TY - THES A1 - Gareiß, Barbara T1 - Einfluss niedermolekularer Protein-Tyrosin-Phosphatasen von Listeria monocytogenes auf die listerielle Genexpression und Virulenz T1 - Influence of low molecular weight protein tyrosine phosphatases of Listeria monocytogenes on the listerial gene expression and virulence N2 - Im Genom von Listeria monocytogenes konnten zwei Gene identifiziert werden, die mutmaßlich für niedermolekulare Protein-Tyrosin Phosphatasen (LMW-PTPs) kodieren, Lmo0938/Ptp-1 und Lmo2540/Ptp-2, beide ähneln LMW-PTPs von B. subtilis. Einzel- und Doppeldeletionen der ptp-Gene beeinflussten die Transkription zahlreicher Gene, wie anhand von Gesamtgenom-DNA-Microarray-Analysen und quantitativer RT-PCR gezeigt werden konnten. Insbesondere waren die Gene für i) die Internaline A und B, ii) den Osmoprotektanten-Transporter OpuC, iii) MCP, notwendig zur Flagellen-Bewegung und iv) eine Anzahl von den Proteinen, die in die Nährstoffaufnahme sowie den intrazellulären Metabolismus involviert sind, in vitro herunterreguliert. Die PrfA-regulierten Virulenzgene wurden in den Mutanten verstärkt exprimiert. Im Wesentlichen konnte das gleiche Transkriptionsmuster in infizierten Caco-2-Enterocyten beobachtet werden. Die verringerte Invasivität (abhängig von InlA) und die Unbeweglichkeit der Mutanten passt zu den Transkriptionsergebnissen. Jedoch wurden weder die intrazelluläre Replikation innerhalb eukaryontischer Wirtszellen noch die Resistenz gegen Stressbedingungen durch die Deletion beeinträchtigt. Die Proteome des Wildtyps und der ptp-Mutanten wurden durch 2-dimensionale Gelelektrophorese verglichen und es zeigte sich, dass die Transkriptionsergebnisse nicht vollständig im Proteom reflektiert wurden. Die Ergebnisse zeigen, dass die Ptps in die Regulationsnetzwerke des alternativen Stress-Sigmafaktor SigB und von PrfA eingreifen. Der ähnliche Effekt beider Ptps auf die Transkription oder auf den Proteinlevel deutet eine Interaktion oder Kooperation der beiden Enzyme an. N2 - In the genome of Listeria monocytogenes we identified two genes putatively encoding low molecular weight protein-tyrosine phosphatases (LMW PTPs), Lmo0938/Ptp-1 and Lmo2540/Ptp-2, similar to LMW PTPS of B. subtilis and S. aureus. Single and double deletions of the ptp genes affected transcription of numerous genes, shown by whole-genome DNA-microarray analysis and quantitative RT-PCR. In particular the genes for i) the internalins AB, ii) the osmoprotectant uptake system OpuC, iii) MCP, important for flagellar motion, and iv) a number of proteins involved in nutrient uptake and intracellular metabolism, were down regulated in vitro. The PrfA-regulated virulence genes were up regulated in the mutants. Essentially the same transcription pattern was observed in infected Caco-2 enterocytes. The decreased invasiveness (dependent on InlA) and non-motility of the mutants matches the transcription results. However, neither replication within eukaryotic host cells nor resistance against stress conditions was impaired by the deletions. The proteomes of wild type and Ptp-mutants were compared by 2-D-protein gel electrophoresis, surprisingly showing that the transcription results were not completely reflected in the proteome. The results show that the Ptps interfere with the stress sigma factor SigB and PrfA regulatory networks. The similar effect of both Ptps on transcription or on protein level suggests an interaction or cooperation of the two enzymes. KW - Listeria monocytogenes KW - Genexpression KW - Proteintyrosinphosphatase KW - Listeria monocytogenes KW - niedermolekulare Protein-Tyrosin-Phosphatasen KW - Transkriptionsregulation KW - Proteom KW - Invasion KW - Listeria monocytogenes KW - low molecular weight protein tyrosine phosphatase KW - transcription regulation KW - proteome KW - invasion Y1 - 2006 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-19853 ER - TY - JOUR A1 - Balkenhol, Johannes A1 - Kaltdorf, Kristin V. A1 - Mammadova-Bach, Elmina A1 - Braun, Attila A1 - Nieswandt, Bernhard A1 - Dittrich, Marcus A1 - Dandekar, Thomas T1 - Comparison of the central human and mouse platelet signaling cascade by systems biological analysis JF - BMC Genomics N2 - Background Understanding the molecular mechanisms of platelet activation and aggregation is of high interest for basic and clinical hemostasis and thrombosis research. The central platelet protein interaction network is involved in major responses to exogenous factors. This is defined by systemsbiological pathway analysis as the central regulating signaling cascade of platelets (CC). Results The CC is systematically compared here between mouse and human and major differences were found. Genetic differences were analysed comparing orthologous human and mouse genes. We next analyzed different expression levels of mRNAs. Considering 4 mouse and 7 human high-quality proteome data sets, we identified then those major mRNA expression differences (81%) which were supported by proteome data. CC is conserved regarding genetic completeness, but we observed major differences in mRNA and protein levels between both species. Looking at central interactors, human PLCB2, MMP9, BDNF, ITPR3 and SLC25A6 (always Entrez notation) show absence in all murine datasets. CC interactors GNG12, PRKCE and ADCY9 occur only in mice. Looking at the common proteins, TLN1, CALM3, PRKCB, APP, SOD2 and TIMP1 are higher abundant in human, whereas RASGRP2, ITGB2, MYL9, EIF4EBP1, ADAM17, ARRB2, CD9 and ZYX are higher abundant in mouse. Pivotal kinase SRC shows different regulation on mRNA and protein level as well as ADP receptor P2RY12. Conclusions Our results highlight species-specific differences in platelet signaling and points of specific fine-tuning in human platelets as well as murine-specific signaling differences. KW - interspecies comparison KW - transcriptome KW - proteome KW - platelet KW - network KW - signaling KW - mouse KW - human KW - interactome KW - cascade Y1 - 2020 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-230377 VL - 21 ER -