TY - THES A1 - Bartke, Lena T1 - Assoziationsstudien zur Untersuchung der Bedeutung verschiedener Polymorphismen der serotonergen Gene FEV und TPH2 für affektive Störungen und adultes ADHS T1 - Association studies on the relevance of diverse polymorphisms of the serotonergic genes FEV and TPH2 for affective disorders and adult ADHD N2 - Das serotonerge System bildet schon seit Jahrzehnten einen Schwerpunkt in der psychiatrischen Grundlagenforschung. Seinen weit verzweigten Leitungsbahnen wird eine global-modulatorische Eigenschaft für die Aufrechterhaltung des Gleichgewichts zwischen unterschiedlichen Hirnregionen und unterschiedlichen Neurotransmitter-systemen zugeschrieben (Hüther und Rüther, 2000). Darüber hinaus ist die serotonerge Neurotransmission ein Hauptmodulator emotionalen Verhaltens, das Angst und Ängstlichkeit ebenso umfasst wie Aggression und Impulsivität (Lesch et al., 2003). In der vorliegenden Arbeit wurden im Sinne eines Kandidatengenansatzes zwei Assoziationsstudien durchgeführt. Im ersten Teil wurde versucht, eine mögliche Assoziation zwischen der Erkrankung an affektiven Störungen und drei vorbeschriebenen SNPs des FEV-Gens aufzudecken. FEV ist das humane Homolog des in mehreren Tierversuchen untersuchten Pet-1-Gens, dem vor allem eine zentrale Bedeutung in der embryonalen Entwicklung des serotonergen Systems zugeschrieben wird. Zusätzlich wurde ein 286 bp langer Abschnitt des Exon 3 sequenziert, um die Häufigkeit der sieben in diesem Abschnitt beschriebenen SNPs bei unipolar depressiven Patienten abzuschätzen und ggf. neue Varianten zu detektieren. Der zweite Teil untersuchte das Auftreten zweier bereits von anderen Autoren beschriebener SNPs des TPH2-Gen bei an der adulten Form des ADHS leidenden Patienten im Vergleich zu einer Kontrollgruppe. Die im zentralen serotonergen System dominierende Tryptophanhydroxylase 2 (TPH2) ist das erste, geschwindigkeitsbegrenzende Enzym der Serotonin-Biosynthese. Die Genotypisierung der einzelnen SNPs erfolgte mit unterschiedlichen Methoden. So kam sowohl die PCR, der Restriktionsenzymverdau, die Minisequenzierung (SNaPshot®) als auch die MALDI-ToF Massenspektrometrie und die Sequenzierung zum Einsatz, die Auftrennung einzelner Schnittprodukte erfolgte durch die Gelelektrophorese. Die erste Stichprobe umfasste 270 Patienten (davon 179 weiblich) mittleren Alters mit einer Diagnose aus dem affektiven Formenkreis (180 mit bipolar-affektiver Störung gemäß den DSM-IV Kriterien, weitere 90 Patienten mit einer rezidivierenden unipolaren depressiven Störung) sowie 362 (davon 174 weibliche) Kontrollpersonen. Die Stichproben der zweiten Studie umfassten 284 am adulten ADHS (Diagnose nach DSM IV) leidende Patienten (140 davon weiblich) und 120 Kontrollpersonen (61 davon weiblich). Statistisch wurden die Daten sowohl auf Einzelmarker- als auch auf Haplotypniveau ausgewertet. In beiden Studien konnte keine Assoziation der untersuchten Polymorphismen des FEV- bzw. TPH2-Gens mit der jeweiligen Erkrankung (affektive Störung / adultes ADHS), weder auf Einzelmarker- noch auf Haplotypniveau, nachgewiesen werden. Die Sequenzierung des 286 bp langen Abschnitts von Exon 3 des FEV-Gens zeigt eine ausgeprägte Konservierung der Sequenz dieses Gens, wie sie auch von anderen Autoren beschrieben wurde. Die hier untersuchten Kandidatengene FEV und TPH2 sind auch weiterhin interessante Ansatzpunkte für die psychiatrische Grundlagenforschung. Die Aufklärung der genauen Wirkungsweise von FEV und seine Rolle in der Entwicklung des menschlichen serotonergen Systems erscheint jedoch vordergründig, um zunächst Funktion, Interaktionen und mögliche pathogenetische Mechanismen aufzudecken und dann gezielter die Einflüsse bestimmter Polymorphismen zu untersuchen. N2 - Since decades, the serotonergic system is one major focus of basic research in psychiatry. The widely branched serotonergic network is thought to have global-modulatory impact on diverse brain regions and transmitter systems (Hüther & Rüther, 2000). Moreover, serotonergic neurotransmission plays a key modulatory role in emotional behavior, including for example fear, anxiety, aggression and impulsivity (Lesch et al., 2003). Within the present manuscript, two association studies focussing on two candidate genes of the serotonergic system are presented. The first study aimed at investigating the association between affective disorders and three previously described SNPs of the FEV gene. FEV is considered the human homolog of the murine Pet-1-gene and has been suggested to be of key importance for the embryonic development of the serotonergic system. In addition, the study aimed at detecting new variants, and therefore assessed the frequency of seven new SNPs located on a 286 bp long part of the Exon 3, and tested for their association with unipolar depressive disorder. The second study aimed to compare the frequency of two previously described SNPs of the TPH2- gene between a sample of adult ADHD patients and a sample of healthy controls. TPH2 is thought to be the dominating speed reducing enzyme to central serotonergic biosynthesis. While genotyping of the respective SNPs was done using different methods, i.e. PCR, restriction enzyme digest, SNaPshot®, MALDI-ToF mass spectrometry as well as sequencing, all cleavage products were separated using gel-electrophoresis. The first studies‘ sample consisted of N=270 middle-aged patients (179 female) diagnosed for affective disorders according to DSM-IV criteria (i.e. n=180 bipolar disorder, n=90 unipolar depression), and N=362 (174 female) healthy controls. Within the second study, N=284 patients suffering from adult ADHD (140 female) and 120 healthy controls (61 female) were investigated. Data within both studies have been analyzed for single-marker as well as for haplotype associations. In both studies, no associations between the polymorphisms under investigation and the respective disorders were found (neither on the single-marker nor on the haplotype level). In accordance with previous reports, a marked conservation of a section of the Exon 3 sequence (286 bp) of the FEV gene was found. Although both candidate genes (FEV, TPH2) are of further interest for basic research into Psychiatry, unraveling the role of FEV in the development of the human serotonergic system seems to be of primary importance. Once the functional associations, interactions and pathogenic mechanisms have been discovered, future research might be able to more specifically target the role of single polymorphisms within the serotonergic network. KW - Serotonin KW - ADHD KW - affective disorders KW - gene KW - Serotonerges System KW - Gen Polymorphismen KW - affektive Störungen KW - adultes ADHS KW - Assoziationsstudie KW - association study KW - gene polmorphism KW - TPH2 gene KW - FEV gene KW - adult ADHD Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-166952 ER - TY - JOUR A1 - Böhm, Johann A1 - Vasli, Nasim A1 - Maurer, Marie A1 - Cowling, Belinda A1 - Shelton, G. Diane A1 - Kress, Wolfram A1 - Toussaint, Anne A1 - Prokic, Ivana A1 - Schara, Ulrike A1 - Anderson, Thomas James A1 - Weis, Joachim A1 - Tiret, Laurent A1 - Laporte, Jocelyn T1 - Altered Splicing of the BIN1 Muscle-Specific Exon in Humans and Dogs with Highly Progressive Centronuclear Myopathy JF - PLOS Genetics N2 - Amphiphysin 2, encoded by BIN1, is a key factor for membrane sensing and remodelling in different cell types. Homozygous BIN1 mutations in ubiquitously expressed exons are associated with autosomal recessive centronuclear myopathy (CNM), a mildly progressive muscle disorder typically showing abnormal nuclear centralization on biopsies. In addition, misregulation of BIN1 splicing partially accounts for the muscle defects in myotonic dystrophy (DM). However, the muscle-specific function of amphiphysin 2 and its pathogenicity in both muscle disorders are not well understood. In this study we identified and characterized the first mutation affecting the splicing of the muscle-specific BIN1 exon 11 in a consanguineous family with rapidly progressive and ultimately fatal centronuclear myopathy. In parallel, we discovered a mutation in the same BIN1 exon 11 acceptor splice site as the genetic cause of the canine Inherited Myopathy of Great Danes (IMGD). Analysis of RNA from patient muscle demonstrated complete skipping of exon 11 and BIN1 constructs without exon 11 were unable to promote membrane tubulation in differentiated myotubes. Comparative immunofluorescence and ultrastructural analyses of patient and canine biopsies revealed common structural defects, emphasizing the importance of amphiphysin 2 in membrane remodelling and maintenance of the skeletal muscle triad. Our data demonstrate that the alteration of the muscle-specific function of amphiphysin 2 is a common pathomechanism for centronuclear myopathy, myotonic dystrophy, and IMGD. The IMGD dog is the first faithful model for human BIN1-related CNM and represents a mammalian model available for preclinical trials of potential therapies. KW - linked myotubular myopathy KW - skeletal muscle KW - inherited myopathy KW - SH3 domain KW - amphiphysin-2 BIN1 KW - membrane curvature KW - tumor-suppressor KW - great dane KW - mutation KW - gene Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-127590 SN - 1553-7404 VL - 9 IS - 6 ER - TY - JOUR A1 - Cerezo-Echevarria, Argiñe A1 - Kehl, Alexandra A1 - Beitzinger, Christoph A1 - Müller, Tobias A1 - Klopfleisch, Robert A1 - Aupperle-Lellbach, Heike T1 - Evaluating the histologic grade of digital squamous cell carcinomas in dogs and copy number variation of KIT Ligand — a correlation study JF - Veterinary Sciences N2 - Dark-haired dogs are predisposed to the development of digital squamous cell carcinoma (DSCC). This may potentially suggest an underlying genetic predisposition not yet completely elucidated. Some authors have suggested a potential correlation between the number of copies KIT Ligand (KITLG) and the predisposition of dogs to DSCC, containing a higher number of copies in those affected by the neoplasm. In this study, the aim was to evaluate a potential correlation between the number of copies of the KITLG and the histological grade of malignancy in dogs with DSCC. For this, 72 paraffin-embedded DSCCs with paired whole blood samples of 70 different dogs were included and grouped according to their haircoat color as follow: Group 0/unknown haircoat color (n = 11); Group 1.a/black non-Schnauzers (n = 15); group 1.b/black Schnauzers (n = 33); group 1.c/black and tan dogs (n = 7); group 2/tan animals (n = 4). The DSCCs were histologically graded. Additionally, KITLG Copy Number Variation (CNV) was determined by ddPCR. A significant correlation was observed between KITLG copy number and the histological grade and score value. This finding may suggest a possible factor for the development of canine DSCC, thus potentially having an impact on personalized veterinary oncological strategies and breeding programs. KW - canine KW - cancer KW - toe KW - grading KW - haircoat KW - color KW - genetics KW - gene Y1 - 2023 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-304824 SN - 2306-7381 VL - 10 IS - 2 ER - TY - THES A1 - Cremer, Nicole T1 - Genexpression bei der Alzheimer Demenz und dem Morbus Parkinson T1 - Gene expression in Alzheimer Dementia and Parkinson Diseasse N2 - Die Alzheimer Demenz und der Morbus Parkinson als häufigste neurodegenerative Erkrankungen führen zu schwerer Behinderung, zu Pflegebedürftigkeit und meist über Komplikationen zum Tod. Ihr langer Verlauf stellt für Betroffene, Angehörige sowie für das Gesundheitssystem eine enorme Belastung dar. Da die Ätiologie der Alzheimer Demenz und des Morbus Parkinson sowie der meisten neurodegenerativen Krankheiten im Einzelnen nicht bekannt sind und phänotypische Überschneidungen auftreten, sind die Möglichkeiten der eindeutigen Diagnosestellung häufig eingeschränkt oder erst postmortal möglich. Um eine Therapie bei Auftreten der ersten klinischen Symptome zu beginnen oder eine Voraussage der Erkrankungen zu ermöglichen, ist eine sensitive und validierte Frühdiagnostik nötig. Ziel der vorliegenden Arbeit war deshalb, auf der Genebene potentielle pathogenetische Verbindungen, mögliche diagnostische Markerproteine sowie Zusammenhänge zum zeitlichen Verlauf beider Krankheiten zu identifizieren. Dafür wurde mit der Real-Time Polymerasekettenreaktion die Expression von 44 Genen anhand von post mortem Gehirngewebe von Patienten mit Alzheimer Demenz, Morbus Parkionson im Vergleich zu Gesunden aus den vier Hirnregionen Hippocampus, Gyrus frontalis medialis, Gyrus temporalis medialis und Kleinhirn untersucht. Im Resultat zeigen die Gene mit einer statistisch signifikant veränderten Expression, z. B. Glutamattransporter, olfaktorische Rezeptoren oder vakuoläre Sortierungsproteine, bei beiden Erkrankungen gehäuft gleichsinnige Änderungen. Anhand dieser Ergebnisse ist eine kausale Verknüpfung des veränderten Genmetabolismus mit der ablaufenden Neurodegeneration zu vermuten. Zusätzlich wird die Hypothese gemeinsamer pathogenetischer Mechanismen beider Erkrankungen untermauert. Zusammenhänge der Genexpression zum zeitlichen Verlauf der Erkrankungen werden nur vereinzelt belegt, bekräftigten dann aber die Annahme einer Assoziation zu den degenerativen Prozessen. Die Identifizierung eines spezifischen Biomarkers für eine der beiden Erkrankungen war ein Ziel der vorliegenden Arbeit. Aufgrund seiner Expressionsänderung im Hippocampus bei Patienten mit Alzheimer Demenz könnte das BACE1-Gen (Beta site APP cleaving enzyme 1), das dort eine signifikante Expressionsabnahme zeigt, als solcher für dieses Patientenkollektiv diskutiert werden. Die häufig in dieser Arbeit im Hippocampus detektierten, signifikanten Expressionsänderungen, weisen zudem auf eine besondere Affektion dieser Hirnregion bei der Alzheimer Demenz als auch beim Morbus Parkinson hin. Des Weiteren werden in der vorliegenden Arbeit im Kleinhirn, einer Hirnregion, in der bei beiden Erkrankungen scheinbar kaum oder keine pathologischen Prozesse ablaufen, gehäuft und dann ähnliche Änderungen der Genexpression gemessen, die für eine Beteiligung des Kleinhirns bei beiden Krankheiten sprechen, deren Bedeutung bislang unklar ist. N2 - Alzheimer dementia and Parkinson disease are the most common neurodegenerative diseases. They lead to severe disability and mostly cause death through secondary complications. Their long latency is a big burden for the patients, their families and the health care system. The etiology of the most neurodegenerative diseases including Alzheimer dementia and Parkinson disease is largely unknown and there are phenotypical overlaps that limit the diagnostic options. Sensitive and validated diagnostic tools are necessary to start the appropriate therapy early and to make meaningful predictions. This thesis aims to find genes which can act as diagnostic marker proteins, show pathogenetic commonalities and potential correlations to the chronological sequence of the described diseases. 44 genes were analysed with real time polymerase chain reaction of post mortal tissue of the temporal and frontal cortex, the hippocampus and cerebellum from patients with Alzheimer dementia and Parkinson disease compared to a control group. Genes with statistical significant changes in expression between test subjects and controls as the olfactory receptor gene, the glutamate transporter gene or the vacuolar sorting protein gene often show similar changes in both diseases. These results show a connection between the changed gene expression and the progress of the neurodegenerative process in both diseases. In addition these results support the theory of common pathogenetic pathways in both diseases. Correlations to the chronological sequence of both diseases were confirmed just in individual cases but corroborate the connection to the ongoing neurodegenerative process. Furthermore this thesis aims to identify a diagnostic biological marker. Due to the expression profile of the BACE1 gene in the hippocampus of patients with Alzheimer dementia this gene can be seen as a potential biological marker for this group of patients. The frequently measured changes of gene expression profiles in the hippocampus show the particular significance of this brain region in the Alzheimer dementia and Parkinson disease. Furthermore this thesis shows numerous and similar changes of gene expression profiles for both diseases in the cerebellum, a region which demonstrates nearly no pathological processes in Alzheimer dementia and Parkinson disease. The significance of the findings is yet unknown and requires further research. KW - Alzheimer KW - Demenz KW - Parkinson KW - Genexpression KW - Alzheimer-Krankheit KW - Demenz KW - Parkinson-Krankheit KW - Differentielle Genexpression KW - Genanalyse KW - Gen KW - Alzheimer KW - dementia KW - Parkinson KW - gene KW - gene expression KW - gene analysis KW - Parkinson disease KW - Alzheimer disease Y1 - 2012 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-76748 ER - TY - JOUR A1 - Eberhardt, Christiane S. A1 - Haas, Johannes-Peter A1 - Girschick, Hermann A1 - Schwarz, Tobias A1 - Morbach, Henner A1 - Rösen-Wolff, Angela A1 - Foell, Dirk A1 - Dannecker, Guenther A1 - Schepp, Carsten A1 - Ganser, Gerd A1 - Honke, Nora A1 - Eggermann, Thomas A1 - Müller-Berghaus, Jan A1 - Wagner, Norbert A1 - Ohl, Kim A1 - Tenbrock, Klaus T1 - No association of IL-12p40 pro1.1 polymorphism with juvenile idiopathic arthritis JF - Pediatric Rheumatology N2 - Background: IL-12p40 plays an important role in the activation of the T-cell lines like Th17 and Th1-cells. Theses cells are crucial in the pathogenesis of juvenile idiopathic arthritis. A polymorphism in its promoter region and the genotype IL12p40 pro1.1 leads to a higher production of IL-12p40. We studied whether there is a difference in the distribution of the genotype in patients with JIA and the healthy population. Methods: In 883 patients and 321 healthy controls the IL-12p40 promoter genotype was identified by ARMS-PCR. Results: There is no association of IL-12p40 pro polymorphism neither in patients with JIA compared to controls nor in subtypes of JIA compared to oligoarthritis. We found a non-significant tendency of a higher prevalence of the genotype pro1.1 in systemic arthritis (32.4 %) and in rheumatoid factor negative polyarthritis (30.5 %) and a lower pro1.1 genotype in persistent oligoarthritis (20.7 %) and in enthesitis-related arthritis (17 %). Likelihood of the occurrence of genotype IL12-p40 pro1.1 in patients with systemic arthritis (OR 1.722, CI 95 % 1.344-2.615, p 0.0129) and RF-negative polyarthritis (OR 1.576, CI 95 % 1.046-2.376, p 0.0367) compared to persistent oligoarthritis was significantly higher. This was also true for comparison of their homozygous genotypes IL-12p40 pro 1.1 and 2.2 in systemic arthritis (OR 1.779, CI 95 % 1.045-3.029, p 0.0338). However, in Bonferroni correction for multiple hypothesis this was not significant. Conclusion: A tendency of a higher prevalence of the genotype IL-12p40 pro1.1 in systemic arthritis and in rheumatoid factor negative polyarthritis was observed but not significant. Further investigations should be done to clarify the role IL-12p40 in the different subtypes of JIA. KW - polymorphism KW - cytokine KW - children KW - serum KW - IL12B KW - gene KW - cells KW - juvenile idiopathic arthritis KW - IL-12p40 KW - IL-12B KW - promoter Y1 - 2015 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-136281 VL - 13 IS - 61 ER - TY - JOUR A1 - Fagan, Jeremy K. A1 - Dollar, Gretchen A1 - Lu, Qiuheng A1 - Barnett, Austen A1 - Jorge, Joaquin Pechuan A1 - Schlosser, Andreas A1 - Pfleger, Cathie A1 - Adler, Paul A1 - Jenny, Andreas T1 - Combover/CG10732, a Novel PCP Effector for Drosophila Wing Hair Formation JF - PLOS ONE N2 - The polarization of cells is essential for the proper functioning of most organs. Planar Cell Polarity (PCP), the polarization within the plane of an epithelium, is perpendicular to apical-basal polarity and established by the non-canonical Wnt/Fz-PCP signaling pathway. Within each tissue, downstream PCP effectors link the signal to tissue specific readouts such as stereocilia orientation in the inner ear and hair follicle orientation in vertebrates or the polarization of ommatidia and wing hairs in Drosophila melanogaster. Specific PCP effectors in the wing such as Multiple wing hairs (Mwh) and Rho Kinase (Rok) are required to position the hair at the correct position and to prevent ectopic actin hairs. In a genome-wide screen in vitro, we identified Combover (Cmb)/CG10732 as a novel Rho kinase substrate. Overexpression of Cmb causes the formation of a multiple hair cell phenotype (MHC), similar to loss of rok and mwh. This MHC phenotype is dominantly enhanced by removal of rok or of other members of the PCP effector gene family. Furthermore, we show that Cmb physically interacts with Mwh, and cmb null mutants suppress the MHC phenotype of mwh alleles. Our data indicate that Cmb is a novel PCP effector that promotes to wing hair formation, a function that is antagonized by Mwh. KW - planar cell polarity KW - RHO-associated kinease KW - convergent extension movements KW - ROK-alpha KW - protein KW - phosphorylation KW - actin KW - gene KW - morphogenesis KW - localization Y1 - 2014 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-115394 SN - 1932-6203 VL - 9 IS - 9 ER - TY - JOUR A1 - Gabellini, N. A1 - Harnisch, U. A1 - McCarthy, J. E. A1 - Hauska, G. A1 - Sebald, Walter T1 - Cloning and expression of the fbc operon encoding the FeS protein, cytochrome b and cytochrome c\(_1\) from the Rhodopseudomonas sphaeroides b/c\(_1\) complex N2 - The gene for the FeS protein of the Rhodopseudomonas sphaeroides b/c1 complex was identified by means of crosshybridization with a segment of the gene encoding the corresponding FeS protein of Neurospora crassa. Plasmids (pRSF1-14) containing the cross-hybridizing region, covering in total 13.5 kb of chromosomal DNA, were expressed in vitro in a homologous system. One RSF plasmid directed the synthesis of all three main polypeptides of the R. sphaeroides blc1 complex: the FeS protein, cytochrome b and cytochrome c1• The FeS protein and cytochrome c1 were apparently synthesized as precursor fonns. None of the pRSF plasmids directed the synthesis of the 10-kd polypeptide found in b/c1 complex preparations. Partial sequencing of the cloned region was performed. Several sites of strong homology between R. sphaeroides and eukaryotic polypeptides of the b/c1 complex were identified. The genes encode the three b/c1 polypeptides in the order: (5') FeS protein, cytochrome b, cytochrome c1• The three genes are transcribed to give a polycistronic mRNA of 2.9 kb. This transcriptional unit has been designated the jbc operon; its coding capacity corresponds to the size of the polycistronic mRNA assuming that only the genes for the FeS protein (jbcF), cytochrome b (jbcß) and cytochrome c1 (jbcC) are present. This could indicate that these three subunits constitute the minimal catalytic unit of the b/c1 complex from photosynthetic membranes. KW - Biochemie KW - R. sphaeroidesl KW - b/c1 complex KW - gene KW - cloning KW - in vitro expression KW - polycistronic mRNA Y1 - 1985 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-62642 ER - TY - JOUR A1 - Gaiser, Timo A1 - Geissinger, Eva A1 - Schattenberg, Torsten A1 - Scharf, Hanns-Peter A1 - Dürken, Matthias A1 - Dinter, Dietmar A1 - Rosenwald, Andreas A1 - Marx, Alexander T1 - Case report: a unique pediatric case of a primary CD8 expressing ALK-1 positive anaplastic large cell lymphoma of skeletal muscle JF - Diagnostic Pathology N2 - Primary involvement of skeletal muscle is a very rare event in ALK-1 positive anaplastic large cell lymphoma (ALCL). We describe a case of a 10-year old boy presenting with a three week history of pain and a palpable firm swelling at the dorsal aspect of the left thigh. Histological examination of the lesion revealed a tumoral and diffuse polymorphic infiltration of the muscle by large lymphoid cells. Tumor cells displayed eccentric, lobulated "horse shoe" or "kidney-shape" nuclei. The cells showed immunohistochemical positivity for CD30, ALK-1, CD2, CD3, CD7, CD8, and Perforin. Fluorescence in situ hybridization analysis revealed a characteristic rearrangement of the ALK-1 gene in 2p23 leading to the diagnosis of ALK-1 positive ALCL. Chemotherapy according to the ALCL-99-NHL-BFM protocol was initiated and resulted in a complete remission after two cycles. This case illustrates the unusual presentation of a pediatric ALCL in soft tissue with a good response to chemotherapy. KW - pediatric lymphoma KW - psoas muscle KW - classification KW - translocation KW - features KW - gene KW - ALK-1 KW - anaplastic large cell lymphoma KW - CD30 Y1 - 2012 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-135381 VL - 7 IS - 38 ER - TY - JOUR A1 - García-Martínez, Jorge A1 - Brunk, Michael A1 - Avalos, Javier A1 - Terpitz, Ulrich T1 - The CarO rhodopsin of the fungus Fusarium fujikuroi is a light-driven proton pump that retards spore germination JF - Scientific Reports N2 - Rhodopsins are membrane-embedded photoreceptors found in all major taxonomic kingdoms using retinal as their chromophore. They play well-known functions in different biological systems, but their roles in fungi remain unknown. The filamentous fungus Fusarium fujikuroi contains two putative rhodopsins, CarO and OpsA. The gene carO is light-regulated, and the predicted polypeptide contains all conserved residues required for proton pumping. We aimed to elucidate the expression and cellular location of the fungal rhodopsin CarO, its presumed proton-pumping activity and the possible effect of such function on F. fujikuroi growth. In electrophysiology experiments we confirmed that CarO is a green-light driven proton pump. Visualization of fluorescent CarO-YFP expressed in F. fujikuroi under control of its native promoter revealed higher accumulation in spores (conidia) produced by light-exposed mycelia. Germination analyses of conidia from carO\(^{-}\) mutant and carO\(^{+}\) control strains showed a faster development of light-exposed carO-germlings. In conclusion, CarO is an active proton pump, abundant in light-formed conidia, whose activity slows down early hyphal development under light. Interestingly, CarO-related rhodopsins are typically found in plant-associated fungi, where green light dominates the phyllosphere. Our data provide the first reliable clue on a possible biological role of a fungal rhodopsin. KW - microbial rhodopsins KW - intracellular pH KW - membrane proteins KW - mutants KW - virulence KW - channelrhodopsin-2 KW - growth KW - gene KW - expression KW - bacteriorhodopsin Y1 - 2015 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-149049 VL - 5 IS - 7798 ER - TY - JOUR A1 - Geyer, Kathrin K. A1 - Chalmers, Iain W. A1 - MacKintosh, Neil A1 - Hirst, Julie E. A1 - Geoghegan, Rory A1 - Badets, Mathieu A1 - Brophy, Peter M. A1 - Brehm, Klaus A1 - Hoffmann, Karl F. T1 - Cytosine methylation is a conserved epigenetic feature found throughout the phylum Platyhelminthes JF - BMC Genomics N2 - Background: The phylum Platyhelminthes (flatworms) contains an important group of bilaterian organisms responsible for many debilitating and chronic infectious diseases of human and animal populations inhabiting the planet today. In addition to their biomedical and veterinary relevance, some platyhelminths are also frequently used models for understanding tissue regeneration and stem cell biology. Therefore, the molecular (genetic and epigenetic) characteristics that underlie trophic specialism, pathogenicity or developmental maturation are likely to be pivotal in our continued studies of this important metazoan group. Indeed, in contrast to earlier studies that failed to detect evidence of cytosine or adenine methylation in parasitic flatworm taxa, our laboratory has recently defined a critical role for cytosine methylation in Schistosoma mansoni oviposition, egg maturation and ovarian development. Thus, in order to identify whether this epigenetic modification features in other platyhelminth species or is a novelty of S. mansoni, we conducted a study simultaneously surveying for DNA methylation machinery components and DNA methylation marks throughout the phylum using both parasitic and non-parasitic representatives. Results: Firstly, using both S. mansoni DNA methyltransferase 2 (SmDNMT2) and methyl-CpG binding domain protein (SmMBD) as query sequences, we illustrate that essential DNA methylation machinery components are well conserved throughout the phylum. Secondly, using both molecular (methylation specific amplification polymorphism, MSAP) and immunological (enzyme-linked immunoabsorbent assay, ELISA) methodologies, we demonstrate that representative species (Echinococcus multilocularis, Protopolystoma xenopodis, Schistosoma haematobium, Schistosoma japonicum, Fasciola hepatica and Polycelis nigra) within all four platyhelminth classes (Cestoda, Monogenea, Trematoda and 'Turbellaria') contain methylated cytosines within their genome compartments. Conclusions: Collectively, these findings provide the first direct evidence for a functionally conserved and enzymatically active DNA methylation system throughout the Platyhelminthes. Defining how this epigenetic feature shapes phenotypic diversity and development within the phylum represents an exciting new area of metazoan biology. KW - methyltransferase homolog KW - echinococcus multilocularis KW - platyhelminthes KW - 5-methyl cytosine KW - gene KW - proteins KW - stem cells KW - maximum liklihood KW - schistoma mansoni KW - flatworm KW - CPG binding domain KW - DNA methylation KW - epgenetics KW - complex Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-121892 SN - 1471-2164 VL - 14 IS - 462 ER -