in our understanding of seed biology.
KW  - Time-domain NMR
KW  - H-1-NMR spectroscopy
KW  - Soybean seeds
KW  - Human brain
KW  - Oil
KW  - Storage
KW  - Plants
KW  - Deterioration
KW  - Transport
KW  - Gradients
KW  - NMR
KW  - MRI
KW  - seed quality
KW  - Crop seed
KW  - lipid imaging
KW  - sucrose allocation
KW  - seed aging
KW  - (13)C
Y1  - 2011
U6  - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-140910
VL  - 4
IS  - 8
ER  - 
TY  - JOUR
A1  - Macintyre, Lynsey
A1  - Zhang, Tong
A1  - Viegelmann, Christina
A1  - Martinez, Ignacio Juarez
A1  - Cheng, Cheng
A1  - Dowdells, Catherine
A1  - Abdelmohsen, Usama Ramadan
A1  - Gernert, Christine
A1  - Hentschel, Ute
A1  - Edrada-Ebel, RuAngelie
T1  - Metabolomic Tools for Secondary Metabolite Discovery from Marine Microbial Symbionts
JF  - Marine Drugs
N2  - Marine invertebrate-associated symbiotic bacteria produce a plethora of novel secondary metabolites which may be structurally unique with interesting pharmacological properties. Selection of strains usually relies on literature searching, genetic screening and bioactivity results, often without considering the chemical novelty and abundance of secondary metabolites being produced by the microorganism until the time-consuming bioassay-guided isolation stages. To fast track the selection process, metabolomic tools were used to aid strain selection by investigating differences in the chemical profiles of 77 bacterial extracts isolated from cold water marine invertebrates from Orkney, Scotland using liquid chromatography-high resolution mass spectrometry (LC-HRMS) and nuclear magnetic resonance (NMR) spectroscopy. Following mass spectrometric analysis and dereplication using an Excel macro developed in-house, principal component analysis (PCA) was employed to differentiate the bacterial strains based on their chemical profiles. NMR H-1 and correlation spectroscopy (COSY) were also employed to obtain a chemical fingerprint of each bacterial strain and to confirm the presence of functional groups and spin systems. These results were then combined with taxonomic identification and bioassay screening data to identify three bacterial strains, namely Bacillus sp. 4117, Rhodococcus sp. ZS402 and Vibrio splendidus strain LGP32, to prioritize for scale-up based on their chemically interesting secondary metabolomes, established through dereplication and interesting bioactivities, determined from bioassay screening.
KW  - multivariate analysis
KW  - metabolic profiling
KW  - metabolomics
KW  - dereplication
KW  - symbiotic bacteria
KW  - mass spectrometry
KW  - NMR
KW  - sponge holicolona-simulans
KW  - bryozoan bugula-neritina
KW  - polyketide synthase gene
Y1  - 2014
U6  - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-116097
SN  - 1660-3397
VL  - 12
IS  - 6
ER  - 
TY  - JOUR
A1  - Müller, T.
A1  - Dieckmann, T.
A1  - Sebald, Walter
A1  - Oschkinat, H.
T1  - Aspects of receptor binding and signalling of interleukin-4 investigated by site-directed mutagenesis and NMR spectroscopy
N2  - Cytokines are hormones that carry information from ceJI to ceH. This information is read from their surface upon binding to transmembrane receptors and by the subsequent initiation of receptor oligomerization. An inftuence on this process through mutagenesis on the hormone surface is highly desirab)e for medical reasons. However, an understanding of hormone-receptor interactions requires insight into the structural changes introduced by the mutations. In this line structural studies on human TL-4 and the medically important IL-4 antagonists YI24D and Y124G are presented. The site a.round YI24 is an important epitope responsible for the a.bility of 11-4 t.o ca.use a signal in the target cells. It is shown that the local main-chain structure around residue 124 in the variants remains unchanged. A strategy is presented here which allows the study of these types of proteins and their variants by NMR which does not require carbon Iabeiied sa.mples.
KW  - Biochemie
KW  - Interleukin-4
KW  - protein structure
KW  - NMR
KW  - signal transduction
Y1  - 1994
U6  - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-62444
ER  - 
TY  - THES
A1  - Stoimenova, Maria
T1  - Normoxic and anoxic metabolism of Nicotiana tabacum transformants lacking root nitrate reductase
N2  - The aim of this work was to find out whether and how nitrate reduction in roots would facilitate survival of hypoxic and anoxic (flooding)-phases. For that purpose, we compared the response of roots of hydroponically grown tobacco wildtype (Nicotiana tabacum cv. Gatersleben) and of a transformant (LNR-H) with no nitrate reductase (NR) in the roots but almost normal NR in leaves (based on a nia2-double mutant). As an additional control we used occasionally a 35S-transformant of the same nia2-double mutant, which on the same genetic background constitutively expressed NR in all organs. In some cases, we also compared the response of roots from WT plants, which had been grown on tungstate for some time in order to completely suppress NR activity. The following root parameters were examined: 1) Growth and morphology 2) Root respiration rates and leaf transpiration 3) Metabolite contents in roots (ATP, hexosemonophosphates, free sugars, starch, amino acids, total protein) 4) Inorganic cation and anion contents 5) Lactate and ethanol production 6) Extractable LDH-and ADH-activities 7) Cytosolic pH values (by 31P-NMR) 8) NO Cation and anion contents of roots from WT and LNR-H were only slightly different, confirming that these plants would be better suited for our purposes than the widely used comparison of nitrate-versus ammonium-grown plants, which usually show up with dramatic differences in their ion contents. Normoxia: LNR-H-plants had shorter and thicker roots than WT with a lower roots surface area per leaf FW. This was probably the major cause for the significantly lower specific leaf transpiration of LNR-H. WT-roots had lower respiration rates, lower ATP-and HMP-contents, slightly lower sugar- and starch contents and somewhat lower amino acid contents than LNR-H roots. However, total protein/FW was almost identical. Obviously the LNR-H transformants did not suffer from N-defciency, and their energy status appeared even better than that of WT-roots. Data from the 35S-transformant were similar to those of WT. This indicates that the observed differences between WT and LNR-H were not due to unknown factors of the genetic nia2-background, but that they could be really traced back to the presence resp. absence of nitrate reduction. Anoxia: Under short-term anoxia (2h) LNR-H plants, but not WT-plants exhibited clear symptoms of wilting, although leaf transpiration was lower with LNR-H. Reasons are not known yet. LNR-H roots produced much more ethanol (which was excreted) and lactate compared to WT, but extractable ADH and LDH activities, were not induced by anoxia. However, the LDH activity background was twice as high as that of the WT troughout the time period studied. Tungstate-treated WT-roots also gave higher fermentation rates than normal WT roots. Sugar- and HMP-contents remained higher in LNR-H roots than in WT. NR in WT roots was activated under anoxia and roots accumulated nitrite, which was also released to the medium. 31P-NMR spectroscopy showed that LNR-H- roots, in spite of their better energy status, acidified their cytosol more than WT roots. Conclusions: Obviously nitrate reduction affects - by as yet unknown mechanisms - root growth and morphology. The much lower anoxic fermentation rates of WT-roots compared to LNR-H roots could not be traced back to an alternative NADH consumption by nitrate reduction, since NR activity was too low for that. An overall estimation of H+-production by glycolysis, fermentation and nitrate reduction (without nitrite reduction, which was absent under anoxia) indicated that the stronger cytosolic acidification of anoxic LNR-H roots was based on their higher fermentation rates. Thus, nitrate reduction under anoxia appears advantageous because of lower fermentation rates and concomitantly lower cytosolic acidification. However, it remained unclear why fermentation rates were so different. Perspective: Preliminary experiments had indicated that WT-roots produced more nitric oxide (NO) under anoxia than LNR-H-roots. Accordingly, we suggest that nitrate reduction, beyond a merely increased NADH-consumption, would lead to advantageous changes in metabolism, eventually via NO-production, which is increasingly recognized as an important signaling compound regulating many plant functions.
N2  - Ziel der Arbeit war es herauszufinden, ob und wie Nitratreduktion in der Wurzel das Überleben von hypoxischen und anoxischen (Überflutungs)-Phasen erleichtert. Hierzu wurden Wurzeln eines hydroponisch angezogenen Tabak-Wildtyps (Nicotiana tabacum cv. Gatersleben), sowie einer Tabaktransformante auf der Basis der nia Doppelmutante, welche Nitratreduktase nur noch in den Blättern exprimierte (LNR-H), im Hinblick auf verschiedene Parameter verglichen. Als zusätzliche Kontrolle wurde eine 35S-Transformante der nia-Doppelmutante gelegentlich in die Vergleiche mit einbezogen, da diese auf dem genetischen Hintergrund der nia Doppelmutante NR in Blättern und Wurzeln konstitutiv exprimierte mit Aktivitäten, die in etwa denen des Wildtyps entsprachen. In einigen Fällen wurde die Nitratreduktase des WT durch Aufzucht auf Wolframat (an Stelle von Molybdat) gehemmt, und diese Pflanzen wurden ebenfalls mit normalen WT-Wurzeln verglichen. Folgende Parameter wurden untersucht: 1) Wachstum und Wurzelmorphologie 2) Atmungsraten, Transpirationsraten 3) Metabolitgehalte (ATP, Hexosemonophosphate, freie Zucker, Aminosäuren) 4) Gehalte anorganischer Kationen und Anionen 5) Lactat- und Ethanolproduktion 6) LDH und ADH-Aktivitäten in Wurzelextrakten 7) Cytosolische pH-Werte mittels 31P-NMR 8) NO Die Analyse des Kationen- und Anionengehaltes der Wurzeln bestätigte zunächst, das die LNR-H-Transformante und der WT sich in dieser Hinsicht nur unwesentlich unterschieden und von daher zum weiteren Vergleich besser geeignet waren als die vielfach verwendete Paarung von nitrat-bzw- ammoniumernährten Pflanzen. Normoxia: LNR-H-Pflanzen hatten kürzere und dickere Wurzeln mit einer niedrigeren Wurzeloberfläche pro Blattfrischgewicht als WT. Dies war vermutlich die Hauptursache für die deutlich niedrigeren Transpirationsraten von LNR-H. WT-Wurzeln hatten unter normoxischen Bedingungen niedrigere Atmungsraten, niedrigere ATP und HMP-Gehalte, etwas niedrigere Zucker und Stärkegehalte und etwas niedrigere Gesamt-Aminosäuregehalte als LNR-H-Wurzeln. Andererseits waren die Gesamt-Proteingehalte (pro FG) praktisch identisch. Offensichtlich litt die LNR-H-Transformante nicht unter N-Mangel, und ihr energetischer Zustand war unter Normalbedingungen eher besser war als der des WT. Die Daten der 35S-Transformante entsprachen weitgehend denen des WT. Dies zeigt, dass die beobachteten Unterschiede nicht auf unbekannten Faktoren des nia2-Hintergrunds beruhten, sondern definitiv auf dem Vorhandensein (bzw. der Abwesenheit) von Nitratreduktion. Anoxia: Unter Anoxia (4h) traten bei LNR-H deutliches Welken der Blätter auf, bei WT dagegen nicht. Die Ursachen sind unklar. Unter Anoxia produzierten LNR-H-Wurzeln sehr viel mehr Ethanol und Lactat als WT, obwohl weder ADH-noch LDH Aktivitäten in Wurzelextrakten unter Anoxia erhöht wurden. Allerdings besaß die LNR-H Transformante permanent doppelt so hohe LDH Aktivitäten wie der WT.h. Auch Wolframat-versorgte WT-Wurzeln produzierten unter Anoxia mehr Lactat und Ethanol als der normale WT. Zucker und HMP-Gehalte blieben in LNR-H höher als in WT. Die NR von WT-Wurzeln wurde unter Anoxia aktiviert und die Wurzeln akkumulierten Nitrit, das großteils an die Nährlösung abgegeben wurde. 31P-NMR-Messungen zeigten, dass LNR-H-Wurzeln trotz ihres besseren Energiezustandes unter Anoxia das Cytosol stärker ansäuerten als WT-Wurzeln. Schlussfolgerungen: Offensichtlich beeinflusst Nitratreduktion auf noch unbekannte Weise Wachstum und Morphologie der Wurzeln unter Normoxia. Die viel niedrigeren Gärungsraten der WT-Wurzeln unter Anoxia konnten nicht auf einen alternativen NADH-Verbrauch der Nitratreduktion zurückgeführt werden, weil dazu die NR-Aktivitäten zu niedrig waren. Bilanzierung der H+-Produktion durch Glycolyse, Gärung und Nitratreduktion zeigte, dass die stärkere cytosolische Ansäuerung der anoxischen LNR-H Wurzeln auf den insgesamt höheren Gärungsraten der LNR-H-Wurzeln beruhen muss. Nitratreduktion ist unter Anoxia also vorteilhaft, weil sehr viel weniger Gärung abläuft und damit cytosolische Ansäuerung abgeschwächt wird. Warum allerdings die Gärungsraten so unterschiedlich waren, blieb unklar. Ausblick: Vorversuche hatten ergeben, dass WT-Wurzeln unter Anoxia mehr Stickstoffmonoxid (NO) produzierten als LNR-H-Wurzeln. Es wird deshalb hypothetisch vorgeschlagen, dass die Nitratreduktion über den bloßen NADH-Verbrauch hinaus durch eine anoxische NO-Produktion ein Signal erzeugt, das vorteilhaft regulierend in Stoffwechsel und Wachstum eingreift.
KW  - Tabak
KW  - Wurzel
KW  - Nitratreduktase
KW  - Anoxie
KW  - nitrate reductase
KW  - anoxia
KW  - roots
KW  - NMR
KW  - fermentation
Y1  - 2002
U6  - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-3498
ER  -