TY  - JOUR
A1  - Dembek, Marcin
A1  - Barquist, Lars
A1  - Boinett, Christine J.
A1  - Cain, Amy K.
A1  - Mayho, Matthew
A1  - Lawley, Trevor D.
A1  - Fairweather, Neil F.
A1  - Fagan, Robert P.
T1  - High-throughput analysis of gene essentiality and sporulation in Clostridium difficile
JF  - mBio
N2  - Clostridium difficile is the most common cause of antibiotic-associated intestinal infections and a significant cause of morbidity and mortality. Infection with C. difficile requires disruption of the intestinal microbiota, most commonly by antibiotic usage. Therapeutic intervention largely relies on a small number of broad-spectrum antibiotics, which further exacerbate intestinal dysbiosis and leave the patient acutely sensitive to reinfection. Development of novel targeted therapeutic interventions will require a detailed knowledge of essential cellular processes, which represent attractive targets, and species-specific processes, such as bacterial sporulation. Our knowledge of the genetic basis of C. difficile infection has been hampered by a lack of genetic tools, although recent developments have made some headway in addressing this limitation. Here we describe the development of a method for rapidly generating large numbers of transposon mutants in clinically important strains of C. difficile. We validated our transposon mutagenesis approach in a model strain of C. difficile and then generated a comprehensive transposon library in the highly virulent epidemic strain R20291 (027/BI/NAP1) containing more than 70,000 unique mutants. Using transposon-directed insertion site sequencing (TraDIS), we have identified a core set of 404 essential genes, required for growth in vitro. We then applied this technique to the process of sporulation, an absolute requirement for C. difficile transmission and pathogenesis, identifying 798 genes that are likely to impact spore production. The data generated in this study will form a valuable resource for the community and inform future research on this important human pathogen.
KW  - Bacillus subtilis
KW  - expression
KW  - spores
KW  - toxin
KW  - transcription
KW  - germination
KW  - transposition
KW  - metabolism
KW  - infection
KW  - in vitro
Y1  - 2015
U6  - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-143745
VL  - 6
IS  - 2
ER  -