TY - JOUR A1 - Zonneveld, Ben J. M. T1 - The DNA weights per nucleus (genome size) of more than 2350 species of the Flora of The Netherlands, of which 1370 are new to science, including the pattern of their DNA peaks JF - Forum Geobotanicum N2 - Besides external characteristics and reading a piece of DNA (barcode), the DNA weight per nucleus (genome size) via flow cytometry is a key value to detect species and hybrids and determine ploidy. In addition, the DNA weight appears to be related to various properties, such as the size of the cell and the nucleus, the duration of mitosis and meiosis and the generation time. Sometimes it is even possible to distinguish between groups or sections, which can lead to new classification of the genera. The variation in DNA weight is also useful to analyze biodiversity, genome evolution and relationships between related taxa. Moreover, it is important to know how large a genome is before one determines the base sequence of the DNA of a plant. Flow cytometry is also important for understanding fundamental processes in plants such as growth and development and recognizing chimeras. In the literature, DNA weight measurements are usually limited to one genus and often only locally (Siljak et al. 2010; Bai et al. 2012). In this study, however, it was decided to investigate all vascular plants from one country. This can also contribute to the protection of rare plants. This study is the first flora in the world whose weight of DNA per nucleus and peak patterns has been determined. More than 6400 plants, representing more than 2350 (sub)species (more than 90%) have been collected, thanks to the help of almost 100 volunteers of Floristisch Onderzoek Nederland (Floron). Multiple specimens of many species have therefore been measured, preferably from different populations, in some cases more than fifty. For 1370 species, these values were not previously published. Moreover, a good number of the remaining 45% are new for The Netherlands. In principle, each species has a fixed weight of DNA per nucleus. It has also been found that, especially between the genera, there are strong differences in the number of peaks that determine the DNA weight, from one to five peaks. This indicates that in a plant or organ there are sometimes nuclei with multiples of its standard DNA weight (multiple ploidy levels). It is impossible to show graphs of more than 2350 species. Therefore, we have chosen to show the peak pattern in a new way in a short formula. Within most genera there are clear differences in the DNA weights per nucleus between the species, in some other genera the DNA weight is hardly variable. Based on about twenty genera that were previously measured completely in most cases (‘t Hart et al. 2003: Veldkamp and Zonneveld 2011; Soes et al. 2012; Dirkse et al. 2014, 2015; Verloove et al. 2017; Zonneveld [et al.] 2000−2018), it can be noted that even if all species of a genus have the same number of chromosomes, there can still be a difference of up to three times in the weight of the DNA. Therefore, a twice larger DNA weight does not have to indicate four sets of chromosomes. Finally, this research has also found clues to examine further the current taxonomy of a number of species or genera. KW - DNA weight KW - Pflanzen KW - genome KW - flora KW - Netherlands Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-189724 UR - http://www.forum-geobotanicum.net/articles/vol_8-2018/zonneveld_flora-of-the-netherlands/zonneveld_flora-of-the-netherlands.pdf SN - 1867-9315 VL - 8 ER - TY - THES A1 - Zilker, Markus T1 - The stability of finished pharmaceutical products and drug substances beyond their labeled expiry dates T1 - Die Stabilität von Fertigarzneimitteln und Wirkstoffen nach Ablauf des Verfalldatums N2 - Upon approval of a drug, the stability of the API and the FPP has to be studied intensively because it determines the shelf-life. If a drug is found to be stable, the expiry date is arbitrary set to five years at the maximum, if a drug tends to undergo degradation, the expiry date is set shorter. The drug product must comply with predefined specifications in accordance with the ICH guidelines Q6A and Q6B during its entire market life. The content of the active substance is required to be within a specification of 95–105% of its labeled claim until expiry corresponding to the ICH guideline Q1A(R2). However, there is little or scattered literature information addressing the stability of drug products beyond their expiry dates. The objective of this thesis was to study and assess the long-term stability of a collection involving numerous pure drug substances and ampoules manufactured in the 20th century. The content and the impurity profile were examined by means of appropriate analytical methods, mainly using liquid chromatography. The results were compared to data being available in the literature. Assessing the stability regarding the dosage form and the affiliation of the drug class was conducted. The experimental studies comprise the examination of 50 drug substances manufactured 20–30 years ago and 14 long expired ampoules which were older than 40 years in the time of analysis, exceeding many times the maximum shelf life of five years. For investigation of the solid drug substances, pharmacopoeial methods were applied as far as possible. Indeed, results of the study showed that 44 tested substances still complied with the specification of the Ph. Eur. with regard to the content and impurity profile, even after more than two decades of storage. For analysis of the injection solutions, HPLC-UV and HPLC-ESI/MS techniques were applied, commonly based on liquid chromatography methods of the Ph. Eur. for determination of related substances. Each method was further validated for its application to ensure accurate API quantification corresponding to ICH Q2(R1). Quite a few ampoules were identified to show surprisingly high stability. In spite of their age of 53–72 years, APIs such as caffeine, etilefrine, synephrine, metamizole sodium, furosemide, and sodium salicylate complied with the specified content that is valid nowadays, respectively. Nevertheless, typical degradation reaction, e.g. hydrolysis, oxidation, or isomerization, was observed in all remaining ampoules. Various degrees of hydrolysis were revealed for scopolamine, procaine, and adenosine triphosphate, the contents were decreased to 71%, 70%, and 15% of the declared concentrations, respectively. In the epinephrine and dipyridamole ampoules, oxidative degradation has been occurred, finding respective API contents of more or less 70%. For dihydroergotamine, excessive decomposition by epimerization was observed, resulting in an API content of 21% and degradation by isomerization was found in lobeline, still containing 64% of the labeled claim. In conclusion, supported by the data of the present studies and the literature, defining and authorizing a longer shelf-life may be applicable to numerous pharmaceuticals which should be considered by pharmaceutical manufacturers and regulatory authorities, if justified based on stability studies. A general extension of the shelf-lives of drug products and the abolishment or extension of the maximum shelf-life limit of five years would prevent disposing of still potent medications and save a lot of money to the entire health care system. N2 - Bei der Zulassung eines Arzneimittels muss die Stabilität sowohl des Wirkstoffes als auch des Fertigarzneimittels umfassend untersucht werden, da dies für die Festlegung der Haltbarkeit wesentlich ist. Wenn sich herausstellt, dass ein Arzneimittel stabil ist, wird das Verfallsdatum auf höchstens fünf Jahre festgelegt. Neigt ein Arzneimittel zum Abbau, so wird ein kürzeres Verfallsdatum gewählt. Das Arzneimittel muss innerhalb der Haltbarkeitsfrist definierten Spezifikationen entsprechen, welche in den ICH-Richtlinien Q6A und Q6B festgelegt sind. Dabei muss insbesondere der Wirkstoff-Gehalt des Arzneimittels gemäß der ICH-Richtlinie Q1A(R2) innerhalb der Spezifikation von 95–105 % der deklarierten Konzentration liegen. In der Literatur gibt es jedoch wenige Informationen darüber, wie stabil Arzneimittel lange nach Ablauf des Verfallsdatums sind. Das Ziel dieser Arbeit war es, die Stabilität zahlreicher Feststoffe und Ampullen, die aus einer Altarzneimittel-Sammlung stammten und während des 20. Jahrhunderts hergestellt wurden, zu untersuchen und zu bewerten. Der Gehalt und das Verunreinigungsprofil wurden mittels geeigneter instrumenteller Analyseverfahren bestimmt, wobei hauptsächlich flüssigchromatographische Methoden zur Anwendung kamen. Die Untersuchungsergebnisse wurden mit Literaturdaten verglichen und es wurde eine Beurteilung der Stabilität in Abhängigkeit von der Darreichungsform und der Zugehörigkeit zu einer Arzneistoffklasse vorgenommen. Die experimentellen Studien umfassten die Untersuchung von 50 Feststoffen, die vor 20 bis 30 Jahren hergestellt worden waren, und 14 Alt-Ampullen, die ein Alter von mindestens 40 Jahre aufwiesen und damit die maximale Haltbarkeit von fünf Jahren um ein Vielfaches überschritten hatten. Zur Untersuchung der Feststoffe wurden meist Arzneibuchmethoden verwendet. Die Ergebnisse zeigten, dass 44 geprüfte Substanzen auch nach mehr als zwei Jahrzehnten hinsichtlich ihres Gehalts und Verunreinigungsprofils den jeweiligen Spezifikationen des Europäischen Arzneibuchs entsprachen. Zur Analyse der Alt Ampullen wurden HPLC-UV- und HPLC-ESI/MS-Techniken eingesetzt. Diese basierten häufig auf Arzneibuch-Methoden zur Prüfung auf verwandte Substanzen. Für die Gehaltsbestimmungen wurden entsprechend der ICH-Richtlinie Q2(R1) die erforderlichen Parameter validiert. Einige Ampullen zeigten eine überraschend hohe Stabilität des Wirkstoffs, trotz ihres Alters von 53 bis 72 Jahren. Dabei entsprachen die Wirkstoffe Koffein, Etilefrin, Synephrin, Metamizol Natrium, Furosemid und Natriumsalicylat dem heute gültigen Spezifikationsbereich von 95–105 %. Nichtsdestoweniger wurden bei einigen Ampullen typische Abbaureaktionen wie Hydrolyse, Oxidation oder Isomerisierung festgestellt. Die Hydrolyse der Arzneistoffe Scopolamin, Procain und Adenosintriphosphat führte zu verringerten Gehalten von 71 %, 70 % bzw. 15 % der jeweiligen gekennzeichneten Wirkstoffkonzentration. Die Epinephrin- und Dipyridamol-Injektionslösungen waren von oxidativem Abbau betroffen. Der Wirkstoffgehalt dieser Ampullen lag jeweils bei ca. 70 %. In der Dihydroergotamin Ampulle trat eine massive Epimerisierung auf, wobei ein Gehalt von 21 % bestimmt wurde. Aufgrund der Isomerisierung des Arzneistoffes Lobelin reduzierte sich der Wirkstoffgehalt auf 64 %. Als Schlussfolgerung der experimentellen Studien und der verfügbaren Daten aus der Literatur sollten die pharmazeutischen Unternehmer und die Aufsichtsbehörden erwägen, die Haltbarkeitsdauer für zahlreiche Arzneimittel zu verlängern, wenn dies basierend auf Stabilitätsuntersuchungen gerechtfertigt ist. Eine generelle Ausweitung der Verwendbarkeit von Arzneimitteln sowie die Abschaffung oder Erweiterung der maximalen Haltbarkeitsdauer von fünf Jahren würde die Entsorgung noch wirksamer Medikamente verhindern und dem Gesundheitssystem viel Geld einsparen. KW - Stabilität KW - Fertigarzneimittel KW - Wirkstoff KW - Chromatographie KW - Chemical stability KW - Shelf-life KW - Expiry date Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-180695 ER - TY - JOUR A1 - Zhou, Xiang A1 - Wuchter, Patrick A1 - Egerer, Gerlinde A1 - Kriegsmann, Mark A1 - Mataityte, Aiste A1 - Koelsche, Christian A1 - Witzens-Harig, Mathias A1 - Kriegsmann, Katharina T1 - Role of virological serum markers in patients with both hepatitis B virus infection and diffuse large B-cell lymphoma JF - European Journal of Haematology N2 - Background Causality between hepatitis B virus (HBV) infection and diffuse large B-cell lymphoma (DLBCL) was reported in various studies. However, the implication of different virological serum markers of HBV infection in patients with both HBV infection and DLBCL is not fully understood. The aim of this study was to investigate the impact of HBV markers on overall survival (OS) and progression-free survival (PFS) in patients with both HBV infection and DLBCL. Methods In this study, patients (n = 40) diagnosed with both HBV infection and DLBCL were identified between 2000 and 2017. Six patients with hepatitis C virus (HCV) and/or human immunodeficiency virus (HIV) co-infection were excluded from this study. We retrospectively analyzed patients’ demographic characteristics, treatment, and the prognostic impact of different HBV markers at first diagnosis of DLBCL (HBsAg, anti-HBs, HBeAg, anti-HBe, and HBV-DNA) on OS and PFS. Results The majority of patients (n = 21, 62%) had advanced disease stage (III/IV) at diagnosis. In the first-line therapy, 24 patients (70%) were treated with R-CHOP regimen (rituximab, cyclophosphamide, hydroxydaunorubicin, vincristine, and prednisolone). HBeAg positive patients had a trend toward inferior OS and PFS compared with HBeAg negative patients. Anti-HBe positive patients had a statistically significant better OS and PFS compared with anti-HBe negative group (both P < .0001). Viremia with HBV-DNA ≥ 2 × 107 IU/L had a significant negative impact on OS and PFS (both P < .0001). Conclusion High activity of viral replication is associated with a poor survival outcome of patients with both HBV infection and DLBCL. KW - hepatitis B virus KW - diffuse large B-cell lymphoma KW - prognosis Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-258442 VL - 103 IS - 4 ER - TY - JOUR A1 - Zhang, Yonghong A1 - Zheng, Lanlan A1 - Zheng, Yan A1 - Zhou, Chao A1 - Huang, Ping A1 - Xiao, Xiao A1 - Zhao, Yongheng A1 - Hao, Xincai A1 - Hu, Zhubing A1 - Chen, Qinhua A1 - Li, Hongliang A1 - Wang, Xuanbin A1 - Fukushima, Kenji A1 - Wang, Guodong A1 - Li, Chen T1 - Assembly and Annotation of a Draft Genome of the Medicinal Plant Polygonum cuspidatum JF - Frontiers in Plant Science N2 - Polygonum cuspidatum (Japanese knotweed, also known as Huzhang in Chinese), a plant that produces bioactive components such as stilbenes and quinones, has long been recognized as important in traditional Chinese herbal medicine. To better understand the biological features of this plant and to gain genetic insight into the biosynthesis of its natural products, we assembled a draft genome of P. cuspidatum using Illumina sequencing technology. The draft genome is ca. 2.56 Gb long, with 71.54% of the genome annotated as transposable elements. Integrated gene prediction suggested that the P. cuspidatum genome encodes 55,075 functional genes, including 6,776 gene families that are conserved in the five eudicot species examined and 2,386 that are unique to P. cuspidatum. Among the functional genes identified, 4,753 are predicted to encode transcription factors. We traced the gene duplication history of P. cuspidatum and determined that it has undergone two whole-genome duplication events about 65 and 6.6 million years ago. Roots are considered the primary medicinal tissue, and transcriptome analysis identified 2,173 genes that were expressed at higher levels in roots compared to aboveground tissues. Detailed phylogenetic analysis demonstrated expansion of the gene family encoding stilbene synthase and chalcone synthase enzymes in the phenylpropanoid metabolic pathway, which is associated with the biosynthesis of resveratrol, a pharmacologically important stilbene. Analysis of the draft genome identified 7 abscisic acid and water deficit stress-induced protein-coding genes and 14 cysteine-rich transmembrane module genes predicted to be involved in stress responses. The draft de novo genome assembly produced in this study represents a valuable resource for the molecular characterization of medicinal compounds in P. cuspidatum, the improvement of this important medicinal plant, and the exploration of its abiotic stress resistance. KW - genome assembly KW - resveratrol biosynthesis KW - whole-genome duplication KW - medicinal plant KW - stress tolerance KW - Polygonum cuspidatum Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-189279 SN - 1664-462X VL - 10 ER - TY - JOUR A1 - Zhang, Fangyuan A1 - Michail, Evripidis A1 - Saal, Fridolin A1 - Krause, Ana-Maria A1 - Ravat, Prince T1 - Stereospecific Synthesis and Photophysical Properties of Propeller-Shaped C\(_{90}\)H\(_{48}\) PAH JF - Chemistry - A European Journal N2 - Herein, we have synthesized an enantiomerically pure propeller‐shaped PAH, C\(_{90}\)H\(_{48}\), possessing three [7]helicene and three [5]helicene subunits. This compound can be obtained in gram quantities in a straightforward manner. The photophysical and chiroptical properties were investigated using UV/Vis absorption and emission, optical rotation and circular dichroism spectroscopy, supported by DFT calculations. The nonlinear optical properties were investigated by two‐photon absorption measurements using linearly and circularly polarized light. The extremely twisted structure and packing of the homochiral compound were investigated by single‐crystal X‐ray diffraction analysis. KW - chirality KW - enantiomers KW - helicenes KW - polycyclic aromatic hydrocarbons KW - stereospecific sythesis Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-208682 VL - 25 IS - 71 ER - TY - JOUR A1 - Zetzl, Teresa A1 - Schuler, Michael A1 - Renner, Agnes A1 - Jentschke, Elisabeth A1 - van Oorschot, Birgitt T1 - Yoga intervention and reminder e-mails for reducing cancer-related fatigue - a study protocol of a randomized controlled trial JF - BMC Psychology N2 - Background Almost 90% of cancer patients suffer from symptoms of fatigue during treatment. Supporting treatments are increasingly used to alleviate the burden of fatigue. This study examines the short-term and long-term effects of yoga on fatigue and the effect of weekly reminder e-mails on exercise frequency and fatigue symptoms. Methods The aim of the first part of the study will evaluate the effectiveness of yoga for cancer patients with mixed diagnoses reporting fatigue. We will randomly allocate 128 patients to an intervention group (N = 64) receiving yoga and a wait-list control group (N = 64) receiving yoga 9 weeks later. The yoga therapy will be performed in weekly sessions of 60 min each for 8 weeks. The primary outcome will be self-reported fatigue symptoms. In the second part of the study, the effectiveness of reminder e-mails with regard to the exercise frequency and self-reported fatigue symptoms will be evaluated. A randomized allocated group of the participants (“email”) receives weekly reminder e-mails, the other group does not. Data will be assessed using questionnaires the beginning and after yoga therapy as well as after 6  months. Discussion Support of patients suffering from fatigue is an important goal in cancer patients care. If yoga therapy will reduce fatigue, this type of therapy may be introduced into routine practice. If the reminder e-mails prove to be helpful, new offers for patients may also develop from this. KW - Cancer KW - Fatigue KW - Yoga KW - Reminder e-mails KW - Supportive therapy Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-202268 VL - 7 ER - TY - THES A1 - Zapf, Michael T1 - Oxidische Perovskite mit Hoher Massenzahl Z: Dünnfilmdeposition und Spektroskopische Untersuchungen T1 - High-Z Perovskite Oxides: Thin Film Deposition and Spectroscopic Investigations N2 - Perovskite oxides are a very versatile material class with a large variety of outstanding physical properties. A subgroup of these compounds particularly tempting to investigate are oxides involving high-\(Z\) elements, where spin-orbit coupling is expected to give rise to new intriguing phases and potential application-relevant functionalities. This thesis deals with the preparation and characterization of two representatives of high-\(Z\) oxide sample systems based on KTaO\(_3\) and BaBiO\(_3\). KTaO\(_3\) is a band insulator with an electronic valence configuration of Ta 5\(d\)\(^0\) . It is shown that by pulsed laser deposition of a disordered LaAlO\(_3\) film on the KTaO\(_3\)(001) surface, through the creation of oxygen vacancies, a Ta 5\(d\)\(^{0+\(\delta\)}\) state is obtained in the upmost crystal layers of the substrate. In consequence a quasi two dimensional electron system (q2DES) with large spin-orbit coupling emerges at the heterointerface. Measurements of the Hall effect establish sheet carrier densities in the range of 0.1-1.2 10\(^{14}\) cm\(^2\), which can be controlled by the applied oxygen background pressure during deposition and the LaAlO\(_3\) film thickness. When compared to the prototypical oxide q2DESs based on SrTiO\(_3\) crystals, the investigated system exhibits exceptionally large carrier mobilities of up to 30 cm\(^2\)/Vs (7000 cm\(^2\)/Vs) at room temperature (below 10 K). Through a depth profiling by photoemission spectra of the Ta 4\(f\) core level it is shown that the majority of the Ta 5\(d\)\(^0\) charge carriers, consisting of mobile and localized electrons, is situated within 4 nm from the interface at low temperatures. Furthermore, the momentum-resolved electronic structure of the q2DES \(buried\) underneath the LaAlO\(_3\) film is probed by means of hard X-ray angle-resolved photoelectron spectroscopy. It is inferred that, due to a strong confinement potential of the electrons, the band structure of the system is altered compared to \(n\)-doped bulk KTO. Despite the constraint of the electron movement along one direction, the Fermi surface exhibits a clear three dimensional momentum dependence, which is related to a depth extension of the conduction channels of at least 1 nm. The second material, BaBiO\(_3\), is a charge-ordered insulator, which has recently been predicted to emerge as a large-gap topological insulator upon \(n\)-doping. This study reports on the thin film growth of pristine BaBiO\(_3\) on Nb:SrTiO\(_3\)(001) substrates by means of pulsed laser deposition. The mechanism is identified that facilitates the development of epitaxial order in the heterostructure despite the presence of an extraordinary large lattice mismatch of 12 %. At the heterointerface, a structurally modified layer of about 1.7 nm thickness is formed that gradually relieves the in-plane strain and serves as the foundation of a relaxed BBO film. The thereupon formed lattice orders laterally in registry with the substrate with the orientation BaBiO\(_3\)(001)||SrTiO\(_3\)(001) by so-called domain matching, where 8 to 9 BaBiO\(_3\) unit cells align with 9 to 10 unit cells of the substrate. Through the optimization of the deposition conditions in regard to the cation stoichiometry and the structural lattice quality, BaBiO\(_3\) thin films with bulk-like electronic properties are obtained, as is inferred from a comparison of valence band spectra with density functional theory calculations. Finally, a spectroscopic survey of BaBiO\(_3\) samples of various thicknesses resolves that a recently discovered film thickness-controlled phase transition in BaBiO\(_3\) thin films can be traced back to the structural and concurrent stoichiometric modifications occuring in the initially formed lattice on top of the SrTiO\(_3\) substrate rather than being purely driven by the smaller spatial extent of the BBO lattice. N2 - Komplexe Metalloxide mit Perowskitstruktur sind bekannt für ihre große Vielfalt einzigartiger physikalischer Eigenschaften. Eine interessante Untergruppe dieser Materialien sind Verbindungen von Elementen mit hoher Ordnungszahl \(Z\), in denen neue, durch Spin-Bahn Kopplung getriebene Phasen und anwendungsrelevante Funktionalitäten erwartet werden. Diese Arbeit handelt von der Präparation und Charakterisierung zweier Probensysteme, die auf eben solchen Materialien mit hoher \(Z\) basieren. KTaO\(_3\) ist ein Bandisolator, der im Grundzustand eine Ta 5\(d\)\(^0\) Valenz besitzt. Durch gepulste Laserdeposition von ungeordnetem LaAlO\(_3\) auf der KTaO\(_3\)(001) Oberfläche, werden die obersten Schichten des Substratkristalls durch die Erzeugung von Sauerstofffehlstellen dotiert. Es bildet sich ein quasi zweidimensionales metallisches Elektronensystem (q2DES) an der Grenzfläche der Heterostruktur aus. Messungen des Hall-Effekts ergeben Schichtladungsträgerdichten im Bereich von 0.1-1.2 10\(^{14}\) cm\(^2\), welche durch Anpassung des Sauerstoffhintergrunddrucks während der Deposition bzw. durch die Dicke der abgeschiedenen LaAlO\(_3\) Schicht beeinflusst werden können. Mit Werten von 30 cm\(^2\)/Vs (7000 cm\(^2\)/Vs) bei Raumtemperatur (unter 10 K), besitzt das q2DES in LaAlO\(_3\)/KTaO\(_3\) im Vergleich zu ähnlichen Elektronensystemen in SrTiO\(_3\) bemerkenswert große Ladungsträgerbeweglichkeiten. Aus dem Tiefenprofil des Photoemissionspektrums des Ta 4\(f\) Rumpfniveaus ergibt sich, dass sich der Großteil der Ta 5\(d\) Ladungsträger, bestehend aus mobilen und lokalisierten Elektronen, innerhalb einer Schicht von 4 nm Dicke befindet. Die Vermessung der elektronischen Bandstruktur des vergrabenen q2DES mit Hilfe winkelaufgelöster Photoelektronenspektroskopie mit harter Röntgenstrahlung zeigt, dass das Elektronensystem, vermutlich wegen des starken Potentialgradients an der Grenzfläche, eine modifizierte elektronische Struktur gegenüber n-dotiertem Bulk-KTaO\(_3\) aufweist. Trotz der Einschränkung der Bewegung der Elektronen entlang einer Richtung, besitzt die Fermifläche des Systems eine dreidimensionale Struktur, woarus auf eine Tiefenausdehnung der metallischen Zustände von mindestens 1 nm geschlossen werden kann. Undotiertes BaBiO\(_3\) ist durch die Ausbildung einer Ladungsordnung isolierend. Unter Elektronendotierung gilt das Material als Kandidat für einen oxidischen topologischen Isolator. In dieser Studie wird die Deposition von BaBiO\(_3\) auf Nb:SrTiO\(_3\)(001) Substraten untersucht. Dabei wird der Mechanismus identifiziert, der epitaktisches Wachstum von BaBiO\(_3\), trotz einer Gitterfehlanpassung von 12 %, ermöglicht: Eine 1.7 nm dicke Lage mit abweichender Kristallstruktur an der Grenzfläche entkoppelt das Filmgitter vom Substrat, sodass darüber vollständig relaxiertes BaBiO\(_3\) aufwachsen kann. Dieses weist eine epitaktische Orientierung von BaBiO\(_3\)(001)||SrTiO\(_3\)(001) auf, die durch die Ausbildung von lateralen Gitterdomänen, bei denen 8 bzw. 9 BaBiO\(_3\) auf 9 bzw. 10 SrTiO\(_3\) Einheitszellen ausgerichtet sind, gewährleistet wird. Die Stoichiometrie und die strukturelle Qualität der BaBiO\(_3\) Filme werden durch eine systematische Anpassung der Depositionsbedingungen optimiert. Die Valenzbandstruktur der Proben stimmt gut mit Rechnungen der Dichtefunktionaltheorie überein, was darauf hindeutet, dass die Filme hinsichtlich der elektronischen Eigenschaften mit BaBiO\(_3\) Einkristallen vergleichbar sind. Eine abschließende Untersuchung eines schichtdickenabhängigen Phasenübergangs in BaBiO\(_3\) Dünnfilmen, von dem kürzlich in der Literatur berichtet wurde, belegt, dass dieser nicht allein auf die Ausdehnung des Kristallgitters, sondern auch auf strukturelle und stoichiometrische Modifikationen der untersten Filmlagen zurückzuführen ist. KW - Perowskit KW - Röntgen-Photoelektronenspektroskopie KW - Pulsed laser deposition KW - Übergangsmetalloxide KW - KTaO3 KW - BaBiO3 KW - Oxide Heterostructure KW - Interface Conductivity KW - oxidische Heterostruktur KW - Grenzflächenleitfähigkeit KW - Winkelaufgelöste Photoemission mit harten Röntgenstrahlen KW - Hard X-ray Angle Resolved Photoemission KW - High-Z Oxides KW - HARPES Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-185370 ER - TY - THES A1 - Yu, Sung-Huan T1 - Development and application of computational tools for RNA-Seq based transcriptome annotations T1 - Entwicklung und Anwendung bioinformatischer Werkzeuge für RNA-Seq-basierte Transkriptom-Annotationen N2 - In order to understand the regulation of gene expression in organisms, precise genome annotation is essential. In recent years, RNA-Seq has become a potent method for generating and improving genome annotations. However, this Approach is time consuming and often inconsistently performed when done manually. In particular, the discovery of non-coding RNAs benefits strongly from the application of RNA-Seq data but requires significant amounts of expert knowledge and is labor-intensive. As a part of my doctoral study, I developed a modular tool called ANNOgesic that can detect numerous transcribed genomic features, including non-coding RNAs, based on RNA-Seq data in a precise and automatic fashion with a focus on bacterial and achaeal species. The software performs numerous analyses and generates several visualizations. It can generate annotations of high-Resolution that are hard to produce using traditional annotation tools that are based only on genome sequences. ANNOgesic can detect numerous novel genomic Features like UTR-derived small non-coding RNAs for which no other tool has been developed before. ANNOgesic is available under an open source license (ISCL) at https://github.com/Sung-Huan/ANNOgesic. My doctoral work not only includes the development of ANNOgesic but also its application to annotate the transcriptome of Staphylococcus aureus HG003 - a strain which has been a insightful model in infection biology. Despite its potential as a model, a complete genome sequence and annotations have been lacking for HG003. In order to fill this gap, the annotations of this strain, including sRNAs and their functions, were generated using ANNOgesic by analyzing differential RNA-Seq data from 14 different samples (two media conditions with seven time points), as well as RNA-Seq data generated after transcript fragmentation. ANNOgesic was also applied to annotate several bacterial and archaeal genomes, and as part of this its high performance was demonstrated. In summary, ANNOgesic is a powerful computational tool for RNA-Seq based annotations and has been successfully applied to several species. N2 - Exakte Genomannotationen sind essentiell für das Verständnis Genexpressionsregulation in verschiedenen Organismen. In den letzten Jahren entwickelte sich RNA-Seq zu einer äußerst wirksamen Methode, um solche Genomannotationen zu erstellen und zu verbessern. Allerdings ist das Erstellen von Genomannotationen bei manueller Durchführung noch immer ein zeitaufwändiger und inkonsistenter Prozess. Die Verwendung von RNA-Seq-Daten begünstigt besonders die Identifizierung von nichtkodierenden RNAs, was allerdings arbeitsintensiv ist und fundiertes Expertenwissen erfordert. Ein Teil meiner Promotion bestand aus der Entwicklung eines modularen Tools namens ANNOgesic, das basierend auf RNA-Seq-Daten in der Lage ist, eine Vielzahl von Genombestandteilen, einschließlich nicht-kodierender RNAs, automatisch und präzise zu ermitteln. Das Hauptaugenmerk lag dabei auf der Anwendbarkeit für bakterielle und archaeale Genome. Die Software führt eine Vielzahl von Analysen durch und stellt die verschiedenen Ergebnisse grafisch dar. Sie generiert hochpräzise Annotationen, die nicht unter Verwendung herkömmlicher Annotations-Tools auf Basis von Genomsequenzen erzeugt werden könnten. Es kann eine Vielzahl neuer Genombestandteile, wie kleine nicht-kodierende RNAs in UTRs, ermitteln, welche von bisherigen Programme nicht vorhergesagt werden können. ANNOgesic ist unter einer Open-Source-Lizenz (ISCL) auf https://github.com/Sung-Huan/ANNOgesic verfügbar. Meine Forschungsarbeit beinhaltet nicht nur die Entwicklung von ANNOgesic, sondern auch dessen Anwendung um das Transkriptom des Staphylococcus aureus-Stamms HG003 zu annotieren. Dieser ist einem Derivat von S. aureus NCTC8325 - ein Stamm, Dear ein bedeutendes Modell in der Infektionsbiologie darstellt. Zum Beispiel wurde er für die Untersuchung von Antibiotikaresistenzen genutzt, da er anfällig für alle bekannten Antibiotika ist. Der Elternstamm NCTC8325 besitzt zwei Mutationen im regulatorischen Genen (rsbU und tcaR), die Veränderungen der Virulenz zur Folge haben und die in Stamm HG003 auf die Wildtypsequenz zurückmutiert wurden. Dadurch besitzt S. aureus HG003 das vollständige, ursprüngliche Regulationsnetzwerk und stellt deshalb ein besseres Modell zur Untersuchung von sowohl Virulenz als auch Antibiotikaresistenz dar. Trotz seines Modellcharakters fehlten für HG003 bisher eine vollständige Genomsequenz und deren Annotationen. Um diese Lücke zu schließen habe ich als Teil meiner Promotion mit Hilfe von ANNOgesic Annotationen für diesen Stamm, einschließlich sRNAs und ihrer Funktionen, generiert. Dafür habe ich Differential RNA-Seq-Daten von 14 verschiedenen Proben (zwei Mediumsbedingungen mit sieben Zeitpunkten) sowie RNA-Seq-Daten, die von fragmentierten Transkripten generiert wurden, analysiert. Neben S. aureus HG003 wurde ANNOgesic auf eine Vielzahl von Bakterien- und Archaeengenome angewendet und dabei wurde eine hohe Performanz demonstriert. Zusammenfassend kann gesagt werden, dass ANNOgesic ein mächtiges bioinformatisches Werkzeug für die RNA-Seq-basierte Annotationen ist und für verschiedene Spezies erfolgreich angewandt wurde. KW - RNA-Seq KW - Genome Annotation KW - small RNA KW - Genom KW - Annotation KW - Small RNA KW - Bioinformatik Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-176468 ER - TY - JOUR A1 - Youssif, Khayrya A. A1 - Haggag, Eman G. A1 - Elshamy, Ali M. A1 - Rabeh, Mohamed A. A1 - Gabr, Nagwan M. A1 - Seleem, Amany A1 - Salem, M. Alaraby A1 - Hussein, Ahmed S. A1 - Krischke, Markus A1 - Mueller, Martin J. A1 - Ramadan Abdelmohsen, Usama T1 - Anti-Alzheimer potential, metabolomic profiling and molecular docking of green synthesized silver nanoparticles of Lampranthus coccineus and Malephora lutea aqueous extracts JF - PLoS ONE N2 - The green synthesis of silver nanoparticles (SNPs) using plant extracts is an eco-friendly method. It is a single step and offers several advantages such as time reducing, cost-effective and environmental non-toxic. Silver nanoparticles are a type of Noble metal nanoparticles and it has tremendous applications in the field of diagnostics, therapeutics, antimicrobial activity, anticancer and neurodegenerative diseases. In the present work, the aqueous extracts of aerial parts of Lampranthus coccineus and Malephora lutea F. Aizoaceae were successfully used for the synthesis of silver nanoparticles. The formation of silver nanoparticles was early detected by a color change from pale yellow to reddish-brown color and was further confirmed by transmission electron microscope (TEM), UV–visible spectroscopy, Fourier transform infrared (FTIR) spectroscopy, dynamic light scattering (DLS), X-ray diffraction (XRD), and energy-dispersive X-ray diffraction (EDX). The TEM analysis of showed spherical nanoparticles with a mean size between 12.86 nm and 28.19 nm and the UV- visible spectroscopy showed λ\(_{max}\) of 417 nm, which confirms the presence of nanoparticles. The neuroprotective potential of SNPs was evaluated by assessing the antioxidant and cholinesterase inhibitory activity. Metabolomic profiling was performed on methanolic extracts of L. coccineus and M. lutea and resulted in the identification of 12 compounds, then docking was performed to investigate the possible interaction between the identified compounds and human acetylcholinesterase, butyrylcholinesterase, and glutathione transferase receptor, which are associated with the progress of Alzheimer’s disease. Overall our SNPs highlighted its promising potential in terms of anticholinesterase and antioxidant activity as plant-based anti-Alzheimer drug and against oxidative stress. KW - Nanoparticles KW - Silver KW - Alzheimer's disease KW - Glutathione KW - Antioxidants KW - Serine proteases KW - Brain diseases KW - Metabolomics Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-202696 VL - 14 IS - 11 ER - TY - JOUR A1 - Yang, Manli A1 - Rajeeve, Karthika A1 - Rudel, Thomas A1 - Dandekar, Thomas T1 - Comprehensive Flux Modeling of Chlamydia trachomatis Proteome and qRT-PCR Data Indicate Biphasic Metabolic Differences Between Elementary Bodies and Reticulate Bodies During Infection JF - Frontiers in Microbiology N2 - Metabolic adaptation to the host cell is important for obligate intracellular pathogens such as Chlamydia trachomatis (Ct). Here we infer the flux differences for Ct from proteome and qRT-PCR data by comprehensive pathway modeling. We compare the comparatively inert infectious elementary body (EB) and the active replicative reticulate body (RB) systematically using a genome-scale metabolic model with 321 metabolites and 277 reactions. This did yield 84 extreme pathways based on a published proteomics dataset at three different time points of infection. Validation of predictions was done by quantitative RT-PCR of enzyme mRNA expression at three time points. Ct’s major active pathways are glycolysis, gluconeogenesis, glycerol-phospholipid (GPL) biosynthesis (support from host acetyl-CoA) and pentose phosphate pathway (PPP), while its incomplete TCA and fatty acid biosynthesis are less active. The modeled metabolic pathways are much more active in RB than in EB. Our in silico model suggests that EB and RB utilize folate to generate NAD(P)H using independent pathways. The only low metabolic flux inferred for EB involves mainly carbohydrate metabolism. RB utilizes energy -rich compounds to generate ATP in nucleic acid metabolism. Validation data for the modeling include proteomics experiments (model basis) as well as qRT-PCR confirmation of selected metabolic enzyme mRNA expression differences. The metabolic modeling is made fully available here. Its detailed insights and models on Ct metabolic adaptations during infection are a useful modeling basis for future studies. KW - metabolic modeling KW - metabolic flux KW - infection biology KW - elementary body KW - reticulate body KW - Chlamydia trachomatis Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-189434 SN - 1664-302X VL - 10 IS - 2350 ER - TY - JOUR A1 - Wörsdörfer, Philipp A1 - Dalda, Nahide A1 - Kern, Anna A1 - Krüger, Sarah A1 - Wagner, Nicole A1 - Kwok, Chee Keong A1 - Henke, Erik A1 - Ergün, Süleyman T1 - Generation of complex human organoid models including vascular networks by incorporation of mesodermal progenitor cells JF - Scientific Reports N2 - Organoids derived from human pluripotent stem cells are interesting models to study mechanisms of morphogenesis and promising platforms for disease modeling and drug screening. However, they mostly remain incomplete as they lack stroma, tissue resident immune cells and in particular vasculature, which create important niches during development and disease. We propose, that the directed incorporation of mesodermal progenitor cells (MPCs) into organoids will overcome the aforementioned limitations. In order to demonstrate the feasibility of the method, we generated complex human tumor as well as neural organoids. We show that the formed blood vessels display a hierarchic organization and mural cells are assembled into the vessel wall. Moreover, we demonstrate a typical blood vessel ultrastructure including endothelial cell-cell junctions, a basement membrane as well as luminal caveolae and microvesicles. We observe a high plasticity in the endothelial network, which expands, while the organoids grow and is responsive to anti-angiogenic compounds and pro-angiogenic conditions such as hypoxia. We show that vessels within tumor organoids connect to host vessels following transplantation. Remarkably, MPCs also deliver Iba1\(^+\) cells that infiltrate the neural tissue in a microglia-like manner. KW - Developmental biology KW - Stem cells Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-202681 VL - 9 ER - TY - JOUR A1 - Wutzler, Alexander A1 - Krogias, Christos A1 - Grau, Anna A1 - Veltkamp, Roland A1 - Heuschmann, Peter U. A1 - Haeusler, Karl Georg T1 - Stroke prevention in patients with acute ischemic stroke and atrial fibrillation in Germany - a cross sectional survey JF - BMC Neurology N2 - Background Atrial fibrillation (AF) is present in 15–20% of patients with acute ischemic stroke. Oral anticoagulation reduces the risk of AF-related recurrent stroke but clinical guideline recommendations are rather vague regarding its use in the acute phase of stroke. We aimed to assess the current clinical practice of medical stroke prevention in AF patients during the acute phase of ischemic stroke. Methods In April 2017, a standardized anonymous questionnaire was sent to clinical leads of all 298 certified stroke units in Germany. Results Overall, 154 stroke unit leads participated (response rate 52%). Anticoagulation in the acute phase of stroke is considered feasible in more than 90% of AF patients with ischemic stroke. Clinicians assume that about two thirds of all AF patients (range 20–100%) are discharged on oral anticoagulation. According to local preferences, acetylsalicylic acid is given orally in the majority of patients with delayed initiation of oral anticoagulation. A non-vitamin K-dependent oral anticoagulant (NOAC) is more often prescribed than a vitamin K-dependent oral anticoagulant (VKA). VKA is more often chosen in patients with previous VKA intake than in VKA naive patients. In the minority of patients, stroke unit leads discuss the prescription of a specific oral anticoagulant with the treating general practitioner. Adherence to medical stroke prevention after hospital discharge is not assessed on a regular basis in any patient by the majority of participating stroke centers. Conclusions Early secondary stroke prevention in AF patients in German stroke units is based on OAC use but prescription modalities vary in clinical practice. KW - Ischemic stroke KW - Secondary stroke prevention KW - Atrial fibrillation KW - Survey KW - Oral anticoagulation KW - Stroke unit Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-201078 VL - 19 ER - TY - JOUR A1 - Wu, Hao A1 - Reimann, Sabine A1 - Siddiqui, Sophiya A1 - Haag, Rainer A1 - Siegmund, Britta A1 - Dernedde, Jens A1 - Glauben, Rainer T1 - dPGS Regulates the Phenotype of Macrophages via Metabolic Switching JF - Macromolecular Bioscience N2 - The synthetic compound dendritic polyglycerol sulfate (dPGS) is a pleiotropic acting molecule but shows a high binding affinity to immunological active molecules as L‐/P‐selectin or complement proteins leading to well described anti‐inflammatory properties in various mouse models. In order to make a comprehensive evaluation of the direct effect on the innate immune system, macrophage polarization is analyzed in the presence of dPGS on a phenotypic but also metabolic level. dPGS administered macrophages show a significant increase of MCP1 production paralleled by a reduction of IL‐10 secretion. Metabolic analysis reveals that dPGS could potently enhance the glycolysis and mitochondrial respiration in M0 macrophages as well as decrease the mitochondrial respiration of M2 macrophages. In summary the data indicate that dPGS polarizes macrophages into a pro‐inflammatory phenotype in a metabolic pathway‐dependent manner. KW - infection KW - macrophage polarization KW - MCP1 KW - metabolic switch KW - polyglycerol sulfates Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-212711 VL - 19 IS - 12 ER - TY - THES A1 - Wu, Fang T1 - Adding new functions to insulin-like growth factor-I (IGF-I) via genetic codon expansion T1 - Hinzufügen neuer Funktionen zu Insulin-like Growth Factor-I (IGF-I) durch genetische Codon-Erweiterung N2 - Insulin-like growth factor-I (IGF-I) is a 70-amino acid polypeptide with a molecular weight of approximately 7.6 kDa acting as an anabolic effector. It is essential for tissue growth and remodeling. Clinically, it is used for the treatment of growth disorders and has been proposed for various other applications including musculoskeletal diseases. Unlike insulin, IGF-I is complexed to at least six high-affinity binding proteins (IGFBPs) exerting homeostatic effects by modulating IGF-I availability to its receptor (IGF-IR) on most cells in the body as well as changing the distribution of the growth factor within the organism.1-3 Short half-lived IGF-I have been the driving forces for the design of localized IGF-I depot systems or protein modification with enhanced pharmacokinetic properties. In this thesis, we endeavor to present a versatile biologic into which galenical properties were engineered through chemical synthesis, e.g., by site-specific coupling of biomaterials or complex composites to IGF-I. For that, we redesigned the therapeutic via genetic codon expansion resulting in an alkyne introduced IGF-I, thereby becoming a substrate for biorthogonal click chemistries yielding a site-specific decoration. In this approach, an orthogonal pyrrolysine tRNA synthetase (PylRS)/tRNAPyl CUA pair was employed to direct the co-translational incorporation of an unnatural amino acid—¬propargyl-L-lysine (plk)—bearing a clickable alkyne functional handle into IGF-I in response to the amber stop codon (UAG) introduced into the defined position in the gene of interest. We summarized the systematic optimization of upstream and downstream process alike with the ultimate goal to increase the yield of plk modified IGF-I therapeutic, from the construction of gene fusions resulting in (i) Trx-plk-IGF-I fusion variants, (ii) naturally occurring pro-IGF-I protein (IGF-I + Ea peptide) (plk-IGF-I Ea), over the subsequent bacterial cultivation and protein extraction to the final chromatographic purification. The opportunities and hurdles of all of the above strategies were discussed. Evidence was provided that the wild-type IGF-I yields were pure by exploiting the advantages of the pHisTrx expression vector system in concert with a thrombin enzyme with its highly specific proteolytic digestion site and multiple-chromatography steps. The alkyne functionality was successfully introduced into IGF-I by amber codon suppression. The proper folding of plk-IGF-I Ea was assessed by WST-1 proliferation assay and the detection of phosphorylated AKT in MG-63 cell lysate. The purity of plk-IGF-I Ea was monitored with RP-HPLC and SDS-PAGE analysis. This work also showed site-specific coupling an alkyne in plk-IGF-I Ea by copper (I)-catalyzed azide-alkyne cycloaddition (CuAAC) with potent activities in vitro. The site-specific immobilization of plk-IGF-I Ea to the model carrier (i.e., agarose beads) resulted in enhanced cell proliferation and adhesion surrounding the IGF-I-presenting particles. Cell proliferation and differentiation were enhanced in the accessibility of IGF-I decorated beads, reflecting the multivalence on cellular performance. Next, we aimed at effectively showing the disease environment by co-delivery of fibroblast growth factor 2 (FGF2) and IGF-I, deploying localized matrix metalloproteinases (MMPs) upregulation as a surrogate marker driving the response of the drug delivery system. For this purpose, we genetically engineered FGF2 variant containing an (S)-2-amino-6-(((2-azidoethoxy)carbonyl)amino)hexanoic acid incorporated at its N-terminus, followed by an MMPs-cleavable linker (PCL) and FGF2 sequence, thereby allowing site-directed, specific decoration of the resultant azide-PCL-FGF2 with the previously mentioned plk-IGF-I Ea to generate defined protein-protein conjugates with a PCL in between. The click reaction between plk-IGF-I Ea and azide-PCL-FGF2 was systematically optimized to increase the yield of IGF-FGF conjugates, including reaction temperature, incubation duration, the addition of anionic detergent, and different ratios of the participating biopharmaceutics. The challenge here was that CuAAC reaction components or conditions might oxidize free cysteines of azide-PCL-FGF2 and future work needs to present the extent of activity retention after conjugation. Furthermore, our study provides potential options for dual-labeling of IGF-I either by the introduction of unnatural amino acids within two distinct positions of the protein of interest for parallel “double-click” labeling of the resultant plk-IGF-I Ea-plk or by using a combination of enzymatic-catalyzed and CuAAC bioorthogonal coupling strategies for sequentially dual-labeling of plk-IGF-I Ea. In conclusion, genetic code expansion in combination with click-chemistry provides the fundament for novel IGF-I analogs allowing unprecedented site specificity for decoration. Considerable progress towards IGF-I based therapies with enhanced pharmacological properties was made by demonstrating the feasibility of the expression of plk incorporated IGF-I using E. coli and retained activity of unconjugated and conjugated IGF-I variant. Dual-labeling of IGF-I provides further insights into the functional requirements of IGF-I. Still, further investigation warrants to develop precise IGF-I therapy through unmatched temporal and spatial regulation of the pleiotropic IGF-I. N2 - Insulin-like growth factor-I (IGF-I) ist ein 70 Aminosäuren langes Polypeptid mit einem Molekuargewicht von 7,5 kDa, dass als anaboler Effektor wirkt und dadurch eine essentielle Rolle in Gewebewachstum und -umbau spielt. Klinisch wird IGF-I für die Behandlung von Wachstumsstörungen verwendet und ist für weitere Anwendungen wie muskuloskelettale Erkrankungen von Interesse. Im Gegensatz zu Insulin wird IGF-I von mindestens sechs hochaffinen Bindungsproteinen (IGFBPs) komplexiert, die homöostatisch regulierend wirken, indem sie die Verfügbarkeit von IGF-I zu seinem Rezeptor (IGF-IR) auf vielen Zellen modulieren und ebenso die Verteilung des Wachstumsfaktors im Körper steuern. Aufgrund der kurzen Halbwertszeit von IGF-I wurde die Entwicklung von lokalen IGF-I Depot-Systemen und von auf Proteinebene modifizierten IGF-I-Varianten mit verbesserten pharmakokinetischen Eigenschaften vorangetrieben. In der vorliegenden Arbeit sind wir bestrebt ein vielseitiges Biopharmazeutikum zu präsentieren, das hinsichtlich seiner galenischen Eigenschaften optimiert wurde, z. B. durch chemische Modifikation, wie ortsspezifische Kopplung von IGF-I an Biomaterialien oder komplexe Verbundstoffe. Für diesen Zweck wurde das Therapeutikum neu entworfen und über die Erweiterung des genetischen Codes eine Alkin-Funktionalität eingefügt. Durch dieses Alkin wird IGF-I zugänglich für die Modifizierung mit bio-orthogonaler, ortsspezifischer „Click-Chemie“. In diesem Ansatz wird ein orthogonales Pyrrolysin tRNA-Synthase (PylRS)/tRNAPyl-CUA – Paar verwendet, um den co-translationalen Einbau einer unnatürlichen Aminosäure — Propargyl-L-lysine (Plk) —, die eine Alkin-Funktionalität für Click-Reaktionen enthält, an Stelle des Amber-Stop-Codons (UAG) im entsprechenden Gen, im IGF-I-Protein zu gewährleisten. Die systematische Optimierung von Up- und Downstream-Prozessen, mit dem Ziel die Ausbeute von Plk-modifiziertem IGF-I-Biopharmazeutikum zu erhöhen, wurden zusammengefasst: von der Konstruktion von Genfusionen, die in (i) einer Trx-plk-IGF-I Fusionsvariant und (ii) natürlich vorkommendem pro-IGF-I Protein (IGF-I + Ea peptide) (Plk-IGF-I Ea) resultierten, über die folgende Expression in Bakterien und Proteinextraktion, bis hin zur finalen chromatographischen Reinigung des Biopharmazeutikums. Die Möglichkeiten und Schwierigkeiten aller oben genannten Strategien wurden diskutiert. Es wurde gezeigt, dass die Wildtyp-IGF-I-Ausbeuten durch den Einsatz des vorteilhaften pHisTrx-Expressionsvektor-Systems zusammen mit dem Enzym Thrombin und seiner hochspezifischen proteolytischen Spaltstelle und mehrfacher chromatographischer Aufreinigung einen hohen Reinheitsgrad aufwiesen. Die Alkin-Funktionalität wurde erfolgreich durch Unterdrückung des Amber-Codons in IGF-I eingeführt. Die richtige Faltung von Plk-IGF-I Ea wurde durch den WST-1 Proliferationsassay und den Nachweis von phosphorylierten Akt in MG-63-Zelllysat nachgewiesen. Die Reinheit von Plk-IGF-I Ea wurde durch RP-HPLC- und SDS-PAGE-Analyse überwacht. In dieser Arbeit konnte auch gezeigt werden, dass die ortspezifische Kopplung von Alkinen an Plk-IGF-I Ea durch Kupfer(I)-katalysierte Azid-Alkin Zykloaddition (CuAAC) in einem Produkt mit hoher in vitro Aktivität resultiert. Die ortspezifische Immobilisierung von Plk-IGF-I Ea an einem Modell-Trägersystem (hier: Agarosepartikel) führte zu einer verbesserten Zellproliferation und Zelladhäsion in der Umgebung der IGF-I-präsentierenden Partikel. Der vielfältige Einfluss von IGF-I auf Zellen wird durch die verbesserte Zellproliferation und -differenzierung durch die Verfügbarkeit von IGF-I präsentierenden Partikeln widergespiegelt. Als Nächstes setzten wir uns zum Ziel den Krankheitseinfluss durch die gleichzeitige Anwendung von Fibroblast-Wachstumsfaktor 2 (FGF2) und IGF-I zu zeigen, indem wir uns der lokalen Hochregulierung von Matrixmetalloproteinasen (MMPS) als Surrogat-Krankheitsmarker bedienten, der die Antwort des Drug Delivery-Systems auslöst. Zu diesem Zweck wurde eine FGF2-Variante genetisch modifiziert, sodass sie am N-Terminus eine (S)-2-amino-6-(((2-azidoethoxy)carbonyl)amino)Hexansäure trägt - gefolgt von einen durch MMPs spaltbaren Verbindungsstück (PCL) und der FGF2 Sequenz - und dadurch die gezielte, spezifische Konjugation des resultierenden Azid-PCL-FGF2 mit dem vorher erwähnten Plk-IGF-I Ea ermöglicht, um definierte Protein-Protein-Konjugate, die mit einem PCL verbunden sind, zu erzeugen. Die Click-Reaktion zwischen Plk-IGF-I Ea und Azid-PCL-FGF2 wurde zur Erhöhung der IGF-FGF Ausbeute systematisch optimiert, indem die Parameter Temperatur, Inkubationsdauer, Zugabe von anionischem Tensid und verschiedene Eduktverhältnisse untersucht wurden. Es gilt zu bedenken, dass die in der CuAAC Reaktion eingesetzten Komponenten oder Reaktionsbedingungen freie Cysteinreste von Azid-PCL-FGF2 oxidieren können und es in Zukunft gilt, die verbleibende Aktivität nach Proteinkonjugation zu bestimmen. Des Weiteren zeigen unsere Untersuchungen potentielle Möglichkeiten für duale Konjugation von IGF-I entweder durch die Einführung einer unnatürlichen Aminosäure an zwei verschiedenen Positionen innerhalb des Proteins (Plk-IGF-I Ea-Plk) für parallele „Doppel-Click“-Konjugation oder durch die Kombination bioorthogonaler Kopplungsreaktionen - einer enzymkatalysierten Reaktion und CuAAC - für sequentielles duales Verknüpfen von Plk-IGF-I Ea. Schlussendlich stellt die Erweiterung des genetischen Codes in Kombination mit Click-Chemie eine Grundlage für neue IGF-I-Analoga dar, die eine noch nie dagewesene Ortsspezifität für Konjugationen besitzen. Ein entscheidender Fortschritt hin zu IGF-I basierten Therapeutika mit verbesserten pharmakologischen Eigenschaften wurde durch die Expression, Reinigung und Konjugation von bioaktivem IGF-I mit Plk sowie konjugierten IGF-I Varianten erreicht. Duales Modifizieren von IGF-I erlaubt weitere Einblicke in die funktionalen Anforderungen an IGF-I. Dennoch sind weitere Untersuchungen nötig, um eine gezielte IGF-I Therapie trotz der unterschiedlichen zeitlichen und räumlichen Regulierung des pleiotropen IGF-I zu ermöglichen. KW - Insulin-like growth factor-I KW - genetic codon expansion KW - site-specific protein modification KW - Insulin-like Growth Factor I KW - Codon Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-175330 ER - TY - JOUR A1 - Wobser, Marion A1 - Weber, Alexandra A1 - Glunz, Amelie A1 - Tauch, Saskia A1 - Seitz, Kristina A1 - Butelmann, Tobias A1 - Hesbacher, Sonja A1 - Goebeler, Matthias A1 - Bartz, René A1 - Kohlhof, Hella A1 - Schrama, David A1 - Houben, Roland T1 - Elucidating the mechanism of action of domatinostat (4SC-202) in cutaneous T cell lymphoma cells JF - Journal of Hematology & Oncology N2 - Background Targeting epigenetic modifiers is effective in cutaneous T cell lymphoma (CTCL). However, there is a need for further improvement of this therapeutic approach. Here, we compared the mode of action of romidepsin (FK228), an established class I histone deacetylase inhibitor, and domatinostat (4SC-202), a novel inhibitor of class I HDACs, which has been reported to also target the lysine-specific histone demethylase 1A (LSD1). Methods We performed MTS assays and flow cytometric analyses of propidium iodide or annexin V-stained cells to assess drug impact on cellular proliferation, cell cycle distribution, and survival. Histone acetylation and methylation as well as caspase activation was analyzed by immunoblot. Gene expression analysis was performed using NanosString technology. Knockdown and knockout of LSD1 was achieved with shRNA and CRISPR/Cas9, respectively, while the CRISPR/Cas9 synergistic activation mediator system was used to induce expression of endogenous HDACs and LSD1. Furthermore, time-lapse fluorescence microscopy and an in vitro tubulin polymerization assay were applied. Results While FK228 as well as 4SC-202 potently induced cell death in six different CTCL cell lines, only in the case of 4SC-202 death was preceded by an accumulation of cells in the G2/M phase of the cell cycle. Surprisingly, apoptosis and accumulation of cells with double DNA content occurred already at 4SC-202 concentrations hardly affecting histone acetylation and methylation, and provoking significantly less changes in gene expression compared to biologically equivalent doses of FK228. Indeed, we provide evidence that the 4SC-202-induced G2/M arrest in CTCL cells is independent of de novo transcription. Furthermore, neither enforced expression of HDAC1 nor knockdown or knockout of LSD1 affected the 4SC-202-induced effects. Since time-lapse microscopy revealed that 4SC-202 could affect mitotic spindle formation, we performed an in vitro tubulin polymerization assay revealing that 4SC-202 can directly inhibit microtubule formation. Conclusions We demonstrate that 4SC-202, a drug currently tested in clinical trials, effectively inhibits growth of CTCL cells. The anti-cancer cell activity of 4SC-202 is however not limited to LSD1-inhibition, modulation of histone modifications, and consecutive alteration of gene expression. Indeed, the compound is also a potent microtubule-destabilizing agent. KW - Cutaneous lymphoma KW - Epigenetic regulation KW - Histone deacetylase KW - HDAC KW - Lysine-specific methylase KW - LSD1 KW - Tubulin Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-200703 VL - 12 ER - TY - THES A1 - Wistlich, Laura T1 - NCO-sP(EO-stat-PO) as functional additive for biomaterials’ development T1 - NCO-sP(EO-stat-PO) als funktionale Additive für die Entwicklung von Biomaterialien N2 - The aim of this thesis was the application of the functional prepolymer NCO-sP(EO-stat-PO) for the development of new biomaterials. First, the influence of the star-shaped polymers on the mechanical properties of biocements and bone adhesives was investigated. 3-armed star-shaped macromers were used as an additive for a mineral bone cement, and the influence on the mechanical properties was studied. Additionally, a previously developed bone adhesive was examined regarding cytocompatibility. The second topic was the examination of novel functionalization steps which were performed on the surface of electrospun fibers modified with NCO-sP(EO-stat-PO). This established method of functionalizing electrospun meshes was advanced regarding the modification with proteins which was then demonstrated in a biological application. Two different kinds of antibodies were immobilized on the fiber surface in a consecutive manner and the influence of these proteins on the cell behavior was investigated. The final topic involved the quantification of surface-bound peptide sequences. By functionalization of the peptides with the UV-reactive molecule 2-mercaptopyridine it was possible to quantify this compound via UV measurements by cleavage of disulfide bridges and indirectly draw conclusions about the number of immobilized peptides. In the field of mineral biocements and bone adhesives, NCO-sP(EO-stat-PO) was able to influence the setting behavior and mechanical performance of mineral bone cements based on calcium phosphate chemistry. The addition of NCO-sP(EO-stat-PO) resulted in a pseudo-ductile fracture behavior due to the formation of a hydrogel network in the cement, which was then mineralized by nanosized hydroxyapatite crystals following cement setting. Accordingly, a commercially available aluminum silicate cement from civil engineering could be modified. In addition, it could be shown that the use of NCO-sP(EO-stat-PO) is beneficial for adjusting specific material properties of bone adhesives. Here, the crosslinking behavior of the prepolymer in an aqueous medium was exploited to form an interpenetrating network (IPN) together with a photochemically curing poly(ethylene glycol) dimethacrylate (PEGDMA) matrix. This could be used for the development of a bone adhesive with an improved adhesion to bone in a wet environment. The developed bone adhesive was further investigated in terms of possible influences of the initiator systems. In addition, the material system was tested for cytocompatibility by using different cell lines. Moreover, the preparation of electrospun fiber meshes via solution electrospinning consisting of poly(lactide-co-glycolide) (PLGA) as a backbone polymer and NCO-sP(EO-stat-PO) as functional additive is an established method for the application of the meshes as a replacement of the native extracellular matrix (ECM). In general, these fibers reveal diameters in the nanometer range, are protein and cell repellent due to the hydrophilic properties of the prepolymer and show a specific biofunctionalization by immobilization of peptide sequences. Here, the isocyanate groups presented on the fiber surface after electrospinning were used to carry out various functionalization steps, while retaining the properties of protein and cell repellency. The modification of the electrospun fibers involved the immobilization of analogs or antagonists of tumor necrosis factor (TNF) and the indirect detection of these by interaction with a light-producing enzyme. Here, a multimodal modification of the fiber surface with RGD to mediate cell adhesion and two different antibodies could be achieved. After culturing the cell line HT1080, the pro- or anti-inflammatory response of cells could be detected by IL-8 specific ELISA measurements. Furthermore, the quantification of molecules on the surface of electrospun fibers was investigated. It was tested whether the detection by means of super-resolution microscopy would be possible. Therefore, experiments were performed with short amino acid sequences such as RGD for quantification by fluorescence microscopy. Based on earlier results, in which a UV-spectrometrically active molecule was used to detect the quantification of RGD, it was shown that short peptides can also be quantified in a small scale on flat functional substrates (2D) such as NCO-sP(EO-stat-PO) hydrogel coatings, and modified electrospun fibers produced from PLGA and NCO-sP(EO-stat-PO) (3D). In addition, a collagen sequence was used to prove that a successful quantification can be carried out as well for longer peptide chains. These studies have revealed that NCO-sP(EO-stat-PO) can serve as a functional additive for many applications and should be considered for further studies on the development of novel biomaterials. The rapid crosslinking reaction, the resulting hydrogel formation and the biocompatibility are to be mentioned as positive properties, which makes the prepolymer interesting for future applications. N2 - Ziel der Arbeit war die Anwendung der funktionalen Präpolymere NCO-sP(EO-stat-PO) für die Entwicklung von neuen Biomaterialien. Als erstes wurde untersucht, welchen Einfluss die sternförmigen Polymere auf die mechanischen Eigenschaften von Biozementen und Knochenadhäsiven haben. Beispielsweise wurden 3-armige Macromere als Additive für einen mineralischen Knochenzement verwendet und dessen mechanische Eigenschaften untersucht. Außerdem wurde ein kürzlich entwickelter NCO-sP(EO-stat-PO) haltiger Knochenklebers auf Zytokompatibilität getestet. Ein zweites Kapitel beinhaltete die Modifikation von elektrogesponnenen Polymerfasern mit NCO-sP(EO-stat-PO) basierend auf einer etablierten Methode. Es wurde untersucht, welche weiteren Funktionalisierungen auf solchen Oberflächen vorgenommen werden können. Diese Modifizierungsschritte wurden in einer biologischen Anwendung demonstriert, indem verschiedene Antikörper aufeinanderfolgend auf der Faseroberfläche gebunden wurden. Der Einfluss dieser Proteine auf das Verhalten von Zellen auf diesen Oberflächen wurde untersucht. Als letztes wurde die Quantifizierung von oberflächengebundenen Peptidsequenzen demonstriert. Mittels Funktionalisierung der Peptide mit dem UV-reaktiven Molekül 2-Mercaptopyridin konnte durch Spaltung von Disulfidbrücken diese Verbindung UV-metrisch quantifiziert und indirekt Rückschlüsse auf die Anzahl der immobilisierten Peptide gezogen werden. Durch den Zusatz von NCO-sP(EO-stat-PO) konnten das Abbindeverhalten und die mechanischen Eigenschaften von mineralischen Calciumphosphat-Knochenzementen moduliert werden. Der Zusatz von 3-armigem, sternförmigem NCO-sP(EO-stat-PO) führte dabei zu einem pseudoduktilen Bruchverhalten durch Bildung eines Hydrogelnetzwerks im Zement, das anschließend durch die Zementreaktion mit nanoskaligem Hydroxylapatit mineralisiert wurde. Im Bereich mineralischer Knochenzemente und Adhäsive konnte gezeigt werden, dass NCO-sP(EO-stat-PO) zur Einstellung der Eigenschaften verwendet werden kann. Hierbei wurde dessen Quervernetzungsverhalten im wässrigen Medium ausgenutzt, um mit einer photochemisch härtenden Polyethylenglykoldimethakrylat (PEGDMA) Matrix interpenetrierende Netzwerke (IPNs) zu bilden. Diese konnten für die Entwicklung eines Knochenklebers mit verbesserter Haftung auf Knochen im feuchten Milieu genutzt werden. Das kürzlich entwickelte Knochenadhäsiv wurde im Hinblick auf den Einfluss des Initiatorsystems untersucht. Außerdem wurde die Zytokompatibilität des Materials anhand verschiedener Zelltypen getestet. Die Herstellung von elektrogesponnenen Faservliesen mittels Solution Electrospinning aus Polylactid-co-Glycolid (PLGA) als Gerüst-bildendem Polymer und NCO-sP(EO-stat-PO) als funktionalem Additiv ist eine etablierte Methode, um diese Vliese zur Nachbildung nativer Extrazellulär-Matrix anzuwenden. Die Fasern weisen einen Durchmesser im Nanometer-Bereich auf, sind proteinabweisend durch die hydrophilen Eigenschaften des Präpolymers und können durch Immobilisierung von Peptidsequenzen spezifisch biofunktionalisiert werden. Hierbei wurden die Isocyanate auf der Faseroberfläche genutzt, um verschiedenste Funktionalisierungsschritte unter Beibehaltung der protein- und zellabweisenden Eigenschaften auszuführen. Die Modifizierung der elektrogesponnenen Fasern beinhaltete die Immobilisierung von Analoga oder Antagonisten des Tumornekrosefaktors (TNF) sowie den indirekten Nachweis über eine Lichtreaktion. Hierbei konnte eine multimodale Modifizierung der Faseroberfläche mit RGD-Sequenzen zur Vermittlung der Zelladhäsion und zwei verschiedenen Antikörpern erreicht werden. Nach Kultivierung der Zelllinie HT1080 konnte die pro- oder antiinflammatorische Antwort der Zellen mittels IL-8 spezifischem ELISA nachgewiesen werden. Eine weitere Fragestellung war der Quantifizierung von Molekülen auf der Oberfläche von elektrogesponnen Fasern gewidmet. Es wurde getestet, ob ein Nachweis mittels hochauflösender Mikroskopie möglich ist. Hierzu wurden RGD-Sequenzen zur fluoreszenzmikroskopischen Quantifizierung verwendet. Basierend auf früheren Ergebnissen, bei denen für die Quantifizierung von RGD ein UV-aktives Molekül genutzt wurde, konnte gezeigt werden, dass sich kurze Peptide auch im kleinen Maßstab auf flachen Substraten (2D) wie Hydrogel-Beschichtungen aus NCO-sP(EO-stat-PO) als auch auf elektrogesponnenen Fasern aus PLGA und NCO-sP(EO-stat-PO) (3D) quantifizieren lassen. Außerdem wurde eine Kollagen-Sequenz als längere Peptidkette herangezogen, um auch hier eine erfolgreiche Quantifizierung zu beweisen. Es konnte gezeigt werden, dass NCO-sP(EO-stat-PO) als funktionales Additiv für viele Anwendungen dienen kann und für weitere Untersuchungen zur Entwicklung von Biomaterialien berücksichtigt werden sollte. Die schnelle Quervernetzungsreaktion, die resultierende Hydrogelbildung und die Biokompatibilität sind als positive Eigenschaften zu nennen, die das Präpolymer für zukünftige Anwendungen interessant macht. KW - Sternpolymere KW - Funktionalisierung KW - Isocyanate KW - surface functionalization KW - biomaterials KW - chemical crosslinking KW - bioceramics KW - electrospun fibers KW - Oberflächenfunktionalisierung KW - funktionale Präpolymere KW - Modifikation von Biokeramiken KW - Funktionalisierung von elektrogesponnenen Fasern Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-178365 ER - TY - JOUR A1 - Wintzheimer, Susanne A1 - Oppmann, Maximilian A1 - Dold, Martin A1 - Pannek, Carolin A1 - Bauersfeld, Marie‐Luise A1 - Henfling, Michael A1 - Trupp, Sabine A1 - Schug, Benedikt A1 - Mandel, Karl T1 - Indicator Supraparticles for Smart Gasochromic Sensor Surfaces Reacting Ultrafast and Highly Sensitive JF - Particle & Particle Systems Characterization N2 - The detection of toxic gases, such as NH\(_{3}\) and CO, in the environment is of high interest in chemical, electronic, and automotive industry as even small amounts can display a health risk for workers. Sensors for the real‐time monitoring of these gases should be simple, robust, reversible, highly sensitive, inexpensive and show a fast response. The indicator supraparticles presented herein can fulfill all of these requirements. They consist of silica nanoparticles, which are assembled to supraparticles upon spray‐drying. Sensing molecules such as Reichardt's dye and a binuclear rhodium complex are loaded onto the microparticles to target NH\(_{3}\) and CO detection, respectively. The spray‐drying technique affords high flexibility in primary nanoparticle size selection and thus, easy adjustment of the porosity and specific surface area of the obtained micrometer‐sized supraparticles. This ultimately enables the fine‐tuning of the sensor sensitivity and response. For the application of the indicator supraparticles in a gas detection device, they can be immobilized on a coating. Due to their microscale size, they are large enough to poke out of thin coating layers, thus guaranteeing their gas accessibility, while being small enough to be applicable to flexible substrates. KW - CO sensing KW - NH\(_{3}\) KW - sensor supports KW - silica supraparticles KW - smart surfaces Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-213671 VL - 36 IS - 10 ER - TY - JOUR A1 - Winter, Patrick A1 - Andelovic, Kristina A1 - Kampf, Thomas A1 - Gutjahr, Fabian Tobias A1 - Heidenreich, Julius A1 - Zernecke, Alma A1 - Bauer, Wolfgang Rudolf A1 - Jakob, Peter Michael A1 - Herold, Volker T1 - Fast self-navigated wall shear stress measurements in the murine aortic archusing radial 4D-phase contrast cardiovascular magnetic resonance at 17.6 T JF - Journal of Cardiovascular Magnetic Resonance N2 - Purpose 4D flow cardiovascular magnetic resonance (CMR) and the assessment of wall shear stress (WSS) are non-invasive tools to study cardiovascular risks in vivo. Major limitations of conventional triggered methods are the long measurement times needed for high-resolution data sets and the necessity of stable electrocardiographic (ECG) triggering. In this work an ECG-free retrospectively synchronized method is presented that enables accelerated high-resolution measurements of 4D flow and WSS in the aortic arch of mice. Methods 4D flow and WSS were measured in the aortic arch of 12-week-old wildtype C57BL/6 J mice (n = 7) with a radial 4D-phase-contrast (PC)-CMR sequence, which was validated in a flow phantom. Cardiac and respiratory motion signals were extracted from the radial CMR signal and were used for the reconstruction of 4D-flow data. Rigid motion correction and a first order B0 correction was used to improve the robustness of magnitude and velocity data. The aortic lumen was segmented semi-automatically. Temporally averaged and time-resolved WSS and oscillatory shear index (OSI) were calculated from the spatial velocity gradients at the lumen surface at 14 locations along the aortic arch. Reproducibility was tested in 3 animals and the influence of subsampling was investigated. Results Volume flow, cross-sectional areas, WSS and the OSI were determined in a measurement time of only 32 min. Longitudinal and circumferential WSS and radial stress were assessed at 14 analysis planes along the aortic arch. The average longitudinal, circumferential and radial stress values were 1.52 ± 0.29 N/m2, 0.28 ± 0.24 N/m2 and − 0.21 ± 0.19 N/m2, respectively. Good reproducibility of WSS values was observed. Conclusion This work presents a robust measurement of 4D flow and WSS in mice without the need of ECG trigger signals. The retrospective approach provides fast flow quantification within 35 min and a flexible reconstruction framework. KW - 4D flow KW - WSS KW - OSI KW - Self-navigation KW - Mouse KW - Aortic arch Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-201120 VL - 21 ER - TY - THES A1 - Wiesbeck, Christina T1 - Fabrication and characterization of NCO-sP(EO-stat-PO)- crosslinked and functionalized electrospun gelatin scaffolds for tissue engineering applications T1 - Herstellung und Charakterisierung von elektrogesponnenen Nanofasern aus Gelatine und NCO-sP(EO-stat-PO) für Tissue Engineering Anwendungen N2 - In Tissue Engineering, scaffolds composed of natural polymers often show a distinct lack in stability. The natural polymer gelatin is highly fragile under physiological conditions, nevertheless displaying a broad variety of favorable properties. The aim of this study was to fabricate electrospun gelatin nanofibers, in situ functionalized and stabilized during the spinning process with highly reactive star polymer NCO-sP(EO-stat-PO) (“sPEG”). A spinning protocol for homogenous, non-beaded, 500 to 1000 nm thick nanofibers from different ratios of gelatin and sPEG was successfully established. Fibers were subsequently characterized and tested with SEM imaging, tensile tests, water incubation, FTIR, EDX, and cell culture. It was shown that adding sPEG during the spinning process leads to an increase in visible fiber crosslinking, mechanical stability, and stability in water. The nanofibers were further shown to be biocompatible in cell culture with RAW 264.7 macrophages. N2 - Tissue Engineering Scaffolds aus natürlichen Polymeren zeigen häufig mangelnde Stabilität, insbesondere unter physiologischen Bedingungen. Das natürliche Polymer Gelatine besitzt einige sehr vorteilhafte Eigenschaften für die Anwendung bei der Produktion künstlicher Körpergewebe. Beim Einsatz im menschlichen Organismus ist die Gelatine durch ihre Wasserlöslichkeit höchst fragil. Das Ziel dieser Arbeit war die Herstellung von Nanofaser-Scaffolds aus Gelatine mittels Elektrospinning und deren in situ Stabilisierung durch das Sternpolymer NCO-sP(EO-stat-PO) („sPEG“). Zunächst wurde ein Spinningprotokoll zur Fabrikation homogener, glatter, 500 bis 1000 nm dicker Nanofasern in verschiedenen Verhältnissen von Gelatine und sPEG erarbeitet. Mittels REM Bildgebung, Zugversuchen, Wasserinkubationsversuchen, FTIR, EDX und Zellkultur wurden die Fasern untersucht und charakterisiert. Es konnte gezeigt werden, dass die Zugabe von sPEG während des Spinningprozesses zu einer sichtbaren Quervernetzung der Fasern, sowie zu einem Anstieg der mechanischen Festigkeit und der Wasserstabilität führt. Des Weiteren wurde die Biokompatibilität der Nanofasern in der Zellkultur mit RAW 264.7 Makrophagen belegt. KW - Tissue Engineering KW - Electrospinning KW - Gelatine KW - Polyethylenglykole KW - NCO-sP(EO-stat-PO) KW - sPEG KW - starPEG Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-190988 ER - TY - JOUR A1 - Wiechmann, Tobias A1 - Röh, Simone A1 - Sauer, Susann A1 - Czamara, Darina A1 - Arloth, Janine A1 - Ködel, Maik A1 - Beintner, Madita A1 - Knop, Lisanne A1 - Menke, Andreas A1 - Binder, Elisabeth B. A1 - Provençal, Nadine T1 - Identification of dynamic glucocorticoid-induced methylation changes at the FKBP5 locus JF - Clinical Epigenetics N2 - Background Epigenetic mechanisms may play a major role in the biological embedding of early-life stress (ELS). One proposed mechanism is that glucocorticoid (GC) release following ELS exposure induces long-lasting alterations in DNA methylation (DNAm) of important regulatory genes of the stress response. Here, we investigate the dynamics of GC-dependent methylation changes in key regulatory regions of the FKBP5 locus in which ELS-associated DNAm changes have been reported. Results We repeatedly measured DNAm in human peripheral blood samples from 2 independent cohorts exposed to the GC agonist dexamethasone (DEX) using a targeted bisulfite sequencing approach, complemented by data from Illumina 450K arrays. We detected differentially methylated CpGs in enhancers co-localizing with GC receptor binding sites after acute DEX treatment (1 h, 3 h, 6 h), which returned to baseline levels within 23 h. These changes withstood correction for immune cell count differences. While we observed main effects of sex, age, body mass index, smoking, and depression symptoms on FKBP5 methylation levels, only the functional FKBP5 SNP (rs1360780) moderated the dynamic changes following DEX. This genotype effect was observed in both cohorts and included sites previously shown to be associated with ELS. Conclusion Our study highlights that DNAm levels within regulatory regions of the FKBP5 locus show dynamic changes following a GC challenge and suggest that factors influencing the dynamics of this regulation may contribute to the previously reported alterations in DNAm associated with current and past ELS exposure. KW - DNA methylation KW - FKBP5 KW - glucocorticoid receptor KW - early-life stress KW - targeted bisulfite sequencing KW - dexamethasone Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-233673 VL - 11 ER - TY - JOUR A1 - Wick, Christoph A1 - Hartelt, Alexander A1 - Puppe, Frank T1 - Staff, symbol and melody detection of Medieval manuscripts written in square notation using deep Fully Convolutional Networks JF - Applied Sciences N2 - Even today, the automatic digitisation of scanned documents in general, but especially the automatic optical music recognition (OMR) of historical manuscripts, still remains an enormous challenge, since both handwritten musical symbols and text have to be identified. This paper focuses on the Medieval so-called square notation developed in the 11th–12th century, which is already composed of staff lines, staves, clefs, accidentals, and neumes that are roughly spoken connected single notes. The aim is to develop an algorithm that captures both the neumes, and in particular its melody, which can be used to reconstruct the original writing. Our pipeline is similar to the standard OMR approach and comprises a novel staff line and symbol detection algorithm based on deep Fully Convolutional Networks (FCN), which perform pixel-based predictions for either staff lines or symbols and their respective types. Then, the staff line detection combines the extracted lines to staves and yields an F\(_1\) -score of over 99% for both detecting lines and complete staves. For the music symbol detection, we choose a novel approach that skips the step to identify neumes and instead directly predicts note components (NCs) and their respective affiliation to a neume. Furthermore, the algorithm detects clefs and accidentals. Our algorithm predicts the symbol sequence of a staff with a diplomatic symbol accuracy rate (dSAR) of about 87%, which includes symbol type and location. If only the NCs without their respective connection to a neume, all clefs and accidentals are of interest, the algorithm reaches an harmonic symbol accuracy rate (hSAR) of approximately 90%. In general, the algorithm recognises a symbol in the manuscript with an F\(_1\) -score of over 96%. KW - optical music recognition KW - historical document analysis KW - medieval manuscripts KW - neume notation KW - fully convolutional neural networks Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-197248 SN - 2076-3417 VL - 9 IS - 13 ER - TY - JOUR A1 - Westermann, Alexander J. A1 - Venturini, Elisa A1 - Sellin, Mikael E. A1 - Förstner, Konrad U. A1 - Hardt, Wolf-Dietrich A1 - Vogel, Jörg T1 - The major RNA-binding protein ProQ impacts virulence gene expression in Salmonella enterica serovar Typhimurium JF - mBio N2 - FinO domain proteins such as ProQ of the model pathogen Salmonella enterica have emerged as a new class of major RNA-binding proteins in bacteria. ProQ has been shown to target hundreds of transcripts, including mRNAs from many virulence regions, but its role, if any, in bacterial pathogenesis has not been studied. Here, using a Dual RNA-seq approach to profile ProQ-dependent gene expression changes as Salmonella infects human cells, we reveal dysregulation of bacterial motility, chemotaxis, and virulence genes which is accompanied by altered MAPK (mitogen-activated protein kinase) signaling in the host. Comparison with the other major RNA chaperone in Salmonella, Hfq, reinforces the notion that these two global RNA-binding proteins work in parallel to ensure full virulence. Of newly discovered infection-associated ProQ-bound small noncoding RNAs (sRNAs), we show that the 3′UTR-derived sRNA STnc540 is capable of repressing an infection-induced magnesium transporter mRNA in a ProQ-dependent manner. Together, this comprehensive study uncovers the relevance of ProQ for Salmonella pathogenesis and highlights the importance of RNA-binding proteins in regulating bacterial virulence programs. IMPORTANCE The protein ProQ has recently been discovered as the centerpiece of a previously overlooked “third domain” of small RNA-mediated control of gene expression in bacteria. As in vitro work continues to reveal molecular mechanisms, it is also important to understand how ProQ affects the life cycle of bacterial pathogens as these pathogens infect eukaryotic cells. Here, we have determined how ProQ shapes Salmonella virulence and how the activities of this RNA-binding protein compare with those of Hfq, another central protein in RNA-based gene regulation in this and other bacteria. To this end, we apply global transcriptomics of pathogen and host cells during infection. In doing so, we reveal ProQ-dependent transcript changes in key virulence and host immune pathways. Moreover, we differentiate the roles of ProQ from those of Hfq during infection, for both coding and noncoding transcripts, and provide an important resource for those interested in ProQ-dependent small RNAs in enteric bacteria. KW - Hfq KW - noncoding RNA KW - ProQ KW - RNA-seq KW - bacterial pathogen KW - posttranscriptional control Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-177722 VL - 10 IS - 1 ER - TY - JOUR A1 - Werner, Rudolf A. A1 - Wakabayashi, Hiroshi A1 - Chen, Xinyu A1 - Hayakawa, Nobuyuki A1 - Lapa, Constantin A1 - Rowe, Steven P. A1 - Javadi, Mehrbod S. A1 - Robinson, Simon A1 - Higuchi, Takahiro T1 - Ventricular distribution pattern of the novel sympathetic nerve PET radiotracer \(^{18}\)F-LMI1195 in Rabbit Hearts JF - Scientific Reports N2 - We aimed to determine a detailed regional ventricular distribution pattern of the novel cardiac nerve PET radiotracer \(^{18}\)F-LMI1195 in healthy rabbits. Ex-vivo high resolution autoradiographic imaging was conducted to identify accurate ventricular distribution of \(^{18}\)F-LMI1195. In healthy rabbits, \(^{18}\)F-LMI1195 was administered followed by the reference perfusion marker \(^{201}\)Tl for a dual-radiotracer analysis. After 20 min of \(^{18}\)F-LMI1195 distribution time, the rabbits were euthanized, the hearts were extracted, frozen, and cut into 20-μm short axis slices. Subsequently, the short axis sections were exposed to a phosphor imaging plate to determine \(^{18}\)F-LMI1195 distribution (exposure for 3 h). After complete \(^{18}\)F decay, sections were re-exposed to determine 201Tl distribution (exposure for 7 days). For quantitative analysis, segmental regions of Interest (ROIs) were divided into four left ventricular (LV) and a right ventricular (RV) segment on mid-ventricular short axis sections. Subendocardial, mid-portion, and subepicardial ROIs were placed on the LV lateral wall. \(^{18}\)F-LMI1195 distribution was almost homogeneous throughout the LV wall without any significant differences in all four LV ROIs (anterior, posterior, septal and lateral wall, 99 ± 2, 94 ± 5, 94 ± 4 and 97 ± 3%LV, respectively, n.s.). Subepicardial \(^{201}\)Tl uptake was significantly lower compared to the subendocardial portion (subendocardial, mid-portion, and subepicardial activity: 90 ± 3, 96 ± 2 and *80 ± 5%LV, respectively, *p < 0.01 vs. mid-portion). This was in contradistinction to the transmural wall profile of \(^{18}\)F-LMI1195 (90 ± 4, 96 ± 5 and 84 ± 4%LV, n.s.). A slight but significant discrepant transmural radiotracer distribution pattern of \(^{201}\)Tl in comparison to \(^{18}\)F-LMI1195 may be a reflection of physiological sympathetic innervation and perfusion in rabbit hearts. KW - Cardiovascular diseases KW - Heart failure Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-202707 VL - 9 ER - TY - JOUR A1 - Werner, Rudolf A. A1 - Ordonez, Alvaro A. A1 - Sanchez-Bautista, Julian A1 - Marcus, Charles A1 - Lapa, Constantin A1 - Rowe, Steven P. A1 - Pomper, Martin G. A1 - Leal, Jeffrey P. A1 - Lodge, Martin A. A1 - Javadi, Mehrbod S. A1 - Jain, Sanjay K. A1 - Higuchi, Takahiro T1 - Novel functional renal PET imaging with 18F-FDS in human subjects JF - Clinical Nuclear Medicine N2 - The novel PET probe 2-deoxy-2-18F-fluoro-D-sorbitol (18F-FDS) has demonstrated favorable renal kinetics in animals. We aimed to elucidate its imaging properties in two human volunteers. 18F-FDS was produced by a simple one-step reduction from 18F-FDG. On dynamic renal PET, the cortex was delineated and activity gradually transited in the parenchyma, followed by radiotracer excretion. No adverse effects were reported. Given the higher spatiotemporal resolution of PET relative to conventional scintigraphy, 18F-FDS PET offers a more thorough evaluation of human renal kinetics. Due to its simple production from 18F-FDG, 18F-FDS is virtually available at any PET facility with radiochemistry infrastructure. KW - 2-deoxy-2-18F-fluoro-D-sorbitol KW - Positronen-Emissions-Tomografie KW - 18F-FDS KW - renal imaging KW - Positron-Emission Tomography KW - split renal function KW - kidney Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-174634 SN - 0363-9762 VL - 44 IS - 5 ER - TY - JOUR A1 - Werner, Rudolf A. A1 - Kircher, Stefan A1 - Higuchi, Takahiro A1 - Kircher, Malte A1 - Schirbel, Andreas A1 - Wester, Hans-Jürgen A1 - Buck, Andreas K. A1 - Pomper, Martin G. A1 - Rowe, Steven P. A1 - Lapa, Constantin T1 - CXCR4-directed imaging in solid tumors JF - Frontiers in Oncology N2 - Despite histological evidence in various solid tumor entities, available experience with CXCR4-directed diagnostics and endoradiotherapy mainly focuses on hematologic diseases. With the goal of expanding the application of CXCR4 theranostics to solid tumors, we aimed to elucidate the feasibility of CXCR4-targeted imaging in a variety of such neoplasms. Methods: Nineteen patients with newly diagnosed, treatment-naïve solid tumors including pancreatic adenocarcinoma or neuroendocrine tumor, cholangiocarcinoma, hepatocellular carcinoma, renal cell carcinoma, ovarian cancer, and prostate cancer underwent [\(^{68}\)Ga]Pentixafor PET/CT. CXCR4-mediated uptake was assessed both visually and semi-quantitatively by evaluation of maximum standardized uptake values (SUV\(_{max}\)) of both primary tumors and metastases. With physiologic liver uptake as reference, tumor-to-background ratios (TBR) were calculated. [\(^{68}\)Ga]Pentixafor findings were further compared to immunohistochemistry and [\(^{18}\)F]FDG PET/CT. Results: On [\(^{68}\)Ga]Pentixafor PET/CT, 10/19 (52.6%) primary tumors were visually detectable with a median SUVmax of 5.4 (range, 1.7–16.0) and a median TBR of 2.6 (range, 0.8–7.4), respectively. The highest level of radiotracer uptake was identified in a patient with cholangiocarcinoma (SUVmax, 16.0; TBR, 7.4). The relatively low uptake on [\(^{68}\)Ga]Pentixafor was also noted in metastases, exhibiting a median SUVmax of 4.5 (range, 2.3–8.8; TBR, 1.7; range, 1.0–4.1). A good correlation between uptake on [\(^{68}\)Ga]Pentixafor and histological derived CXCR4 expression was noted (R = 0.62, P < 0.05). In the 3 patients in whom [\(^{18}\)F]FDG PET/CT was available, [\(^{68}\)Ga]Pentixafor exhibited lower uptake in all lesions. Conclusions: In this cohort of newly diagnosed, treatment-naïve patients with solid malignancies, CXCR4 expression as detected by [\(^{68}\)Ga]Pentixafor-PET/CT and immunohistochemistry was rather moderate. Thus, CXCR4-directed imaging may not play a major role in the management of solid tumors in the majority of patients. KW - CXCR4 KW - [68Ga]Pentixafor KW - theranostics KW - solid tumors KW - chemokine receptor Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-195678 SN - 2234-943X VL - 9 IS - 770 ER - TY - INPR A1 - Werner, Rudolf A. A1 - Bundschuh, Ralph A. A1 - Bundschuh, Lena A1 - Fanti, Stefano A1 - Javadi, Mehrbod S. A1 - Higuchi, Takahiro A1 - Weich, A. A1 - Pienta, Kenneth J. A1 - Buck, Andreas K. A1 - Pomper, Martin G. A1 - Gorin, Michael A. A1 - Herrmann, Ken A1 - Lapa, Constantin A1 - Rowe, Steven P. T1 - Novel Structured Reporting Systems for Theranostic Radiotracers T2 - Journal of Nuclear Medicine N2 - Standardized reporting is more and more routinely implemented in clinical practice and such structured reports have a major impact on a large variety of medical fields, e.g. laboratory medicine, pathology, and, recently, radiology. Notably, the field of nuclear medicine is constantly evolving, as novel radiotracers for numerous clinical applications are developed. Thus, framework systems for standardized reporting in this field may a) increase clinical acceptance of new radiotracers, b) allow for inter- and intra-center comparisons for quality assurance, and c) may be used in (global) multi-center studies to ensure comparable results and enable efficient data abstraction. In the last two years, several standardized framework systems for positron emission tomography (PET) radiotracers with potential theranostic applications have been proposed. These include systems for prostate-specific membrane antigen (PSMA)-targeted PET agents for the diagnosis and treatment of prostate cancer (PCa) and somatostatin receptor (SSTR)-targeted PET agents for the diagnosis and treatment of neuroendocrine neoplasias. In the present review, those standardized framework systems for PSMA- and SSTR-targeted PET will be briefly introduced followed by an overview of their advantages and limitations. In addition, potential applications will be defined, approaches to validate such concepts will be proposed, and future perspectives will be discussed. KW - standardized reporting KW - Positronen-Emissions-Tomografie KW - prostate cancer KW - neuroendocrine neoplasia KW - 68Ga-DOTATATE KW - 68Ga-DOTATOC KW - 68Ga-DOTANOC KW - somatostatin receptor KW - SSTR KW - prostate-specific membrane antigen KW - PSMA KW - RADS KW - PSMA-RADS KW - SSTR-RADS KW - MI-RADS KW - PROMISE Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-174629 SN - 0161-5505 N1 - This research was originally published in JNM. Authors: Rudolf A. Werner, Ralph A. Bundschuh, Lena Bundschuh, Stefano Fanti, Mehrbod S. Javadi, Takahiro Higuchi, A. Weich, Kenneth J. Pienta, Andreas K. Buck, Martin G. Pomper, Michael A. Gorin, Ken Herrmann, Constantin Lapa, Steven P. Rowe. Novel Structured Reporting Systems for Theranostic Radiotracers. J Nucl Med May 1, 2019 vol. 60 no. 5 577-584 © SNMMI. ER - TY - THES A1 - Wermser, Charlotte T1 - Morphology, regulation and interstrain interactions in a new macrocolony biofilm model of the human pathogen \(Staphylococcus\) \(aureus\) T1 - Morphologie, Regulation und stammübergreifende Wechselwirkungen in einem neuen Makrokolonie-Biofilmmodell des Humanpathogens \(Staphylococcus\) \(aureus\) N2 - The role of multicellularity as the predominant microbial lifestyle has been affirmed by studies on the genetic regulation of biofilms and the conditions driving their formation. Biofilms are of prime importance for the pathology of chronic infections of the opportunistic human pathogen Staphylococcus aureus. The recent development of a macrocolony biofilm model in S. aureus opened new opportunities to study evolution and physiological specialization in biofilm communities in this organism. In the macrocolony biofilm model, bacteria form complex aggregates with a sophisticated spatial organization on the micro- and macroscale. The central positive and negative regulators of this organization in S. aureus are the alternative sigma factor σB and the quorum sensing system Agr, respectively. Nevertheless, nothing is known on additional factors controlling the macrocolony morphogenesis. In this work, the genome of S. aureus was screened for novel factors that are required for the development of the macrocolony architecture. A central role for basic metabolic pathways was demonstrated in this context as the macrocolony architecture was strongly altered by the disruption of nucleotide and carbohydrate synthesis. Environmental signals further modulate macrocolony morphogenesis as illustrated by the role of an oxygen-sensitive gene regulator, which is required for the formation of complex surface structures. A further application of the macrocolony biofilm model was demonstrated in the study of interstrain interactions. The integrity of macrocolony communities was macroscopically visibly disturbed by competitive interactions between clinical isolates of S. aureus. The results of this work contribute to the characterization of the macrocolony biofilm model and improve our understanding of developmental processes relevant in staphylococcal infections. The identification of anti-biofilm effects exercised through competitive interactions could lead to the design of novel antimicrobial strategies targeting multicellular bacterial communities. N2 - Die Rolle von Multizellularität als der vorherrschende mikrobielle Lebensstil wurde durch Studien über die genetische Steuerung von Biofilmen und über Biofilmbildung-fördernde Bedingungen bestätigt. Biofilme sind wichtige Faktoren in der Pathogenese chronischer Infektionen durch das opportunistische Humanpathogen Staphylococcus aureus. Die kürzlich erfolgte Entwicklung eines Makrokolonie-Biofilmmodells für S. aureus eröffnet neue Möglichkeiten evolutionäre Entwicklungen und die physiologische Spezialisierung in bakteriellen Gemeinschaften zu untersuchen. Im Makrokolonie-Biofilmmodell bilden Bakterien komplexe Aggregate, die sich durch eine hochentwickelte räumliche Organisation auf mikroskopischer und makroskopischer Ebene auszeichnen. Die positiven und negativen Hauptregulatoren dieser Organisation sind der alternative Sigmafaktor σB sowie das Quorum sensing System Agr. Dennoch sind weitere Faktoren, die die Morphogenese der Makrokolonien steuern, unbekannt. In dieser Arbeit wurde das Genom von S. aureus im Hinblick auf neue Faktoren, die für die Entwicklung der Makrokoloniearchitektur nötig sind, analysiert. Dabei wurde belegt, dass zentrale Stoffwechselwege eine zentrale Rolle spielen. Störungen der Nukleotid- und Kohlenhydrat-Synthese hatten starke Auswirkungen auf die Makrokoloniearchitektur. Weiterhin wurde anhand eines Sauerstoff-sensitiven Genregulators, der für die Ausbildung von Oberflächenstrukturen nötig ist, demonstriert, wie die Morphogenese der Makrokolonien durch Umweltsignale moduliert wird. Das Makrokolonie-Biofilmmodell fand weitere Anwendung in der Untersuchung von stammübergreifenden Interaktionen. Die Integrität der Makrokolonie-Biofilme wurde durch die Wechselwirkungen in Konkurrenz stehender klinischer Isolate stark herabgesetzt. Die Ergebnisse dieser Arbeit tragen zur Charakterisierung des Makrokolonie-Biofilmmodells bei und geben Einsicht in Entwicklungsprozesse, die während Staphylokokken-Infektionen ablaufen. Die Beschreibung der negativen Beeinflussung der Biofilme durch bakterielle Wechselwirkungen könnte zur Entwicklung neuer antimikrobieller Strategien, die gezielt gegen multizelluläre bakterielle Gemeinschaften wirksam sind, beitragen. KW - Staphylococcus aureus KW - Biofilm KW - MRSA KW - macrocolony KW - interactions KW - biofilm architecture KW - Makrokolonie KW - Wechselwirkungen KW - Biofilmarchitektur Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-165931 ER - TY - JOUR A1 - Wen, Xinbo A1 - Nowak-Król, Agnieszka A1 - Nagler, Oliver A1 - Kraus, Felix A1 - Zhu, Na A1 - Zheng, Nan A1 - Müller, Matthias A1 - Schmidt, David A1 - Xie, Zengqi A1 - Würthner, Frank T1 - Tetrahydroxy-perylene bisimide embedded in zinc oxide thin film as electron transporting layer for high performance non-fullerene organic solar cells JF - Angewandte Chemie International Edition N2 - By introduction of four hydroxy (HO) groups into the two perylene bisimide (PBI) bay areas, new HO‐PBI ligands were obtained which upon deprotonation can complex ZnII ions and photosensitize semiconductive zinc oxide thin films. Such coordination is beneficial for dispersing PBI photosensitizer molecules evenly into metal oxide films to fabricate organic–inorganic hybrid interlayers for organic solar cells. Supported by the photoconductive effect of the ZnO:HO‐PBI hybrid interlayers, improved electron collection and transportation is achieved in fullerene and non‐fullerene polymer solar cell devices, leading to remarkable power conversion efficiencies of up to 15.95 % for a non‐fullerene based organic solar cell. KW - hydroxylation KW - metal complexenes KW - perylene bisimide KW - photoconductive interlayer KW - solar cells Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-204723 VL - 58 IS - 37 ER - TY - THES A1 - Weller, Lisa T1 - How to not act? Cognitive foundations of intentional nonactions T1 - Wie handelt man nicht? - Kognitive Grundlagen von intentionalen Nichthandlungen N2 - Human actions are generally not determined by external stimuli, but by internal goals and by the urge to evoke desired effects in the environment. To reach these effects, humans typically have to act. But at times, deciding not to act can be better suited or even the only way to reach a desired effect. What mental processes are involved when people decide not to act to reach certain effects? From the outside it may seem that nothing remarkable is happening, because no action can be observed. However, I present three studies which disclose the cognitive processes that control nonactions. The present experiments address situations where people intentionally decide to omit certain actions in order to produce a predictable effect in the environment. These experiments are based on the ideomotor hypothesis, which suggests that bidirectional associations can be formed between actions and the resulting effects. Because of these associations, anticipating the effects can in turn activate the respective action. The results of the present experiments show that associations can be formed between nonactions (i.e., the intentional decision not to act) and the resulting effects. Due to these associations, perceiving the nonaction effects encourages not acting (Exp. 1–3). What is more, planning a nonaction seems to come with an activation of the effects that inevitably follow the nonaction (Exp. 4–5). These results suggest that the ideomotor hypothesis can be expanded to nonactions and that nonactions are cognitively represented in terms of their sensory effects. Furthermore, nonaction effects can elicit a sense of agency (Exp. 6–8). That is, even though people refrain from acting, the resulting nonaction effects are perceived as self-produced effects. In a nutshell, these findings demonstrate that intentional nonactions include specific mechanisms and processes, which are involved, for instance, in effect anticipation and the sense of agency. This means that, while it may seem that nothing remarkable is happening when people decide not to act, complex processes run on the inside, which are also involved in intentional actions. N2 - Menschliches Verhalten ist im Allgemeinen nicht reizbestimmt, sondern zielgerichtet und hat die Absicht gewünschte Effekte in der Umwelt hervorzurufen. Häufig müssen Menschen eine Handlung ausführen, um diese Effekte zu erreichen. Manche Effekte können allerdings besser oder sogar nur dann erreicht werden, wenn man sich entscheidet nicht zu handeln. Welche mentalen Prozesse finden aber statt, wenn Menschen sich entscheiden nicht zu handeln? Oberflächlich betrachtet scheint es als würde nichts weiter Bemerkenswertes ablaufen, da keine Handlung zu beobachten ist. In drei Experimentalreihen zeige ich aber die kognitiven Prozesse auf, die das Nichthandeln kontrollieren. In den vorliegenden Experimenten werden Situationen untersucht, in denen sich Menschen entscheiden nicht zu handeln, um vorhersehbare Effekte zu erzeugen. Die Experimente basieren auf der ideomotorischen Hypothese, die annimmt, dass bidirektionale Assoziationen zwischen Handlungen und den resultierenden Effekten gebildet werden können. Dadurch kann eine Vorstellung der Effekte wiederum die verbundene Handlung hervorrufen. Die Ergebnisse zeigen, dass Assoziationen auch zwischen Nichthandlungen und den daraus resultierenden Effekten gebildet werden können. Diese Assoziationen führen dazu, dass die Wahrnehmung der Effekte selbst die Nichthandlung hervorrufen kann (Exp. 1–3). Außerdem scheint die Planung einer Nichthandlung automatisch eine Vorstellung der assoziierten Effekte zu aktivieren (Exp. 4–5). Diese Befunde legen nahe, dass die ideomotorische Hypothese auch auf Nichthandlungen übertragen werden kann und dass Nichthandlungen kognitiv durch die Effekte, die sie hervorrufen, repräsentiert sind. Darüber hinaus scheinen Menschen ein Verursachungsgefühl (“Sense of Agency”) für die Effekte ihrer Nichthandlungen zu haben (Exp. 6–8). Das bedeutet, dass die resultierenden Effekte (obwohl nicht gehandelt wurde) wie selbsterzeugte Effekte wahrgenommen werden können. Zusammenfassend zeigen die Experimente, dass intentionale Nichthandlungen von spezifischen Mechanismen und Prozessen begleitet werden, die z.B. bei der Effektantizipation und dem Sense of Agency involviert sind. Obwohl es also von außen so scheint, als würde nichts Bemerkenswertes passieren, wenn Menschen intentional nicht handeln, laufen im Inneren komplexe Prozesse ab wie beim intentionalen Handeln. KW - Intention KW - Kognition KW - Ideomotor Theory KW - Sense of Agency KW - Intentional Nonaction KW - Ideomotorik KW - Intentionale Nichthandlung KW - Aktionsforschung KW - Experimentelle Psychologie Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-176678 ER - TY - THES A1 - Weinstock [geb. Pattschull], Grit T1 - Crosstalk between the MMB complex and YAP in transcriptional regulation of cell cycle genes T1 - Interaktion zwischen dem MMB-Komplex und YAP bei der transkriptionellen Regulation von Zellzyklusgenen N2 - The Myb-MuvB (MMB) multiprotein complex is a master regulator of cell cycle-dependent gene expression. Target genes of MMB are expressed at elevated levels in several different cancer types and are included in the chromosomal instability (CIN) signature of lung, brain, and breast tumors. This doctoral thesis showed that the complete loss of the MMB core subunit LIN9 leads to strong proliferation defects and nuclear abnormalities in primary lung adenocarcinoma cells. Transcriptome profiling and genome-wide DNA-binding analyses of MMB in lung adenocarcinoma cells revealed that MMB drives the expression of genes linked to cell cycle progression, mitosis, and chromosome segregation by direct binding to promoters of these genes. Unexpectedly, a previously unknown overlap between MMB-dependent genes and several signatures of YAP-regulated genes was identified. YAP is a transcriptional co-activator acting downstream of the Hippo signaling pathway, which is deregulated in many tumor types. Here, MMB and YAP were found to physically interact and co-regulate a set of mitotic and cytokinetic target genes, which are important in cancer. Furthermore, the activation of mitotic genes and the induction of entry into mitosis by YAP were strongly dependent on MMB. By ChIP-seq and 4C-seq, the genome-wide binding of MMB upon YAP overexpression was analyzed and long-range chromatin interaction sites of selected MMB target gene promoters were identified. Strikingly, YAP strongly promoted chromatin-association of B-MYB through binding to distal enhancer elements that interact with MMB-regulated promoters through chromatin looping. Together, the findings of this thesis provide a so far unknown molecular mechanism by which YAP and MMB cooperate to regulate mitotic gene expression and suggest a link between two cancer-relevant signaling pathways. N2 - Der Myb-MuvB (MMB) Multiproteinkomplex spielt eine wichtige Rolle in der Expression Zellzyklus abhängiger Gene, welche erhöhte Expressionsraten in verschiedenen Krebsarten aufweisen und Teil der sogenannten chromosomalen Instabilitätssignatur (CIN) von Lungen-, Gehirn- und Brusttumoren sind. In dieser Arbeit konnte gezeigt werden, dass die Deletion von LIN9, einer zentralen Untereinheit des MMB-Komplexes, in primären Lungenkarzinomzellen der Maus zu starken Proliferationsdefekten und Anomalitäten des Zellkerns führt. Analysen des gesamten Transkriptoms mit Hilfe von RNA-Seq ergaben, dass der MMB-Komplex die Expression einer Gruppe von Genen reguliert, die mit dem Voranschreiten des Zellzyklus, der Mitose und der Trennung der Chromosomen in Verbindung stehen. Die Regulation dieser Gene erfolgt durch direkte Bindung des MMB-Komplexes an die dazugehörigen Promotoren, wie die Analyse der genomweiten DNA-Bindung des MMB-Komplexes durch ChIP-Seq erkennbar werden ließ. Weiterhin wurde in dieser Arbeit eine neuartige Interaktion zwischen MMB und YAP, einem transkriptionellen Co-Aktivator und Effektorprotein des Hippo-Signalweges, gefunden. Die Dysregulation von Hippo/YAP ist an der Entstehung verschiedener Tumorentitäten beteiligt. Die Ergebnisse dieser Arbeit zeigen, dass YAP mit Untereinheiten von MMB interagiert und dass beide Signalwege ein überlappendes Set von Zielgenen, die für die Entstehung von Tumoren relevant sind, regulieren. Es konnte außerdem nachgewiesen werden, dass YAP den MMB-Komplex benötigt, um die Expression mitotischer Gene zu aktivieren und dass der durch YAP induzierte Eintritt in die Mitose vom MMB-Komplex abhängig ist. In einem weiteren Teil der Arbeit wurden mittels ChIP-Seq und 4C-Seq Chromatin-Interaktionen von Promotoren der MMB-Zielgene mit weiter entfernt liegenden Bereichen des Genoms identifiziert. Hierbei konnte festgestellt werden, dass YAP die Bindung der MMB-Untereinheit B-MYB an die Promotoren der MMB-Zielgene verstärkt, indem es an weiter entfernte Enhancer bindet. Diese von YAP gebundenen Enhancer interagieren über Schleifenbildung des Chromatins mit den Promotoren MMB-regulierter Gene. Zusammengefasst konnten die Ergebnisse dieser Arbeit einen bisher unbekannten molekularen Mechanismus für die gemeinsame Regulation von Genen durch den MMB Komplex und YAP enthüllen und somit einen Zusammenhang zwischen zwei krebsrelevanten Signalwegen aufdecken. KW - Krebs KW - Zellteilung KW - Genexpression KW - MMB complex KW - Hippo pathway KW - mitosis KW - cytokinesis KW - mitotic gene expression KW - Lungenkrebs KW - Mitose Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-170866 ER - TY - THES A1 - Weinhard, Alexander T1 - Managing RFID Implementations - Implications for Managerial Decision Making T1 - Management von RFID-Implementierungen - Implikationen für die Management Entscheidungsfindung N2 - The present dissertation investigates the management of RFID implementations in retail trade. Our work contributes to this by investigating important aspects that have so far received little attention in scientific literature. We therefore perform three studies about three important aspects of managing RFID implementations. We evaluate in our first study customer acceptance of pervasive retail systems using privacy calculus theory. The results of our study reveal the most important aspects a retailer has to consider when implementing pervasive retail systems. In our second study we analyze RFID-enabled robotic inventory taking with the help of a simulation model. The results show that retailers should implement robotic inventory taking if the accuracy rates of the robots are as high as the robots’ manufacturers claim. In our third and last study we evaluate the potentials of RFID data for supporting managerial decision making. We propose three novel methods in order to extract useful information from RFID data and propose a generic information extraction process. Our work is geared towards practitioners who want to improve their RFID-enabled processes and towards scientists conducting RFID-based research. N2 - Die vorliegende Arbeit beschäftigt sich mit dem Management von RFID Implementierungen im Einzelhandel. Dabei leistet die Arbeit einen Beitrag, indem wichtige aber bisher in der wissenschaftlichen Fachliteratur nur wenig beachtete Aspekte beleuchtet werden. Hierfür werden drei Studien zu drei relevanten Managementaspekten durchgeführt. Zunächst wird die Kundenakzeptanz im Bezug auf pervasive Retail Applikationen betrachtet und mithilfe der Privacy Calculus Theorie ermittelt, welche Aspekte für die Kundenakzeptanz pervasiver Systeme besonders relevant sind. In Studie zwei wird eine RFID-gestützte Roboterinvnetur anhand einer Simulationsstudie evaluiert. Die Studie zeigt, dass eine durch Roboter durchgeführte Inventur für einen Einzelhändler zu empfehlen ist, falls die Roboter tatsächlich mit den von den Herstellern beworbenen Erkennungsraten arbeiten. In der dritten und letzten Studie werden die Potenziale von RFID-Daten zur Entscheidungsunterstützung des Managements evaluiert. Es werden drei Methoden vorgestellt um aus RFID-Daten nützliche Informationen zu gewinnen. Abschließend wird ein generisches Vorgehensmodell zur Informationsextraktion entwickelt. Die Arbeit ist sowohl an Praktiker gerichtet, die ihre RFID-basierten Prozesse verbessern möchten, als auch an Wissenschaftler die RFID-basierte Forschung betreiben. KW - RFID KW - Simulation KW - Management KW - Privatsphäre KW - Roboter KW - Data Analytics Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-178161 ER - TY - JOUR A1 - Weigand, Matthias A1 - Wurm, Michael A1 - Dech, Stefan A1 - Taubenböck, Hannes T1 - Remote sensing in environmental justice research—a review JF - ISPRS International Journal of Geo-Information N2 - Human health is known to be affected by the physical environment. Various environmental influences have been identified to benefit or challenge people's physical condition. Their heterogeneous distribution in space results in unequal burdens depending on the place of living. In addition, since societal groups tend to also show patterns of segregation, this leads to unequal exposures depending on social status. In this context, environmental justice research examines how certain social groups are more affected by such exposures. Yet, analyses of this per se spatial phenomenon are oftentimes criticized for using “essentially aspatial” data or methods which neglect local spatial patterns by aggregating environmental conditions over large areas. Recent technological and methodological developments in satellite remote sensing have proven to provide highly detailed information on environmental conditions. This narrative review therefore discusses known influences of the urban environment on human health and presents spatial data and applications for analyzing these influences. Furthermore, it is discussed how geographic data are used in general and in the interdisciplinary research field of environmental justice in particular. These considerations include the modifiable areal unit problem and ecological fallacy. In this review we argue that modern earth observation data can represent an important data source for research on environmental justice and health. Especially due to their high level of spatial detail and the provided large-area coverage, they allow for spatially continuous description of environmental characteristics. As a future perspective, ongoing earth observation missions, as well as processing architectures, ensure data availability and applicability of ’big earth data’ for future environmental justice analyses. KW - satellite remote sensing KW - review KW - environmental justice KW - big earth data KW - urban environments Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-196950 SN - 2220-9964 VL - 8 IS - 1 ER - TY - JOUR A1 - Weidner, Magdalena T. A1 - Lardenoije, Roy A1 - Eijssen, Lars A1 - Mogavero, Floriana A1 - De Groodt, Lilian P. M. T. A1 - Popp, Sandy A1 - Palme, Rupert A1 - Förstner, Konrad U. A1 - Strekalova, Tatyana A1 - Steinbusch, Harry W. M. A1 - Schmitt-Böhrer, Angelika G. A1 - Glennon, Jeffrey C. A1 - Waider, Jonas A1 - van den Hove, Daniel L. A. A1 - Lesch, Klaus-Peter T1 - Identification of cholecystokinin by genome-wide profiling as potential mediator of serotonin-dependent behavioral effects of maternal separation in the amygdala JF - Frontiers in Neuroscience N2 - Converging evidence suggests a role of serotonin (5-hydroxytryptamine, 5-HT) and tryptophan hydroxylase 2 (TPH2), the rate-limiting enzyme of 5-HT synthesis in the brain, in modulating long-term, neurobiological effects of early-life adversity. Here, we aimed at further elucidating the molecular mechanisms underlying this interaction, and its consequences for socio-emotional behaviors, with a focus on anxiety and social interaction. In this study, adult, male Tph2 null mutant (Tph2\(^{-/-}\)) and heterozygous (Tph2\(^{+/-}\)) mice, and their wildtype littermates (Tph2\(^{+/+}\)) were exposed to neonatal, maternal separation (MS) and screened for behavioral changes, followed by genome-wide RNA expression and DNA methylation profiling. In Tph2\(^{-/-}\) mice, brain 5-HT deficiency profoundly affected socio-emotional behaviors, i.e., decreased avoidance of the aversive open arms in the elevated plus-maze (EPM) as well as decreased prosocial and increased rule breaking behavior in the resident-intruder test when compared to their wildtype littermates. Tph2\(^{+/-}\) mice showed an ambiguous profile with context-dependent, behavioral responses. In the EPM they showed similar avoidance of the open arm but decreased prosocial and increased rule breaking behavior in the resident-intruder test when compared to their wildtype littermates. Notably, MS effects on behavior were subtle and depended on the Tph2 genotype, in particular increasing the observed avoidance of EPM open arms in wildtype and Tph2\(^{+/-}\) mice when compared to their Tph2\(^{-/-}\) littermates. On the genomic level, the interaction of Tph2 genotype with MS differentially affected the expression of numerous genes, of which a subset showed an overlap with DNA methylation profiles at corresponding loci. Remarkably, changes in methylation nearby and expression of the gene encoding cholecystokinin, which were inversely correlated to each other, were associated with variations in anxiety-related phenotypes. In conclusion, next to various behavioral alterations, we identified gene expression and DNA methylation profiles to be associated with TPH2 inactivation and its interaction with MS, suggesting a gene-by-environment interaction-dependent, modulatory function of brain 5-HT availability. KW - serotonin KW - maternal separation KW - mouse KW - emotional behavior KW - DNA methylation KW - RNA expression Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-201340 VL - 13 ER - TY - JOUR A1 - Wegener, Sonja A1 - Sauer, Otto A. T1 - The effective point of measurement for depth-dose measurements in small MV photon beams with different detectors JF - Medical Physics N2 - Purpose: The effective point of measurement (EPOM) of cylindrical ionization chambers differs from their geometric center. The exact shift depends on chamber construction details, above all the chamber size, and to some degree on the field-size and beam quality. It generally decreases as the chamber dimensions get smaller. In this work, effective points of measurement in small photon fields of a range of cylindrical chambers of different sizes are investigated, including small chambers that have not been studied previously. Methods: In this investigation, effective points of measurement for different ionization chambers (Farmer type, scanning chambers, micro-ionization chambers) and solid state detectors were determined by measuring depth-ionization curves in a 6 MV beam in field sizes between 2 9 2 cm2 and 10 9 10 cm2 and comparing those curves with curves measured with plane-parallel chambers. Results: It was possible to average the results to one shift per detector, as the results were sufficiently independent of the studied field sizes. For cylindrical ion chambers, shifts of the EPOM were determined to be between 0.49 and 0.30 times the inner chamber radius from the reference point. Conclusions: We experimentally confirmed the previously reported decrease of the EPOM shift with decreasing detector size. Highly accurate data for a large range of detectors, including new very small ones, were determined. Thus, small chambers noticeably differ from the 0.5-times to 0.6-times the inner chamber radius recommendations in current dosimetry protocols. The detector-individual EPOMs need to be considered for measurements of depth-dose curves. KW - depth dose curves KW - effective point of measurement KW - ionization chambers KW - micro-chambers Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-206148 VL - 46 IS - 11 ER - TY - JOUR A1 - Weber, Silvana A1 - Lorenz, Christopher A1 - Hemmings, Nicola T1 - Improving stress and positive mental health at work via an app-based intervention: a large-scale multi-center randomized control trial JF - Frontiers in Psychology N2 - Mobile health interventions (i.e., “apps”) are used to address mental health and are an increasingly popular method available to both individuals and organizations to manage workplace stress. However, at present, there is a lack of research on the effectiveness of mobile health interventions in counteracting or improving stress-related health problems, particularly in naturalistic, non-clinical settings. This project aimed at validating a mobile health intervention (which is theoretically grounded in the Job Demands-Resources Model) in preventing and managing stress at work. Within the mobile health intervention, employees make an evidence-based, personalized, psycho-educational journey to build further resources, and thus, reduce stress. A large-scale longitudinal randomized control trial, conducted with six European companies over 6 weeks using four measurement points, examined indicators of mental health via measures of stress, wellbeing, resilience, and sleep. The data were analyzed by means of hierarchical multilevel models for repeated measures, including both self-report measures and user behavior metrics from the app. The results (n = 532) suggest that using the mobile health intervention (vs. waitlist control group) significantly improved stress and wellbeing over time. Higher engagement in the intervention increased the beneficial effects. Additionally, use of the sleep tracking function led to an improvement in sleeping troubles. The intervention had no effects on measures of physical health or social community at work. Theoretical and practical implications of these findings are discussed, focusing on benefits and challenges of using technological solutions for organizations to support individuals’ mental health in the workplace. KW - stress KW - work KW - RCT KW - mental health KW - digital health KW - mobile health intervention KW - smartphone app Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-194337 SN - 1664-1078 VL - 10 IS - 2745 ER - TY - THES A1 - Weber, Manuel T1 - Action-based quantum Monte Carlo approach to fermion-boson models T1 - Wirkungsbasierte Quanten-Monte-Carlo-Methoden für Fermion-Boson-Modelle N2 - This work deals with the development and application of novel quantum Monte Carlo methods to simulate fermion-boson models. Our developments are based on the path-integral formalism, where the bosonic degrees of freedom are integrated out exactly to obtain a retarded fermionic interaction. We give an overview of three methods that can be used to simulate retarded interactions. In particular, we develop a novel quantum Monte Carlo method with global directed-loop updates that solves the autocorrelation problem of previous approaches and scales linearly with system size. We demonstrate its efficiency for the Peierls transition in the Holstein model and discuss extensions to other fermion-boson models as well as spin-boson models. Furthermore, we show how with the help of generating functionals bosonic observables can be recovered directly from the Monte Carlo configurations. This includes estimators for the boson propagator, the fidelity susceptibility, and the specific heat of the Holstein model. The algorithmic developments of this work allow us to study the specific heat of the spinless Holstein model covering its entire parameter range. Its key features are explained from the single-particle spectral functions of electrons and phonons. In the adiabatic limit, the spectral properties are calculated exactly as a function of temperature using a classical Monte Carlo method and compared to results for the Su-Schrieffer-Heeger model. N2 - Die vorliegende Arbeit beschäftigt sich mit der Entwicklung und Anwendung neuer Quanten-Monte-Carlo-Methoden zur Simulation von Fermion-Boson-Modellen. Grundlage für unsere Entwicklungen ist der Pfadintegralformalismus, in dem das exakte Ausintegrieren der bosonischen Freiheitsgrade zu einer retardierten fermionischen Wechselwirkung führt. Wir geben einen Überblick über drei Methoden, die für die Simulation retardierter Wechselwirkungen geeignet sind. Insbesondere entwickeln wir eine neue Quanten-Monte-Carlo-Methode mit globalen Updates, die das Autokorrelationsproblem früherer Ansätze löst und linear in der Systemgröße skaliert. Wir demonstrieren die Effizienz dieser Methode am Beispiel des Peierls-Übergangs im Holstein-Modell und diskutieren Erweiterungen auf andere Fermion-Boson-Modelle sowie Spin-Boson-Modelle. Des Weiteren zeigen wir, wie mithilfe erzeugender Funktionale bosonische Observablen direkt aus den Monte-Carlo-Konfigurationen berechnet werden können. Dies beinhaltet unter anderem den Boson-Propagator und die spezifische Wärme des Holstein-Modells. Die methodischen Entwicklungen dieser Arbeit erlauben es uns, die spezifische Wärme des spinlosen Holstein-Modells in seinem gesamten Parameterbereich zu untersuchen. Ihre wesentlichen Merkmale werden mithilfe der Einteilchenspektralfunktionen von Elektronen und Phononen erklärt. Im adiabatischen Grenzfall verwenden wir eine klassische Monte-Carlo-Methode, um die Temperaturabhängigkeit der Spektralfunktionen exakt zu berechnen, und vergleichen unsere Ergebnisse für das Holstein-Modell mit Resultaten für das Su-Schrieffer-Heeger-Modell. KW - Monte-Carlo-Simulation KW - Elektron-Phonon-Wechselwirkung KW - Peierls-Übergang KW - Thermodynamik KW - Pfadintegral KW - quantum Monte Carlo KW - Holstein model KW - specific heat KW - one-dimensional systems KW - Quanten-Monte-Carlo KW - Holstein-Modell KW - Spezifische Wärme KW - eindimensionale Systeme Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-157643 ER - TY - JOUR A1 - Walther, Grit A1 - Wagner, Lysett A1 - Kurzai, Oliver T1 - Updates on the taxonomy of Mucorales with an emphasis on clinically important taxa JF - Journal of Fungi N2 - Fungi of the order Mucorales colonize all kinds of wet, organic materials and represent a permanent part of the human environment. They are economically important as fermenting agents of soybean products and producers of enzymes, but also as plant parasites and spoilage organisms. Several taxa cause life-threatening infections, predominantly in patients with impaired immunity. The order Mucorales has now been assigned to the phylum Mucoromycota and is comprised of 261 species in 55 genera. Of these accepted species, 38 have been reported to cause infections in humans, as a clinical entity known as mucormycosis. Due to molecular phylogenetic studies, the taxonomy of the order has changed widely during the last years. Characteristics such as homothallism, the shape of the suspensors, or the formation of sporangiola are shown to be not taxonomically relevant. Several genera including Absidia, Backusella, Circinella, Mucor, and Rhizomucor have been amended and their revisions are summarized in this review. Medically important species that have been affected by recent changes include Lichtheimia corymbifera, Mucor circinelloides, and Rhizopus microsporus. The species concept of Rhizopus arrhizus (syn. R. oryzae) is still a matter of debate. Currently, species identification of the Mucorales is best performed by sequencing of the internal transcribed spacer (ITS) region. Ecologically, the Mucorales represent a diverse group but for the majority of taxa, the ecological role and the geographic distribution remain unknown. Understanding the biology of these opportunistic fungal pathogens is a prerequisite for the prevention of infections, and, consequently, studies on the ecology of the Mucorales are urgently needed. KW - Mucorales KW - taxonomy KW - pathogens KW - identification KW - ecology KW - Circinella KW - Lichtheimia KW - Mucor KW - Rhizomucor KW - Rhizopus Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-193081 SN - 2309-608X VL - 5 IS - 4 ER - TY - THES A1 - Walter, Jürgen Christian T1 - Automation in Software Performance Engineering Based on a Declarative Specification of Concerns T1 - Automatisierung im Software-Performance-Engineering basierend auf einer deklarativen Beschreibung von Performance-Anliegen N2 - Software performance is of particular relevance to software system design, operation, and evolution because it has a significant impact on key business indicators. During the life-cycle of a software system, its implementation, configuration, and deployment are subject to multiple changes that may affect the end-to-end performance characteristics. Consequently, performance analysts continually need to provide answers to and act based on performance-relevant concerns. To ensure a desired level of performance, software performance engineering provides a plethora of methods, techniques, and tools for measuring, modeling, and evaluating performance properties of software systems. However, the answering of performance concerns is subject to a significant semantic gap between the level on which performance concerns are formulated and the technical level on which performance evaluations are actually conducted. Performance evaluation approaches come with different strengths and limitations concerning, for example, accuracy, time-to-result, or system overhead. For the involved stakeholders, it can be an elaborate process to reasonably select, parameterize and correctly apply performance evaluation approaches, and to filter and interpret the obtained results. An additional challenge is that available performance evaluation artifacts may change over time, which requires to switch between different measurement-based and model-based performance evaluation approaches during the system evolution. At model-based analysis, the effort involved in creating performance models can also outweigh their benefits. To overcome the deficiencies and enable an automatic and holistic evaluation of performance throughout the software engineering life-cycle requires an approach that: (i) integrates multiple types of performance concerns and evaluation approaches, (ii) automates performance model creation, and (iii) automatically selects an evaluation methodology tailored to a specific scenario. This thesis presents a declarative approach —called Declarative Performance Engineering (DPE)— to automate performance evaluation based on a humanreadable specification of performance-related concerns. To this end, we separate the definition of performance concerns from their solution. The primary scientific contributions presented in this thesis are: A declarative language to express performance-related concerns and a corresponding processing framework: We provide a language to specify performance concerns independent of a concrete performance evaluation approach. Besides the specification of functional aspects, the language allows to include non-functional tradeoffs optionally. To answer these concerns, we provide a framework architecture and a corresponding reference implementation to process performance concerns automatically. It allows to integrate arbitrary performance evaluation approaches and is accompanied by reference implementations for model-based and measurement-based performance evaluation. Automated creation of architectural performance models from execution traces: The creation of performance models can be subject to significant efforts outweighing the benefits of model-based performance evaluation. We provide a model extraction framework that creates architectural performance models based on execution traces, provided by monitoring tools.The framework separates the derivation of generic information from model creation routines. To derive generic information, the framework combines state-of-the-art extraction and estimation techniques. We isolate object creation routines specified in a generic model builder interface based on concepts present in multiple performance-annotated architectural modeling formalisms. To create model extraction for a novel performance modeling formalism, developers only need to write object creation routines instead of creating model extraction software from scratch when reusing the generic framework. Automated and extensible decision support for performance evaluation approaches: We present a methodology and tooling for the automated selection of a performance evaluation approach tailored to the user concerns and application scenario. To this end, we propose to decouple the complexity of selecting a performance evaluation approach for a given scenario by providing solution approach capability models and a generic decision engine. The proposed capability meta-model enables to describe functional and non-functional capabilities of performance evaluation approaches and tools at different granularities. In contrast to existing tree-based decision support mechanisms, the decoupling approach allows to easily update characteristics of solution approaches as well as appending new rating criteria and thereby stay abreast of evolution in performance evaluation tooling and system technologies. Time-to-result estimation for model-based performance prediction: The time required to execute a model-based analysis plays an important role in different decision processes. For example, evaluation scenarios might require the prediction results to be available in a limited period of time such that the system can be adapted in time to ensure the desired quality of service. We propose a method to estimate the time-to-result for modelbased performance prediction based on model characteristics and analysis parametrization. We learn a prediction model using performancerelevant features thatwe determined using statistical tests. We implement the approach and demonstrate its practicability by applying it to analyze a simulation-based multi-step performance evaluation approach for a representative architectural performance modeling formalism. We validate each of the contributions based on representative case studies. The evaluation of automatic performance model extraction for two case study systems shows that the resulting models can accurately predict the performance behavior. Prediction accuracy errors are below 3% for resource utilization and mostly less than 20% for service response time. The separate evaluation of the reusability shows that the presented approach lowers the implementation efforts for automated model extraction tools by up to 91%. Based on two case studies applying measurement-based and model-based performance evaluation techniques, we demonstrate the suitability of the declarative performance engineering framework to answer multiple kinds of performance concerns customized to non-functional goals. Subsequently, we discuss reduced efforts in applying performance analyses using the integrated and automated declarative approach. Also, the evaluation of the declarative framework reviews benefits and savings integrating performance evaluation approaches into the declarative performance engineering framework. We demonstrate the applicability of the decision framework for performance evaluation approaches by applying it to depict existing decision trees. Then, we show how we can quickly adapt to the evolution of performance evaluation methods which is challenging for static tree-based decision support systems. At this, we show how to cope with the evolution of functional and non-functional capabilities of performance evaluation software and explain how to integrate new approaches. Finally, we evaluate the accuracy of the time-to-result estimation for a set of machinelearning algorithms and different training datasets. The predictions exhibit a mean percentage error below 20%, which can be further improved by including performance evaluations of the considered model into the training data. The presented contributions represent a significant step towards an integrated performance engineering process that combines the strengths of model-based and measurement-based performance evaluation. The proposed performance concern language in conjunction with the processing framework significantly reduces the complexity of applying performance evaluations for all stakeholders. Thereby it enables performance awareness throughout the software engineering life-cycle. The proposed performance concern language removes the semantic gap between the level on which performance concerns are formulated and the technical level on which performance evaluations are actually conducted by the user. N2 - Die Performanz von Software ist von herausgehobener Relevanz für das Design, den Betrieb und die Evolution von Softwaresystemen, da sie den Geschäftserfolg stark beinflusst. Während des Softwarelebenszyklus ändern sich die Implementierung und die Art der Bereitstellung mehrfach, was jeweils das Ende-zu-Ende Verhalten bezüglich der Performanz beeinflussen kann. Folglich muss sich kontinuierlich mit Fragestellungen der Leistungsbewertung beschäftigt werden. Um performantes Verhalten sicherzustellen gibt es im “Software Performance Engineering” bereits eine Vielzahl an Methoden, Techniken und Werkzeugen um Performanzeigenschaften von Softwaresystemen zu messen, zu modellieren und zu evaluieren. Jedoch unterliegt die Beantwortung von konkreten Fragestellungen einem Missverhältnis zwischen dem einfachen Formulieren von Fragestellungen und dem sehr technischen Level auf dem die Fragen beantwortet werden. Verfahren zur Bestimmung von Performanzmetriken haben unterschiedliche Stärken und Einschränkungen, u.a. bezüglich Genauigkeit, Lösungsgeschwindigkeit oder der erzeugten Last auf dem System. Für die beteiligten Personen ist es ein nicht-trivialer Prozess ein passendes Verfahren zur Performanzevaluation auszuwählen, es sinnvoll zu parametrisieren, auszuführen, sowie die Ergebnisse zu filtern und zu interpretieren. Eine zusätzliche Herausforderung ist, dass sich die Artefakte, um die Leistung eines Systemes zu evaluieren, im zeitlichen Verlauf ändern, was einenWechsel zwischen messbasierten und modellbasierten Verfahren im Rahmen der Systemevolution nötig macht. Bei der modellbasierten Analyse kann zudem der Aufwand für die Erstellung von Performance-Modellen den Nutzen überwiegen. Um die genannten Defizite zu überwinden und eine ganzheitliche, automatisierte Evaluierung der Leistung während des Software-Entwicklungszyklus zu erreichen ist ein Ansatz von Nöten, der: (i) unterschiedliche Arten von Performanzanliegen und Evaluationsmethoden integriert, (ii) die Erstellung von Performanzmodellen automatisiert und (iii) automatisch eine Methodik zur Evaluation zugeschnitten auf ein spezielles Analyseszenario auswählt. Diese Arbeit präsentiert einen beschreibenden Ansatz, Declarative Performance Engineering (DPE) genannt, um die Evaluation von Performanzfragestellungen basierend auf einem menschenlesbaren Spezifikation zu automatisieren. Zu diesem Zweck trennen wir die Spezifikation von Performanzanliegen von deren Beantwortung. Die wissenschaftlichen Hauptbeiträge dieser Arbeit sind: Eine beschreibende Sprache um performanzrelevante Fragestellungen auszudrücken und ein Framework um diese zu beantworten: Wir präsentieren eine Sprache, um Performanzanliegen unabhängig von der Evaluationsmethodik zu beschreiben. Neben der Spezifikation von funktionalen Aspekten können auch nicht-funktionale Abwägungsentscheidungen beschrieben werden. Um die spezifizierten Anliegen zu beantworten präsentieren wir eine Frameworkarchitektur und eine entsprechende Referenzimplementierung,um Anliegen automatisch zu beantworten. Das Framework bietet die Möglichkeit beliebige Evaluationsmethodiken zu integrieren und wird ergänzt durch Referenzimplementierungen zur messbasierten und modellbasierten Performanzevaluation. Automatische Extraktion von architekturellen Performanzemodellen aus Messdatenzur Anwendungsperformanz: Der signifikante Aufwand zur Erstellung von Performanzmodellen kann deren Vorteile überlagern. Wir schlagen einen Framework zur automatischen Erstellung vor, welches Modelle aus Messdaten extrahiert. Das präsentierte Framework trennt das Lernen von generischen Aspekten von Modellerstellungsroutinen. Um generische Aspekte zu lernen kombiniert unser Framework modernste Extraktionsund Schätztechniken. Wir isolieren Objekterstellungsroutinen, die in einer generischen Schnittstelle zur Modellerzeugung angegeben sind, basierend auf Konzepten die in mehreren Performanz-annotierten Architekturmodellen vorhanden sind. Um eine Modellextraktion für einen neuen Formalismus zu erstellen müssen Entwickler müssen nur die Erstellung von Objekterstellungsroutinen schreiben statt eine Modell-Extraktionssoftware von Grund auf neu zu schreiben. Automatisierte und erweiterbare Entscheidungsunterstützung für Leistungsbewertungsansätze: Wir präsentieren eine Methodik und Werkzeuge für die automatisierte Auswahl eines auf die Belange und Anwendungenszenarien der Benutzer zugeschnittenen Leistungsbewertungsansatzes. Zu diesem Zweck schlagen wir vor, die Komplexität der Auswahl eines Leistungsbewertungsansatzes für ein gegebenes Szenario zu entkoppeln. Dies geschieht durch Bereitstellung von Fähigkeitsmodellen für die Lösungsansätze und einen generische Entscheidungsmechanismus. Das vorgeschlagene Fähigkeits-Metamodell ermöglicht es, funktionale und nichtfunktionale Fähigkeiten von Leistungsbewertungsansätzen und Werkzeugen in verschiedenen Granularitäten zu modellieren. Im Gegensatz zu bestehenden baumbasierten Entscheidungensmechanismen ermöglicht unser Ansatz die einfache Aktualisierung von Merkmalen von Lösungsansätzen sowie das Hinzufügen neuer Bewertungskriterien und kann dadurch einfach aktuell gehalten werden. Eine Methode zur Schätzung der Analysezeit für die modellbasierte Leistungsvorhersage: Die Zeit, die für die Durchführung einer modellbasierten Analyse benötigt wird, spielt in verschiedenen Entscheidungsprozessen eine wichtige Rolle. Beispielsweise können Auswertungsszenarien erfordern, dass die Vorhersageergebnisse in einem begrenzten Zeitraum zur Verfügung stehen, so dass das System rechtzeitig angepasst werden kann, um die Dienstgüte sicherzustellen.Wir schlagen eine Methode vor, um die Zeit bis zum Ergebnis für modellbasierte Leistungsvorhersage basierend auf Modelleigenschaften und Analyseparametrisierung zu schätzen. Wir lernen ein Vorhersagemodell anhand von leistungsrelevanten Merkmalen, die wir mittels statistischer Tests ermittelt haben. Wir implementieren den Ansatz und demonstrieren seine Praktikabilität, indem wir ihn auf einen mehrstufiger Leistungsbewertungsansatz anwenden. Wir validieren jeden der Beiträge anhand repräsentativer Fallstudien. Die Evaluierung der Leistungsmodellextraktion für mehrere Fallstudiensysteme zeigt, dass die resultierenden Modelle das Leistungsverhalten genau vorhersagen können. Fehler bei der Vorhersagegenauigkeit liegen für die Ressourcennutzung unter 3% und meist weniger als 20% für die Service-Reaktionszeit. Die getrennte Bewertung derWiederverwendbarkeit zeigt, dass der Implementierungsaufwand zur Erstellung von Modellextraktionswerkzeugen um bis zu 91% gesenkt werden kann. Wir zeigen die Eignung unseres Framworks zur deklarativen Leistungsbewertung basierend auf zwei Fallstudien die mess- und model-basierte Leistungsbewertungstechniken zur Beantwortung verschiedenster Performance-Anliegen zugeschnitten auf Nutzerbedürfnisse anwenden. Anschließend diskutieren wir die Einsparungen durch den integrierten und automatisierten Ansatz. Des weiteren untersuchen wir die Vorteile der Integration vonweiteren Leistungsbewertungsansätzen in den deklarativen Ansatz.Wir demonstrieren die Anwendbarkeit unseres Entscheidungsframeworks für Leistungsbewertungsansätze, indem wir den Stand der Technik für Entscheidungsunterstützung abbilden. Anschließend zeigen wir die leichte Anpassbarkeit, was für baumbasierte Entscheidungsunterstützungssysteme eine signifikante Herausforderung darstellt. Hierbei zeigen wir wie man Änderungen funktionaler und nichtfunktionaler Fähigkeiten von Leistungsbewertungssoftware sowie neue Ansätze integriert. Abschließend bewerten wir die Genauigkeit der Zeit-zu-Ergebnis-Schätzung für eine Reihe von maschinellen Lernalgorithmen und verschiedenen Trainingsdatensätzen. Unser Vorhersagen zeigen einen mittleren prozentualen Fehler von weniger als 20%, die weiter verbessert werden können durch Berücksichtigung von Leistungsbewertungen des betrachteten Modells in den Trainingsdaten. Die vorgestellten Beiträge sind ein bedeutender Schritt hin zu einem integrierten Performance-Engineering-Prozess, der die Stärken von modellbasierter und messbasierter Leistungsbewertung kombiniert. Die vorgeschlagene Sprache um Performanzanliegen zu spezifizieren reduziert in Verbindung mit dem Beantwortungsframework die Komplexität der Anwendung von Leistungsbewertungen für alle Beteiligten deutlich und ermöglicht dadurch ein Leistungsbewusstsein im gesamten Softwarelebenszyklus. Damit entfernt die vorgeschlagene Sprache die Diskrepanz zwischen einem einfachen Fragen bezüglich der Leistung und der sehr technische Ebene auf der Leistungsbewertungen tatsächlich ausgeführt werden. KW - Software KW - Declarative Performance Engineering KW - Model-based Performance Prediction KW - Measurement-based Analysis KW - Decision Support KW - Leistungsbewertung KW - Software Performance Engineering Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-180904 ER - TY - JOUR A1 - Wallmann-Sperlich, Birgit A1 - Hoffmann, Sophie A1 - Salditt, Anne A1 - Bipp, Tanja A1 - Froboese, Ingo T1 - Moving to an “active” biophilic designed office workplace: a pilot study about the effects on sitting time and sitting habits of office-based workers JF - International Journal of Environmental Research and Public Health N2 - Promising initial insights show that offices designed to permit physical activity (PA) may reduce workplace sitting time. Biophilic approaches are intended to introduce natural surroundings into the workplace, and preliminary data show positive effects on stress reduction and elevated productivity within the workplace. The primary aim of this pilot study was to analyze changes in workplace sitting time and self-reported habit strength concerning uninterrupted sitting and PA during work, when relocating from a traditional office setting to “active” biophilic-designed surroundings. The secondary aim was to assess possible changes in work-associated factors such as satisfaction with the office environment, work engagement, and work performance, among office staff. In a pre-post designed field study, we collected data through an online survey on health behavior at work. Twelve participants completed the survey before (one-month pre-relocation, T1) and twice after the office relocation (three months (T2) and seven months post-relocation (T3)). Standing time per day during office hours increased from T1 to T3 by about 40 min per day (p < 0.01). Other outcomes remained unaltered. The results suggest that changing office surroundings to an active-permissive biophilic design increased standing time during working hours. Future larger-scale controlled studies are warranted to investigate the influence of office design on sitting time and work-associated factors during working hours in depth. KW - desk-based KW - office-workers KW - standing KW - online survey KW - walking KW - work engagement KW - habit strength KW - work performance KW - office environment Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-197371 SN - 1660-4601 VL - 16 IS - 9 ER - TY - JOUR A1 - Wajant, Harald A1 - Siegmund, Daniela T1 - TNFR1 and TNFR2 in the control of the life and death balance of macrophages JF - Frontiers in Cell and Developmental Biology N2 - Macrophages stand in the first line of defense against a variety of pathogens but are also involved in the maintenance of tissue homeostasis. To fulfill their functions macrophages sense a broad range of pathogen- and damage-associated molecular patterns (PAMPs/DAMPs) by plasma membrane and intracellular pattern recognition receptors (PRRs). Intriguingly, the overwhelming majority of PPRs trigger the production of the pleiotropic cytokine tumor necrosis factor-alpha (TNF). TNF affects almost any type of cell including macrophages themselves. TNF promotes the inflammatory activity of macrophages but also controls macrophage survival and death. TNF exerts its activities by stimulation of two different types of receptors, TNF receptor-1 (TNFR1) and TNFR2, which are both expressed by macrophages. The two TNF receptor types trigger distinct and common signaling pathways that can work in an interconnected manner. Based on a brief general description of major TNF receptor-associated signaling pathways, we focus in this review on research of recent years that revealed insights into the molecular mechanisms how the TNFR1-TNFR2 signaling network controls the life and death balance of macrophages. In particular, we discuss how the TNFR1-TNFR2 signaling network is integrated into PRR signaling. KW - apoptosis KW - necroptosis KW - TNF KW - TNFR1 KW - TNFR2 KW - ripk1 KW - ripk3 KW - caspase-8 Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-201551 VL - 7 IS - 91 ER - TY - JOUR A1 - Wajant, Harald A1 - Beilhack, Andreas T1 - Targeting regulatory T cells by addressing tumor necrosis factor and its receptors in allogeneic hematopoietic cell transplantation and cancer JF - Frontiers in Immunology N2 - An intricate network of molecular and cellular actors orchestrates the delicate balance between effector immune responses and immune tolerance. The pleiotropic cytokine tumor necrosis factor-alpha (TNF) proves as a pivotal protagonist promoting but also suppressing immune responses. These opposite actions are accomplished through specialist cell types responding to TNF via TNF receptors TNFR1 and TNFR2. Recent findings highlight the importance of TNFR2 as a key regulator of activated natural FoxP3+ regulatory T cells (Tregs) in inflammatory conditions, such as acute graft-vs.-host disease (GvHD) and the tumor microenvironment. Here we review recent advances in our understanding of TNFR2 signaling in T cells and discuss how these can reconcile seemingly conflicting observations when manipulating TNF and TNFRs. As TNFR2 emerges as a new and attractive target we furthermore pinpoint strategies and potential pitfalls for therapeutic targeting of TNFR2 for cancer treatment and immune tolerance after allogeneic hematopoietic cell transplantation. KW - GVHD KW - graft vs. host disease KW - cancer KW - Tregs (regulatory T cells) KW - TNFR family costimulatory receptors KW - TNFR2 agonists KW - TNFR2 antagonism Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-201578 VL - 10 IS - 2040 ER - TY - JOUR A1 - Wajant, Harald T1 - Molecular mode of action of TRAIL receptor agonists—common principles and their translational exploitation JF - Cancers N2 - Tumor necrosis factor-related apoptosis-inducing ligand (TRAIL) and its death receptors TRAILR1/death receptor 4 (DR4) and TRAILR2/DR5 trigger cell death in many cancer cells but rarely exert cytotoxic activity on non-transformed cells. Against this background, a variety of recombinant TRAIL variants and anti-TRAIL death receptor antibodies have been developed and tested in preclinical and clinical studies. Despite promising results from mice tumor models, TRAIL death receptor targeting has failed so far in clinical studies to show satisfying anti-tumor efficacy. These disappointing results can largely be explained by two issues: First, tumor cells can acquire TRAIL resistance by several mechanisms defining a need for combination therapies with appropriate sensitizing drugs. Second, there is now growing preclinical evidence that soluble TRAIL variants but also bivalent anti-TRAIL death receptor antibodies typically require oligomerization or plasma membrane anchoring to achieve maximum activity. This review discusses the need for oligomerization and plasma membrane attachment for the activity of TRAIL death receptor agonists in view of what is known about the molecular mechanisms of how TRAIL death receptors trigger intracellular cell death signaling. In particular, it will be highlighted which consequences this has for the development of next generation TRAIL death receptor agonists and their potential clinical application. KW - antibody KW - antibody fusion proteins KW - apoptosis KW - cancer therapy KW - cell death KW - death receptors KW - TNF superfamily KW - TNF receptor superfamily KW - TRAIL Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-202416 VL - 11 IS - 7 ER - TY - JOUR A1 - Wajant, Harald T1 - Molecular mode of action of TRAIL receptor agonists—common principles and their translational exploitation JF - Cancers N2 - Tumor necrosis factor-related apoptosis-inducing ligand (TRAIL) and its death receptors TRAILR1/death receptor 4 (DR4) and TRAILR2/DR5 trigger cell death in many cancer cells but rarely exert cytotoxic activity on non-transformed cells. Against this background, a variety of recombinant TRAIL variants and anti-TRAIL death receptor antibodies have been developed and tested in preclinical and clinical studies. Despite promising results from mice tumor models, TRAIL death receptor targeting has failed so far in clinical studies to show satisfying anti-tumor efficacy. These disappointing results can largely be explained by two issues: First, tumor cells can acquire TRAIL resistance by several mechanisms defining a need for combination therapies with appropriate sensitizing drugs. Second, there is now growing preclinical evidence that soluble TRAIL variants but also bivalent anti-TRAIL death receptor antibodies typically require oligomerization or plasma membrane anchoring to achieve maximum activity. This review discusses the need for oligomerization and plasma membrane attachment for the activity of TRAIL death receptor agonists in view of what is known about the molecular mechanisms of how TRAIL death receptors trigger intracellular cell death signaling. In particular, it will be highlighted which consequences this has for the development of next generation TRAIL death receptor agonists and their potential clinical application. KW - antibody KW - antibody fusion proteins KW - apoptosis KW - cancer therapy KW - cell death KW - death receptors KW - TNF superfamily KW - TNF receptor superfamily KW - TRAIL Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-201833 N1 - Zugriff gesperrt. Zugriff auf den Volltext erhalten Sie unter https://nbn-resolving.org/urn:nbn:de:bvb:20-opus-202416 VL - 11 IS - 7 ER - TY - JOUR A1 - Waider, Jonas A1 - Popp, Sandy A1 - Mlinar, Boris A1 - Montalbano, Alberto A1 - Bonfiglio, Francesco A1 - Aboagye, Benjamin A1 - Thuy, Elisabeth A1 - Kern, Raphael A1 - Thiel, Christopher A1 - Araragi, Naozumi A1 - Svirin, Evgeniy A1 - Schmitt-Böhrer, Angelika G. A1 - Corradetti, Renato A1 - Lowry, Christopher A. A1 - Lesch, Klaus-Peter T1 - Serotonin deficiency increases context-dependent fear learning through modulation of hippocampal activity JF - Frontiers in Neuroscience N2 - Brain serotonin (5-hydroxytryptamine, 5-HT) system dysfunction is implicated in exaggerated fear responses triggering various anxiety-, stress-, and trauma-related disorders. However, the underlying mechanisms are not well understood. Here, we investigated the impact of constitutively inactivated 5-HT synthesis on context-dependent fear learning and extinction using tryptophan hydroxylase 2 (Tph2) knockout mice. Fear conditioning and context-dependent fear memory extinction paradigms were combined with c-Fos imaging and electrophysiological recordings in the dorsal hippocampus (dHip). Tph2 mutant mice, completely devoid of 5-HT synthesis in brain, displayed accelerated fear memory formation and increased locomotor responses to foot shock. Furthermore, recall of context-dependent fear memory was increased. The behavioral responses were associated with increased c-Fos expression in the dHip and resistance to foot shock-induced impairment of hippocampal long-term potentiation (LTP). In conclusion, increased context-dependent fear memory resulting from brain 5-HT deficiency involves dysfunction of the hippocampal circuitry controlling contextual representation of fear-related behavioral responses. KW - tryptophan hydroxylase 2 KW - knockout KW - fear learning KW - extinction KW - long-term potentiation KW - hippocampus KW - immediate-early gene KW - serotonin deficiency Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-196077 SN - 1662-453X VL - 13 IS - 245 ER - TY - THES A1 - Wahl, Joachim T1 - The Use of Ionic Liquids in Capillary Electrophoresis Enantioseparation T1 - Die Nutzung Ionischer Flüssigkeiten in der kapillarelektrophoretischen Enantiomerentrennung N2 - Two chiral chemical molecules being mirror images of each other, also referred to as enantiomers, may have different pharmacokinetic, pharmacodynamic, and toxicological effects. Thus, pharmaceutical manufacturers and authorities are increasingly interested in the approval of enantiopure drugs. However, the isomeric purity and the limits for isomeric impurities have to be specified applying enantioselective analytical methods, such as capillary electrophoresis. The separation of enantiomers in capillary electrophoresis may be improved by the addition of ionic liquids to the background electrolyte. The aim of this work was to investigate the influence of different separation conditions on the enantioseparation of phenethylamines in background electrolytes containing ionic liquids based on tetrabutylammonium cations. Best chiral separations were achieved at acidic pH values using phosphate buffers containing 125 mmol/L tetrabutylammonium based salts. Different reasons explaining enhanced enantioseparations in buffers containing ionic liquids were found. First, due to an improvement of the cyclodextrin solubility, the addition of ionic liquids to the background electrolyte enables the use of higher concentrations of these chiral selector. Furthermore, the adsorption of tetrabutylammonium cations to the negatively charged capillary surface results in a reduction of the electroosmotic flow. Hence, the resulting prolongation of migration times leads to a longer period of time for the separation of temporarily formed diastereomeric analyte cyclodextrin complexes, which yields improved enantioseparation. Additionally, due to a decrease of the adsorption of positively charged phenethylamine analyte molecules to capillary surface silanol groups, the adsorption of ionic liquid cations inhibits peak broadening. A further reason explaining an enhanced enantioseparation by the addition of ionic liquids to the background electrolyte is a competition between tetrabutylammonium cations and analyte enantiomers for the inclusion into cyclodextrin cavities. Furthermore, the influence of different chiral counterions, combined with tetrabutylammonium cations, on the enantioseparation of phenethylamines was investigated. Solely anions based on the basic proteinogenic amino acids L lysine and L arginine yielded chiral separation results superior to those achieved using achiral tetrabutylammonium chloride as background electrolyte additive. Especially the application of tetrabutylammonium L argininate gave very good enantioseparations of all investigated ephedrine derivatives, which might be explained by the ability of L arginine to affect the formation of complexes between analytes and cyclodextrins. Besides the investigation of the influence of ionic liquids on the enantioseparation, complexes between phenethylamine enantiomers and β cyclodextrin derivatives were characterized by affinity capillary electrophoresis. The binding constants between analyte enantiomers and cyclodextrins and the electrophoretic mobilities of the temporarily formed complexes were determined and compared to the observed chiral resolution values. While neither the calculated binding constants nor their differences correlated with the quality of the enantioseparation, a strong correlation between the differences of the electrophoretic mobilities of the complexes and the chiral resolution values was found. N2 - Chemische Moleküle, die sich zueinander wie Bild und Spiegelbild verhalten, so genannte Enantiomere, können im menschlichen Organismus unterschiedliche pharmakodynamische und toxikologische Wirkungen zeigen. Aus diesem Grund legen pharmazeutische Unternehmen und Arzneimittelbehörden vermehrten Wert auf die Zulassung enantiomerenreiner Arzneistoffe. Da sowohl die Reinheit eines Enantiomers als auch der Gehalt an isomeren Verunreinigungen spezifiziert werden müssen, besteht ein zunehmender Bedarf an analytischen Methoden zur Enantiomerentrennung, wie zum Beispiel der Kapillarelektrophorese. Das Ziel dieser Arbeit war die Verbesserung der kapillarelektrophoretischen Enantiomerentrennung von Ephedrin Derivaten unter Zuhilfenahme von auf Tetrabutylammonium basierenden Ionische Flüssigkeiten. Der Einfluss diverser Parameter auf die Trennung von Phenethylamin-Enantiomeren in Puffern, die Ionische Flüssigkeiten enthalten, wurde systematisch untersucht. Dabei konnten die besten Trennergebnisse unter stark sauren Bedingungen in Phosphatpuffern, die 125 mmol/L Tetrabutylammonium Salze enthielten, erreicht werden. Verschiedene Faktoren, die zu einer Verbesserung der Enantiomerentrennung führten, konnten festgestellt werden. Erstens wurde eine Verbesserung der Cyclodextrin-Löslichkeit durch die Zugabe von Ionischen Flüssigkeiten zum Trennpuffer festgestellt. Dies ermöglicht eine Verwendung höherer Konzentrationen dieser chiralen Selektoren. Des Weiteren führt eine Anlagerung von Tetrabutylammonium-Kationen an die negativ geladene Oberfläche der Kapillare zu einer Reduktion des elektroosmotischen Flusses. Daraus resultiert einerseits eine Verlängerung der Migrationszeiten, die bewirkt, dass eine längere Zeit zur Trennung der temporär gebildeten diastereomeren Cyclodextrin-Einlagerungskomplexe zur Verfügung steht. Andererseits wird durch die Adsorption von Tetrabutylammonium-Kationen an die Kapillarwand die Anlagerung von positiv geladenen Phenethylamin-Analyten an die Silanoloberfläche verhindert. Dies führt durch eine Reduktion der Peakbreite zu einer Verbesserung der Trennergebnisse. Als dritter Grund für verbesserte Trennungen nach Zugabe von Ionischer Flüssigkeit zum Trennpuffer kann ein kompetitiver Mechanismus zwischen Analyt Enantiomeren und Tetrabutylammonium-Kationen um den Einschluss in Cyclodextrine aufgeführt werden. Zusätzlich wurde der Einfluss verschiedener chiraler Gegenionen, die mit Tetrabutylammonium-Kationen kombiniert wurden, auf die Trennung von Phenethylamin-Enantiomeren untersucht. Dabei konnte ausschließlich unter Verwendung von Anionen der basischen proteinogenen Aminosäuren L Lysin und L Arginin eine Verbesserung der Trennung beobachtet werden. Vor allem die Verwendung von L Arginin, für welches eine Beeinflussung der Komplexbildung zwischen Analyten und Cyclodextrin vermutet wird, ergab eine starke Verbesserung der Trennung aller Ephedrin Derivate. Neben der Untersuchung des Einflusses von Ionischen Flüssigkeiten auf die kapillarelektrophoretische Trennung wurde auch die Komplexbildung zwischen Phenethylamin-Enantiomeren und verschiedenen β Cyclodextrin Derivaten mittels Affinitätskapillarelektro-phorese untersucht. Die Bindungskonstanten zwischen Analyt-Enantiomeren und Cyclodextrinen und die elektrophoretische Mobilität der gebildeten Komplexe wurden bestimmt und mit den dabei beobachteten chiralen Trennungen verglichen. Dabei konnte eine starke Korrelation zwischen den Unterschieden in den elektrophoretischen Mobilitäten der Komplexe und der Güte der Enantiomerentrennung festgestellt werden, während kein Zusammenhang zwischen den Bindungskonstanten, beziehungsweise deren Differenzen, und der chiralen Auflösung zwischen Phenethylamin Enantiomeren zu beobachten war. KW - Capillary Electrophoresis KW - Ionic Liquid KW - Kapillarelektrophorese KW - Enantiomerentrennung KW - Ionische Flüssigkeit Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-176397 ER - TY - THES A1 - Wagner, Wolfgang T1 - Supramolecular Block Copolymers by Seeded Living Supramolecular Polymerization of Perylene Bisimides T1 - Supramolekulare Blockcopolymere von Perylenbisimiden mittels saat-induzierter lebender supramolekularer Polymerisation N2 - The research on supramolecular polymerization has undergone a rapid development in the last two decades, particularly since supramolecular polymers exhibit a broad variety of functionalities and applications in organic electronics, biological science or as functional materials (Chapter 2.1). Although former studies have focused on investigation of the thermodynamics of supramolecular polymerization (Chapter 2.2), the academic interest in the recent years shifted towards gaining insight into kinetically controlled self-assembly and pathway complexity to generate novel out-of-equilibrium architectures with interesting nanostructures and features (Chapter 2.3). Along this path, the concepts of seeded and living supramolecular polymerization were recently developed to enable the formation of supramolecular polymers with controlled length and low polydispersity under precise kinetic control (Chapter 2.4). Besides that, novel strategies were developed to achieve supramolecular copolymerization resulting in complex multicomponent nanostructures with different structural motives. The classification of these supramolecular copolymers on the basis of literature examples and an overview of previously reported principles to create such supramolecular architectures are provided in Chapter 2.5. The aim of the thesis was the non-covalent synthesis of highly desirable supramolecular block copolymers by the approach of living seeded supramolecular polymerization and to study the impact of the molecular shape of the monomeric building blocks on the supramolecular copolymerization. Based on the structure of the previously investigated PBI organogelator H-PBI a series of novel PBIs, bearing identical hydrogen-bonding amide side-groups in imide-position and various kind or number of substituents in bay-position, was synthesized and analyzed within this thesis. The new PBIs were successfully obtained in three steps starting from the respective bromo-substituted perylene-3,4:9,10-tetracarboxylic acid tetrabutylesters or from the N,N’-dicyclohexyl-1,7-dibromoperylene-3,4:9,10-tetracarboxylic acid bisimide. All target compounds were obtained in the final step by imidization reactions of the respective perylene tetracarboxylic acid bisanhydride precursors with N-(2-aminoethyl)-3,4,5-tris(dodecyloxy)-benzamide and were fully characterized by 1H and 13C NMR spectroscopy as well as high resolution mass spectrometry. The variation of bay-substituents strongly changes the optical properties of the monomeric PBIs which were investigated by UV/vis and fluorescence spectroscopy. The increase of the number of the methoxy-substituents provokes, for example, a red-shift of the absorption maxima concomitant with a decrease of extinction coefficients and leads to a drastic increase of the fluorescence quantum yields. Furthermore, the molecular geometry of the PBIs is also affected by variations of the bay-substituents. Thus, increasing the steric demand of the bay-substituents leads to an enlargement of the twist angles of the PBI cores as revealed by DFT calculations. Especially the 1,7-dimethoxy bay-substituted MeO-PBI proved to be very well-suited for the studies envisioned within this thesis. The self-assembly of this PBI derivative was analyzed in detail by UV/vis, fluorescence and FT-IR spectroscopy as well as atomic force microscopy (Chapter 3). These studies revealed that MeO-PBI forms in a solvent mixture of methylcyclohexane and toluene (2:1, v/v) kinetically trapped off-pathway H-aggregated nanoparticles upon fast cooling of a monomeric solution from 90 to 20 °C. However, upon slow cooling of the monomer solution fluorescent J-type nanofibers are formed by π π interactions and intermolecular hydrogen-bonding. The kinetically metastable off-pathway H-aggregates can be transformed into the thermodynamically more favored J-type aggregates by addition of seeds, which are produced by ultrasonication of the polymeric nanofibers. Interestingly, the living character of this seed-induced supramolecular polymerization process was proven by a newly designed multicycle polymerization experimental protocol. This living polymerization experiment clearly proves, that the polymerization can only occur at the “active” ends of the polymeric seed and that almost no recombination or chain termination processes are present. Hence, the approach of living supramolecular polymerization enables the formation of supramolecular polymers with controlled length and narrow polydispersity. In Chapter 4 the copolymerization of MeO-PBI with the structurally similar 1,7-dichloro (Cl-PBI) and 1,7-dimethylthio (MeS-PBI) bay-substituted PBIs is studied in detail. Both PBIs form analogous to MeO-PBI kinetically trapped off-pathway aggregates, which can be converted into the thermodynamically stable supramolecular polymers by seed-induced living supramolecular polymerization under precise kinetic control. However, the stability of the kinetically trapped aggregates of Cl-PBI and MeS-PBI is distinctly reduced compared to that of MeO-PBI, because the π-π-interactions of the kinetically metastable aggregates are hampered through the increased twisting of the PBI-cores of the former PBIs. UV/vis studies revealed that the two-component seeded copolymerization of the kinetically trapped state of MeO-PBI with seeds of Cl-PBI leads to the formation of unprecedented supramolecular block copolymers with A-B-A pattern by a living supramolecular polymerization process at the termini of the seeds. Remarkably, the resulting A-B-A block pattern of the obtained copolymers was clearly confirmed by atomic force microscopy studies as the respective blocks formed by the individual monomeric units could be distinguished by the pitches of the helical nanofibers. Moreover, detailed UV/vis and AFM studies have shown that by inverted two-component seed-induced polymerization, e.g., upon addition of seeds of MeO-PBI to the kinetically trapped aggregates of Cl-PBI, triblock supramolecular copolymers with B-A-B pattern can be generated. The switching of the block pattern could only be achieved because of the perfectly matching conditions for the copolymerization process and the tailored molecular geometry of the individual building blocks of both PBIs. These studies have demonstrated for the first time, that the block pattern of a supramolecular copolymer can be modulated by the experimental protocol through the approach of living supramolecular polymerization. Furthermore, by UV/vis analysis of the living copolymerization of MeO-PBI and MeS-PBI similar results were obtained showing also the formation of both A-B-A and B-A-B type supramolecular block copolymers. Although for these two PBIs the individual blocks could not be identified by AFM because the helical nanofibers of both PBIs exhibit identical helical pitches, these studies revealed for the first time that the approach of seeded living polymerization is not limited to a special pair of monomeric building blocks. In the last part of the thesis (Chapter 5) a systematic study on the two-component living copolymerization of PBIs with various sterical demanding bay-substituents is provided. Thus, a series of PBIs containing identical hydrogen-bonding amide groups in imide position but variable number (1-MeO-PBI, MeO-PBI, 1,6,7-MeO-PBI, 1,6,7,12-MeO-PBI) or size (EtO-PBI, iPrO-PBI) of alkoxy bay-substituents was investigated. The molecular geometry of the monomeric building blocks has a strong impact on the thermodynamically and even more pronounced on the kinetically controlled aggregation in solvent mixtures of MCH and Tol. While the mono- and dialkoxy-substituted PBIs form kinetically metastable species, the self-assembly of the tri- and tetramethoxy-substituted PBIs (1,6,7-MeO-PBI and 1,6,7,12-MeO-PBI) is completely thermodynamically controlled. The two 1,7-alkoxy substituted PBIs (EtO-PBI, iPrO-PBI) form very similar to MeO-PBI kinetically off-pathway H-aggregates and thermodynamically more favored J-type aggregates. However, the stability of the kinetically metastable state is drastically lower and the conversion into the thermodynamically favored state much faster than for MeO-PBI. In contrast, the monomethoxy-substituted PBI derivative (1-MeO-PBI) forms a kinetically trapped species by intramolecular hydrogen-bonding of the monomers, which can be transformed into the thermodynamically favored nanofibers by seeded polymerization. Importantly, the two-component seeded copolymerization of the kinetically trapped MeO PBI with seeds of other PBIs of the present series was studied by UV/vis and AFM revealing that the formation of supramolecular block copolymers is only possible for appropriate combinations of PBI building blocks. Thus, the seeded polymerization of the trapped state of the moderately core-twisted MeO-PBI with the, according to DFT-calculations, structurally similar PBIs (EtO-PBI and iPrO-PBI) leads to the formation of A-B-A block copolymers, like in the seeded copolymerization of MeO-PBItrapped with seeds of Cl-PBI and MeS-PBI already described in Chapter 4. However, by addition of seeds of the almost planar PBIs (H-PBI and 1-MeO-PBI) or seeds of the strongly core-twisted PBIs (1,6,7-MeO-PBI and 1,6,7,12-MeO-PBI) to the kinetically trapped state of MeO-PBI no block copolymers can be obtained. The mismatching geometry of these molecular building blocks strongly hampers both the intermolecular hydrogen-bonding and the π-π-interactions between the two different PBIs and consequently prevents the copolymerization process. Furthermore, the studies of the two-component seeded copolymerization of the kinetically trapped species of 1-MeO-PBI with seeds of the other PBIs also corroborated that a precise shape complementarity is crucial to generate supramolecular block copolymers. Thus, by addition of seeds of H-PBI to the kinetically trapped monomers of 1-MeO-PBI supramolecular block copolymers were generated. Both PBIs exhibit an almost planar PBI core according to DFT-calculations leading to strong non-covalent interactions between these PBIs. This perfectly matching geometry of both PBIs also enables the inverted seeded copolymerization of the kinetically trapped monomers of H-PBI with 1-MeO-PBIseed concomitant with a switching of the block pattern of the supramolecular copolymer from A-B-A to B-A-B type. In contrast, the seeding with the moderately twisted (MeO-PBI, EtO-PBI and iPrO-PBI) and the strongly twisted PBIs (1,6,7-MeO-PBI and 1,6,7,12 MeO-PBI) has no effect on the kinetically trapped state of 1-MeO-PBI, because the copolymerization of these PBIs is prevented by the mismatching geometry of the molecular building blocks. In conclusion, the supramolecular polymerization and two-component seeded copolymerization of a series of PBI monomers was investigated within this thesis. The studies revealed that the thermodynamically and kinetically controlled self-assembly can be strongly modified by subtle changes of the monomeric building blocks. Moreover, the results have shown that living supramolecular polymerization is an exceedingly powerful method to generate unprecedented supramolecular polymeric nanostructures with controlled block pattern and length distribution. The formation of supramolecular block copolymers can only be achieved under precise kinetic control of the polymerization process and is strongly governed by the shape complementarity already imparted in the individual components. Thus, these insightful studies might enable a more rational design of monomeric building blocks for the non-covalent synthesis of highly complex supramolecular architectures with interesting properties for possible future applications, e.g., as novel functional materials. N2 - Das Forschungsgebiet der supramolekularen Polymerisation hat sich in den letzten Jahrzehnten sehr rasch entwickelt, zumal da supramolekulare Polymere eine Fülle an Anwendungsmöglichkeiten in der organischen Elektronik, der Biologie oder als Funktionsmaterialen bieten (Kapitel 2.1). Während frühere Studien den Fokus auf die Untersuchung der Thermodynamik der supramolekularen Polymerisation gelegt haben (Kapitel 2.2), hat sich das akademische Interesse in jüngster Zeit dahingehend verschoben, Einblicke in kinetisch kontrollierte Selbstassemblierungsprozesse zu erhalten, um neuartige Strukturen mit faszinierenden Eigenschaften zu generieren (Kapitel 2.3). Im Zuge dieser Entwicklung wurde das Konzept der Saat-induzierten und der lebenden supramolekularen Polymerisation entwickelt, welche die Bildung von supramolekularen Polymeren mit geringer Polydispersität in kinetisch kontrollierten Prozessen ermöglichen (Kapitel 2.4). Des Weiteren wurden neue Strategien zu Erzeugung von Nanostrukturen entwickelt, die aus verschiedenen Komponenten aufgebaut sind und somit neue komplexe Strukturmotive zeigen. Eine Einteilung dieser supramolekularen Copolymere anhand einiger Literaturbeispiele und eine kurze Übersicht über die bisherigen Methoden, solche supramolekularen Strukturen zu erzeugen ist in Kapitel 2.5 dargestellt. Das Ziel der Doktorarbeit war die nicht-kovalente Synthese von erstrebenswerten supramolekularen Blockcopolymeren mittels lebender Saat-induzierter Polymerisation und zu erforschen, wie die molekulare Form der Monomerbausteine die supramolekulare Copolymerisation beeinflusst. Basierend auf der Molekülstruktur des zuvor untersuchten Perylenbisimidfarbstoffes H-PBI wurden in dieser Arbeit eine Reihe von neuen Perylenbisimiden mit identischen Amid-Seitengruppen in Imidposition und unterschiedlicher Art oder Anzahl von Buchtsubstituenten synthetisiert und charakterisiert. Die neuen Perylenbisimide wurden erfolgreich in drei Stufen durch neu entwickelte Syntheserouten erhalten, wobei von den jeweiligen Brom substituierten Perylen-3,4:9,10-tetracarbonsäuretetrabutylestern oder von N,N‘ Dicyclohexyl-1,7-dibromperylen-3,4:9,10-tetracarbonsäurebisimid ausgegangen wurde. Alle Zielverbindungen wurden im letzten Syntheseschritt mittels einer Imidisierungsreaktion der jeweiligen Perylenbisanhydridvorstufen mit N (2-Aminoethyl)-3,4,5-tris(dodecyloxy)benzamid erhalten und mittels 1H- und 13C NMR-Spektroskopie sowie mit hochauflösender Massenspektrometrie charakterisiert. Die Variation der Buchtsubstituenten hat einen starken Einfluss auf die optischen Eigenschaften der Perylenbisimidmonomere, was mittels UV/vis- und Fluoreszenzspektroskopie untersucht wurde. Die ansteigende Zahl der Methoxysubstituenten verursacht zum Beispiel eine Rotverschiebung der Absorptionsmaxima, welche mit einer Abnahme der Extinktionskoeffizienten einhergeht, und führt zu einem starken Anstieg der Fluoreszenzquantenausbeute. Außerdem wird auch die Molekülgeometrie der Perylenbisimide durch die Variation der Buchtsubstituenten beeinflusst. Mittels DFT-Rechnungen konnte gezeigt werden, dass eine Zunahme des sterischen Anspruchs der Buchtsubstituenten eine Vergrößerung des Torsionswinkels der Perylenbisimidkerne zur Folge hat. Als besonders geeignet für die im Rahmen dieser Arbeit anvisierten Studien erwies sich das mit zwei Methylgruppen in 1,7-Buchtposition substituierte MeO-PBI. Die Selbstassemblierung dieses 1,7-Dimethoxy-substituierten Perylenbisimid-Derivates wurde mit Hilfe von UV/vis-, Fluoreszenz- und FT-IR-Spektroskopie sowie mittels Rasterkraftmikroskopie detailliert analysiert (Kapitel 3). Diese Studien haben gezeigt, dass MeO-PBI in einem Lösungsmittelgemisch aus Methylcyclohexan und Toluol (2:1, v/v) in einem kinetisch kontrollierten Prozess durch schnelles Abkühlen der Monomerlösung von 90 auf 20 °C „off-pathway“ Nanopartikel ausbildet. Durch langsames Abkühlen der Monomerlösung entstehen hingegen fluoreszierende, J-aggregierte Nanofasern aufgrund von π-π-Wechselwirkungen und intermolekularen Wasserstoffbrückenbindungen. Die kinetisch metastabilen „off-pathway“ H-Aggregate können durch Zugabe einer polymeren J-Aggregat-Saat, welche durch eine Behandlung der polymeren Nanofasern mit Ultraschall gewonnen werden kann, in die thermodynamisch begünstigten J-Aggregate transformiert werden. Außerdem wurde der lebende Charakter dieser supramolekularen Saat-induzierten Polymerisation durch ein neu entworfenes multizyklisches Versuchsprotokoll nachgewiesen. Diese Experimente zur lebenden supramolekularen Polymerisation zeigen deutlich, dass der Polymerisationsprozess nur an den „aktiven“ Enden der polymeren Saat stattfinden kann und dass außerdem kaum Rekombinations- oder Kettenterminationsprozesse auftreten. Folglich ermöglicht die Methode der lebenden supramolekularen Polymerisation die Synthese von supramolekularen Polymeren mit kontrollierbarer Polymerlänge und geringer Polydispersität. In Kapitel 4 wird die Copolymerisation von MeO-PBI mit den strukturell ähnlichen 1,7 Dichlor- (Cl-PBI) und 1,7-Dimethylthiosubstituierten (MeS-PBI) Perylenbisimiden ausgeführt. Beide neuen Perylenbisimide bilden analog zu MeO-PBI „off-pathway“ Aggregate, die durch Saatzugabe in einem kinetisch kontrollierten Prozess in die thermodynamisch stabileren supramolekularen Polymere umgewandelt werden können. Die Stabilität der kinetisch gefangenen Aggregate von Cl-PBI und MeS-PBI ist jedoch verglichen mit den metastabilen Aggregaten von MeO-PBI deutlich geringer, da die π π Wechselwirkungen zwischen den molekularen Bausteinen aufgrund des vergrößerten Torsionswinkels der Peryleneinheiten stark reduziert sind. UV/vis-spektroskopische Studien zeigen, dass die Saat-induzierte Copolymerisation des kinetisch gefangenen Zustandes von MeO-PBI mit der Saat von Cl-PBI durch einen lebenden Kettenwachstumsprozess an den Polymerenden der Saat zur Ausbildung von neuartigen supramolekularen Blockcopolymeren mit A B A Blockstruktur führt. Die erzeugte A-B-A-Blockstruktur der erhaltenen Copolymere konnte eindeutig mittels Rasterkraftmikroskopie bestätigt werden, da die jeweiligen Polymerblöcke bestehend aus den einzelnen monomeren Einheiten anhand der Ganghöhe der helikalen Nanofasern unterschieden werden können. Ausführliche UV/vis- und Rasterkraftmikroskopiestudien haben außerdem demonstriert, dass, zum Beispiel durch Zugabe der Saat von MeO-PBI zu den kinetisch gefangenen Aggregaten von Cl PBI, Triblockcopolymere mit B-A-B-Blockstruktur in einer invertierten Saat-induzierten Zweikomponenten-Copolymerisation, erzeugt werden können. Dieser Wechsel der Blockstruktur kann nur durch perfekt abgestimmte Bedingungen für die Copolymerisation und bei übereinstimmender Molekülgeometrie der Monomereinheiten erreicht werden. Diese Studien zeigen erstmals, dass die Blockstruktur der supramolekularen Polymere durch das Versuchsprotokoll der lebenden supramolekularen Polymerisation variiert werden kann. Des Weiteren lieferten UV/vis-spektroskopische Untersuchungen der lebenden Copolymerisation von MeO-PBI und MeS-PBI ähnliche Ergebnisse, was darauf hindeutet, dass ebenfalls supramolekulare Blockcopolymere mit A-B-A- und B-A-B-Struktur gebildet werden können. Obwohl die einzelnen Polymerblöcke in diesem Fall wegen der identischen Helixganghöhe der Nanofasern nicht zugeordnet werden konnten, so zeigten diese Experimente doch, dass die Methode der Saat-induzierten lebenden Polymerisation nicht auf ein spezielles Paar von Monomerbausteinen limitiert ist. Im letzten Abschnitt der Doktorarbeit (Kapitel 5) wird eine systematische Studie der lebenden Zweikomponenten-Copolymerisation von Perylenbisimiden mit unterschiedlich sterisch anspruchsvollen Buchtsubstituenten dargestellt. Dementsprechend wurde eine Reihe von Perylenbisimiden mit identischen Amidseitenketten, aber unterschiedlicher Anzahl (1-MeO-PBI, MeO-PBI, 1,6,7-MeO-PBI, 1,6,7,12-MeO-PBI) oder Größe (EtO PBI, iPrO-PBI) der Alkoxybuchtsubstituenten untersucht. Die Molekülgeometrie der Monomereinheiten hat einen starken Einfluss auf das thermodynamisch und mehr noch auf das kinetisch kontrollierte Aggregationsverhalten in Lösungsmittelgemischen aus Methylcyclohexan und Toluol. Während die mono- und dialkoxysubstituierten Perylenbisimide kinetisch metastabile Zustände ausbilden, findet die Selbstassemblierung der tri- und tetramethoxysubstituierten Perylenbisimide (1,6,7-MeO-PBI, 1,6,7,12 MeO PBI) vollständig unter thermodynamischer Kontrolle statt. Die zwei 1,7 alkoxysubstituierten Perylenbisimide (EtO-PBI, iPrO-PBI) bilden analog zu MeO PBI sowohl kinetische „off-pathway“ H-Aggregate als auch thermodynamisch begünstigte J Aggregate. Verglichen mit MeO-PBI ist jedoch die Stabilität der kinetisch metastabilen Zustände von EtO-PBI und iPrO-PBI viel geringer und die Umwandlung in die thermodynamisch stabileren Aggregate geschieht daher viel schneller. Das monomethoxysubstituierte Perylenbisimid-Derivat (1 MeO PBI) bildet im Gegensatz dazu kinetisch gefangene Monomere durch intramolekulare Wasserstoffbrücken-bindungen, welche sich durch Saat-induzierte Polymerisation in die thermodynamisch begünstigteren Nanofasern transformieren lassen. Die Saat-induzierte Zweikomponenten-Copolymerisation des kinetisch gefangenen Zustands von MeO-PBI durch Saatzugabe der anderen Perylenbisimide der Reihe wurde mittels UV/vis-Spektroskopie und Rasterkraftmikroskopie analysiert. Diese Studien eröffneten, dass die Bildung von supramolekularen Blockcopolymeren nur für geometrisch passende Kombinationen der Perylenbisimide möglich ist. Dementsprechend führt die Saat-induzierte Polymerisation des kinetisch gefangenen Zustands von MeO-PBI mit den, laut DFT Rechnungen, strukturell ähnlichen Perylenbisimiden (EtO-PBI, iPrO-PBI) zur Bildung von A B A Blockcopolymeren, analog zu dem im Kapitel 4 beschriebenem Fall der Saat induzierten Copolymerisation mit Cl-PBI und MeS-PBI. Die Zugabe einer Saat der planaren Perylenbisimide (H-PBI, 1-MeO-PBI) oder der Perylenbisimide mit stark verdrehten Perylenkernen (1,6,7-MeO-PBI, 1,6,7,12 MeO PBI) zum kinetisch metastabilen Zustand von MeO-PBI führt dagegen nicht zur Bildung von Blockcopolymeren. Der Unterschied in der Molekülgeometrie dieser Monomerbausteine vermindert erheblich die Stärke der π π Wechselwirkungen zwischen den unterschiedlichen Perylenbisimiden und verhindert daher deren Copolymerisation. Die Studien zur Saat induzierten Zweikomponenten-Copolymerisation des kinetisch gefangenen Zustands von 1-MeO-PBI mit den anderen Perylenbisimiden der Serie bestätigte weiterhin, dass eine genaue Übereinstimmung der molekularen Geometrie entscheidend für die Erzeugung von supramolekularen Blockcopolymeren ist. Durch Zugabe der Saat von H-PBI zum kinetisch metastabilen Zustand von 1-MeO-PBI konnten folglich supramolekulare Blockcopolymere generiert werden. Mittels DFT-Rechnungen wurde gezeigt, dass beide Perylenbisimide einen relativ planaren Perylenkern aufweisen, was zu sehr starken, nicht-kovalenten Wechselwirkungen zwischen diesen beiden Monomerbausteinen führt. Die übereinstimmende Geometrie beider Perylenbisimide ermöglicht auch die invertierte Saat-induzierte Copolymerisation des kinetisch gefangenen Zustands von H-PBI mit 1-MeO-PBISaat, was mit einem Wechsel der Blockstruktur des supramolekularen Blockcopolymers von A B A zu B A B einhergeht. Die Zugabe der Saat der mäßig (EtO-PBI, iPrO PBI) und stark verdrehten Perylenbisimide (1,6,7-MeO-PBI, 1,6,7,12-MeO-PBI) hat im Gegensatz dazu keinen Effekt auf den kinetisch gefangenen Zustand von 1-MeO-PBI, da die Copolymerisation dieser Perylenbisimide durch die Nichtübereinstimmung der Molekülgeometrie der Monomerbausteine verhindert wird. Abschließend lässt sich zusammenfassen, dass in dieser Arbeit die supramolekulare Polymerisation und Saat-induzierte Zweikomponenten-Copolymerisation einer Reihe von Perylenbisimidmonomeren untersucht worden ist. Die Studien haben demonstriert, dass die thermodynamisch und kinetisch kontrollierten Selbstassemblierungsprozesse durch subtile Änderungen der Monomerbausteine stark variiert werden können. Außerdem zeigen die Ergebnisse, dass die lebende supramolekulare Polymerisation eine sehr leistungsfähige Methode zur Erzeugung von neuartigen supramolekularen, polymeren Nanostrukturen mit kontrollierter Blockstruktur und Längenverteilung darstellt. Die Bildung dieser supramolekularen Blockcopolymere kann nur unter präziser kinetischer Kontrolle erreicht werden und ist durch die Komplementarität der einzelnen molekularen Komponenten stark beeinflusst. Diese aufschlussreichen Studien bilden möglicherweise die Grundlage für ein rationaleres Design neuer Monomerbausteine zur nicht-kovalenten Synthese von hochkomplexen, supramolekularen Strukturen mit potentiell einzigartigen Eigenschaften für mögliche Anwendungen, beispielsweise als neuartige Funktionsmaterialien. KW - Supramolekulare Chemie KW - Perylenbisdicarboximide KW - Lebende Polymerisation KW - Aggregation KW - Supramolecular Block Copolymers KW - Perylenbisimides KW - Kinetic Self-assembly KW - Living Polymerisation KW - Organische Chemie Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-193004 ER - TY - THES A1 - Wagner, Martin T1 - Chronic Kidney Disease as an Important Co-morbid Condition in Coronary Heart Disease Patients T1 - Chronische Nierenerkrankung als bedeutender Risikofaktor bei Patienten mit koronarer Herzkrankheit N2 - In patients with coronary heart disease (CHD) the control of the modifiable “traditional” cardiovascular risk factors such as hypertension, dyslipidemia, diabetes, achieving/maintaining normal body weight and smoking cessation is of major importance to improve prognosis. Guideline recommendations for secondary CHD prevention include specific treatment targets for blood pressure, lipid levels, and markers of glucose metabolism for both younger and older patients. Chronic kidney disease (CKD) has been identified as a “non-traditional” risk factor for worse outcome in CHD patients, as it is associated with a markedly increased risk for subsequent CV events and mortality. The specific objectives of the current thesis-project are to investigate (a) the quality of care in a recent sample of German CHD patients and to investigate variation of risk factor control between younger and elder patients (≤70 versus >70 years), (b) to analyze the prevalence of CKD across Europe in stable CHD patients in the outpatient setting and during a hospital stay for CHD, (c) to investigate the level of awareness of CKD in German CHD patients and their treating physicians. Data from the European-wide EUROASPIRE IV study were used that include data on 7998 CHD patients in the ambulatory setting (study visit) and during a hospital stay for CHD (index). The German EUROASPIRE IV study center in Würzburg recruited 536 patients in 2012-2013. Risk factor control was compared against the current recommendations of the European Society of Cardiology. CKD was described by stages of glomerular filtration rate (eGFR) and albuminuria. German patients were asked in an additional kidney specific module whether they have ever been told by a physician about renal impairment. The fact that CKD or acute kidney injury (AKI) was mentioned in prominent parts of the hospital discharge letter as well as correct ICD-coding of CKD or AKI served as a proxy for physician’s awareness of CKD. The majority of German CHD patients was treated with the recommended drug therapies including e.g. β-blockers, anti-platelets and statins. However, treatment targets for blood pressure and LDL-cholesterol levels were not achieved in many patients (45% and 53%, respectively) and glycemic control in diabetic CHD patients with HbA1-levels <7% was insufficient (61%). A minority of patients reported on current smoking (10%), but unhealthy life-styles e.g. overweight/obesity (85%/37%) were frequent. Patterns of care differed between younger and older CHD patients while older patients were less likely to receive the recommended medical CHD-therapy, were more likely to have uncontrolled blood pressure and also to be diabetic. However, a greater proportion of diabetic patients >70 years was achieving the HbA1c target, and less elder patients were current smokers or were obese. About 17% of patients on average had CKD (eGFR< 60 ml/min/1.73m²) in the entire European sample at the study visit, and an additional 10% had albuminuria despite preserved eGFR, with considerable variation among countries. Impaired kidney function was observed in every fifth patient admitted for CHD in the entire European dataset of the EUROASPIRE IV study. Of the German CHD patients with CKD at the study visit, only a third were aware of their renal impairment. A minority of these patients was being seen by nephrologists, however, with a higher likelihood of CKD awareness and specialist care in more advanced stages of CKD. About a third of patients admitted for CHD showed either CKD or AKI during the hospital stay, but the discharge letter mentioned chronic or acute kidney disease only in every fifth of these patients. In contrast, correct ICD coding of CKD or AKI was more complete, but still suboptimal. In summary, quality of secondary prevention in German CHD patients indicates considerably room for improvement, with life-style modifications may become an even greater factor in prevention campaigns than medical treatment into certain target ranges. Preventive therapies should also consider different needs in older individuals acknowledging physical and mental potential, other comorbidities and drug-interactions with co-medication. CKD is common in CHD patients, not only in the elderly. Since CHD and CKD affect each other and impact on worse prognosis of each other, raising the awareness of CKD among patients and physicians and considering CKD in medical therapy may improve prognosis and slow disease progression of CHD as well as CKD. N2 - Bei Patienten mit koronarer Herzkrankheit (KHK) ist die Behandlung der „klassischen“ kardiovaskulären Risikofaktoren wie Bluthochdruck, Hypercholesterinämie, Diabetes, ein normales Körpergewicht sowie der Nikotinverzicht von Bedeutung, um die Prognose zu verbessern. Leitlinien empfehlen in der Sekundärprävention spezifische Behandlungsziele für Bluthochdruck, Hypercholesterinämie und Diabetes. Die chronische Niereninsuffizienz (NI) stellt einen „nicht-klassischen“ Risikofaktor für eine schlechtere Prognose bei KHK-Patienten dar und ist assoziiert mit einem erhöhten Risiko für eine Progression der KHK und kardiovaskuläre Mortalität. Die Studienziele der vorgelegten Arbeit beinhalten (a) die Umsetzung der KHK-Leitlinien in einem deutschen Kollektiv von Patienten inklusive der Unterschiede in der Versorgung zwischen Jüngeren und älteren Patienten (≤70 / >70 Jahre). Zudem (b) wird die Prävalenz der NI in stabilen ambulanten Verhältnissen und ebenso während eines Krankenhausaufenthaltes aufgrund eines KHK-Ereignisses in 24 Europäischen Ländern inklusive Deutschland untersucht. Schließlich (c) wird am deutschen Studienzentrum das Bewusstsein („Awareness“) für Nierenerkrankungen sowohl bei den Patienten als auch den behandelnden Ärzten analysiert. Es wurden die Daten der europaweiten EUROASPIRE IV Studie verwendet, für die zwischen 2012 und 2013 insgesamt 7998 KHK Patienten rekrutiert wurden. Sie enthält Informationen aus einem ambulanten Studienbesuch und aus einem Krankenhausaufenthalt aufgrund eines KHK-Ereignisses (Index). Am deutschen Studienzentrum in Würzburg wurden 536 Patienten eingeschlossen und die Qualität der Risikofaktorkontrolle nach den Empfehlungen der Europäischen Gesellschaft für Kardiologie untersucht. Chronische NI wurde in Stadien eingeteilt anhand von glomerulärer Filtrationsrate (eGFR) und Albuminurie. Zudem Am deutschen EUROASPIRE IV Studienzentrum wurden die Patienten zudem in einem zusätzlichen „Nieren-spezifischen Modul“ befragt, ob sie jemals von einem Arzt hinsichtlich einer Nierenerkrankung aufgeklärt wurden. Um das Bewusstsein für Nierenerkrankungen bei Ärzten einzuschätzen, wurde untersucht, ob akute oder chronische Nierenfunktionseinschränkungen im Arztbrief des Index-Aufenthaltes erwähnt wurden, und ob Nierenerkrankungen adäquat ICD-codiert waren. Die Mehrheit der deutschen KHK-Patienten wurde mit den empfohlenen Präparaten β-Blocker, Aspirin und Statinen behandelt, allerdings wurden die Ziel-/Grenzwerte für Blutdruck und Cholesterin oftmals nicht erreicht (45% bzw. 53%), ebenso wie die Blutzuckerkontrolle bei diabetischen Patienten (39%). Nur wenige Patienten waren aktive Raucher (10%), aber viele waren übergewichtig (85%) oder adipös (37%). Ältere Patienten erhielten seltener die empfohlenen Präparate und waren häufiger hypertensiv oder Diabetiker. Allerdings zeigten sich diabetische Patienten >70 Jahre besser kontrolliert und ältere Patienten waren seltener Raucher oder übergewichtig. Im Durchschnitt hatten 17% der KHK Patienten – mit großer Variation innerhalb der teilnehmenden Staaten – im EUROASPIRE IV Gesamtkollektiv eine chronische NI (eGFR <60 ml/min/1.73m²) und zusätzliche 10% hatten Albuminurie bei erhaltener eGFR. Eine eingeschränkte Nierenfunktion zeigte sich auch in jedem fünften Patienten bei Krankenhausaufnahme für das Index Ereignis im EUROASPIRE IV Gesamtkollektiv. Von den deutschen Patienten mit chronischer NI gab nur ein Drittel an, von ihrer Nierenfunktionseinschränkung zu wissen. Nur wenige dieser Patienten wurden von einem Nephrologen behandelt, wobei Patienten mit fortgeschrittener NI sich sowohl häufiger ihrer NI bewusst waren als auch von Spezialisten behandelt wurden. Im Index-Krankenhausaufenthalt hatte ein Drittel der Patienten wenigstens einen Hinweis auf eine entweder chronisch oder akut eingeschränkte Nierenfunktion. Lediglich in einem Fünftel war diese Diagnose im Entlassungsbrief erwähnt, während die Codierung nach Entlassung zwar vollständiger, aber immer noch lückenhaft war. Die Qualität der Sekundärprävention in deutschen KHK-Patienten lässt weiterhin beträchtlichen Raum für Verbesserung. Hierbei erscheinen die Veränderung im Lebensstil weitaus zielführender zu sein als die medikamentöse Therapie in definierte Zielbereiche. Die medizinische Therapie und die Herangehensweise an Verhaltensänderungen muss insbesondere bei älteren Patienten an die besondere Bedürfnisse dieser Patientengruppe angepasst werden. Chronische NI ist häufig bei KHK Patienten anzutreffen, nicht nur bei älteren Studienteilnehmern. KHK und chronische NI beeinflussen sich und die Prognose des jeweils anderen gegenseitig, sodass eine Steigerung des Bewusstseins für Nierenerkrankungen sowohl bei Patienten als auch bei Ärzten, und die Anpassung der Behandlungsstrategie womöglich zu einer Verbesserung der Prognose und zur Verlangsamung des Fortschreitens beider Erkrankungen, KHK und NI führen. KW - koronare Herzerkrankung KW - Sekundärprävention KW - Chronische Nierenerkrankung KW - coronary heart disease KW - secondary prevention KW - chronic kidney disease Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-175498 ER - TY - JOUR A1 - Wagner, Johanna A1 - Eiken, Barbara A1 - Haubitz, Imme A1 - Lichthardt, Sven A1 - Matthes, Niels A1 - Löb, Stefan A1 - Klein, Ingo A1 - Germer, Christoph-Thomas A1 - Wiegering, Armin T1 - Suprapubic bladder drainage and epidural catheters following abdominal surgery—a risk for urinary tract infections? JF - PLoS ONE N2 - Background Epidural catheters are state of the art for postoperative analgesic in abdominal surgery. Due to neurolysis it can lead to postoperative urinary tract retention (POUR), which leads to prolonged bladder catheterization, which has an increased risk for urinary tract infections (UTI). Our aim was to identify the current perioperative management of urinary catheters and, second, to identify the optimal time of suprapubic bladder catheter removal in regard to the removal of the epidural catheter. Methods We sent a questionnaire to 102 German hospitals and analyzed the 83 received answers to evaluate the current handling of bladder drainage and epidural catheters. Then, we conducted a retrospective study including 501 patients, who received an epidural and suprapubic catheter after abdominal surgery at the University Hospital Würzburg. We divided the patients into three groups according to the point in time of suprapubic bladder drainage removal in regard to the removal of the epidural catheter and analyzed the onset of a UTI. Results Our survey showed that in almost all hospitals (98.8%), patients received an epidural catheter and a bladder drainage after abdominal surgery. The point in time of urinary catheter removal was equally distributed between before, simultaneously and after the removal of the epidural catheter (respectively: ~28–29%). The retrospective study showed a catheter-associated UTI in 6.7%. Women were affected significantly more often than men (10,7% versus 2,5%, p<0.001). There was a non-significant trend to more UTIs when the suprapubic catheter was removed after the epidural catheter (before: 5.7%, after: 8.4%). Conclusion The point in time of suprapubic bladder drainage removal in relation to the removal of the epidural catheter does not seem to correlate with the rate of UTIs. The current handling in Germany is inhomogeneous, so further studies to standardize treatment are recommended. KW - catheters KW - epidural block KW - bladder KW - urinary tract infections KW - abdominal surgery KW - catheterization KW - surgical and invasive medical procedures KW - rectum Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-177731 VL - 14 IS - 1 ER - TY - JOUR A1 - Wagner, Fabienne A1 - Kunz, Tobias C. A1 - Chowdhury, Suvagata R. A1 - Thiede, Bernd A1 - Fraunholz, Martin A1 - Eger, Debora A1 - Kozjak-Pavlovic, Vera T1 - Armadillo repeat-containing protein 1 is a dual localization protein associated with mitochondrial intermembrane space bridging complex JF - PLoS ONE N2 - Cristae architecture is important for the function of mitochondria, the organelles that play the central role in many cellular processes. The mitochondrial contact site and cristae organizing system (MICOS) together with the sorting and assembly machinery (SAM) forms the mitochondrial intermembrane space bridging complex (MIB), a large protein complex present in mammalian mitochondria that partakes in the formation and maintenance of cristae. We report here a new subunit of the mammalian MICOS/MIB complex, an armadillo repeat-containing protein 1 (ArmC1). ArmC1 localizes both to cytosol and mitochondria, where it associates with the outer mitochondrial membrane through its carboxy-terminus. ArmC1 interacts with other constituents of the MICOS/MIB complex and its amounts are reduced upon MICOS/MIB complex depletion. Mitochondria lacking ArmC1 do not show defects in cristae structure, respiration or protein content, but appear fragmented and with reduced motility. ArmC1 represents therefore a peripheral MICOS/MIB component that appears to play a role in mitochondrial distribution in the cell. KW - Mitochondria KW - Outer membrane proteins KW - HeLa cells KW - Immunoprecipitation KW - Cytosol KW - Small interfering RNAs KW - Confocal microscopy KW - Cell stainin Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-202670 VL - 14 IS - 10 ER - TY - JOUR A1 - Voulgari‐Kokota, Anna A1 - Ankenbrand, Markus J. A1 - Grimmer, Gudrun A1 - Steffan‐Dewenter, Ingolf A1 - Keller, Alexander T1 - Linking pollen foraging of megachilid bees to their nest bacterial microbiota JF - Ecology and Evolution N2 - Solitary bees build their nests by modifying the interior of natural cavities, and they provision them with food by importing collected pollen. As a result, the microbiota of the solitary bee nests may be highly dependent on introduced materials. In order to investigate how the collected pollen is associated with the nest microbiota, we used metabarcoding of the ITS2 rDNA and the 16S rDNA to simultaneously characterize the pollen composition and the bacterial communities of 100 solitary bee nest chambers belonging to seven megachilid species. We found a weak correlation between bacterial and pollen alpha diversity and significant associations between the composition of pollen and that of the nest microbiota, contributing to the understanding of the link between foraging and bacteria acquisition for solitary bees. Since solitary bees cannot establish bacterial transmission routes through eusociality, this link could be essential for obtaining bacterial symbionts for this group of valuable pollinators. KW - foraging patterns KW - nest microbiota KW - plant–microbe–pollinator triangle KW - pollination network KW - solitary bees KW - wild bees Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-201749 SN - 00 VL - 2019 IS - 9 ER - TY - THES A1 - von Kistowski, Jóakim Gunnarsson T1 - Measuring, Rating, and Predicting the Energy Efficiency of Servers T1 - Messung, Bewertung und Vorhersage von Serverenergieeffizienz N2 - Energy efficiency of computing systems has become an increasingly important issue over the last decades. In 2015, data centers were responsible for 2% of the world's greenhouse gas emissions, which is roughly the same as the amount produced by air travel. In addition to these environmental concerns, power consumption of servers in data centers results in significant operating costs, which increase by at least 10% each year. To address this challenge, the U.S. EPA and other government agencies are considering the use of novel measurement methods in order to label the energy efficiency of servers. The energy efficiency and power consumption of a server is subject to a great number of factors, including, but not limited to, hardware, software stack, workload, and load level. This huge number of influencing factors makes measuring and rating of energy efficiency challenging. It also makes it difficult to find an energy-efficient server for a specific use-case. Among others, server provisioners, operators, and regulators would profit from information on the servers in question and on the factors that affect those servers' power consumption and efficiency. However, we see a lack of measurement methods and metrics for energy efficiency of the systems under consideration. Even assuming that a measurement methodology existed, making decisions based on its results would be challenging. Power prediction methods that make use of these results would aid in decision making. They would enable potential server customers to make better purchasing decisions and help operators predict the effects of potential reconfigurations. Existing energy efficiency benchmarks cannot fully address these challenges, as they only measure single applications at limited sets of load levels. In addition, existing efficiency metrics are not helpful in this context, as they are usually a variation of the simple performance per power ratio, which is only applicable to single workloads at a single load level. Existing data center efficiency metrics, on the other hand, express the efficiency of the data center space and power infrastructure, not focusing on the efficiency of the servers themselves. Power prediction methods for not-yet-available systems that could make use of the results provided by a comprehensive power rating methodology are also lacking. Existing power prediction models for hardware designers have a very fine level of granularity and detail that would not be useful for data center operators. This thesis presents a measurement and rating methodology for energy efficiency of servers and an energy efficiency metric to be applied to the results of this methodology. We also design workloads, load intensity and distribution models, and mechanisms that can be used for energy efficiency testing. Based on this, we present power prediction mechanisms and models that utilize our measurement methodology and its results for power prediction. Specifically, the six major contributions of this thesis are: We present a measurement methodology and metrics for energy efficiency rating of servers that use multiple, specifically chosen workloads at different load levels for a full system characterization. We evaluate the methodology and metric with regard to their reproducibility, fairness, and relevance. We investigate the power and performance variations of test results and show fairness of the metric through a mathematical proof and a correlation analysis on a set of 385 servers. We evaluate the metric's relevance by showing the relationships that can be established between metric results and third-party applications. We create models and extraction mechanisms for load profiles that vary over time, as well as load distribution mechanisms and policies. The models are designed to be used to define arbitrary dynamic load intensity profiles that can be leveraged for benchmarking purposes. The load distribution mechanisms place workloads on computing resources in a hierarchical manner. Our load intensity models can be extracted in less than 0.2 seconds and our resulting models feature a median modeling error of 12.7% on average. In addition, our new load distribution strategy can save up to 10.7% of power consumption on a single server node. We introduce an approach to create small-scale workloads that emulate the power consumption-relevant behavior of large-scale workloads by approximating their CPU performance counter profile, and we introduce TeaStore, a distributed, micro-service-based reference application. TeaStore can be used to evaluate power and performance model accuracy, elasticity of cloud auto-scalers, and the effectiveness of power saving mechanisms for distributed systems. We show that we are capable of emulating the power consumption behavior of realistic workloads with a mean deviation less than 10% and down to 0.2 watts (1%). We demonstrate the use of TeaStore in the context of performance model extraction and cloud auto-scaling also showing that it may generate workloads with different effects on the power consumption of the system under consideration. We present a method for automated selection of interpolation strategies for performance and power characterization. We also introduce a configuration approach for polynomial interpolation functions of varying degrees that improves prediction accuracy for system power consumption for a given system utilization. We show that, in comparison to regression, our automated interpolation method selection and configuration approach improves modeling accuracy by 43.6% if additional reference data is available and by 31.4% if it is not. We present an approach for explicit modeling of the impact a virtualized environment has on power consumption and a method to predict the power consumption of a software application. Both methods use results produced by our measurement methodology to predict the respective power consumption for servers that are otherwise not available to the person making the prediction. Our methods are able to predict power consumption reliably for multiple hypervisor configurations and for the target application workloads. Application workload power prediction features a mean average absolute percentage error of 9.5%. Finally, we propose an end-to-end modeling approach for predicting the power consumption of component placements at run-time. The model can also be used to predict the power consumption at load levels that have not yet been observed on the running system. We show that we can predict the power consumption of two different distributed web applications with a mean absolute percentage error of 2.2%. In addition, we can predict the power consumption of a system at a previously unobserved load level and component distribution with an error of 1.2%. The contributions of this thesis already show a significant impact in science and industry. The presented efficiency rating methodology, including its metric, have been adopted by the U.S. EPA in the latest version of the ENERGY STAR Computer Server program. They are also being considered by additional regulatory agencies, including the EU Commission and the China National Institute of Standardization. In addition, the methodology's implementation and the underlying methodology itself have already found use in several research publications. Regarding future work, we see a need for new workloads targeting specialized server hardware. At the moment, we are witnessing a shift in execution hardware to specialized machine learning chips, general purpose GPU computing, FPGAs being embedded into compute servers, etc. To ensure that our measurement methodology remains relevant, workloads covering these areas are required. Similarly, power prediction models must be extended to cover these new scenarios. N2 - In den vergangenen Jahrzehnten hat die Energieeffizienz von Computersystemen stark an Bedeutung gewonnen. Bereits 2015 waren Rechenzentren für 2% der weltweiten Treibhausgasemissionen verantwortlich, was mit der durch den Flugverkehr verursachten Treibhausgasmenge vergleichbar ist. Dabei wirkt sich der Stromverbrauch von Rechenzentren nicht nur auf die Umwelt aus, sondern verursacht auch erhebliche, jährlich um mindestens 10% steigende, Betriebskosten. Um sich diesen Herausforderungen zu stellen, erwägen die U.S. EPA und andere Behörden die Anwendung von neuartigen Messmethoden, um die Energieeffizienz von Servern zu bestimmen und zu zertifizieren. Die Energieeffizienz und der Stromverbrauch eines Servers wird von vielen verschiedenen Faktoren, u.a. der Hardware, der zugrundeliegenden Ausführungssoftware, der Arbeitslast und der Lastintensität, beeinflusst. Diese große Menge an Einflussfaktoren führt dazu, dass die Messung und Bewertung der Energieeffizienz herausfordernd ist, was die Auswahl von energieeffizienten Servern für konkrete Anwendungsfälle erheblich erschwert. Informationen über Server und ihre Energieeffizienz bzw. ihren Stromverbrauch beeinflussenden Faktoren wären für potentielle Kunden von Serverhardware, Serverbetreiber und Umweltbehörden von großem Nutzen. Im Allgemeinen mangelt es aber an Messmethoden und Metriken, welche die Energieeffizienz von Servern in befriedigendem Maße erfassen und bewerten können. Allerdings wäre es selbst unter der Annahme, dass es solche Messmethoden gäbe, dennoch schwierig Entscheidungen auf Basis ihrer Ergebnisse zu fällen. Um derartige Entscheidungen zu vereinfachen, wären Methoden zur Stromverbrauchsvorhersage hilfreich, um es potentiellen Serverkunden zu ermöglichen bessere Kaufentscheidungen zu treffen und Serverbetreibern zu helfen, die Auswirkungen möglicher Rekonfigurationen vorherzusagen. Existierende Energieeffizienzbenchmarks können diesen Herausforderungen nicht vollständig begegnen, da sie nur einzelne Anwendungen bei wenigen Lastintensitätsstufen ausmessen. Auch sind die vorhandenen Energieeffizienzmetriken in diesem Kontext nicht hilfreich, da sie normalerweise nur eine Variation des einfachen Verhältnisses von Performanz zu Stromverbrauch darstellen, welches nur auf einzelne Arbeitslasten bei einer einzigen gemessenen Lastintensität angewandt werden kann. Im Gegensatz dazu beschreiben die existierenden Rechenzentrumseffizienzmetriken lediglich die Platz- und Strominfrastruktureffizienz von Rechenzentren und bewerten nicht die Effizienz der Server als solche. Methoden zur Stromverbrauchsvorhersage noch nicht für Kunden verfügbarer Server, welche die Ergebnisse einer ausführlichen Stromverbrauchsmessungs- und Bewertungsmethodologie verwenden, gibt es ebenfalls nicht. Stattdessen existieren Stromverbrauchsvorhersagemethoden und Modelle für Hardwaredesigner und Hersteller. Diese Methoden sind jedoch sehr feingranular und erfordern Details, welche für Rechenzentrumsbetreiber nicht verfügbar sind, sodass diese keine Vorhersage durchführen können. In dieser Arbeit werden eine Energieeffizienzmess- und Bewertungsmethodologie für Server und Energieeffizienzmetriken für diese Methodologie vorgestellt. Es werden Arbeitslasten, Lastintensitäten und Lastverteilungsmodelle und -mechanismen, die für Energieeffizienzmessungen und Tests verwendet werden können, entworfen. Darauf aufbauend werden Mechanismen und Modelle zur Stromverbrauchsvorhersage präsentiert, welche diese Messmethodologie und die damit produzierten Ergebnisse verwenden. Die sechs Hauptbeiträge dieser Arbeit sind: Eine Messmethodologie und Metriken zur Energieeffizienzbewertung von Servern, die mehrere, verschiedene Arbeitslasten unter verschiedenen Lastintensitäten ausführt, um die beobachteten Systeme vollständig zu charakterisieren. Diese Methodologie wird im Bezug auf ihre Wiederholbarkeit, Fairness und Relevanz evaluiert. Es werden die Stromverbrauchs- und Performanzvariationen von wiederholten Methodologieausführungen untersucht und die Fairness der Methodologie wird durch mathematische Beweise und durch eine Korrelationsanalyse anhand von Messungen auf 385 Servern bewertet. Die Relevanz der Methodologie und der Metrik wird gezeigt, indem Beziehungen zwischen Metrikergebnissen und der Energieeffizienz von anderen Serverapplikationen untersucht werden. Modelle und Extraktionsverfahren für sich mit der Zeit verändernde Lastprofile, sowie Lastverteilungsmechanismen und -regeln. Die Modelle können dazu verwendet werden, beliebige Lastintensitätsprofile, die zum Benchmarking verwendet werden können, zu entwerfen. Die Lastverteilungsmechanismen, hingegen, platzieren Arbeitslasten in hierarchischer Weise auf Rechenressourcen. Die Lastintensitätsmodelle können in weniger als 0,2 Sekunden extrahiert werden, wobei die jeweils resultierenden Modelle einen durchschnittlichen Medianmodellierungsfehler von 12,7% aufweisen. Zusätzlich dazu kann die neue Lastverteilungsstrategie auf einzelnen Servern zu Stromverbrauchseinsparungen von bis zu 10,7% führen. Ein Ansatz um kleine Arbeitslasten zu erzeugen, welche das Stromverbrauchsverhalten von größeren, komplexeren Lasten emulieren, indem sie ihre CPU Performance Counter-Profile approximieren sowie den TeaStore: Eine verteilte, auf dem Micro-Service-Paradigma basierende Referenzapplikation. Der TeaStore kann verwendet werden, um Strom- und Performanzmodellgenauigkeit, Elastizität von Cloud Autoscalern und die Effektivität von Stromsparmechanismen in verteilten Systemen zu untersuchen. Das Arbeitslasterstellungsverfahren kann das Stromverbrauchsverhalten von realistischen Lasten mit einer mittleren Abweichung von weniger als 10% und bis zu einem minimalen Fehler von 0,2 Watt (1%) nachahmen. Die Anwendung des TeaStores wird durch die Extraktion von Performanzmodellen, die Anwendung in einer automatisch skalierenden Cloudumgebung und durch eine Demonstration der verschiedenen möglichen Stromverbräuche, die er auf Servern verursachen kann, gezeigt. Eine Methode zur automatisierten Auswahl von Interpolationsstrategien im Bezug auf Performanz und Stromverbrauchscharakterisierung. Diese Methode wird durch einen Konfigurationsansatz, der die Genauigkeit der auslastungsabhängigen Stromvorhersagen von polynomiellen Interpolationsfunktionen verbessert, erweitert. Im Gegensatz zur Regression kann der automatisierte Interpolationsmethodenauswahl- und Konfigurationsansatz die Modellierungsgenauigkeit mit Hilfe eines Referenzdatensatzes um 43,6% verbessern und kann selbst ohne diesen Referenzdatensatz eine Verbesserung von 31,4% erreichen. Einen Ansatz, der explizit den Einfluss von Virtualisierungsumgebungen auf den Stromverbrauch modelliert und eine Methode zur Vorhersage des Stromverbrauches von Softwareapplikationen. Beide Verfahren nutzen die von der in dieser Arbeit vorgegestellten Stromverbrauchsmessmethologie erzeugten Ergebnisse, um den jeweiligen Stromverbrauch von Servern, die den Vorhersagenden sonst nicht zur Verfügung stehen, zu ermöglichen. Die vorgestellten Verfahren können den Stromverbrauch für verschiedene Hypervisorkonfigurationen und für Applikationslasten zuverlässig vorhersagen. Die Vorhersage des Stromverbrauchs von Serverapplikationen erreicht einen mittleren absoluten Prozentfehler von 9,5%. Ein Modellierungsansatz zur Stromverbrauchsvorhersage für Laufzeitplatzierungsentscheidungen von Softwarekomponenten, welcher auch dazu verwendet werden kann den Stromverbrauch für bisher nicht beobachtete Lastintensitäten auf dem laufenden System vorherzusagen. Der Modellierungsansatz kann den Stromverbrauch von zwei verschiedenen, verteilten Webanwendungen mit einem mittleren absoluten Prozentfehler von 2,2% vorhersagen. Zusätzlich kann er den Stromverbrauch von einem System bei einer in der Vergangenheit nicht beobachteten Lastintensität und Komponentenverteilung mit einem Fehler von 1,2% vorhersagen. Die Beiträge in dieser Arbeit haben sich bereits signifikant auf Wissenschaft und Industrie ausgewirkt. Die präsentierte Energieeffizienzbewertungsmethodologie, inklusive ihrer Metriken, ist von der U.S. EPA in die neueste Version des ENERGY STAR Computer Server-Programms aufgenommen worden und wird zurzeit außerdem von weiteren Behörden, darunter die EU Kommission und die Nationale Chinesische Standardisierungsbehörde, in Erwägung gezogen. Zusätzlich haben die Implementierung der Methodologie und die zugrundeliegende Methodologie bereits Anwendung in mehreren wissenschaftlichen Arbeiten gefunden. In Zukunft werden im Rahmen von weiterführenden Arbeiten neue Arbeitslasten erstellt werden müssen, um die Energieeffizienz von spezialisierter Hardware zu untersuchen. Zurzeit verändert sich die Server-Rechenlandschaft in der Hinsicht, dass spezialisierte Ausführungseinheiten, wie Chips zum maschinellen Lernen, GPGPU Rechenchips und FPGAs in Servern verbaut werden. Um sicherzustellen, dass die Messmethodologie aus dieser Arbeit weiterhin relevant bleibt, wird es nötig sein, Arbeitslasten zu erstellen, welche diese Fälle abdecken, sowie Stromverbrauchsmodelle zu entwerfen, die in der Lage sind, derartige spezialisierte Hardware zu betrachten. KW - Benchmarking KW - Elektrizitätsverbrauch KW - Server KW - Energy Efficiency KW - Metrics KW - Energieeffizienz Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-178478 ER - TY - JOUR A1 - von Collenberg, Cora R. A1 - Schmitt, Dominique A1 - Rülicke, Thomas A1 - Sendtner, Michael A1 - Blum, Robert A1 - Buchner, Erich T1 - An essential role of the mouse synapse-associated protein Syap1 in circuits for spontaneous motor activity and rotarod balance JF - Biology Open N2 - Synapse-associated protein 1 (Syap1) is the mammalian homologue of synapse-associated protein of 47 kDa (Sap47) in Drosophila. Genetic deletion of Sap47 leads to deficiencies in short-term plasticity and associative memory processing in flies. In mice, Syap1 is prominently expressed in the nervous system, but its function is still unclear. We have generated Syap1 knockout mice and tested motor behaviour and memory. These mice are viable and fertile but display distinct deficiencies in motor behaviour. Locomotor activity specifically appears to be reduced in early phases when voluntary movement is initiated. On the rotarod, a more demanding motor test involving control by sensory feedback, Syap1-deficient mice dramatically fail to adapt to accelerated speed or to a change in rotation direction. Syap1 is highly expressed in cerebellar Purkinje cells and cerebellar nuclei. Thus, this distinct motor phenotype could be due to a so-far unknown function of Syap1 in cerebellar sensorimotor control. The observed motor defects are highly specific since other tests in the modified SHIRPA exam, as well as cognitive tasks like novel object recognition, Pavlovian fear conditioning, anxiety-like behaviour in open field dark-light transition and elevated plus maze do not appear to be affected in Syap1 knockout mice. KW - Syap1 knockout KW - Motor behaviour KW - Associative learning KW - Fear conditioning KW - Object recognition Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-201986 N1 - PDF includes: Correction: An essential role of the mouse synapse-associated protein Syap1 in circuits for spontaneous motor activity and rotarod balance - February 15, 2020. Biology Open (2020) 9, bio048942. doi:10.1242/bio.048942 VL - 8 ER - TY - JOUR A1 - Vogel, Patrick A1 - Markert, Jonathan A1 - Rückert, Martin A. A1 - Herz, Stefan A1 - Keßler, Benedikt A1 - Dremel, Kilian A1 - Althoff, Daniel A1 - Weber, Matthias A1 - Buzug, Thorsten M. A1 - Bley, Thorsten A. A1 - Kullmann, Walter H. A1 - Hanke, Randolf A1 - Zabler, Simon A1 - Behr, Volker C. T1 - Magnetic Particle Imaging meets computed tomography: first simultaneous imaging JF - Scientific Reports N2 - Magnetic Particle Imaging (MPI) is a promising new tomographic modality for fast as well as three-dimensional visualization of magnetic material. For anatomical or structural information an additional imaging modality such as computed tomography (CT) is required. In this paper, the first hybrid MPI-CT scanner for multimodal imaging providing simultaneous data acquisition is presented. KW - Applied physics KW - Biomedical engineering KW - Imaging techniques Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-202501 VL - 9 ER - TY - JOUR A1 - Villalobos, Alvaro S. A1 - Wiese, Jutta A1 - Imhoff, Johannes F. A1 - Dorador, Cristina A1 - Keller, Alexander A1 - Hentschel, Ute T1 - Systematic affiliation and genome analysis of Subtercola vilae DB165T with particular emphasis on cold adaptation of an isolate from a high-altitude cold volcano lake JF - Microorganisms N2 - Among the Microbacteriaceae the species of Subtercola and Agreia form closely associated clusters. Phylogenetic analysis demonstrated three major phylogenetic branches of these species. One of these branches contains the two psychrophilic species Subtercola frigoramans and Subtercola vilae, together with a larger number of isolates from various cold environments. Genomic evidence supports the separation of Agreia and Subtercola species. In order to gain insight into the ability of S. vilae to adapt to life in this extreme environment, we analyzed the genome with a particular focus on properties related to possible adaptation to a cold environment. General properties of the genome are presented, including carbon and energy metabolism, as well as secondary metabolite production. The repertoire of genes in the genome of S. vilae DB165\(^T\) linked to adaptations to the harsh conditions found in Llullaillaco Volcano Lake includes several mechanisms to transcribe proteins under low temperatures, such as a high number of tRNAs and cold shock proteins. In addition, S. vilae DB165\(^T\) is capable of producing a number of proteins to cope with oxidative stress, which is of particular relevance at low temperature environments, in which reactive oxygen species are more abundant. Most important, it obtains capacities to produce cryo-protectants, and to combat against ice crystal formation, it produces ice-binding proteins. Two new ice-binding proteins were identified which are unique to S. vilae DB165\(^T\). These results indicate that S. vilae has the capacity to employ different mechanisms to live under the extreme and cold conditions prevalent in Llullaillaco Volcano Lake. KW - cold adaptation KW - Subtercola vilae KW - genome analysis KW - systematic affiliation KW - Llullaillaco Volcano Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-197394 SN - 2076-2607 VL - 7 IS - 4 ER - TY - JOUR A1 - Vey, Johannes A1 - Kapsner, Lorenz A. A1 - Fuchs, Maximilian A1 - Unberath, Philipp A1 - Veronesi, Giulia A1 - Kunz, Meik T1 - A toolbox for functional analysis and the systematic identification of diagnostic and prognostic gene expression signatures combining meta-analysis and machine learning JF - Cancers N2 - The identification of biomarker signatures is important for cancer diagnosis and prognosis. However, the detection of clinical reliable signatures is influenced by limited data availability, which may restrict statistical power. Moreover, methods for integration of large sample cohorts and signature identification are limited. We present a step-by-step computational protocol for functional gene expression analysis and the identification of diagnostic and prognostic signatures by combining meta-analysis with machine learning and survival analysis. The novelty of the toolbox lies in its all-in-one functionality, generic design, and modularity. It is exemplified for lung cancer, including a comprehensive evaluation using different validation strategies. However, the protocol is not restricted to specific disease types and can therefore be used by a broad community. The accompanying R package vignette runs in ~1 h and describes the workflow in detail for use by researchers with limited bioinformatics training. KW - bioinformatics tool KW - R package KW - machine learning KW - meta-analysis KW - biomarker signature KW - gene expression analysis KW - survival analysis KW - functional analysis Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-193240 SN - 2072-6694 VL - 11 IS - 10 ER - TY - JOUR A1 - Vadokas, Georg A1 - Koehler, Stefan A1 - Weiland, Judith A1 - Lilla, Nadine A1 - Stetter, Christian A1 - Westermaier, Thomas T1 - Early antiinflammatory therapy attenuates brain damage after SAH in rats JF - Translational Neuroscience N2 - Background Early inflammatory processes may play an important role in the development of early brain injury (EBI) after subarachnoid hemorrhage (SAH). Experimental studies suggest that anti-inflammatory and membrane-stabilizing drugs might have beneficial effects, although the underlying mechanisms are not fully understood. The aim of this study was to investigate the effect of early treatment with methylprednisolone and minocycline on cerebral perfusion and EBI after experimental SAH. Methods Male Sprague-Dawley rats were subjected to SAH using the endovascular filament model. 30 minutes after SAH, they were randomly assigned to receive an intravenous injection of methylprednisolone (16mg/kg body weight, n=10), minocycline (45mg/kg body weight, n=10) or saline (n=11). Mean arterial blood pressure (MABP), intracranial pressure (ICP) and local cerebral blood flow (LCBF) over both hemispheres were recorded continuously for three hours following SAH. Neurological assessment was performed after 24 hours. Hippocampal damage was analyzed by immunohistochemical staining (caspase 3). Results Treatment with methylprednisolone or minocycline did not result in a significant improvement of MABP, ICP or LCBF. Animals of both treatment groups showed a non-significant trend to better neurological recovery compared to animals of the control group. Mortality was reduced and hippocampal damage significantly attenuated in both methylprednisolone and minocycline treated animals. Conclusion The results of this study suggest that inflammatory processes may play an important role in the pathophysiology of EBI after SAH. Early treatment with the anti-inflammatory drugs methylprednisolone or minocycline in the acute phase of SAH has the potential to reduce brain damage and exert a neuroprotective effect. KW - subarachnoid hemorrhage KW - early brain injury KW - methylprednisolone KW - minocycline KW - neuroprotection Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-201440 VL - 10 IS - 1 ER - TY - THES A1 - Uri, Anna T1 - Differential requirement for CD28 co-stimulation on donor T cell subsets in mouse models of acute graft versus host disease and graft versus tumour effect T1 - Unterschiedlicher Einfluss der CD28 Kostimulation auf Donor-T Zell-Populationen in Mausmodellen der akuten Graft-versus-Host Disease und des Graft-versus-Tumor Effekts N2 - Hematopoietic stem cell transplantation is a curative therapy for malignant diseases of the haematopoietic system. The patients first undergo chemotherapy or irradiation therapy which depletes the majority of tumour cells before they receive the transplant, consisting of haematopoietic stem cells and mature T cells from a healthy donor. The donor T cells kill malignant cells that have not been eliminated by the conditioning therapy (graft versus leukaemia effect, GvL), and, therefore, are crucially required to prevent relapse of the tumour. However, the donor T cells may also severely damage the patient’s organs causing acute graft versus host disease (aGvHD). In mice, aGvHD can be prevented by interfering with the co-stimulatory CD28 signal on donor T cells. However, experimental models using conventional CD28 knockout mice as T cell donors or αCD28 antibodies have some disadvantages, i.e. impaired T cell development in the thymus of CD28 knockout mice and systemic CD28 blockade with αCD28 antibodies. Thus, it remains unclear how CD28 co-stimulation on different donor T cell subsets contributes to the GvL effect and aGvHD, respectively. We developed mouse models of aGvHD and the GvL effect that allowed to selectively delete CD28 on certain donor T cell populations or on all donor T cells. CD4+ conventional T cells (Tconv cells), regulatory T cells (Treg cells) or CD8+ T cells were isolated from either Tamoxifen-inducible CD28 knockout (iCD28KO) mice or their wild type (wt) littermates. Allogeneic recipient mice were then transplanted with T cell depleted bone marrow cells and different combinations of iCD28KO and wt T cell subsets. Tamoxifen treatment of the recipients caused irreversible CD28 deletion on the iCD28KO donor T cell population. In order to study the GvL response, BCL-1 tumour cells were injected into the mice shortly before transfer of the T cells. CD4+ Tconv mediated aGvHD was efficiently inhibited when wt Treg cells were co-transplanted. In contrast, after selective CD28 deletion on donor Treg cells, the mice developed a late and lethal flare of aGvHD, i.e. late-onset aGvHD. This was associated with a decline in iCD28KO Treg cell numbers around day 20 after transplantation. CD28 ablation on either donor CD4+ Tconv cells or CD8+ T cells reduced but did not abrogate aGvHD. Moreover, iCD28KO and wt CD8+ T cells were equally capable of killing allogeneic target cells in vivo and in vitro. Due to this sufficient anti-tumour activity of iCD28KO CD8+ T cells, they had a therapeutic effect in our GvL model and 25% of the mice survived until the end of the experiment (day 120) without any sign of the malignant disease. Similarly, CD28 deletion on all donor T cells induced long-term survival. This was not the case when all donor T cells were isolated from wt donor mice. In contrast to the beneficial outcome after CD28 deletion on all donor T cells or only CD8+ T cells, selective CD28 deletion on donor CD4+ Tconv cells completely abrogated the GvL effect due to insufficient CD4+ T cell help from iCD28KO CD4+ Tconv cells. This study demonstrates that therapeutic inhibition of the co-stimulatory CD28 signal in either all donor T cells or only in CD8+ T cells might protect patients from aGvHD without increasing the risk of relapse of the underlying disease. Moreover, deletion of CD28 on donor Treg cells constitutes a mouse model of late-onset aGvHD which can be a useful tool in aGvHD research. N2 - Die hämatopoetische Stammzelltransplantation ist eine heilende Therapie für maligne Erkrankungen des blutbildenden Systems. Die Patienten müssen sich zuerst einer Chemotherapie oder einer Strahlentherapie unterziehen, welche den Großteil der Tumorzellen beseitigt, bevor sie das Transplantat erhalten. Dieses besteht aus hämatopoetischen Stammzellen und reifen T-Zellen eines gesunden Spenders. Die transplantierten T-Zellen töten die malignen Zellen, die zuvor durch die Chemo- bzw. Strahlentherapie nicht zerstört wurden (Graft versus Leukämie Effekt, GvL), und sind daher essenziell, um ein Rezidiv der Tumorerkrankung zu verhindern. Die T-Zellen des Spenders können aber auch die Organe des Patienten schwer schädigen und dadurch die akute Graft versus Host Disease (aGvHD) verursachen. In Mäusen kann die aGvHD verhindert werden, indem man das kostimulatorische Signal des CD28 Moleküls moduliert. Mausmodelle, in denen konventionelle CD28 Knock-out Mäuse als T-Zell-Donoren verwendet werden oder αCD28 Antikörper eingesetzt werden, haben einige Nachteile, wie zum Beispiel eine gestörte T-Zell Entwicklung in CD28 Knock-out Mäusen oder die systemische Blockade des CD28 Moleküls mit Antikörpern. Dadurch blieb bislang unklar, inwiefern CD28-Kostimulation auf verschiedenen T-Zell-Populationen zum GvL Effekt und zur aGvHD beiträgt. Wir haben Mausmodelle der aGvHD und des GvL Effekts entwickelt, die ermöglichen, das CD28 Molekül entweder nur auf bestimmten Spender-T-Zell-Populationen oder auf allen Spender-T-Zellen zu deletieren. Hierfür wurden CD4+ konventionelle T-Zellen (Tconv Zellen), regulatorische T Zellen (Treg Zellen) und CD8+ T-Zellen von Tamoxifen-induzierbaren CD28 Knockout (iCD28KO) Mäusen bzw. deren wildtypischen (wt) Wurfgeschwistern isoliert. Den allogenen Empfängermäusen wurden dann T-Zell-depletierte Knochenmarkszellen und verschiedene Kombinationen aus iCD28KO und wt Spender-T-Zellen transplantiert. Die Behandlung der Empfängertiere mit Tamoxifen führte zu einer irreversiblen Deletion von CD28 auf den iCD28KO T-Zell-Populationen. Um den GvL Effekt zu untersuchen, wurden den Mäusen kurz vor dem T-Zell-Transfer BCL-1 Tumorzellen injiziert. Die von den CD4+ Tconv Zellen verursachte aGvHD konnte sehr gut kontrolliert werden, indem zusätzlich wt Treg Zellen transplantiert wurden. Im Gegensatz dazu entwickelten die Mäuse einen späten und tödlichen Schub der aGvHD, auch late-onset aGvHD genannt, wenn die CD28 Expression auf den Treg Zellen des Spenders deletiert wurde. Dies ging mit einem Rückgang der iCD28KO Treg-Zellzahlen ca. 20 Tage nach Transplantation einher. Die Deletion von CD28 auf CD4+ Tconv Zellen oder auf CD8+ T-Zellen reduzierte die aGvHD, konnte diese aber nicht vollständig verhindern. Des Weiteren waren iCD28KO und wildtypische CD8+ T-Zellen gleichermaßen in der Lage, allogene Zellen zu töten, in vivo wie auch in vitro. Aufgrund dieser hinreichenden Anti-Tumor-Antwort hatten iCD28KO CD8+ T-Zellen einen therapeutischen Effekt in unserem GvL Modell und 25 % der Tiere überlebte bis zum Versuchsende (Tag 120) ohne Anzeichen des Tumors. Ein Langzeitüberleben der Tiere wurde auch beobachtet, wenn das CD28 Molekül auf allen Spender-T-Zellen fehlte. Dies war nicht der Fall, wenn alle Spender-T-Zellen von wt Mäusen isoliert wurden. Im Gegensatz zur CD28 Deletion auf entweder allen Spender-T-Zellen oder nur auf den CD8+ T-Zellen, ging der GvL Effekt vollständig verloren, wenn CD28 nur auf den CD4+ Tconv Zellen entfernt wurde, da diese dann keine ausreichende T-Zellhilfe mehr leisten konnten. Die vorliegende Arbeit zeigt, dass eine therapeutische Blockade des kostimulatorischen CD28 Signals entweder in allen Spender T-Zellen oder nur in CD8+ T-Zellen vor der aGvHD schützen könnte ohne gleichzeitig das Risiko eines Rezidivs zu erhöhen. Darüber hinaus steht mit der Deletion von CD28 auf Treg Zellen ein Mausmodell der late-onset aGvHD zur Verfügung, welches für die weitere Erforschung dieser Krankheit nützlich sein kann. KW - Antigen CD28 KW - Transplantat-Wirt-Reaktion KW - Maus KW - Graft versus host disease KW - GvHD Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-165863 ER - TY - JOUR A1 - Ullmann, Tobias A1 - Sauerbrey, Julia A1 - Hoffmeister, Dirk A1 - May, Simon Matthias A1 - Baumhauer, Roland A1 - Bubenzer, Olaf T1 - Assessing Spatiotemporal Variations of Sentinel-1 InSAR Coherence at Different Time Scales over the Atacama Desert (Chile) between 2015 and 2018 JF - Remote Sensing N2 - This study investigates synthetic aperture radar (SAR) time series of the Sentinel-1 mission acquired over the Atacama Desert, Chile, between March 2015 and December 2018. The contribution analyzes temporal and spatial variations of Sentinel-1 interferometric SAR (InSAR) coherence and exemplarily illustrates factors that are responsible for observed signal differences. The analyses are based on long temporal baselines (365–1090 days) and temporally dense time series constructed with short temporal baselines (12–24 days). Results are compared to multispectral data of Sentinel-2, morphometric features of the digital elevation model (DEM) TanDEM-X WorldDEM™, and to a detailed governmental geographic information system (GIS) dataset of the local hydrography. Sentinel-1 datasets are suited for generating extensive, nearly seamless InSAR coherence mosaics covering the entire Atacama Desert (>450 × 1100 km) at a spatial resolution of 20 × 20 meter per pixel. Temporal baselines over several years lead only to very minor decorrelation, indicating a very high signal stability of C-Band in this region, especially in the hyperarid uplands between the Coastal Cordillera and the Central Depression. Signal decorrelation was associated with certain types of surface cover (e.g., water or aeolian deposits) or with actual surface dynamics (e.g., anthropogenic disturbance (mining) or fluvial activity and overland flow). Strong rainfall events and fluvial activity in the periods 2015 to 2016 and 2017 to 2018 caused spatial patterns with significant signal decorrelation; observed linear coherence anomalies matched the reference channel network and indicated actual episodic and sporadic discharge events. In the period 2015–2016, area-wide loss of coherence appeared as strip-like patterns of more than 80 km length that matched the prevailing wind direction. These anomalies, and others observed in that period and in the period 2017–2018, were interpreted to be caused by overland flow of high magnitude, as their spatial location matched well with documented heavy rainfall events that showed cumulative precipitation amounts of more than 20 mm. KW - Chile KW - Atacama KW - Sentinel-1 KW - InSAR KW - coherence KW - geomorphology Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-193836 SN - 2072-4292 VL - 11 IS - 24 ER - TY - JOUR A1 - Uereyen, Soner A1 - Kuenzer, Claudia T1 - A review of earth observation-based analyses for major river basins JF - Remote Sensing N2 - Regardless of political boundaries, river basins are a functional unit of the Earth’s land surface and provide an abundance of resources for the environment and humans. They supply livelihoods supported by the typical characteristics of large river basins, such as the provision of freshwater, irrigation water, and transport opportunities. At the same time, they are impacted i.e., by human-induced environmental changes, boundary conflicts, and upstream–downstream inequalities. In the framework of water resource management, monitoring of river basins is therefore of high importance, in particular for researchers, stake-holders and decision-makers. However, land surface and surface water properties of many major river basins remain largely unmonitored at basin scale. Several inventories exist, yet consistent spatial databases describing the status of major river basins at global scale are lacking. Here, Earth observation (EO) is a potential source of spatial information providing large-scale data on the status of land surface properties. This review provides a comprehensive overview of existing research articles analyzing major river basins primarily using EO. Furthermore, this review proposes to exploit EO data together with relevant open global-scale geodata to establish a database and to enable consistent spatial analyses and evaluate past and current states of major river basins. KW - major river basins KW - catchment KW - watershed KW - Earth observation KW - remote sensing KW - spatial analyses KW - land surface KW - surface water Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-193849 SN - 2072-4292 VL - 11 IS - 24 ER - TY - THES A1 - Turakhiya, Ankit T1 - Functional characterization of the role of ZFAND1 in stress granule turnover T1 - Funktionelle Charakterisierung der Rolle von ZFAND1 im Umsatz von Stressgranula N2 - Protein quality control systems are critical for cellular proteostasis and survival under stress conditions. The ubiquitin proteasome system (UPS) plays a pivotal role in proteostasis by eliminating misfolded and damaged proteins. However, exposure to the environmental toxin arsenite results in the accumulation of polyubiquitylated proteins, indicating an overload of the UPS. Arsenite stress induces the rapid formation of stress granules (SGs), which are cytoplasmic assemblies of mRNPs stalled in translation initiation. The mammalian proteins ZFAND2A/B (also known as AIRAP and AIRAPL, respectively) bind to the 26S proteasome, and ZFAND2A has been shown to adapt proteasome activity to arsenite stress. They belong to a small subfamily of AN1 type zinc finger containing proteins that also comprises the unexplored mammalian member ZFAND1 and its yeast homolog Cuz1. In this thesis, the cellular function of Cuz1 and ZFAND1 was investigated. Cuz1/ZFAND1 was found to interact with the ubiquitin-selective, chaperone-like ATPase Cdc48/p97 and with the 26S proteasome. The interaction between Cuz1/ZFAND1 and Cdc48/p97 requires a predicted ubiquitin-like domain of Cuz1/ZFAND1. In vivo, this interaction was strongly dependent on acute arsenite stress, suggesting that it is a part of the cellular arsenite stress response. Lack of Cuz1/ZFAND1 caused a defect in the clearance of arsenite induced SG clearance. ZFAND1 recruits both, the 26S proteasome and p97, to arsenite-induced SGs for their normal clearance. In the absence of ZFAND1, SGs lack the 26S proteasome and p97, accumulate defective ribosomal products and become aberrant. These aberrant SGs persist after arsenite removal and undergo degradation via autophagy. ZFAND1 depletion is epistatic to the expression of pathogenic mutant p97 with respect to SG clearance, suggesting that ZFAND1 function is relevant to the multisystem degenerative disorder, inclusion body myopathy associated with Paget’s disease of bone and frontotemporal dementia and amyotrophic lateral sclerosis (IBMPFD/ALS). N2 - Systeme zur Sicherung der Proteinqualität sind von essentieller Bedeutung für die zelluläre Proteostase und das Überleben unter Stressbedingungen. Dabei spielt das Ubiquitin-Proteasom-System (UPS) eine entscheidende Rolle: Es beseitigt fehlgefaltete und beschädigte Proteine. Sind Zellen dem Umweltgift Arsenit ausgesetzt, kommt es zu einer Akkumulation von polyubiquitinierten Proteinen, was auf eine Überlastung des UPS hinweist. Dieser durch Arsenit verursachte Stress bewirkt eine schnelle Bildung von Stressgranula (SGs), einer cytoplasmatischen Ansammlung von mRNPs, die in der Initiation der Translation blockiert sind. Die Säuger Proteine ZFAND2A/B (auch bekannt als AIRAP und AIRAPL) binden an das 26S Proteasom. Zusätzlich wurde gezeigt, dass ZFAND2A die Aktivität des Proteasoms an durch Arsenit verursachten Stress, anpasst. Diese Proteine gehören zu einer kleinen Unterfamilie von Zinkfinger von AN1-type enthaltenden Proteinen, zu der auch das bislang nicht erforschte Säuge Protein ZFAND1 und sein Hefehomolog Cuz1 gehören. In dieser Arbeit wurde die zelluläre Funktion von Cuz1 und ZFAND1 untersucht. Es zeigte sich, dass Cuz1/ZFAND1 mit dem 26S Proteasom und der Ubiquitin-selektiven, Chaperon-ähnlichen ATPase Cdc48/p97 interagiert. Die Interaktion zwischen Cuz1/ZFAND1 und Cdc48/p97 benötigt eine vorhergesagte Ubiquitin-ähnliche Domäne von Cuz1/ZFAND1. Diese Interaktion ist in vivo stark von akutem Arsenitstress abhängig, was darauf hindeutet, dass sie Teil der zellulären Stressantwort gegen Arsenit ist. Fehlt Cuz1/ZFAND1, so kommt es zu einer Störung bei der Beseitigung der von Arsenit verursachten SGs. Normalerweise rekrutiert ZFAND1 sowohl das 26S Proteasom als auch p97 zu diesen SGs, um sie zu entfernen. Wenn ZFAND1 jedoch fehlt, sind auch p97 und das 26S Proteasom nicht an den SGs lokalisiert. Dadurch sammeln sich dort defekte ribosomale Produkte an, und die SGs werden abnormal. Auch nach Entfernung des Arsenitstresses bestehen diese abnormalen SGs fort und werden schließlich über Autophagie abgebaut. Bei der Beseitigung der SGs ist das Fehlen von ZFAND1 epistatisch zu der Expression einer pathogenen p97-Mutante, was darauf hinweirt, dass ZFAND1 bei der degenerativen Multisystemerkrankung Einschlusskörper-Myopathie assoziiert mit Pagets Erkrankung der Knochen und frontotemporaler Demenz und Amyotrophe Lateralsklerose (IBMPFD/ALS) eine Rolle spielt. KW - ubiquitin KW - ZFAND1 Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-163751 ER - TY - JOUR A1 - Tshitenge Tshitenge, Dieudonné A1 - Bruhn, Torsten A1 - Feineis, Doris A1 - Mudogo, Virima A1 - Kaiser, Marcel A1 - Brun, Reto A1 - Bringmann, Gerhard T1 - An unusually broad series of seven cyclombandakamines, bridged dimeric naphthylisoquinoline alkaloids from the Congolese liana Ancistrocladus ealaensis JF - Scientific Reports N2 - A series of seven unusual dimeric naphthylisoquinoline alkaloids was isolated from the leaves of the tropical liana Ancistrocladus ealaensis J. Léonard, named cyclombandakamine A (1), 1-epi-cyclombandakamine A (2), and cyclombandakamines A3–7 (3–7). These alkaloids have a chemically thrilling structural array consisting of a twisted dihydrofuran-cyclohexenone-isochromene system. The 1′″-epimer of 4, cyclombandakamine A1 (8), had previously been discovered in an unidentified Ancistrocladus species related to A. ealaensis. Both lianas produce the potential parent precursor, mbandakamine A (9), but only A. ealaensis synthesizes the corresponding cyclized form, along with a broad series of slightly modified analogs. The challenging isolation required, besides multi-dimensional chromatography, the use of a pentafluorophenyl stationary phase. Featuring up to six stereocenters and two types of chiral axes, their structures were elucidated by means of 1D and 2D NMR, HRESIMS, in combination with oxidative chemical degradation experiments as well as chiroptical (electronic circular dichroism spectroscopy) and quantum chemical calculations. Compared to the ‘open-chain’ parent compound 9, these dimers displayed rather moderate antiplasmodial activities. KW - Screening KW - Solution-state NMR KW - Stereochemistry KW - Structure elucidation Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-200759 VL - 9 ER - TY - THES A1 - Tshitenge Tshitenge, Dieudonné T1 - Isolation and Structural Elucidation of Novel Anti-Infective Naphthylisoquinoline Alkaloids from Ancistrocladus ealaensis, and Phytochemical Analysis of Two Congolese Medicinal Plants T1 - Isolierung und Strukturaufklärung von neuen anti-infektiven Naphthylisochinolin-Alkaloiden aus Ancistrocladus ealaensis und phytochemische Analyse von zwei kongolesischen Heilpflanzen N2 - Herein described are the isolation, structural elucidation, and biological evaluation of highly thrilling monomeric and dimeric new naphthylisoquinoline alkaloids from A. ealaensis. The separation, chiral resolution, and characterization of a series of stereoisomeric 2,3-dihydrobenzofuran neolignans are also reported. The analytical and phytochemical analysis on two Congolese antimalarial herbal drugs is part of the last chapter of the results. In this last case, major concerns on widely used Congolese herbal drugs are discussed. N2 - Im Rahmen dieser Dissertation werden Einblicke in die strukturelle Vielfalt und das therapeutische Potenzial von pflanzlichen Sekundärmetaboliten gewährt KW - Isolation KW - Structural elucidation KW - Alkaloid KW - Naphthylisoquinoline KW - Anti-infective KW - Naphthylisochinolinalkaloide KW - Ancistrocladaceae KW - Kongo Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-154175 ER - TY - THES A1 - Tscharn, Robert T1 - Innovative And Age-Inclusive Interaction Design with Image-Schematic Metaphors T1 - Innovatives und Alters-Inklusives Interaktionsdesign mit Image-Schematischen Metaphern N2 - The field of human-computer interaction (HCI) strives for innovative user interfaces. Innovative and novel user interfaces are a challenge for a growing population of older users and endanger older adults to be excluded from an increasingly digital world. This is because older adults often have lower cognitive abilities and little prior experiences with technology. This thesis aims at resolving the tension between innovation and age-inclusiveness by developing user interfaces that can be used regardless of cognitive abilities and technology-dependent prior knowledge. The method of image-schematic metaphors holds promises for innovative and age-inclusive interaction design. Image-schematic metaphors represent a form of technology-independent prior knowledge. They reveal basic mental models and can be gathered in language (e.g. bank account is container from "I put money into my bank account"). Based on a discussion of previous applications of image-schematic metaphors in HCI, the present work derives three empirical research questions regarding image-schematic metaphors for innovative and age-inclusive interaction design. The first research question addresses the yet untested assumption that younger and older adults overlap in their technology-independent prior knowledge and, therefore, their usage of image-schematic metaphors. In study 1, a total of 41 participants described abstract concepts from the domains of online banking and everyday life. In study 2, ten contextual interviews were conducted. In both studies, younger and older adults showed a substantial overlap of 70% to 75%, indicating that also their mental models overlap substantially. The second research question addresses the applicability and potential of image-schematic metaphors for innovative design from the perspective of designers. In study 3, 18 student design teams completed an ideation process with either an affinity diagram as the industry standard, image-schematic metaphors or both methods in combination and created paper prototypes. The image-schematic metaphor method alone, but not the combination of both methods, was readily adopted and applied just as a well as the more familiar standard method. In study 4, professional interaction designers created prototypes either with or without image-schematic metaphors. In both studies, the method of image-schematic metaphors was perceived as applicable and creativity stimulating. The third research question addresses whether designs that explicitly follow image-schematic metaphors are more innovative and age-inclusive regarding differences in cognitive abilities and prior technological knowledge. In two experimental studies (study 5 and 6) involving a total of 54 younger and 53 older adults, prototypes that were designed with image-schematic metaphors were perceived as more innovative compared to those who were designed without image-schematic metaphors. Moreover, the impact of prior technological knowledge on interaction was reduced for prototypes that had been designed with image-schematic metaphors. However, participants' cognitive abilities and age still influenced the interaction significantly. The present work provides empirical as well as methodological findings that can help to promote the method of image-schematic metaphors in interaction design. As a result of these studies it can be concluded that the image-schematic metaphors are an applicable and effective method for innovative user interfaces that can be used regardless of prior technological knowledge. N2 - Innovative Benutzungsoberflächen sind eines der Hauptziele der Mensch-Computer Interaktion. Diese neuartigen Benutzungsoberflächen sind eine Herausforderung gerade für ältere Benutzer und drohen diese aus der immer digitaleren Welt auszuschließen. Hierbei spielen abnehmende kognitive Fähigkeiten und eine geringere Vorerfahrung mit Technologie eine wichtige Rolle. Diese Arbeit zielt darauf ab, die Spannung zwischen Innovation und Alters-Inklusivität zu verringern und Benutzungsoberflächen zu entwickeln, die unabhängig von kognitiven Fähigkeiten und technologieabhängigem Vorwissen benutzt werden können. Die Methode der image-schematischen Metaphern verspricht innovative und zugleich alters-inklusives Interaktionsdesign. Image-schematische Metaphern stellen eine technologieunabhängige Form von Vorwissen dar. Sie offenbaren grundlegende mentale Modelle und können aus metaphorischer Sprache extrahiert werden (z.B. Bankkonto ist Container ausgehend von "Geld ein}zahlen). Die vorliegende Arbeit leitet aus vorangegangen Anwendung von image-schematischen Metaphern im Bereich der Mensch-Computer Interaktion drei empirische Forschungsfragen mit dem Fokus auf innovatives und alters-inklusives Interaktionsdesign ab. Die erste Forschungsfrage behandelt die bisher ungetestete Annahme, dass junge und ältere Menschen in ihrem technologieunabhängigem Vorwissen und damit auch im Gebrauch image-schematischer Metaphern übereinstimmen. In Studie 1 beschrieben 41 Probanden abstrakte Konzepte in den Bereichen Online Banking und Alltag. In Studie 2 wurden zehn kontextuelle Interviews durchgeführt. In beiden Studien wurde eine Übereinstimmung zwischen 70% und 75% gefunden, was auf eine substantielle Übereinstimmung der mentalen Modelle hinweist. Die zweite Forschungsfrage zielte auf die Anwendbarkeit und das Potential image-schematischer Metaphern für innovatives Design aus der Perspektive von Designern ab. In Studie 3 durchliefen 18 studentische Designteams einen Ideenfindungsprozess mit Prototypenerstellung, der entweder auf einem Affinity Diagramm als Industriestandard, image-schematischen Metaphern oder beiden Ansätzen in Kombination basierte. Die Methode der image-schematischen Metaphern, aber nicht die Kombination beider Methoden, war ebenso leicht anwendbar wie die bekanntere Standardmethode. In Studie 4 erstellten professionelle Interaktionsdesigner Prototypen mit oder ohne image-schematische Metaphern. In beiden Studien wurde die neue Methode als leicht anwendbar und die Kreativität stimulierend wahrgenommen. Die dritte Forschungsfrage ging der Frage nach, ob Prototypen, die explizit auf image-schematischen Metaphern basieren, tatsächlich innovativer wahrgenommen werden und alters-inklusiver bezüglich kognitiver Fähigkeiten und Technologievorwissen sind. In zwei experimentellen Studien (Studie 5 und 6) mit insgesamt 54 jüngeren und 53 älteren Menschen wurden Prototypen, die mit image-schematischen Metaphern entwickelt worden waren, als innovativer wahrgenommen als solche, die nicht explizit mit der neuen Methode entwickelt worden waren. Zudem war der Einfluss von Technologievorwissen auf die Interaktion geringer für Prototypen, die mit image-schematischen Metaphern erstellt worden waren. Der Einfluss von kognitiven Fähigkeiten und Alter auf die Interaktion blieb jedoch signifikant. Die vorliegende Arbeit liefert sowohl in empirischer als auch methodischer Hinsicht einen Beitrag zur Weiterentwicklung der Methode der image-schematischen Metaphern im Interaktionsdesign. Als Ergebnis dieser Arbeit lässt sich festhalten, dass image-schematische Metaphern eine leicht anwendbare und effektive Methode darstellen, um innovative Benutzungsoberflächen zu entwickeln, die unabhängig von Technologievorwissen benutzt werden können. KW - Mensch-Maschine-Kommunikation KW - Innovation KW - Human-Computer Interaction KW - Innovation KW - Experimental Studies KW - Interaction Design KW - Methodology KW - Benutzeroberfläche Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-175762 ER - TY - JOUR A1 - Trappe, Julian A1 - Kneisel, Christof T1 - Geophysical and sedimentological investigations of Peatlands for the assessment of lithology and subsurface water pathways JF - Geosciences N2 - Peatlands located on slopes (herein called slope bogs) are typical landscape units in the Hunsrueck, a low mountain range in Southwestern Germany. The pathways of the water feeding the slope bogs have not yet been documented and analyzed. The identification of the different mechanisms allowing these peatlands to originate and survive requires a better understanding of the subsurface lithology and hydrogeology. Hence, we applied a multi-method approach to two case study sites in order to characterize the subsurface lithology and to image the variable spatio-temporal hydrological conditions. The combination of Electrical Resistivity Tomography (ERT) and an ERT-Monitoring and Ground Penetrating Radar (GPR), in conjunction with direct methods and data (borehole drilling and meteorological data), allowed us to gain deeper insights into the subsurface characteristics and dynamics of the peatlands and their catchment area. The precipitation influences the hydrology of the peatlands as well as the interflow in the subsurface. Especially, the geoelectrical monitoring data, in combination with the precipitation and temperature data, indicate that there are several forces driving the hydrology and hydrogeology of the peatlands. While the water content of the uppermost layers changes with the weather conditions, the bottom layer seems to be more stable and changes to a lesser extent. At the selected case study sites, small differences in subsurface properties can have a huge impact on the subsurface hydrogeology and the water paths. Based on the collected data, conceptual models have been deduced for the two case study sites. KW - peatland KW - slope bogs KW - geomorphology KW - subsurface hydrology KW - electrical resistivity tomography KW - ground penetrating radar KW - boreholes KW - Hunsrueck Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-201699 VL - 9 IS - 3 ER - TY - THES A1 - Trabel, Mirko T1 - Growth and Characterization of Epitaxial Manganese Silicide Thin Films T1 - Wachstum und Charakterisierung dünner epitaktischer MnSi Schichten N2 - This thesis describes the growth and characterization of epitaxial MnSi thin films on Si substrates. The interest in this material system stems from the rich magnetic phase diagram resulting from the noncentrosymmetric B20 crystal structure. Here neighboring spins prefer a tilted relative arrangement in contrast to ferro- and antiferromagnets, which leads to a helical ground state where crystal and spin helix chirality are linked [IEM+85]. This link makes the characterization and control of the crystal chirality the main goal of this thesis. After a brief description of the material properties and applied methods, the thesis itself is divided into four main parts. In the first part the advancement of the MBE growth process of MnSi on Si\((111)\) substrate as well as the fundamental structural characterization are described. Here the improvement of the substrate interface by an adjusted substrate preparation process is demonstrated, which is the basis for well ordered flat MnSi layers. On this foundation the influence of Mn/Si flux ratio and substrate temperature on the MnSi layer growth is investigated via XRD and clear boundaries to identify the optimal growth conditions are determined. The nonstoichiometric phases outside of this optimal growth window are identified as HMS and Mn\(_5\)Si\(_3\). Additionally, a regime at high substrate temperatures and low Mn flux is discovered, where MnSi islands are growing incorporated in a Si layer, which could be interesting for further investigations as a size confinement can change the magnetic phase diagram [DBS+18]. XRD measurements demonstrate the homogeneity of the grown MnSi layers over most of the 3 inch wafer diameter and a small \(\omega\)-FWHM of about 0.02° demonstrates the high quality of the layers. XRD and TEM measurements also show that relaxation of the layers happens via misfit dislocations at the interface to the substrate. The second part of the thesis is concerned with the crystal chirality. Here azimuthal \(\phi\)-scans of asymmetric XRD reflections reveal twin domains with a \(\pm\)30° rotation to the substrate. These twin domains seem to consist of left and right-handed MnSi, which are connected by a mirror operation at the \((\bar{1}10)\) plane. For some of the asymmetric XRD reflections this results in different intensities for the different twin domains, which reveals that one of the domains is rotated +30° and the other is rotated -30°. From XRD and TEM measurements an equal volume fraction of both domains is deduced. Different mechanisms to suppress these twin domains are investigated and successfully achieved with the growth on chiral Si surfaces, namely Si\((321)\) and Si\((531)\). Azimuthal \(\phi\)-scans of asymmetric XRD reflections demonstrate a suppression of up to 92%. The successful twin suppression is an important step in the use of MnSi for the proposed spintronics applications with skyrmions as information carriers, as discussed in the introduction. Because of this achievement, the third part of the thesis on the magnetic properties of the MnSi thin films is not only concerned with the principal behavior, but also with the difference between twinned and twin suppressed layers. Magnetometry measurements are used to demonstrate, that the MnSi layers behave principally as expected from the literature. The analysis of saturation and residual magnetization hints to the twin suppression on Si\((321)\) and Si\((531)\) substrates and further investigations with more samples can complete this picture. For comparable layers on Si\((111)\), Si\((321)\) and Si\((531)\) the Curie-Weiss temperature is identical within 1 K and the critical field within 0.1 T. Temperature dependent magnetoresistivity measurements also demonstrate the expected \(T^2\) behavior not only on Si\((111)\) but also on Si\((321)\) substrates. This demonstrates the successful growth of MnSi on Si\((321)\) and Si\((531)\) substrates. The latter measurements also reveal a residual resistivity of less then half for MnSi on Si\((321)\) in comparison to Si\((111)\). This can be explained with the reduced number of domain boundaries demonstrating the successful suppression of one of the twin domains. The homogeneity of the residual resistivity as well as the charge carrier density over a wide area of the Si\((111)\) wafer is also demonstrated with these measurements as well as Hall effect measurements. The fourth part shows the AMR and PHE of MnSi depending on the angle between in plane current and magnetic field direction with respect to the crystal direction. This was proposed as a tool to identify skyrmions [YKT+15]. The influence of the higher C\(_{3\mathrm{v}}\) symmetry of the twinned system instead of the C\(_3\) symmetry of a B20 single crystal is demonstrated. The difference could serve as a useful additional tool to prove the twin suppression on the chiral substrates. But this is only possible for rotations with specific symmetry surfaces and not for the studied unsymmetrical Si\((321)\) surface. Measurements for MnSi layers on Si\((111)\) above the critical magnetic field demonstrate the attenuation of AMR and PHE parameters for increasing resistivity, as expected from literature [WC67]. Even if a direct comparison to the parameters on Si\((321)\) is not possible, the higher values of the parameters on Si\((321)\) can be explained considering the reduced charge carrier scattering from domain boundaries. Below the critical magnetic field, which would be the region where a skyrmion lattice could be expected, magnetic hysteresis complicates the analysis. Only one phase transition at the critical magnetic field can be clearly observed, which leaves the existence of a skyrmion lattice in thin epitaxial MnSi layers open. The best method to solve this question seems to be a more direct approach in the form of Lorentz-TEM, which was also successfully used to visualize the skyrmion lattice for thin plates of bulk MnSi [TYY+12]. For the detection of in plane skyrmions, lamellas would have to be prepared for a side view, which seems in principle possible. The demonstrated successful twin suppression for MnSi on Si\((321)\) and Si\((531)\) substrates may also be applied to other material systems. Suppressing the twinning in FeGe on Si\((111)\) would lead to a single chirality skyrmion lattice near room temperature [HC12]. This could bring the application of skyrmions as information carriers in spintronics within reach. Glossary: MBE Molecular Beam Epitaxy XRD X-Ray Diffraction HMS Higher Manganese Silicide FWHM Full Width Half Maximum TEM Tunneling Electron Microscopy AMR Anisotropic MagnetoResistance PHE Planar Hall Effect Bibliography: [IEM+85] M. Ishida, Y. Endoh, S. Mitsuda, Y. Ishikawa, and M. Tanaka. Crystal Chirality and Helicity of the Helical Spin Density Wave in MnSi. II. Polarized Neutron Diffraction. Journal of the Physical Society of Japan, 54(8):2975, 1985. [DBS+18] B. Das, B. Balasubramanian, R. Skomski, P. Mukherjee, S. R. Valloppilly, G. C. Hadjipanayis, and D. J. Sellmyer. Effect of size confinement on skyrmionic properties of MnSi nanomagnets. Nanoscale, 10(20):9504, 2018. [YKT+15] T. Yokouchi, N. Kanazawa, A. Tsukazaki, Y. Kozuka, A. Kikkawa, Y. Taguchi, M. Kawasaki, M. Ichikawa, F. Kagawa, and Y. Tokura. Formation of In-plane Skyrmions in Epitaxial MnSi Thin Films as Revealed by Planar Hall Effect. Journal of the Physical Society of Japan, 84(10):104708, 2015. [WC67] R. H. Walden and R. F. Cotellessa. Magnetoresistance of Nickel-Copper Single-Crystal Thin Films. Journal of Applied Physics, 38(3):1335, 1967. [TYY+12] A. Tonomura, X. Yu, K. Yanagisawa, T. Matsuda, Y. Onose, N. Kanazawa, H. S. Park, and Y. Tokura. Real-Space Observation of Skyrmion Lattice in Helimagnet MnSi Thin Samples. Nano Letters, 12(3):1673, 2012. [HC12] S. X. Huang and C. L. Chien. Extended Skyrmion Phase in Epitaxial FeGe(111) Thin Films. Physical Review Letters, 108(26):267201, 2012. N2 - Diese Arbeit befasst sich mit dem Wachstum und der Charakterisierung dünner epitaktischer MnSi Schichten auf Si Substraten. Das Interesse an diesem Materialsystem liegt insbesondere im reichhaltigen magnetischen Phasendiagramm begründet, welches aus der nicht zentrosymmetrischen B20 Kristallstruktur des MnSi resultiert. Im Gegensatz zu Ferro- oder Antiferromagneten bevorzugen benachbarte Spins sich unter einem Winkel zueinander auszurichten, was zu einem helikalen Grundzustand führt in dem die Händigkeit von Kristallstruktur und Spin-Helix aneinander gekoppelt sind [IEM+85]. Diese Kopplung macht die Charakterisierung und Kontrolle der Händigkeit der Kristallstruktur zum Hauptziel dieser Arbeit. Nach einer kurzen Beschreibung der Materialeigenschaften und der angewendeten Methoden ist die Arbeit selbst in vier Hauptteile aufgeteilt. Im ersten Teil ist sowohl die Verbesserung des Molekularstrahlepitaxie-Wachstumsprozesses von MnSi auf Si\((111)\) Substrat, als auch die grundlegende strukturelle Charakterisierung beschrieben. Hierbei ist die Verbesserung der Substratgrenzfläche mit Hilfe eines angepassten Vorbereitungsprozesses erläutert, welche die Basis für glatte, geordnete dünne MnSi Schichten bildet. Auf dieser Basis ist der Einfluss des Mn/Si Fluss-Verhältnisses sowie der Substrattemperatur mittels Röntgenbeugung dargestellt und ein optimales Wachstumsfenster identifiziert. Die nicht stöchiometrischen Phasen außerhalb dieses Wachstumsfensters sind MnSi\(_{1.75-x}\) (HMS) sowie Mn\(_5\)Si\(_3\). Zusätzlich tritt bei hohen Substrattemperaturen und niedrigem Mn Fluss eine Phase auf, in der MnSi Inseln, eingebettet in eine Si Schicht, wachsen. Diese könnten von weiterführendem Interesse sein, da die Größenbeschränkung das magnetische Phasendiagramm beeinflussen kann [DBS+18]. Röntgenbeugungsmessungen zeigen die Homogenität der gewachsenen MnSi Schichten über einen Großteil des 3\ Zoll Wafer Durchmessers sowie die hohe Qualität mittels einer kleinen \(\omega\)-Halbwertsbreite von ungefähr 0.02°. Röntgenbeugungs- und Transmissionselektronenmikroskopiemessungen zeigen außerdem, dass die MnSi Dünnschichten mittels Fehlversetzungen an der Grenzfläche zwischen Dünnschicht und Substrat relaxieren. Der zweite Teil befasst sich mit der Händigkeit der Kristallstruktur. Azimutale \(\phi\)-Messungen asymmetrischer Röntgenbeugungsreflexe zeigen Kristallzwillingsdomänen welche \(\pm\)30° zum Substrat rotiert sind. Die Kristallzwillingsdomänen lassen sich vermutlich als rechts- und links-händiges MnSi identifizieren, welche durch eine Spiegelung an der \((\bar{1}10)\) Ebene verbunden sind. Anhand der unterschiedlichen Intensität mancher Reflexe für unterschiedliche Händigkeit wird außerdem gezeigt, dass eine der Domänen um +30° und die andere Domäne um -30° rotiert ist. Mithilfe der Röntgenbeugung und Transmissionselektronenmikroskopie wird außerdem der gleiche Volumenanteil der Kristallzwillinge demonstriert. Verschieden Mechanismen zur Unterdrückung dieser Kristallzwillingsdomänen werden untersucht und die erfolgreiche Unterdrückung gelang mit Hilfe des Wachstums auf chiralen Si Substraten, nämlich Si\((321)\) und Si\((531)\) Substraten. Hier ist mit azimutalen \(\phi\)-Messungen der asymmetrischen Röntgenbeugungsreflexen eine Unterdrückung von bis zu 92% demonstriert. Die erfolgreiche Unterdrückung der Kristallzwillingsdomänen ist ein wichtiger Schritt zur vorgeschlagenen Nutzung von MnSi in Spintronik-Anwendungen, wie in der Einleitung erläutert. Aufgrund dessen befasst sich der dritte Teil nicht nur mit den magnetischen Eigenschaften der dünnen MnSi Schichten, sondern auch damit, wie die Unterschiede für Schichten mit Kristallzwillingsdomänen und mit deren Unterdrückung sind. Im ersten Abschnitt ist anhand von Magnetometriemessungen gezeigt, dass sich die MnSi Dünnschichten prinzipiell so verhalten, wie es aus der Literatur zu erwarten ist. Das Verhalten von Sättigungs- und Restmagnetisierung deutet auf die Unterdrückung der Kristallzwillingsdomänen auf Si\((321)\) und Si\((531)\) Substraten hin, wobei das Gesamtbild mittels einer erweiterten Probenserie vervollständigt werden kann. Für vergleichbare MnSi Dünnschichten auf Si\((111)\), Si\((321)\) und Si\((531)\) ist die Curie-Weiss Temperatur innerhalb von 1 K und das kritische Magnetfeld innerhalb von 0.1 T identisch. Die Temperaturabhängigkeit des Magnetowiderstands zeigt das zu erwartende \(T^2\) Verhalten nicht nur auf Si\((111)\), sondern auch auf Si\((321)\). Dies zeigt das erfolgreiche Wachstum von MnSi auf Si\((321)\) und Si\((531)\). Die letzteren Messungen ergeben außerdem einen Restwiderstand von weniger als der Hälfte für MnSi auf Si\((321)\) im Vergleich zu Si\((111)\). Dies kann durch die geringere Anzahl an Domänengrenzen erklärt werden und zeigt die erfolgreiche Unterdrückung einer Kristallzwillingsdomäne. Mit Hilfe der Restwiderstände und Hall-Messungen ist die Homogenität des Restwiderstandes und der Ladungsträgerdichte über einen großen Bereich des Wafers gezeigt. Im vierten Teil werden der Anisotrope Magnetwiderstand und der Planare Hall Effekt für MnSi abhängig von den Winkeln von Stromrichtung und Magnetfeld im Bezug auf die Kristallrichtung untersucht. Dies wurde als Werkzeug zur Identifikation der Skyrmionenphase vorgeschlagen [YKT+15]. Der Einfluss der höheren C\(_{3\mathrm{v}}\) Symmetrie des Kristallzwillingssystems und nicht der C\(_3\) Symmetrie des B20 Einzelkristalls ist gezeigt Der Unterschied könnte ein nützliches zusätzliches Werkzeug für die Demonstration der Kristallzwillingsunterdrückung sein. Dies ist allerdings nur für die Rotation mit spezifischen symmetrischen Oberflächen möglich und nicht für die untersuchte unsymmetrische Si\((321)\) Oberfläche. Messungen von MnSi Dünnschichten auf Si\((111)\) oberhalb des kritischen Magnetfeldes zeigen die Abnahme der Anisotropie-Parameter für den Anisotropen Magnetwiderstand und den Planaren Hall-Effekt für steigenden Widerstand, wie aus der Literatur zu erwarten [WC67]. Auch wenn ein direkter Vergleich zu den Parametern für Dünnschichten auf Si\((321)\) nicht möglich ist, können die größeren Parameterwerte bei Si\((321)\) mit der reduzierten Streuung an Domänengrenzen erklärt werden. Die Analyse unterhalb des kritischen Magnetfeldes, der Bereich in dem eine mögliche Skyrmionenphase zu erwarten wäre, wird durch magnetische Hysterese verkompliziert. Nur ein Phasenübergang beim kritischen Magnetfeld kann deutlich gezeigt werden. Damit bleibt die Frage zur Existenz der Skyrmionen in den MnSi Dünnschichten weiter offen. Die beste Möglichkeit diese Frage zu klären wäre ein direkterer Ansatz in Form von Lorentz-Transmissionselektronenmikroskopie, welche schon erfolgreich genutzt wurde um das Skyrmionengitter in dünnen Platten aus Volumenkristall MnSi zu visualisieren [TYY+12]. Für die Detektion von Skyrmionen in der Schichtebene müssten Lamellen für eine Seitenansicht präpariert werden, was prinzipiell möglich erscheint. Die gezeigte erfolgreiche Unterdrückung von einem der Kristallzwillinge für MnSi Schichten auf Si\((321)\) und Si\((531)\) sollte außerdem auf andere Materialsysteme übertragbar sein. Die Kristallzwillingsbildung in FeGe auf Si\((111)\) zu unterdrücken würde zu einem Skyrmionengitter mit einer einzigen Händigkeit bei annähernd Raumtemperatur führen [HC12]. Dies könnte Skyrmionen als Informationsträger in der Spintronik in greifbare Nähe bringen. Bibliographie: [IEM+85] M. Ishida, Y. Endoh, S. Mitsuda, Y. Ishikawa, and M. Tanaka. Crystal Chirality and Helicity of the Helical Spin Density Wave in MnSi. II. Polarized Neutron Diffraction. Journal of the Physical Society of Japan, 54(8):2975, 1985. [DBS+18] B. Das, B. Balasubramanian, R. Skomski, P. Mukherjee, S. R. Valloppilly, G. C. Hadjipanayis, and D. J. Sellmyer. Effect of size confinement on skyrmionic properties of MnSi nanomagnets. Nanoscale, 10(20):9504, 2018. [YKT+15] T. Yokouchi, N. Kanazawa, A. Tsukazaki, Y. Kozuka, A. Kikkawa, Y. Taguchi, M. Kawasaki, M. Ichikawa, F. Kagawa, and Y. Tokura. Formation of In-plane Skyrmions in Epitaxial MnSi Thin Films as Revealed by Planar Hall Effect. Journal of the Physical Society of Japan, 84(10):104708, 2015. [WC67] R. H. Walden and R. F. Cotellessa. Magnetoresistance of Nickel-Copper Single-Crystal Thin Films. Journal of Applied Physics, 38(3):1335, 1967. [TYY+12] A. Tonomura, X. Yu, K. Yanagisawa, T. Matsuda, Y. Onose, N. Kanazawa, H. S. Park, and Y. Tokura. Real-Space Observation of Skyrmion Lattice in Helimagnet MnSi Thin Samples. Nano Letters, 12(3):1673, 2012. [HC12] S. X. Huang and C. L. Chien. Extended Skyrmion Phase in Epitaxial FeGe(111) Thin Films. Physical Review Letters, 108(26):267201, 2012. KW - Molekularstrahlepitaxie KW - Mangansilicide KW - Magnetische Eigenschaft KW - MnSi KW - Epitaxy KW - XRD KW - Twin Domains KW - Twin Suppression KW - Magnetometry KW - Magnetoresistance KW - Anisotropic Magnetoresistance KW - Röntgendiffraktometrie KW - Zwillingsbildung KW - Magnetismus KW - Magnetowiderstand Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-184720 ER - TY - THES A1 - Tiwarekar, Vishakha Rakesh T1 - The APOBEC3G-regulated host factors REDD1 and KDELR2 restrict measles virus replication T1 - Die durch APOBEC3G-regulierten Wirtsfaktoren REDD1 und KDELR2 restringieren die Masernvirus Replikation N2 - Measles is an extremely contagious vaccine-preventable disease responsible for more than 90000 deaths worldwide annually. The number of deaths has declined from 8 million in the pre-vaccination era to few thousands every year due to the highly efficacious vaccine. However, this effective vaccine is still unreachable in many developing countries due to lack of infrastructure, while in developed countries too many people refuse vaccination. Specific antiviral compounds are not yet available. In the current situation, only an extensive vaccination approach along with effective antivirals could help to have a measles-free future. To develop an effective antiviral, detailed knowledge of viral-host interaction is required. This study was undertaken to understand the interaction between MV and the innate host restriction factor APOBEC3G (A3G), which is well-known for its activity against human immunodeficiency virus (HIV). Restriction of MV replication was not attributed to the cytidine deaminase function of A3G, instead, we identified a novel role of A3G in regulating cellular gene functions. Among two of the A3G regulated host factors, we found that REDD1 reduced MV replication, whereas, KDELR2 hampered MV haemagglutinin (H) surface transport thereby affecting viral release. REDD1, a negative regulator of mTORC1 signalling impaired MV replication by inhibiting mTORC1. A3G regulated REDD1 expression was demonstrated to inversely correlate with MV replication. siRNA mediated silencing of A3G in primary human blood lymphocytes (PBL) reduced REDD1 levels and simultaneously increased MV titres. Also, direct depletion of REDD1 improved MV replication in PBL, indicating its role in A3G mediated restriction of MV. Based on these finding, a new role of rapamycin, a pharmacological inhibitor of mTORC1, was uncovered in successfully diminishing MV replication in Vero as well as in human PBL. The ER and Golgi resident receptor KDELR2 indirectly affected MV by competing with MV-H for cellular chaperones. Due to the sequestering of chaperones by KDELR2, they can no longer assist in MV-H folding and subsequent surface expression. Taken together, the two A3G-regulated host factors REDD1 and KDELR2 are mainly responsible for mediating its antiviral activity against MV. N2 - Masern ist eine extrem ansteckende, durch Impfung verhinderbare Infektionskrankheit, die für mehr als 90000 Todesfälle jährlich weltweit verantwortlich ist. Die Zahl der Todesfälle nahm von ca. 8 Millionen in der Prä- Impf-Ära auf wenige Tausend pro Jahr aufgrund dieses effizienten Impfstoffs ab. Dieser ist jedoch aufgrund mangelnder Infrastruktur in vielen Entwicklungsländern nicht ausreichend verfügbar, oder die Impfung wird – vor allem in entwickelten Ländern – verweigert. Spezifische antivirale Substanzen sind noch nicht verfügbar. So könnte nur eine extensive Impfkampagne zu einer Masern-freien Zukunft führen. Um antivirale Substanzen zu generieren wird detailiertes Wissen über Virus-Wirt-Interaktionen benötigt. Diese Studie wurde unternommen um Interaktionen zwischen Masernviren (MV) und dem zellulären Restriktionsfaktor APOBEC3G (A3G), der allgemein bekannt für seine antivirale Wirkung gegen das humane Immundefizienzvirus (HIV) ist, zu charakterisieren. A3G hemmt die MV-Replikation nicht aufgrund seiner Cytidin-Desaminase-Funktion, sondern wir entdeckten eine neue Funktion des A3G, nämlich dass es die Expression zellulärer Faktoren reguliert. Wir fanden, dass unter den A3G-regulierten Wirtszellfaktoren REDD1 die MV-Replikation reduzierte, während KDELR2 den Transport des MV-Hämagglutinins (H) zur Zelloberfläche, und somit die Virusfreisetzung, inhibierte. REDD1, ein negativer Regulator des mTORC1-Signalübertragungswegs, reduzierte die MV-Replikation indem es mTORC1 inhibiert. Die Expression des durch A3G regulierten REDD1 korrelierte umgekehrt mit der MV Replikation. SiRNA-vermittelte Reduktion des A3G in primären humanen Lymphozyten des Bluts (PBL) führte zu einer Abnahme des REDD1 und gleichzeitig zu einer Zunahme des MV-Titers. Ebenso führte direktes Silencing des REDD1 zu einer verstärkten MV-Replikation in PBL, was seine Rolle bei der A3G-vermittelten Restriktion der MV-Replikation unterstreicht. Aufgrund dieser Befunde wurde auch eine neue Funktion des mTORC1-Inhibitors Rapamycin als Inhibitor der MV-Replikation in Vero-Zellen und primären PBL aufgedeckt. Der ER- und Golgi-residente Rezeptor KDELR2 wirkte sich indirekt auf die MV-Replikation aus, indem er mit dem MV-H um die Interaktion mit Chaperonen kompetiert. KDELR2 bindet Chaperone und verhindert so deren Interaktion mit MV-H und den Transport zur Zelloberfläche. Zusammenfassend lässt sich sagen, dass die beiden A3G-regulierten Wirtszellfaktoren REDD1 und KDELR2 hauptsächlich für die antivirale Aktivität des A3G gegen MV verantwortlich sind. KW - measles virus KW - restriction factors KW - APOBEC3G KW - REDD1 KW - KDELR2 Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-179526 ER - TY - JOUR A1 - Tiwarekar, Vishakha A1 - Fehrholz, Markus A1 - Schneider-Schaulies, Jürgen T1 - KDELR2 competes with measles virus envelope proteins for cellular chaperones reducing their chaperone-mediated cell surface transport JF - Viruses N2 - Recently, we found that the cytidine deaminase APOBEC3G (A3G) inhibits measles (MV) replication. Using a microarray, we identified differential regulation of several host genes upon ectopic expression of A3G. One of the up-regulated genes, the endoplasmic reticulum (ER) protein retention receptor KDELR2, reduced MV replication ~5 fold when it was over-expressed individually in Vero and CEM-SS T cells. Silencing of KDELR2 in A3G-expressing Vero cells abrogated the antiviral activity induced by A3G, confirming its role as an A3G-regulated antiviral host factor. Recognition of the KDEL (Lys-Asp-Glu-Leu) motif by KDEL receptors initiates the retrograde transport of soluble proteins that have escaped the ER and play an important role in ER quality control. Although KDELR2 over-expression reduced MV titers in cell cultures, we observed no interaction between KDELR2 and the MV hemagglutinin (H) protein. Instead, KDELR2 retained chaperones in the ER, which are required for the correct folding and transport of the MV envelope glycoproteins H and fusion protein (F) to the cell surface. Our data indicate that KDELR2 competes with MV envelope proteins for binding to calnexin and GRP78/Bip, and that this interaction limits the availability of the chaperones for MV proteins, causing the reduction of virus spread and titers. KW - measles virus KW - KDELR2 KW - calnexin KW - GRP78 KW - surface transport Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-197468 SN - 1999-4915 VL - 11 IS - 1 ER - TY - JOUR A1 - Tiffe, Theresa A1 - Morbach, Caroline A1 - Rücker, Viktoria A1 - Gelbrich, Götz A1 - Wagner, Martin A1 - Faller, Hermann A1 - Störk, Stefan A1 - Heuschmann, Peter U. T1 - Impact of patient beliefs on blood pressure control in the general population: findings from the population-based STAAB cohort study JF - International Journal of Hypertension N2 - Background. Effective antihypertensive treatment depends on patient compliance regarding prescribed medications. We assessed the impact of beliefs related towards antihypertensive medication on blood pressure control in a population-based sample treated for hypertension. Methods. We used data from the Characteristics and Course of Heart Failure Stages A-B and Determinants of Progression (STAAB) study investigating 5000 inhabitants aged 30 to 79 years from the general population of Würzburg, Germany. The Beliefs about Medicines Questionnaire German Version (BMQ-D) was provided in a subsample without established cardiovascular diseases (CVD) treated for hypertension. We evaluated the association between inadequately controlled hypertension (systolic RR >140/90 mmHg; >140/85 mmHg in diabetics) and reported concerns about and necessity of antihypertensive medication. Results. Data from 293 participants (49.5% women, median age 64 years [quartiles 56.0; 69.0]) entered the analysis. Despite medication, half of the participants (49.8%) were above the recommended blood pressure target. Stratified for sex, inadequately controlled hypertension was less frequent in women reporting higher levels of concerns (OR 0.36; 95%CI 0.17-0.74), whereas no such association was apparent in men. We found no association for specific-necessity in any model. Conclusion. Beliefs regarding the necessity of prescribed medication did not affect hypertension control. An inverse association between concerns about medication and inappropriately controlled hypertension was found for women only. Our findings highlight that medication-related beliefs constitute a serious barrier of successful implementation of treatment guidelines and underline the role of educational interventions taking into account sex-related differences. KW - hypertension Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-200992 VL - 2019 ER - TY - JOUR A1 - Tiane, Assia A1 - Schepers, Melissa A1 - Rombaut, Ben A1 - Hupperts, Raymond A1 - Prickaerts, Jos A1 - Hellings, Niels A1 - van den Hove, Daniel A1 - Vanmierlo, Tim T1 - From OPC to oligodendrocyte: an epigenetic journey JF - Cells N2 - Oligodendrocytes provide metabolic and functional support to neuronal cells, rendering them key players in the functioning of the central nervous system. Oligodendrocytes need to be newly formed from a pool of oligodendrocyte precursor cells (OPCs). The differentiation of OPCs into mature and myelinating cells is a multistep process, tightly controlled by spatiotemporal activation and repression of specific growth and transcription factors. While oligodendrocyte turnover is rather slow under physiological conditions, a disruption in this balanced differentiation process, for example in case of a differentiation block, could have devastating consequences during ageing and in pathological conditions, such as multiple sclerosis. Over the recent years, increasing evidence has shown that epigenetic mechanisms, such as DNA methylation, histone modifications, and microRNAs, are major contributors to OPC differentiation. In this review, we discuss how these epigenetic mechanisms orchestrate and influence oligodendrocyte maturation. These insights are a crucial starting point for studies that aim to identify the contribution of epigenetics in demyelinating diseases and may thus provide new therapeutic targets to induce myelin repair in the long run. KW - oligodendrocyte KW - epigenetics KW - myelination Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-193267 SN - 2073-4409 VL - 8 IS - 10 ER - TY - THES A1 - Tian, Yuehui T1 - Characterization of novel rhodopsins with light-regulated cGMP production or cGMP degradation T1 - Charakterisierung neuartiger Rhodopsine mit Licht-regulierter cGMP-Produktion oder cGMP-Degradation N2 - Photoreceptors are widely occurring in almost all kingdoms of life. They mediate the first step in sensing electromagnetic radiation of different wavelength. Absorption spectra are found within the strongest radiation from the sun and absorption usually triggers downstream signaling pathways. Until now, mainly 6 classes of representative photoreceptors are known: five water-soluble proteins, of these three classes of blue light-sensitive proteins including LOV (light-oxygen-voltage), BLUF (blue-light using FAD), and cryptochrome modules with flavin (vitamin B-related) nucleotides as chromophore; while two classes of yellow and red light-sensitive proteins consist of xanthopsin and phytochrome, respectively. Lastly, as uniquely integral membrane proteins, the class of rhodopsins can usually sense over a wide absorption spectrum, ranging from ultra-violet to green and even red light. Rhodopsins can be further divided into two types, i.e., microbial (type I) and animal (type II) rhodopsins. Rhodopsins consist of the protein opsin and the covalently bound chromophore retinal (vitamin A aldehyde). In this thesis, I focus on identification and characterization of novel type I opsins with guanylyl cyclase activity from green algae and a phosphodiesterase opsin from the protist Salpingoeca rosetta. Until 2014, all known type I and II rhodopsins showed a typical structure with seven transmembrane helices (7TM), an extracellular N-terminus and a cytosolic C-terminus. The proven function of the experimentally characterized type I rhodopsins was membrane transport of ions or the coupling to a transducer which enables phototaxis via a signaling chain. A completely new class of type I rhodopsins with enzymatic activity was identified in 2014. A light-activated guanylyl cyclase opsin was discovered in the fungus Blastocladiella emersonii which was named Cyclop (Cyclase opsin) by Gao et al. (2015), after heterologous expression and rigorous in-vitro characterization. BeCyclop is the first opsin for which an 8 transmembrane helices (8TM) structure was demonstrated by Gao et al. (2015). Earlier (2004), a novel class of enzymatic rhodopsins was predicted to exist in C. reinhardtii by expressed sequence tag (EST) and genome data, however, no functional data were provided up to now. The hypothetical rhodopsin included an N-terminal opsin domain, a fused two-component system with histidinekinase and response regulator domain, and a C-terminal guanylyl cyclase (GC) domain. This suggested that there could be a biochemical signaling cascade, integrating light-induction and ATP-dependent phosphate transfer, and as output the light-sensitive cGMP production. One of my projects focused on characterizing two such opsins from the green algae Chlamydomonas reinhardtii and Volvox carteri which we then named 2c-Cyclop (two-component Cyclase opsin), Cr2c-Cyclop and Vc2c-Cyclop, respectively. My results show that both 2c-Cyclops are light-inhibited GCs. Interestingly, Cr2c-Cyclop and Vc2c-Cyclop are very sensitive to light and ATP-dependent, whereby the action spectra of Cr2c-Cyclop and Vc2c-Cyclop peak at ~540 nm and ~560 nm, respectively. More importantly, guanylyl cyclase activity is dependent on continuous phosphate transfer between histidine kinase and response regulator. However, green light can dramatically block phosphoryl group transfer and inhibit cyclase activity. Accordingly, mutation of the retinal-binding lysine in the opsin domain resulted in GC activity and lacking light-inhibition. A novel rhodopsin phosphodiesterase from the protist Salpingoeca rosetta (SrRhoPDE) was discovered in 2017. However, the previous two studies of 2017 claimed a very weak or absent light-regulation. Here I give strong evidence for light-regulation by studying the activity of SrRhoPDE, expressed in Xenopus laevis oocytes, in-vitro at different cGMP concentrations. Surprisingly, hydrolysis of cGMP shows a ~100-fold higher turnover than that of cAMP. Light can enhance substrate affinity by decreasing the Km value for cGMP from 80 μM to 13 μM, but increases the maximum turnover only by ~30%. In addition, two key single mutants, SrRhoPDE K296A or K296M, can abolish the light-activation effect by interrupting a covalent bond of Schiff base type to the chromophore retinal. I also demonstrate that SrRhoPDE shows cytosolic N- and C- termini, most likely via an 8-TM structure. In the future, SrRhoPDE can be a potentially useful optogenetic tool for light-regulation of cGMP concentration, possibly after further improvements by genetic engineering. N2 - Photorezeptoren sind in fast allen Lebewesen vorzufinden. Sie vermitteln den ersten Schritt bei der Detektion von elektromagnetischer Strahlung unterschiedlicher Wellenlänge. Ihre Absorptionsspektren finden sich innerhalb des Bereichs der stärksten Sonnenstrahlung (UV bis nahes IR) und die Absorption löst normalerweise nachgelagerte Signalwege aus. Bis jetzt sind hauptsächlich 6 Klassen von Photorezeptoren bekannt: als wasserlösliche Proteine zunächst drei Klassen von Blaulicht-empfindlichen Modulen, die LOV-Domäne (Light/Oxygen/Voltage), die BLUF-Domäne (Blue Light sensing, Using FAD) und Cryptochrom mit Flavinen (Vitamin B-Komplex) als Chromophor, sowie Xanthopsine, die hauptsächlich für gelbes Licht und Phytochrome, die für Rotlicht empfindlich sind. Als integrale Membranproteine kann die Klasse der Rhodopsine jedoch ein breiteres Absorptionsspektrum aufweisen, je nach Rhodopsin empfindlich für UV/blaues, grünes oder sogar rotes Licht. Rhodopsine bestehen aus dem Protein Opsin und dem kovalent gebundenen Chromophor Retinal (Vitamin A-Aldehyd). Sie können weiter in zwei Typen unterteilt werden, mikrobielle (Typ I) und tierische (Typ II) Rhodopsine. In dieser Dissertation konzentriere ich mich auf die Identifizierung und Charakterisierung von neuen Typ I Opsinen mit Guanylylcyclase-Aktivität aus Grünalgen und einem Phosphodiesterase-Opsin aus dem Protisten Salpingoeca rosetta. Bis 2014 wiesen alle bekannten Rhodopsine eine typische Struktur mit sieben Transmembranhelices (7TM), einem extrazellulären N-Terminus und einem zytosolischen C- Terminus auf. Die nachgewiesene Funktion der experimentell charakterisierten Rhodopsine vom Typ I ist der Membrantransport von Ionen oder die Kopplung an einen Transducer, der die Phototaxis über eine Signalkette ermöglicht. Eine völlig neue Klasse von Typ-I Rhodopsinen mit enzymatischer Aktivität wurde 2014 gefunden. Ein lichtaktiviertes Guanylyl-Cyclase- Opsin wurde im Pilz Blastocladiella emersonii (Be) entdeckt, das von Gao et al. (2015) nach heterologer Expression und gründlicher in-vitro-Charakterisierung Cyclop (Cyclase opsin) genannt wurde. BeCyclop ist das erste Opsin, für das eine Struktur mit 8 Transmembranhelices (8TM) demonstriert wurde (Gao et al., 2015). Bereits früher (2004) wurde durch expressed sequence tag (EST) und Genom-Daten vorhergesagt, dass eine neue Klasse von enzymatischen Rhodopsinen in Chlamydomonas reinhardtii existiert, jedoch gelang bisher keine funktionelle Expression. Eines dieser hypothetischen Rhodopsine umfasste eine N-terminale Opsin- Domäne, ein fusioniertes Zweikomponentensystem mit Histidinkinase- und Regulator-Domäne und eine C-terminale Guanylylcyclase (GC). Dies legte nahe, dass das Protein eine biochemische Signalkaskade inkorporieren könnte, die Licht-Absorption und ATP-abhängigen Phosphattransfer integriert und eine lichtempfindliche cGMP-Produktion bewirkt. Eines meiner Projekte konzentrierte sich auf die Charakterisierung von zwei solchen Opsinen aus den Grünalgen C. reinhardtii und Volvox carteri, die wir nun 2c-Cyclop (Zweikomponenten-Cyclase-Opsin), d.h. Cr2c-Cyclop und Vc2c-Cyclop, nennen. Meine Ergebnisse zeigen, dass beide 2c-Cyclops durch Licht gehemmte GCs sind. Interessanterweise sind Cr2c-Cyclop und Vc2c-Cyclop sehr empfindlich gegenüber Licht und die cGMP- Produktion ist ATP-abhängig, wobei die Wirkungsspektren von Cr2c-Cyclop und Vc2c-Cyclop bei ~540 nm bzw. ~560 nm ihren Höhepunkt erreichen. Ich konnte zeigen, dass die Guanylyl- Cyclase-Aktivität von einem kontinuierlichen Phosphat-Transfer zwischen Histidinkinase und Response-Regulator abhängt. Grünes Licht kann jedoch den Phosphoryl-Gruppen-Transfer dramatisch blockieren und die Cyclase-Aktivität inhibieren. Dementsprechend führte die Mutation des Retinal-bindenden Lysins in der Opsindomäne zu einer cGMP Produktion ohne jegliche Lichtinhibierung. Eine neuartige Rhodopsin-Phosphodiesterase aus dem Protisten Salpingoeca rosetta (SrRhoPDE) wurde im Jahr 2017 entdeckt. Die vorangegangenen zwei Studien von 2017 zeigten jedoch eine sehr schwache oder fehlende Lichtregulation der PDE-Aktivität. Hier konnte ich eine starke Lichtregulation beweisen, indem ich die Aktivität von SrRhoPDE, exprimiert in Xenopus laevis Oozyten, in-vitro bei verschiedenen cGMP-Konzentrationen untersuchte. Überraschenderweise zeigt die Hydrolyse von cGMP einen etwa 100-fach höheren Umsatz als der von cAMP. Licht kann die Substrataffinität durch Verringern des Km-Werts für cGMP von 80 µM auf 13 µM erhöhen, erhöht jedoch den maximalen Umsatz nur um ~30%. Darüber hinaus können zwei Einzelmutanten, SrRhoPDE K296A oder K296M, den Lichtaktivierungseffekt aufheben, indem sie eine kovalente Bindung vom Schiff-Base-Typ an das Chromophor Retinal unterbrechen. Ich zeige auch, dass SrRhoPDE zytosolische N- und C-Termini aufweist, höchstwahrscheinlich über eine 8-TM-Struktur. In Zukunft könnte SrRhoPDE ein potentiell nützliches optogenetisches Werkzeug für die Lichtregulation der cGMP-Konzentration sein, möglicherweise nach weiteren Verbesserungen durch Gentechnik. KW - Photoreceptor KW - Rhodopsin KW - guanylyl cyclase (GC) KW - two-component Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-168143 ER - TY - JOUR A1 - Thölken, Clemens A1 - Thamm, Markus A1 - Erbacher, Christoph A1 - Lechner, Marcus T1 - Sequence and structural properties of circular RNAs in the brain of nurse and forager honeybees (Apis mellifera) JF - BMC Genomics N2 - Background The honeybee (Apis mellifera) represents a model organism for social insects displaying behavioral plasticity. This is reflected by an age-dependent task allocation. The most protruding tasks are performed by young nurse bees and older forager bees that take care of the brood inside the hive and collect food from outside the hive, respectively. The molecular mechanism leading to the transition from nurse bees to foragers is currently under intense research. Circular RNAs, however, were not considered in this context so far. As of today, this group of non-coding RNAs was only known to exist in two other insects, Drosophila melanogaster and Bombyx mori. Here we complement the state of circular RNA research with the first characterization in a social insect. Results We identified numerous circular RNAs in the brain of A. mellifera nurse bees and forager bees using RNA-Seq with exonuclease enrichment. Presence and circularity were verified for the most abundant representatives. Back-splicing in honeybee occurs further towards the end of transcripts and in transcripts with a high number of exons. The occurrence of circularized exons is correlated with length and CpG-content of their flanking introns. The latter coincides with increased DNA-methylation in the respective loci. For two prominent circular RNAs the abundance in worker bee brains was quantified in TaqMan assays. In line with previous findings of circular RNAs in Drosophila, circAmrsmep2 accumulates with increasing age of the insect. In contrast, the levels of circAmrad appear age-independent and correlate with the bee's task. Its parental gene is related to amnesia-resistant memory. Conclusions We provide the first characterization of circRNAs in a social insect. Many of the RNAs identified here show homologies to circular RNAs found in Drosophila and Bombyx, indicating that circular RNAs are a common feature among insects. We find that exon circularization is correlated to DNA-methylation at the flanking introns. The levels of circAmrad suggest a task-dependent abundance that is decoupled from age. Moreover, a GO term analysis shows an enrichment of task-related functions. We conclude that circular RNAs could be relevant for task allocation in honeybee and should be investigated further in this context. KW - circRNA KW - circular transcriptome sequencing KW - honeybee KW - brain KW - neuronal KW - Methylation KW - CpG KW - alternative splicing KW - behavioral plasticity Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-241302 VL - 20 ER - TY - JOUR A1 - Thiess, Torsten A1 - Mellerup, Soren K. A1 - Braunschweig, Holger T1 - B–B Cleavage and Ring-Expansion of a 1,4,2,3-Diazadiborinine with N-Heterocyclic Carbenes JF - Chemistry - A European Journal N2 - A 1,4,2,3‐diazadiborinine derivative was found to form Lewis adducts with strong two‐electron donors such as N‐heterocyclic and cyclic (alkyl)(amino)carbenes. Depending on the donor, some of these Lewis pairs are thermally unstable, converting to sole B,N‐embedded products upon gentle heating. The products of these reactions, which have been fully characterized by NMR spectroscopy, elemental analysis, and single‐crystal X‐ray diffraction, were identified as B,N‐heterocycles with fused 1,5,2,4‐diazadiborepine and 1,4,2‐diazaborinine rings. Computational modelling of the reaction mechanism provides insight into the formation of these unique structures, suggesting that a series of B−H, C−N, and B−B bond activation steps are responsible for these “intercalation” reactions between the 1,4,2,3‐diazadiborinine and NHCs. KW - B,N-heterocylcles KW - B-B bond activation KW - diazadiborinines KW - NHCs KW - ring-expansion reactions Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-206173 VL - 25 IS - 59 ER - TY - JOUR A1 - Thiem, Alexander A1 - Hesbacher, Sonja A1 - Kneitz, Hermann A1 - di Primio, Teresa A1 - Heppt, Markus V. A1 - Hermanns, Heike M. A1 - Goebeler, Matthias A1 - Meierjohann, Svenja A1 - Houben, Roland A1 - Schrama, David T1 - IFN-gamma-induced PD-L1 expression in melanoma depends on p53 expression JF - Journal of Experimental & Clinical Cancer Research N2 - Background Immune checkpoint inhibition and in particular anti-PD-1 immunotherapy have revolutionized the treatment of advanced melanoma. In this regard, higher tumoral PD-L1 protein (gene name: CD274) expression is associated with better clinical response and increased survival to anti-PD-1 therapy. Moreover, there is increasing evidence that tumor suppressor proteins are involved in immune regulation and are capable of modulating the expression of immune checkpoint proteins. Here, we determined the role of p53 protein (gene name: TP53) in the regulation of PD-L1 expression in melanoma. Methods We analyzed publicly available mRNA and protein expression data from the cancer genome/proteome atlas and performed immunohistochemistry on tumors with known TP53 status. Constitutive and IFN-ɣ-induced PD-L1 expression upon p53 knockdown in wildtype, TP53-mutated or JAK2-overexpressing melanoma cells or in cells, in which p53 was rendered transcriptionally inactive by CRISPR/Cas9, was determined by immunoblot or flow cytometry. Similarly, PD-L1 expression was investigated after overexpression of a transcriptionally-impaired p53 (L22Q, W23S) in TP53-wt or a TP53-knockout melanoma cell line. Immunoblot was applied to analyze the IFN-ɣ signaling pathway. Results For TP53-mutated tumors, an increased CD274 mRNA expression and a higher frequency of PD-L1 positivity was observed. Interestingly, positive correlations of IFNG mRNA and PD-L1 protein in both TP53-wt and -mutated samples and of p53 and PD-L1 protein suggest a non-transcriptional mode of action of p53. Indeed, cell line experiments revealed a diminished IFN-ɣ-induced PD-L1 expression upon p53 knockdown in both wildtype and TP53-mutated melanoma cells, which was not the case when p53 wildtype protein was rendered transcriptionally inactive or by ectopic expression of p53\(^{L22Q,W23S}\), a transcriptionally-impaired variant, in TP53-wt cells. Accordingly, expression of p53\(^{L22Q,W23S}\) in a TP53-knockout melanoma cell line boosted IFN-ɣ-induced PD-L1 expression. The impaired PD-L1-inducibility after p53 knockdown was associated with a reduced JAK2 expression in the cells and was almost abrogated by JAK2 overexpression. Conclusions While having only a small impact on basal PD-L1 expression, both wildtype and mutated p53 play an important positive role for IFN-ɣ-induced PD-L1 expression in melanoma cells by supporting JAK2 expression. Future studies should address, whether p53 expression levels might influence response to anti-PD-1 immunotherapy. KW - Melanoma KW - PD-L1 KW - CD274 KW - p53 KW - TP53 KW - JAK2 Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-201016 VL - 38 ER - TY - JOUR A1 - Tarau, Ioana-Sandra A1 - Berlin, Andreas A1 - Curcio, Christine A. A1 - Ach, Thomas T1 - The cytoskeleton of the retinal pigment epithelium: from normal aging to age-related macular degeneration JF - International Journal of Molecular Science N2 - The retinal pigment epithelium (RPE) is a unique epithelium, with major roles which are essential in the visual cycle and homeostasis of the outer retina. The RPE is a monolayer of polygonal and pigmented cells strategically placed between the neuroretina and Bruch membrane, adjacent to the fenestrated capillaries of the choriocapillaris. It shows strong apical (towards photoreceptors) to basal/basolateral (towards Bruch membrane) polarization. Multiple functions are bound to a complex structure of highly organized and polarized intracellular components: the cytoskeleton. A strong connection between the intracellular cytoskeleton and extracellular matrix is indispensable to maintaining the function of the RPE and thus, the photoreceptors. Impairments of these intracellular structures and the regular architecture they maintain often result in a disrupted cytoskeleton, which can be found in many retinal diseases, including age-related macular degeneration (AMD). This review article will give an overview of current knowledge on the molecules and proteins involved in cytoskeleton formation in cells, including RPE and how the cytoskeleton is affected under stress conditions — especially in AMD. KW - retinal pigment epithelium KW - cytoskeleton KW - aging KW - age-related macular degeneration KW - actin KW - microfilament KW - microtubules KW - stress fiber Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-201781 SN - 1422-0067 VL - 20 IS - 14 ER - TY - JOUR A1 - Tan, Aaron A1 - Babak, Maria V. A1 - Venkatesan, Gopalakrishnan A1 - Lim, Clarissa A1 - Klotz, Karl-Norbert A1 - Herr, Deron Raymond A1 - Cheong, Siew Lee A1 - Federico, Stephanie A1 - Spalluto, Giampiero A1 - Ong, Wei-Yi A1 - Chen, Yu Zong A1 - Loo, Jason Siau Ee A1 - Pastorin, Giorgia T1 - Design, Synthesis and Evaluation of New Indolylpyrimidylpiperazines for Gastrointestinal Cancer Therapy JF - Molecules N2 - Human A3 adenosine receptor hA3AR has been implicated in gastrointestinal cancer, where its cellular expression has been found increased, thus suggesting its potential as a molecular target for novel anticancer compounds. Observation made in our previous work indicated the importance of the carbonyl group of amide in the indolylpyrimidylpiperazine (IPP) for its human A2A adenosine receptor (hA2AAR) subtype binding selectivity over the other AR subtypes. Taking this observation into account, we structurally modified an indolylpyrimidylpiperazine (IPP) scaffold, 1 (a non-selective adenosine receptors’ ligand) into a modified IPP (mIPP) scaffold by switching the position of the carbonyl group, resulting in the formation of both ketone and tertiary amine groups in the new scaffold. Results showed that such modification diminished the A2A activity and instead conferred hA3AR agonistic activity. Among the new mIPP derivatives (3–6), compound 4 showed potential as a hA3AR partial agonist, with an Emax of 30% and EC50 of 2.89 ± 0.55 μM. In the cytotoxicity assays, compound 4 also exhibited higher cytotoxicity against both colorectal and liver cancer cells as compared to normal cells. Overall, this new series of compounds provide a promising starting point for further development of potent and selective hA3AR partial agonists for the treatment of gastrointestinal cancers. KW - gastrointestinal cancer KW - hA3AR KW - partial agonists KW - indolylpyrimidylpiperazines Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-193271 SN - 1420-3049 VL - 24 IS - 20 ER - TY - JOUR A1 - Süß, Jasmin A1 - Wehner, Johannes G. A1 - Dostál, Jakub A1 - Engel, Volker A1 - Brixner, Tobias T1 - Mapping of exciton-exciton annihilation in a molecular dimer via fifth-order femtosecond two-dimensional spectroscopy JF - Journal of Physical Chemistry Letters N2 - We present a theoretical study on exciton–exciton annihilation (EEA) in a molecular dimer. This process is monitored using a fifth-order coherent two-dimensional (2D) spectroscopy as was recently proposed by Dostál et al. [Nat. Commun. 9, 2466 (2018)]. Using an electronic three-level system for each monomer, we analyze the different paths which contribute to the 2D spectrum. The spectrum is determined by two entangled relaxation processes, namely, the EEA and the direct relaxation of higher lying excited states. It is shown that the change of the spectrum as a function of a pulse delay can be linked directly to the presence of the EEA process. KW - exciton-exciton KW - Exziton KW - Spektroskopie KW - EEA KW - 2Dimensionale Spektroskopie KW - exciton Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-178420 UR - https://aip.scitation.org/doi/full/10.1063/1.5086151 N1 - This article may be downloaded for personal use only. Any other use requires prior permission of the author and AIP Publishing. This article appeared in J. Süß et al., J. Chem. Phys. 150, 104304 (2019); https://doi.org/10.1063/1.5086151 and may be found at https://doi.org/10.1063/1.5086151. VL - 150 IS - 10 ER - TY - INPR A1 - Süß, Jasmin A1 - Wehner, Johannes G. A1 - Dostál, Jakub A1 - Engel, Volker A1 - Brixner, Tobias T1 - Mapping of exciton-exciton annihilation in a molecular dimer via fifth-order femtosecond two-dimensional spectroscopy T2 - Journal of Physical Chemistry Letters N2 - We present a theoretical study on exciton–exciton annihilation (EEA) in a molecular dimer. This process is monitored using a fifth-order coherent two-dimensional (2D) spectroscopy as was recently proposed by Dostál et al. [Nat. Commun. 9, 2466 (2018)]. Using an electronic three-level system for each monomer, we analyze the different paths which contribute to the 2D spectrum. The spectrum is determined by two entangled relaxation processes, namely, the EEA and the direct relaxation of higher lying excited states. It is shown that the change of the spectrum as a function of a pulse delay can be linked directly to the presence of the EEA process. KW - Exziton KW - Spektroskopie KW - Exciton KW - 2Dimensionale Spektroskopie KW - EEA KW - exciton-exciton Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-178482 UR - https://aip.scitation.org/doi/full/10.1063/1.5086151 N1 - This article may be downloaded for personal use only. Any other use requires prior permission of the author and AIP Publishing. This article appeared in J. Süß et al.,J. Chem. Phys. 150, 104304 (2019); https://doi.org/10.1063/1.5086151 and may be found at https://doi.org/10.1063/1.5086151 ER - TY - JOUR A1 - Suchotzki, Kristina A1 - Kakavand, Aileen A1 - Gamer, Matthias T1 - Validity of the reaction time concealed information test in a prison sample JF - Frontiers in Psychiatry N2 - Detecting whether a suspect possesses incriminating (e.g., crime-related) information can provide valuable decision aids in court. To this means, the Concealed Information Test (CIT) has been developed and is currently applied on a regular basis in Japan. But whereas research has revealed a high validity of the CIT in student and normal populations, research investigating its validity in forensic samples in scarce. This applies even more to the reaction time-based CIT (RT-CIT), where no such research is available so far. The current study tested the application of the RT-CIT for an imaginary mock crime scenario both in a sample of prisoners (n = 27) and a matched control group (n = 25). Results revealed a high validity of the RT-CIT for discriminating between crime-related and crime-unrelated information, visible in medium to very high effect sizes for error rates and reaction times. Interestingly, in accordance with theories that criminal offenders may have worse response inhibition capacities and that response inhibition plays a crucial role in the RT-CIT, CIT-effects in the error rates were even elevated in the prisoners compared to the control group. No support for this hypothesis could, however, be found in reaction time CIT-effects. Also, performance in a standard Stroop task, that was conducted to measure executive functioning, did not differ between both groups and no correlation was found between Stroop task performance and performance in the RT-CIT. Despite frequently raised concerns that the RT-CIT may not be applicable in non-student and forensic populations, our results thereby do suggest that such a use may be possible and that effects seem to be quite large. Future research should build up on these findings by increasing the realism of the crime and interrogation situation and by further investigating the replicability and the theoretical substantiation of increased effects in non-student and forensic samples. KW - concealed information test KW - deception KW - lying KW - reaction times KW - inmates KW - forensic sample Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-177714 VL - 9 IS - 745 ER - TY - JOUR A1 - Stuckensen, Kai A1 - Lamo-Espinosa, José M. A1 - Muiños-López, Emma A1 - Ripalda-Cemboráin, Purificación A1 - López-Martínez, Tania A1 - Iglesias, Elena A1 - Abizanda, Gloria A1 - Andreu, Ion A1 - Flandes-Iparraguirre, María A1 - Pons-Villanueva, Juan A1 - Elizalde, Reyes A1 - Nickel, Joachim A1 - Ewald, Andrea A1 - Gbureck, Uwe A1 - Prósper, Felipe A1 - Groll, Jürgen A1 - Granero-Moltó, Froilán T1 - Anisotropic cryostructured collagen scaffolds for efficient delivery of RhBMP−2 and enhanced bone regeneration JF - Materials N2 - In the treatment of bone non-unions, an alternative to bone autografts is the use of bone morphogenetic proteins (BMPs), e.g., BMP–2, BMP–7, with powerful osteoinductive and osteogenic properties. In clinical settings, these osteogenic factors are applied using absorbable collagen sponges for local controlled delivery. Major side effects of this strategy are derived from the supraphysiological doses of BMPs needed, which may induce ectopic bone formation, chronic inflammation, and excessive bone resorption. In order to increase the efficiency of the delivered BMPs, we designed cryostructured collagen scaffolds functionalized with hydroxyapatite, mimicking the structure of cortical bone (aligned porosity, anisotropic) or trabecular bone (random distributed porosity, isotropic). We hypothesize that an anisotropic structure would enhance the osteoconductive properties of the scaffolds by increasing the regenerative performance of the provided rhBMP–2. In vitro, both scaffolds presented similar mechanical properties, rhBMP–2 retention and delivery capacity, as well as scaffold degradation time. In vivo, anisotropic scaffolds demonstrated better bone regeneration capabilities in a rat femoral critical-size defect model by increasing the defect bridging. In conclusion, anisotropic cryostructured collagen scaffolds improve bone regeneration by increasing the efficiency of rhBMP–2 mediated bone healing. KW - rhBMP–2 KW - collagen sponge KW - cryostructured scaffolds KW - bone critical size defect Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-195966 SN - 1996-1944 VL - 12 IS - 19 ER - TY - JOUR A1 - Streng, Andrea A1 - Goettler, David A1 - Haerlein, Miriam A1 - Lehmann, Lisa A1 - Ulrich, Kristina A1 - Prifert, Christiane A1 - Krempl, Christine A1 - Weißbrich, Benedikt A1 - Liese, Johannes G. T1 - Spread and clinical severity of respiratory syncytial virus A genotype ON1 in Germany, 2011–2017 JF - BMC Infectious Diseases N2 - Background The Respiratory Syncytial Virus (RSV) A genotype ON1, which was first detected in Ontario (Canada) in 2010/11, appeared in Germany in 2011/12. Preliminary observations suggested a higher clinical severity in children infected with this new genotype. We investigated spread and disease severity of RSV-A ON1 in pediatric in- and outpatient settings. Methods During 2010/11 to 2016/17, clinical characteristics and respiratory samples from children with acute respiratory tract infections (RTI) were obtained from ongoing surveillance studies in 33 pediatric practices (PP), one pediatric hospital ward (PW) and 23 pediatric intensive care units (PICU) in Germany. RSV was detected in the respiratory samples by PCR; genotypes were identified by sequencing. Within each setting, clinical severity markers were compared between RSV-A ON1 and RSV-A non-ON1 genotypes. Results A total of 603 children with RSV-RTI were included (132 children in PP, 288 in PW, and 183 in PICU). Of these children, 341 (56.6%) were infected with RSV-A, 235 (39.0%) with RSV-B, and one child (0.2%) with both RSV-A and RSV-B; in 26 (4.3%) children, the subtype could not be identified. In the 341 RSV-A positive samples, genotype ON1 was detected in 247 (72.4%), NA1 in 92 (26.9%), and GA5 in 2 children (0.6%). RSV-A ON1, rarely observed in 2011/12, was the predominant RSV-A genotype in all settings by 2012/13 and remained predominant until 2016/17. Children in PP or PW infected with RSV-A ON1 did not show a more severe clinical course of disease compared with RSV-A non-ON1 infections. In the PICU group, hospital stay was one day longer (median 8 days, inter-quartile range (IQR) 7–12 vs. 7 days, IQR 5–9; p = 0.02) and duration of oxygen treatment two days longer (median 6 days, IQR 4–9 vs. 4 days, IQR 2–6; p = 0.03) for children infected with RSV-A ON1. Conclusions In children, RSV-A ON1 largely replaced RSV-A non-ON1 genotypes within two seasons and remained the predominant RSV-A genotype in Germany during subsequent seasons. A higher clinical severity of RSV-A ON1 was observed within the group of children receiving PICU treatment, whereas in other settings clinical severity of RSV-A ON1 and non-ON1 genotypes was largely similar. KW - Children KW - Respiratory tract infection KW - RSV-A ON1 KW - Epidemiology KW - Disease severity Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-201516 VL - 19 ER - TY - JOUR A1 - Streinzer, Martin A1 - Chakravorty, Jharna A1 - Neumayer, Johann A1 - Megu, Karsing A1 - Narah, Jaya A1 - Schmitt, Thomas A1 - Bharti, Himender A1 - Spaethe, Johannes A1 - Brockmann, Axel T1 - Species composition and elevational distribution of bumble bees (Hymenoptera, Apidae, Bombus Latreille) in the East Himalaya, Arunachal Pradesh, India JF - ZooKeys N2 - The East Himalaya is one of the world’s most biodiverse ecosystems. However, very little is known about the abundance and distribution of many plant and animal taxa in this region. Bumble bees are a group of cold-adapted and high elevation insects that fulfil an important ecological and economical function as pollinators of wild and agricultural flowering plants and crops. The Himalayan mountain range provides ample suitable habitats for bumble bees. Systematic study of Himalayan bumble bees began a few decades ago and the main focus has centred on the western region, while the eastern part of the mountain range has received little attention and only a few species have been verified. During a three-year survey, more than 700 bumble bee specimens of 21 species were collected in Arunachal Pradesh, the largest of the north-eastern states of India. The material included a range of species that were previously known from a limited number of collected specimens, which highlights the unique character of the East Himalayan ecosystem. Our results are an important first step towards a future assessment of species distribution, threat, and conservation. Clear elevation patterns of species diversity were observed, which raise important questions about the functional adaptations that allow bumble bees to thrive in this particularly moist region in the East Himalaya. KW - Alpine habitats KW - Apidae KW - conservation KW - global change KW - insect collection KW - pollination Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-201937 VL - 851 ER - TY - THES A1 - Stralla, Markus Roland T1 - Managerial incentives, earnings management and regulatory intervention in the banking sector T1 - Managementanreize, Ertragsmanagement und regulatorische Eingriffe im Bankensektor N2 - Die vorliegende Dissertation umfasst drei Forschungspapiere, welche sich mit folgenden Bankenthemen beschäftigen: Fehl-/Anreize und Risikoübernahme, Ertragssteuerung und die Regulierung von Aufsichtsräten. „Do cooperative banks suffer from moral hazard behaviour? Evidence in the context of efficiency and risk“: Wir verwenden Granger-Kausalitätstechniken, um die intertemporalen Beziehungen zwischen Risiko, Effizienz und Kapital zu bewerten. Wir verwenden zwei verschiedene Maße der Effizienz, die Kosten- und Gewinneffizienz, da diese unterschiedliche Managementfähigkeiten widerspiegeln. Eine ist die Fähigkeit, Kosten zu steuern, und die andere ist die Möglichkeit, Gewinne zu maximieren. Wir stellen fest, dass eine niedrigere Kosten- und Gewinneffizienz das Liquiditätsrisiko erhöht. Wir stellen ebenfalls fest, dass ein Anstieg des Kreditrisiko nachteilig für die Kosten und Gewinneffizienz ist. Am wichtigsten ist jedoch, dass unsere Ergebnisse eine positive Beziehung zwischen dem Kapital- und Kreditrisiko aufweisen, was zeigt, dass Moral Hazard Verhalten keine Anwendung (aufgrund von Haftungsbeschränkung und Einlagensicherung) bei unsere Stichprobe von Genossenschaftsbanken findet. Im Gegenteil, wir finden Hinweise darauf, dass Banken mit niedrigem Kapital ihre Kreditqualität in den Folgeperioden verbessern können. Diese Erkenntnisse können für die Regulierungsbehörden von Bedeutung sein, die bei der Einführung neuer regulatorischer Kapitalbeschränkungen die Geschäftsmodelle der Banken berücksichtigen sollten. „Earnings Management Modelling in the Banking Industry – Evaluating valuable approaches“: Die Rechungslegungsforschung hat den Bereich Earnings Management (EM) für die nichtfinanzielle und finanzielle Industrie gesondert untersucht. Da EM nicht direkt beobachtet werden kann, ist es für jede Forschungsfrage in jedem Umfeld wichtig, einen überprüfbare Proxy-Größe für EM zu finden. Grundsätzlich fehlt jedoch ein tiefes Verständnis dafür, welche Regressoren den Schätzvorgang verbessern können. Diese Studie versucht, diese Lücke zu schließen, und analysiert vorhandene Modellspezifikationen für diskretionäre Risikovorsorgen im Bankensektor, um gemeinsame und spezifische Muster zu identifizieren. Hierfür verwenden wir einen US-Datensatz, bestehend aus den Jahren 2005-2015 und wenden gängige Testverfahren an, um das Ausmaß von Messfehlern, Verzerrungen aufgrund von Extrembeobachtungen und weggelassenen Variablen sowie die Vorhersagekraft der diskretionären Proxy-Größen zu untersuchen. Unsere Ergebnisse zeigen, dass ein gründliches Verständnis des methodischen Modellierungsprozesses von EM im Bankensektor wichtig ist. Die derzeit etablierten Modelle zur Schätzung des EM sind angemessen, jedoch optimierbar. Insbesondere identifizieren wir die Variablen der notleidenden Vermögenswerte als die wichtigste Gruppe, während Variablen der Risikovorsorge und Nettoausbuchungen einen gewissen Wert erbringen können. Darüber hinaus zeigen unsere Ergebnisse, dass die Nichtlinearität bestimmter Regressoren ein Problem sein kann, das in zukünftigen Untersuchungen angegangen werden sollte, während wir weiterhin einige ausgelassene und möglicherweise korrelierte Variablen identifizieren, die einen Mehrwert generieren könnten. Die Ergebnisse zeigen auch, dass ein dynamischer, endogenität berücksichtigender Ansatz nicht unbedingt mit einer besseren Vorhersagekraft verknüpft ist. „Board Regulation and its Impact on Composition and Effects – Evidence from German Cooperative Bank“: In dieser Studie wird ein System-GMM-Schätzer verwendet, um die Auswirkungen möglicher regulatorischer Eingriffe auf die Besetzung von Aufsichtsratspositionen bei Genossenschaftsbanken zu untersuchen. Hierfür werden zwei verschiedene Untersuchungsdesigns angewandt. Zunächst untersucht der Autor die Änderungen der Aufsichtsratsstruktur vor und nach der Einführung des Gesetzes zur Stärkung der Finanzmarkt- und Versicherungsaufsicht (FinVAG). Zweitens schätzt der Autor den Einfluss von Doktoren und beruflicher Konzentration auf Änderungen des Bankrisikos unter Berücksichtigung der Umsetzung der FinVAG. Die untersuchte Stichprobe umfasst dabei 246 deutsche Genossenschaftsbanken in den Jahren von 2006 bis 2011. Bezüglich des Bankrisikos verwendet der Autor vier verschiedene Maße: das Kredit-, Kapital-, Liquiditätsrisiko und den Z-Score, wobei die ersten drei ebenfalls im FinVAG adressiert werden. Die Ergebnisse zeigen, dass die Umsetzung des FinVAGs zu strukturellen Änderungen in der Zusammensetzung der Aufsichtsräte führt, insbesondere auf Kosten der Landwirte. Darüber hinaus wirkt sich die Umsetzung risikoreduzierend und damit wie beabsichtigt auf alle Risikokennzahlen und Beziehungen zwischen Risikokennzahlen und Aufsichtsratsmerkmalen aus. Um die komplexe Beziehung zwischen Charakteristika der Aufsichtsräte und Risikomessgrößen aufzudecken, verwendet die Studie einen „two-step system-gmm“ Schätzer, um nicht beobachtete Heterogenität zu berücksichtigen, um Endogenitätsprobleme zu reduzieren. Die Ergebnisse können für Stakeholder, Aufsichtsbehörden, Vorgesetzte und Manager besonders relevant sein. N2 - The present dissertation includes three research papers dealing with the following banking topics: (dis-) incentives and risk taking, earnings management and the regulation of supervisory boards. „Do cooperative banks suffer from moral hazard behaviour? Evidence in the context of efficiency and risk“: We use Granger-causality techniques to evaluate the intertemporal relationships among risk, efficiency and capital. We use two different measures of bank efficiency, i.e., cost and profit efficiency, since these measures reflect different managerial abilities. One is the ability to manage costs, and the other is the ability to maximize profits. We find that lower cost and profit efficiency Granger-cause increases in liquidity risk. We also identify that credit risk negatively Granger-causes cost and profit efficiency. Most importantly, our results show a positive relationship between capital and credit risk, thus displaying that moral hazard (due to limited liability and deposit insurance) does not apply to our sample of cooperative banks. On the contrary, we find evidence that banks with low capital are able to improve their loan quality in subsequent periods. These findings may be important to regulators, who should consider banks’ business models when introducing new regulatory capital constraints. „Earnings Management Modelling in the Banking Industry – Evaluating valuable approaches“: Accounting research has separately studied the field of Earnings Management (EM) for non-financial and financial industries. Since EM cannot be observed directly, it is important for every research question in any setting to find a verifiable proxy for EM. However, we still lack a thorough understanding of what regressors can add value to the estimation process of EM in banks. This study tries to close this gap and analyses existing model specifications of discretionary loan loss provisions (LLP) in the banking sector to identify common pattern groups and specific patterns used. Thereupon, we use an US-dataset from 2005-2015 and apply prevalent test procedures to examine the extent of measurement errors, extreme performance and omitted-variable biases and predictive power of the discretionary proxies of each of the models. Our results indicate that a thorough understanding about the methodological modelling process of EM in the banking industry is important. The currently established models to estimate EM are appropriate yet optimizable. In particular, we identify non-performing asset patterns as the most important group, while loan loss allowances and net charge offs can add some value, though do not seem to be indispensable. In addition, our results show that non-linearity of certain regressors can be an issue, which should be addressed in future research, while we identify some omitted and possibly correlated variables that might add value to specifications in identifying non-discretionary LLP. Results also indicate that a dynamic model and endogeneity robust estimation approach is not necessarily linked to better prediction power. „Board Regulation and its Impact on Composition and Effects – Evidence from German Cooperative Bank“: This study employs a system GMM framework to examine the impact of potential regulatory intervention regarding the occupations of supervisory board members in cooperative banks. To achieve insights the study proceeds in two different ways. First, the author investigates the changes in board structure prior and following to the German Act to Strengthen Financial Market and Insurance Supervision (FinVAG). Second, the author estimates the influence of Ph.D. degree holders and occupational concentration on bank-risk changes in consideration of the implementation of FinVAG. Therefore, the sample consists of 246 German cooperative banks from 2006-2011. Regarding bank-risk the author applies four different measures: credit-, equity-, liquidity-risk and the Z-Score, with the former three also being addressed in FinVAG. Results indicate that the implementation of FinVAG results in structural changes in board composition, especially at the expense of farmers. In addition, the implementation affects all risk-measures and relations between risk-measures and supervisory board characteristics in a risk-reducing and therefore intended way. To disentangle the complex relationship between board characteristics and risk measures the study utilizes a two-step system GMM estimator to account for unobserved heterogeneity, and simultaneity in order to reduce endogeneity problems. The findings may be especially relevant for stakeholders, regulators, supervisors and managers. KW - Kreditgenossenschaft KW - Moral Hazard KW - Aufsichtsrat KW - Efficiency KW - Risk KW - Banking KW - Governance KW - Earnings management KW - Regulierung KW - Bank KW - Erfolgsplanung KW - Strategisches Management KW - Controlling KW - Bilanzpolitik KW - Anreize Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-172682 ER - TY - JOUR A1 - Strahl, André A1 - Gerlich, Christian A1 - Alpers, Georg W. A1 - Gehrke, Jörg A1 - Müller-Garnn, Annette A1 - Vogel, Heiner T1 - An instrument for quality assurance in work capacity evaluation: development, evaluation, and inter-rater reliability JF - BMC Health Services Research N2 - Background: Employees insured in pension insurance, who are incapable of working due to ill health, are entitled to a disability pension. To assess whether an individual meets the medical requirements to be considered as disabled, a work capacity evaluation is conducted. However, there are no official guidelines on how to perform an external quality assurance for this evaluation process. Furthermore, the quality of medical reports in the field of insurance medicine can vary substantially, and systematic evaluations are scarce. Reliability studies using peer review have repeatedly shown insufficient ability to distinguish between high, moderate and low quality. Considering literature recommendations, we developed an instrument to examine the quality of medical experts’reports. Methods: The peer review manual developed contains six quality domains (formal structure, clarity, transparency, completeness, medical-scientific principles, and efficiency) comprising 22 items. In addition, a superordinate criterion (survey confirmability) rank the overall quality and usefulness of a report. This criterion evaluates problems of innerlogic and reasoning. Development of the manual was assisted by experienced physicians in a pre-test. We examined the observable variance in peer judgements and reliability as the most important outcome criteria. To evaluate inter-rater reliability, 20 anonymous experts’ reports detailing the work capacity evaluation were reviewed by 19 trained raters (peers). Percentage agreement and Kendall’s W, a reliability measure of concordance between two or more peers, were calculated. A total of 325 reviews were conducted. Results: Agreement of peer judgements with respect to the superordinate criterion ranged from 29.2 to 87.5%. Kendall’s W for the quality domain items varied greatly, ranging from 0.09 to 0.88. With respect to the superordinate criterion, Kendall’s W was 0.39, which indicates fair agreement. The results of the percentage agreement revealed systemic peer preferences for certain deficit scale categories. Conclusion: The superordinate criterion was not sufficiently reliable. However, in comparison to other reliability studies, this criterion showed an equivalent reliability value. This report aims to encourage further efforts to improve evaluation instruments. To reduce disagreement between peer judgments, we propose the revision of the peer review instrumentand the development and implementation of a standardized rater training to improve reliability. KW - work capacity evaluation KW - insurance medicine KW - quality assurance KW - peer review KW - reliability Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-200289 VL - 19 ER - TY - JOUR A1 - Steuer Costa, Wagner A1 - Van der Auwera, Petrus A1 - Glock, Caspar A1 - Liewald, Jana F. A1 - Bach, Maximilian A1 - Schüler, Christina A1 - Wabnig, Sebastian A1 - Oranth, Alexandra A1 - Masurat, Florentin A1 - Bringmann, Henrik A1 - Schoofs, Liliane A1 - Stelzer, Ernst H. K. A1 - Fischer, Sabine C. A1 - Gottschalk, Alexander T1 - A GABAergic and peptidergic sleep neuron as a locomotion stop neuron with compartmentalized Ca2+ dynamics JF - Nature Communications N2 - Animals must slow or halt locomotion to integrate sensory inputs or to change direction. In Caenorhabditis elegans, the GABAergic and peptidergic neuron RIS mediates developmentally timed quiescence. Here, we show RIS functions additionally as a locomotion stop neuron. RIS optogenetic stimulation caused acute and persistent inhibition of locomotion and pharyngeal pumping, phenotypes requiring FLP-11 neuropeptides and GABA. RIS photoactivation allows the animal to maintain its body posture by sustaining muscle tone, yet inactivating motor neuron oscillatory activity. During locomotion, RIS axonal Ca2+ signals revealed functional compartmentalization: Activity in the nerve ring process correlated with locomotion stop, while activity in a branch correlated with induced reversals. GABA was required to induce, and FLP-11 neuropeptides were required to sustain locomotion stop. RIS attenuates neuronal activity and inhibits movement, possibly enabling sensory integration and decision making, and exemplifies dual use of one cell across development in a compact nervous system. KW - Cellular neuroscience KW - Neural circuits Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-223273 VL - 10 ER - TY - INPR A1 - Stennett, Tom E. A1 - Bissinger, Philipp A1 - Griesbeck, Stefanie A1 - Ullrich, Stefan A1 - Krummenacher, Ivo A1 - Auth, Michael A1 - Sperlich, Andreas A1 - Stolte, Matthias A1 - Radacki, Krzysztof A1 - Yao, Chang-Jiang A1 - Würthner, Frank A1 - Steffen, Andreas A1 - Marder, Todd B. A1 - Braunschweig, Holger T1 - Near-Infrared Quadrupolar Chromophores Combining Three-Coordinate Boron-Based Superdonor and Superacceptor Units T2 - Angewandte Chemie, International Edition N2 - In this work, two new quadrupolar A-π-D-π-A chromophores have been prepared featuring a strongly electron- donating diborene core and strongly electron-accepting dimesitylboryl F(BMes2) and bis(2,4,6-tris(trifluoromethyl)phenyl)boryl (BMes2) end groups. Analysis of the compounds by NMR spectroscopy, X-ray crystallography, cyclic voltammetry and UV-vis-NIR absorption and emission spectroscopy indicated that the compounds possess extended conjugated π-systems spanning their B4C8 cores. The combination of exceptionally potent π-donor (diborene) and π- acceptor (diarylboryl) groups, both based on trigonal boron, leads to very small HOMO-LUMO gaps, resulting in strong absorption in the near-IR region with maxima in THF at 840 and 1092 nm, respectively, and very high extinction coefficients of ca. 120,000 M-1cm-1. Both molecules also display weak near-IR fluorescence with small Stokes shifts. KW - boron KW - near-IR chromophores KW - conjugation KW - low-valent compounds KW - synthesis Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-180391 N1 - This is the pre-peer reviewed version of the following article: T. E. Stennett, P. Bissinger, S. Griesbeck, S. Ullrich, I. Krummenacher, M. Auth, A. Sperlich, M. Stolte, K. Radacki, C.-J. Yao, F. Wuerthner, A. Steffen, T. B. Marder, H. Braunschweig, Angew. Chem. Int. Ed. 2019, 58, 6449. , which has been published in final form at https://doi.org/10.1002/anie.201900889. This article may be used for non-commercial purposes in accordance with Wiley Terms and Conditions for Use of Self-Archived Versions. ER - TY - JOUR A1 - Stengel, Helena A1 - Vural, Atay A1 - Brunder, Anna-Michelle A1 - Heinius, Annika A1 - Appeltshauser, Luise A1 - Fiebig, Bianca A1 - Giese, Florian A1 - Dresel, Christian A1 - Papagianni, Aikaterini A1 - Birklein, Frank A1 - Weis, Joachim A1 - Huchtemann, Tessa A1 - Schmidt, Christian A1 - Körtvelyessy, Peter A1 - Villmann, Carmen A1 - Meinl, Edgar A1 - Sommer, Claudia A1 - Leypoldt, Frank A1 - Doppler, Kathrin T1 - Anti–pan-neurofascin IgG3 as a marker of fulminant autoimmune neuropathy JF - Neurology: Neuroimmunology & Neuroinflammation N2 - Objective To identify and characterize patients with autoantibodies against different neurofascin (NF) isoforms. Methods Screening of a large cohort of patient sera for anti-NF autoantibodies by ELISA and further characterization by cell-based assays, epitope mapping, and complement binding assays. Results Two different clinical phenotypes became apparent in this study: The well-known clinical picture of subacute-onset severe sensorimotor neuropathy with tremor that is known to be associated with IgG4 autoantibodies against the paranodal isoform NF-155 was found in 2 patients. The second phenotype with a dramatic course of disease with tetraplegia and almost locked-in syndrome was associated with IgG3 autoantibodies against nodal and paranodal isoforms of NF in 3 patients. The epitope against which these autoantibodies were directed in this second phenotype was the common Ig domain found in all 3 NF isoforms. In contrast, anti–NF-155 IgG4 were directed against the NF-155–specific Fn3Fn4 domain. The description of a second phenotype of anti–NF-associated neuropathy is in line with some case reports of similar patients that were published in the last year. Conclusions Our results indicate that anti–pan-NF-associated neuropathy differs from anti–NF-155-associated neuropathy, and epitope and subclass play a major role in the pathogenesis and severity of anti–NF-associated neuropathy and should be determined to correctly classify patients, also in respect to possible differences in therapeutic response. KW - neurology Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-202462 VL - 6 IS - 5 ER - TY - JOUR A1 - Steinmetzger, Christian A1 - Bessi, Irene A1 - Lenz, Ann-Kathrin A1 - Höbartner, Claudia T1 - Structure-fluorescence activation relationships of a large Stokes shift fluorogenic RNA aptamer JF - Nucleic Acids Research N2 - The Chili RNA aptamer is a 52 nt long fluorogen-activating RNA aptamer (FLAP) that confers fluorescence to structurally diverse derivatives of fluorescent protein chromophores. A key feature of Chili is the formation of highly stable complexes with different ligands, which exhibit bright, highly Stokes-shifted fluorescence emission. In this work, we have analyzed the interactions between the Chili RNA and a family of conditionally fluorescent ligands using a variety of spectroscopic, calorimetric and biochemical techniques to reveal key structure - fluorescence activation relationships (SFARs). The ligands under investigation form two categories with emission maxima of ~540 nm or ~590 nm, respectively, and bind with affinities in the nanomolar to low-micromolar range. Isothermal titration calorimetry was used to elucidate the enthalpic and entropic contributions to binding affinity for a cationic ligand that is unique to the Chili aptamer. In addition to fluorescence activation, ligand binding was also observed by NMR spectroscopy, revealing characteristic signals for the formation of a G-quadruplex only upon ligand binding. These data shed light on the molecular features required and responsible for the large Stokes shift and the strong fluorescence enhancement of red and green emitting RNA-chromophore complexes. KW - Chili RNA Aptamer KW - fluorogen-activating RNA aptamer (FLAP) KW - Stokes-shifted fluorescence emission KW - key structure - fluorescence activation relationships (SFARs) KW - ligand binding Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-192340 ER - TY - THES A1 - Stein, Nikolai Werner T1 - Advanced Analytics in Operations Management and Information Systems: Methods and Applications T1 - Advanced Analytics im Operations Management und Information Systems: Methoden und Anwendungen N2 - Die digitale Transformation der Gesellschaft birgt enorme Potenziale für Unternehmen aus allen Sektoren. Diese verfügen aufgrund neuer Datenquellen, wachsender Rechenleistung und verbesserter Konnektivität über rasant steigende Datenmengen. Um im digitalen Wandel zu bestehen und Wettbewerbsvorteile in Bezug auf Effizienz und Effektivität heben zu können müssen Unternehmen die verfügbaren Daten nutzen und datengetriebene Entscheidungsprozesse etablieren. Dennoch verwendet die Mehrheit der Firmen lediglich Tools aus dem Bereich „descriptive analytics“ und nur ein kleiner Teil der Unternehmen macht bereits heute von den Möglichkeiten der „predictive analytics“ und „prescriptive analytics“ Gebrauch. Ziel dieser Dissertation, die aus vier inhaltlich abgeschlossenen Teilen besteht, ist es, Einsatzmöglichkeiten von „prescriptive analytics“ zu identifizieren. Da prädiktive Modelle eine wesentliche Voraussetzung für „prescriptive analytics“ sind, thematisieren die ersten beiden Teile dieser Arbeit Verfahren aus dem Bereich „predictive analytics.“ Ausgehend von Verfahren des maschinellen Lernens wird zunächst die Entwicklung eines prädiktiven Modells am Beispiel der Kapazitäts- und Personalplanung bei einem IT-Beratungsunternehmen veranschaulicht. Im Anschluss wird eine Toolbox für Data Science Anwendungen entwickelt. Diese stellt Entscheidungsträgern Richtlinien und bewährte Verfahren für die Modellierung, das Feature Engineering und die Modellinterpretation zur Verfügung. Der Einsatz der Toolbox wird am Beispiel von Daten eines großen deutschen Industrieunternehmens veranschaulicht. Verbesserten Prognosen, die von leistungsfähigen Vorhersagemodellen bereitgestellt werden, erlauben es Entscheidungsträgern in einigen Situationen bessere Entscheidungen zu treffen und auf diese Weise einen Mehrwert zu generieren. In vielen komplexen Entscheidungssituationen ist die Ableitungen von besseren Politiken aus zur Verfügung stehenden Prognosen jedoch oft nicht trivial und erfordert die Entwicklung neuer Planungsalgorithmen. Aus diesem Grund fokussieren sich die letzten beiden Teile dieser Arbeit auf Verfahren aus dem Bereich „prescriptive analytics“. Hierzu wird zunächst analysiert, wie die Vorhersagen prädiktiver Modelle in präskriptive Politiken zur Lösung eines „Optimal Searcher Path Problem“ übersetzt werden können. Trotz beeindruckender Fortschritte in der Forschung im Bereich künstlicher Intelligenz sind die Vorhersagen prädiktiver Modelle auch heute noch mit einer gewissen Unsicherheit behaftet. Der letzte Teil dieser Arbeit schlägt einen präskriptiven Ansatz vor, der diese Unsicherheit berücksichtigt. Insbesondere wird ein datengetriebenes Verfahren für die Einsatzplanung im Außendienst entwickelt. Dieser Ansatz integriert Vorhersagen bezüglich der Erfolgswahrscheinlichkeiten und die Modellqualität des entsprechenden Vorhersagemodells in ein „Team Orienteering Problem.“ N2 - The digital transformation of business and society presents enormous potentials for companies across all sectors. Fueled by massive advances in data generation, computing power, and connectivity, modern organizations have access to gigantic amounts of data. Companies seek to establish data-driven decision cultures to leverage competitive advantages in terms of efficiency and effectiveness. While most companies focus on descriptive tools such as reporting, dashboards, and advanced visualization, only a small fraction already leverages advanced analytics (i.e., predictive and prescriptive analytics) to foster data-driven decision-making today. Therefore, this thesis set out to investigate potential opportunities to leverage prescriptive analytics in four different independent parts. As predictive models are an essential prerequisite for prescriptive analytics, the first two parts of this work focus on predictive analytics. Building on state-of-the-art machine learning techniques, we showcase the development of a predictive model in the context of capacity planning and staffing at an IT consulting company. Subsequently, we focus on predictive analytics applications in the manufacturing sector. More specifically, we present a data science toolbox providing guidelines and best practices for modeling, feature engineering, and model interpretation to manufacturing decision-makers. We showcase the application of this toolbox on a large data-set from a German manufacturing company. Merely using the improved forecasts provided by powerful predictive models enables decision-makers to generate additional business value in some situations. However, many complex tasks require elaborate operational planning procedures. Here, transforming additional information into valuable actions requires new planning algorithms. Therefore, the latter two parts of this thesis focus on prescriptive analytics. To this end, we analyze how prescriptive analytics can be utilized to determine policies for an optimal searcher path problem based on predictive models. While rapid advances in artificial intelligence research boost the predictive power of machine learning models, a model uncertainty remains in most settings. The last part of this work proposes a prescriptive approach that accounts for the fact that predictions are imperfect and that the arising uncertainty needs to be considered. More specifically, it presents a data-driven approach to sales-force scheduling. Based on a large data set, a model to predictive the benefit of additional sales effort is trained. Subsequently, the predictions, as well as the prediction quality, are embedded into the underlying team orienteering problem to determine optimized schedules. KW - Operations Management KW - Managementinformationssystem KW - Entscheidungsunterstützung KW - Maschinelles Lernen KW - Big Data KW - Advanced Analytics KW - Prescriptive Analytics KW - Predictive Analytics KW - Entscheidungsunterstützungssystem KW - Wirtschaftsinformatik KW - Tourenplanung Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-192668 ER - TY - JOUR A1 - Stegner, David A1 - Klaus, Vanessa A1 - Nieswandt, Bernhard T1 - Platelets as modulators of cerebral ischemia/reperfusion injury JF - Frontiers in Immunology N2 - Ischemic stroke is among the leading causes of disability and death worldwide. In acute ischemic stroke, the rapid recanalization of occluded cranial vessels is the primary therapeutic aim. However, experimental data (obtained using mostly the transient middle cerebral artery occlusion model) indicates that progressive stroke can still develop despite successful recanalization, a process termed “reperfusion injury.” Mounting experimental evidence suggests that platelets and T cells contribute to cerebral ischemia/reperfusion injury, and ischemic stroke is increasingly considered a thrombo-inflammatory disease. The interaction of von Willebrand factor and its receptor on the platelet surface, glycoprotein Ib, as well as many activatory platelet receptors and platelet degranulation contribute to secondary infarct growth in this setting. In contrast, interference with GPIIb/IIIa-dependent platelet aggregation and thrombus formation does not improve the outcome of acute brain ischemia but dramatically increases the susceptibility to intracranial hemorrhage. Here, we summarize the current understanding of the mechanisms and the potential translational impact of platelet contributions to cerebral ischemia/reperfusion injury. KW - thrombo-inflammation KW - ischemic stroke KW - platelet KW - glycoprotein Ibα KW - platelet degranulation Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-195748 SN - 1664-3224 VL - 10 IS - 2505 ER - TY - JOUR A1 - Staiger, Simona A1 - Seufert, Pascal A1 - Arand, Katja A1 - Burghardt, Markus A1 - Popp, Christian A1 - Riederer, Markus T1 - The permeation barrier of plant cuticles: uptake of active ingredients is limited by very long-chain aliphatic rather than cyclic wax compounds JF - Pest Management Science N2 - BACKGROUND: The barrier to diffusion of organic solutes across the plant cuticle is composed of waxes consisting of very long-chain aliphatic (VLCA) and, to varying degrees, cyclic compounds like pentacyclic triterpenoids. The roles of both fractions in controlling cuticular penetration by organic solutes, e.g. the active ingredients (AI) of pesticides, are unknown to date. We studied thepermeabilityof isolated leaf cuticularmembranes from Garcinia xanthochymus andPrunus laurocerasus for lipophilic azoxystrobin and theobromine as model compounds for hydrophilic AIs. RESULTS: The wax of P. laurocerasus consists of VLCA (12%) and cyclic compounds (88%), whereas VLCAs make up 97% of the wax of G. xanthochymus.We showthat treating isolated cuticles with methanol almost quantitatively releases the cyclic fraction while leaving the VLCA fraction essentially intact. All VLCAs were subsequently removed using chloroform. In both species, the permeance of the two model compounds did not change significantly after methanol treatment, whereas chloroform extraction had a large effect on organic solute permeability. CONCLUSION: The VLCA wax fractionmakes up the permeability barrier for organic solutes, whereas cyclic compounds even in high amounts have a negligible role. This is of significance when optimizing the foliar uptake of pesticides. KW - cuticular permeability KW - active ingredients KW - very long-chain aliphatic compounds KW - cyclic compounds KW - pesicicles Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-204778 VL - 75 IS - 12 ER - TY - JOUR A1 - Srivastava, Mugdha A1 - Bencurova, Elena A1 - Gupta, Shishir K. A1 - Weiss, Esther A1 - Löffler, Jürgen A1 - Dandekar, Thomas T1 - Aspergillus fumigatus challenged by human dendritic cells: metabolic and regulatory pathway responses testify a tight battle JF - Frontiers in Cellular and Infection Microbiology N2 - Dendritic cells (DCs) are antigen presenting cells which serve as a passage between the innate and the acquired immunity. Aspergillosis is a major lethal condition in immunocompromised patients caused by the adaptable saprophytic fungus Aspergillus fumigatus. The healthy human immune system is capable to ward off A. fumigatus infections however immune-deficient patients are highly vulnerable to invasive aspergillosis. A. fumigatus can persist during infection due to its ability to survive the immune response of human DCs. Therefore, the study of the metabolism specific to the context of infection may allow us to gain insight into the adaptation strategies of both the pathogen and the immune cells. We established a metabolic model of A. fumigatus central metabolism during infection of DCs and calculated the metabolic pathway (elementary modes; EMs). Transcriptome data were used to identify pathways activated when A. fumigatus is challenged with DCs. In particular, amino acid metabolic pathways, alternative carbon metabolic pathways and stress regulating enzymes were found to be active. Metabolic flux modeling identified further active enzymes such as alcohol dehydrogenase, inositol oxygenase and GTP cyclohydrolase participating in different stress responses in A. fumigatus. These were further validated by qRT-PCR from RNA extracted under these different conditions. For DCs, we outlined the activation of metabolic pathways in response to the confrontation with A. fumigatus. We found the fatty acid metabolism plays a crucial role, along with other metabolic changes. The gene expression data and their analysis illuminate additional regulatory pathways activated in the DCs apart from interleukin regulation. In particular, Toll-like receptor signaling, NOD-like receptor signaling and RIG-I-like receptor signaling were active pathways. Moreover, we identified subnetworks and several novel key regulators such as UBC, EGFR, and CUL3 of DCs to be activated in response to A. fumigatus. In conclusion, we analyze the metabolic and regulatory responses of A. fumigatus and DCs when confronted with each other. KW - infection KW - dendritic cells KW - Aspergillus fumigalus KW - metabolic modelling KW - signalling Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-201368 VL - 9 ER - TY - JOUR A1 - Springer, Jan A1 - Walther, Grit A1 - Rickerts, Volker A1 - Hamprecht, Axel A1 - Willinger, Birgit A1 - Teschner, Daniel A1 - Einsele, Hermann A1 - Kurzai, Oliver A1 - Loeffler, Juergen T1 - Detection of Fusarium Species in Clinical Specimens by Probe-Based Real-Time PCR JF - Journal of Fungi N2 - The mold Fusarium is a ubiquitous fungus causing plant, animal and human infections. In humans, Fusarium spp. are the major cause of eye infections in patients wearing contact lenses or after local trauma. Systemic infections by Fusarium spp. mainly occur in immunosuppressed patients and can disseminate throughout the human body. Due to high levels of resistance to antifungals a fast identification of the causative agent is an urgent need. By using a probe-based real-time PCR assay specific for the genus Fusarium we analysed several different clinical specimens detecting Fusarium spp. commonly found in clinical samples in Germany. Also, a large collection of lung fluid samples of haematological patients was analysed (n = 243). In these, two samples (0.8%) were reproducibly positive, but only one could be confirmed by sequencing. For this case of probable invasive fungal disease (IFD) culture was positive for Fusarium species. Here we describe a rapid, probe-based real-time PCR assay to specifically detect DNA from a broad range of Fusarium species and its application to clinically relevant specimens. KW - probe-based real-time PCR KW - Fusarium KW - bronchoalveolar lavage fluid KW - fungal molecular diagnostics Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-193111 SN - 2309-608X VL - 5 IS - 4 ER - TY - THES A1 - Soares Machado, Jéssica T1 - Dosimetry-based Assessment of Radiation-associated Cancer risk for \(^9\)\(^9\)\(^m\)Tc-MAG3 Scans in Infants and Optimization of Administered Activities for \(^6\)\(^8\)Ga-labelled Peptides in Children and Adolescents T1 - Dosimetrie-basierte Abschätzung des strahlungsassoziierten Krebsrisikos für \(^9\)\(^9\)\(^m\)Tc-MAG3-Scans bei Säuglingen und Optimierung der verabreichten Aktivitäten für \(^6\)\(^8\)Ga-markierte Peptide bei Kindern und Jugendlichen N2 - In 2006, 0.18 Mio pediatric nuclear medicine diagnostic exams were performed worldwide. However, for most of the radiopharmaceuticals used data on biokinetics and, as a consequence on dosimetry, are missing or have not been made publicly available. Therefore, most of the dosimetry assessments presented today for diagnostic agents in children and adolescents rely on the biokinetics data of adults. Even for one of the most common nuclear medicine exams for this patient group, renal scintigraphy with 99mTc-MAG3 for assessing renal function measured data on biokinetics is available only from a study performed on four children of different ages. In particular, renal scans are among the most frequent exams performed on infants and toddlers. Due to the young age, this patient group can be classified as a risk group with a higher probability of developing stochastic radiation effects compared to adults. As there are only limited data on biokinetics and dosimetry in this patient group, the aim of this study is to reassess the dosimetry and the associated radiation risk for a larger number of infants undergoing 99mTc-MAG3 renal scans based on a retrospective analysis of existing patient data. Data were collected retrospectively from 34 patients younger than 20 months with normal (20 patients) and abnormal renal function (14 patients) undergoing 99mTc-MAG3 scans. The patient-specific organ activity was estimated based on a retrospective calibration which was performed based on a set of two 3D-printed infant kidneys (newborns: 8.6 ml; 1-year-old: 23.4 ml) filled with known activities. Both phantoms were scanned at different positions along the anteroposterior axis inside a water phantom, providing depth- and size-dependent attenuation correction factors for planar imaging. Time-activity curves were determined by drawing kidney, bladder, and whole body regions-of-interest for each patient, and subsequently applying the calibration factor for conversion of counts to activity. Patient-specific time-integrated activity coefficients were obtained by integrating the organ-specific time-activity curves. Absorbed and effective dose coefficients for each patient were assessed with OLINDA/EXM for the provided newborn and 1-year-old phantom. Based on absorbed dose values, the radiation risk estimation was performed individually for each of the 34 patients with the National Cancer Institute’s Radiation Risk Assessment Tool. The patients’ organ-specific mean absorbed dose coefficients for the patients with normal renal function were 0.04±0.03 mGy/MBq for the kidneys and 0.27±0.24 mGy/MBq for the bladder. This resulted in a mean effective dose coefficient of 0.02±0.02 mSv/MBq. Based on the dosimetry results, the evaluation of the excess lifetime risk (ELR) for the development of radiation-induced cancer showed that the group of newborns has an ELR of 16.8 per 100,000 persons, which is higher in comparison with the 1-year-old group with an ELR of 14.7 per 100,000 persons. With regard to the 14 patients with abnormal renal function, the mean values for the organ absorbed dose coefficients for the patients were: 0.40±0.34 mGy/MBq for the kidneys and 0.46±0.37 mGy/MBq for the bladder. The corresponding effective dose coefficients (mSv/MBq) was: 0.05±0.02 mSv/MBq. The mean ELR (per 100,000 persons) for developing cancer from radiation exposure for patients with abnormal renal function was 29.2±18.7 per 100,000 persons. As a result, the radiation-associated stochastic risk increases with the organ doses, taking age- and gender-specific influences into account. Overall, the lifetime radiation risk associated with the 99mTc-MAG3 scans is very low in comparison to the general population risk for developing cancer. Furthermore, due to the increasing demand for PET-scans in children and adolescents with 68Ga-labelled peptides, in this work published data sets for those compounds were analyzed to derive recommendations for the administered activities in children and adolescents. The recommendation for the activities to be administered were based on the weight-independent effective dose model, proposed by the EANM Pediatric Dosage Card for application in pediatric nuclear medicine. The aim was to derive recommendations on administered activities for obtaining age-independent effective doses. Consequently, the corresponding weight-dependent effective dose coefficients were rescaled according to the formalism of the EANM dosage card, to determine the radiopharmaceutical class of 68Ga-labeled peptides (“multiples”), and to calculate the baseline activities based on the biokinetics of these compounds and an upper limit of the administered activity of 185 MBq for an adult. Analogous to 18F-fluoride, a minimum activity of 14 MBq is recommended. As a result, for those pediatric nuclear medicine applications involving 68Ga-labeled peptides, new values for the EANM dosage card were proposed and implemented based on the results derived in this work. Overall, despite the low additional radiation-related cancer risk, all efforts should be undertaken to optimize administered activities in children and adolescents for obtaining sufficient diagnostic information with minimal associated radiation risk. N2 - Im Jahr 2006 wurden weltweit 0,18 Mio. nuklearmedizinische Diagnostikuntersuchungen bei Kindern durchgeführt. Für die meisten Radiopharmazeutika fehlen jedoch Daten zur Biokinetik und damit zur Dosimetrie oder diese wurden nicht öffentlich zugänglich gemacht. Daher basieren die meisten der heute vorgestellten Dosimetriedaten für Diagnostika bei Kindern und Jugendlichen auf den biokinetischen Daten von Erwachsenen. Selbst für eine der häufigsten nuklearmedizinischen Untersuchungen für diese Patientengruppe, die Nierenszintigraphie mit 99mTc-MAG3 für Bestimmung der Nierenfunktion, wurden Daten zur Biokinetik bisher nur für vier Kinder unterschiedlichen Alters erhoben. Insbesondere Nierenuntersuchungen gehören zu den häufigsten Untersuchungen bei Säuglingen und Kleinkindern. Aufgrund des jungen Alters kann diese Patientengruppe als Hochrisikogruppe mit einer höheren Wahrscheinlichkeit für das Eintreten stochastischer Strahlenwirkungen im Vergleich zu Erwachsenen eingestuft werden. Da es in dieser Patientengruppe nur begrenzte Daten zur Biokinetik und Dosimetrie gibt, ist das Ziel dieser Arbeit, die Dosimetrie und das damit verbundene Strahlenrisiko für eine größere Anzahl von Kleinkindern, die sich 99mTc-MAG3-Nierenscans unterziehen, auf der Grundlage einer retrospektiven Analyse bestehender Patientendaten neu zu bewerten. Die Daten wurden retrospektiv von 34 Patienten unter 20 Monaten mit normaler (20 Patienten) und eingeschränkter Nierenfunktion (14 Patienten) erhoben, bei denen 99mTc-MAG3-Scans durchgeführt wurden. Die patientenspezifische Organaktivität wurde basierend auf einer retrospektiven Kalibrierung abgeschätzt. Diese Kalibrierung basiert auf einem Satz von zwei 3D-gedruckten Säuglingsnieren, die mit bekannten Aktivitäten gefüllt wurden. Beide Phantome wurden an verschiedenen Positionen entlang der anteroposterioren Achse innerhalb eines Wasserphantoms gescannt und lieferten tiefen- und größenabhängige Schwächungskorrekturfaktoren für die planare Bildgebung. Die Zeit-Aktivitäts-Kurven wurden bestimmt, indem für jeden Patienten Nieren-, Blasen- und Ganzkörperregionen eingezeichnet und anschließend der entsprechende Kalibrierfaktor für die Umwandlung der Zählraten in Aktivität angewendet wurde. Patientenspezifische zeitintegrierte Aktivitätskoeffizienten wurden durch Integration der organspezifischen Zeit-Aktivitätskurven ermittelt. Die Energie- und effektiven Dosiskoeffizienten für jeden Patienten wurden mit OLINDA/EXM für das bereitgestellte Neugeborenen- und 1-Jahres-Phantom ermittelt. Basierend auf diesen Werten für die Energiedosen wurde eine individuelle Abschätzung des Strahlenrisikos für jeden der 34 Patienten mit dem Radiation Risk Assessment Tool des National Cancer Institute durchgeführt. Die organspezifischen mittleren Energiedosiskoeffizienten der Patienten mit normaler Nierenfunktion lagen bei 0,04±0,03 mGy/MBq für die Nieren und 0,27±0,24 mGy/MBq für die Blase, was in einem mittleren effektiven Dosiskoeffizienten von 0,02±0,02 mSv/MBq resultiert. Basierend auf den Ergebnissen der Dosimetrie, zeigte die Auswertung des zusätzlichen Lebenszeitrisikos ("excess lifetime risk", ELR) für die Entwicklung von strahleninduziertem Krebs, dass die Gruppe der Neugeborenen ein ELR von 16,8 pro 100.000 Personen aufweist, was höher ist als das der Gruppe der 1-jährigen mit 14,7 pro 100.000 Personen. Bei den 14 Patienten mit abnormaler Nierenfunktion waren die Mittelwerte für die Koeffizienten der organspezifischen Energiedosen für die Patienten: 0,40±0,34 mGy/MBq für die Nieren; 0,46±0,37 mGy/MBq für die Blase. Der effektivendosiskoeffizienten (mSv/MBq) waren: 0,05±0,02 mSv/MBq. Der mittlere ELR (pro 100.000 Personen) für die Entstehung von Krebs durch die Strahlenexposition von Patienten mit abnormaler Nierenfunktion betrug 29,2±18,7 pro 100.000 Personen. Das mit der Strahlung verbundene stochastische Risiko steigt mit den Organdosen unter Berücksichtigung alters- und geschlechtsspezifischer Einflüsse. Im Allgemeinen ist das mit den 99mTc-MAG3-Scans verbundene lebenslange Strahlenrisiko im Vergleich zum allgemeinen Bevölkerungsrisiko für die Entstehung von Krebs sehr gering. Aufgrund der steigenden Nachfrage nach PET-Scans bei Kindern und Jugendlichen mit 68Ga-markierten Peptiden wurden zusätzlich publizierte Datensätze für diese Verbindungen analysiert, um Empfehlungen für zu verabreichende Aktivitäten bei Kindern und Jugendlichen abzuleiten. Die Dosisberechnungen dazu basierten auf dem Modell einer gewichtsunabhängigen effektiven Dosis, das von der EANM Pediatric Dosage Card für den Einsatz in der pädiatrischen Nuklearmedizin vorgeschlagen wurde. Ziel war es, Empfehlungen zu verabreichenden Aktivitäten so aufzuteilen, dass sich altersunabhängige effektive Dosen ergeben. Dazu wurden die entsprechenden gewichtsabhängigen effektiven Dosiskoeffizienten gemäß dem Formalismus der EANM-Dosierungsempfehlung neu berechnet, um die radiopharmazeutische Klasse der 68Ga-markierten Peptide ("Multiples") zu bestimmen und die Werte für Basisaktivität zu berechnen. Diese basierend auf den Biokinetiken dieser Verbindungen und einer Obergrenze der verabreichten Aktivität von 185 MBq für einen Erwachsenen. Analog zu 18F-Fluorid, wird eine Mindestaktivität von 14 MBq empfohlen. Darauf basierend wurden für die pädiatrischen nuklearmedizinischen Anwendungen mit 68Ga-markierten Peptiden neue Werte für die EANM-Dosierungsempfehlung vorgeschlagen. Insgesamt sollten, trotz des geringen zusätzlichen strahlenbedingten Krebsrisikos, alle Anstrengungen unternommen werden, um die verabreichten Aktivitäten bei Kindern und Jugendlichen zu optimieren, um ausreichende diagnostische Informationen bei minimalem zusätzlichem Strahlenrisiko zu erhalten. KW - Biokinetics KW - Absorbed Doses KW - Risk Assessment KW - Pediatric Patients KW - Dosimetry KW - Nuclear Medicine KW - Pediatric Nuclear Medicine KW - Diagnostic Imaging Exams KW - Radiation Protection KW - Administered Activities KW - Radiation-associated Cancer Risk KW - Ga-68-labelled Peptides KW - Tc-99m-MAG3 Scans Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-192640 ER - TY - THES A1 - Slotta, Anja Maria T1 - The Role of Protein Kinase D 1 in the regulation of murine adipose tissue function under physiological and pathophysiological conditions T1 - Die Bedeutung von Protein Kinase D 1 in der Funktion von murinem Fettgewebe unter physiologischen und pathophysiologischen Bedingungen N2 - Adipocytes are specialized cells found in vertebrates to ensure survival in terms of adaption to food deficit and abundance. However, their dysfunction accounts for the pathophysiology of metabolic diseases such as T2DM. Preliminary data generated by Mona Löffler suggested that PKD1 is involved in adipocyte function. Here, I show that PKD1 expression and activity is linked to lipid metabolism of murine adipocytes. PKD1 gene expression and activity was reduced in murine white adipose tissue upon fasting, a physiological condition which induces lipolysis. Isoproterenol-stimulated lipolysis in adipose tissue and 3T3-L1 adipocytes reduced PKD1 gene expression. Silencing ATGL in adipocytes inhibited isoproterenol-stimulated lipolysis, however, the β-adrenergic stimulation of ATGL-silenced adipocytes lowered PKD1 expression levels as well. Adipose tissue of obese mice exhibited high PKD1 RNA levels but paradoxically lower protein levels of phosphorylated PKD1-Ser916. However, HFD generated a second PKD1 protein product of low molecular weight in mouse adipose tissue. Furthermore, constitutively active PKD1 predominantly displayed nuclear localization in 3T3-L1 adipocytes containing many fat vacuoles. However, adipocytes overexpressing non-functional PKD1 contained fewer lipid droplets and PKD1-KD was distributed in cytoplasm. Most importantly, deficiency of PKD1 in mouse adipose tissue caused expression of genes involved in adaptive thermogenesis such as UCP-1 and thus generated brown-like phenotype adipocytes. Thus, PKD1 is implicated in adipose tissue function and presents an interesting target for therapeutic approaches in the prevention of obesity and associated diseases. N2 - Adipozyten sind spezialisierte Zellen der Wirbeltiere, die das Überleben durch Anpassung an Nahrungsmangel und Nahrungsüberfluss gewährleisten. Eine Dysfunktion von Adipozyten bedingt jedoch die Pathophysiologie von Stoffwechselerkrankungen wie dem T2DM. Vorläufige Ergebnisse von Mona Löfflers Versuchen zeigten, dass PKD1 in der Funktion von Adipozyten involviert ist. Innerhalb dieser Arbeit konnte dargestellt werden, dass die Expression und Aktivität von PKD1 in murinen Adipozyten an den Lipidmetabolismus gekoppelt ist. Beim Hungern von murinem weißen Fettgewebe, einem physiologischen Zustand, der Lipolyse induziert, war die Genexpression von PKD1 reduziert. Isoproterenol-stimulierte Lipolyse führte ebenfalls zu verminderter Expression von PKD1 in murinen weißen Fettgewebe und 3T3-L1 Adipozyten. In ATGL-silenced Adipozyten war die Isoproterenol-stimulierte Lipolyse zwar inhibiert, allerdings wurde die Genexpression von PKD1 durch die β-adrenerge Stimulation ebenfalls vermindert. Fettgewebe von adipösen Mäusen hingegen wiesen hohe PKD1 RNA Level sowie einen niedrigen Proteingehalt der phosphorylierten Form PKD1-Ser916 auf. Fettreiche Ernährung von Mäusen generierte in Fettgewebe jedoch ein weiteres Produkt von PKD1 mit niedrigem Molekulargewicht im Western Blot. Des Weiteren wurde dargestellt, dass konstitutiv aktives PKD1 in 3T3-L1 Adipozyten vorwiegend nuklear lokalisiert war und diese Adipozyten einen hohen Gehalt von Fettvakuolen aufwiesen. Adipozyten, die funktionsloses PKD1 exprimierten, enthielten wenige Lipidtropfen und PKD1-KD war im Cytoplasma verteilt. Vor allem zeigte diese Arbeit, dass die Deletion von PKD1 spezifisch in murinem Fettgewebe die Expression von Genen wie UCP-1 verursachte, die eine Rolle in adaptiver Thermogenese spielen, und dadurch einen brown-like Phänotypen generierte. Zusammenfassend ist PKD1 in die Funktionen von Adipozyten verwickelt und stellt ein attraktives Ziel für therapeutische Ansätze in der Prävention von Übergewicht und damit assoziierten Erkrankungen dar. KW - adipocyte KW - murine KW - pkd KW - Protein Kinase D KW - adipose KW - Protein Kinase D 1 KW - PKD1 Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-179112 ER - TY - THES A1 - Simon, Katja T1 - Identifying the role of Myb-MuvB in gene expression and proliferation of lung cancer cells T1 - Identifizierung der Rolle des Myb-MuvB in der Genexpression und der Proliferation von Lungenkrebszellen N2 - The evolutionary conserved Myb-MuvB (MMB) multiprotein complex is a transcriptional master regulator of mitotic gene expression. The MMB subunits B-MYB, FOXM1 as well as target genes of MMB are often overexpressed in different cancer types. Elevated expression of these genes correlates with an advanced tumor state and a poor prognosis for patients. Furthermore, it has been reported that pathways, which are involved in regulating the mitotic machinery are attractive for a potential treatment of cancers harbouring Ras mutations (Luo et al., 2009). This suggest that the MMB complex could be required for tumorigenesis by mediating overactivity of mitotic genes and that the MMB could be a useful target for lung cancer treatment. However, although MMB has been characterized biochemically, the contribution of MMB to tumorigenesis is largely unknown in particular in vivo. In this thesis, it was demonstrated that the MMB complex is required for lung tumorigenesis in vivo in a mouse model of non small cell lung cancer. Elevated levels of B-MYB, NUSAP1 or CENPF in advanced tumors as opposed to low levels of these proteins levels in grade 1 or 2 tumors support the possible contribution of MMB to lung tumorigenesis and the oncogenic potential of B-MYB.The tumor growth promoting function of B-MYB was illustrated by a lower fraction of KI-67 positive cells in vivo and a significantly high impairment in proliferation after loss of B-Myb in vitro. Defects in cytokinesis and an abnormal cell cycle profile after loss of B-Myb underscore the impact of B-MYB on proliferation of lung cancer cell lines. The incomplete recombination of B-Myb in murine lung tumors and in the tumor derived primary cell lines illustrates the selection pressure against the complete loss of B-Myb and further demonstrats that B-Myb is a tumor-essential gene. In the last part of this thesis, the contribution of MMB to the proliferation of human lung cancer cells was demonstrated by the RNAi-mediated depletion of B-Myb. Detection of elevated B-MYB levels in human adenocarcinoma and a reduced proliferation, cytokinesis defects and abnormal cell cycle profile after loss of B-MYB in human lung cancer cell lines underlines the potential of B-MYB to serve as a clinical marker. N2 - Der evolutionär konservierte Myb-MuvB (MMB) Multiproteinkomplex ist ein transkriptionaler Meisterregulator der mitotischen Genexpression. Die MMB Untereinheiten B-MYB, FOXM1 und ihre Zielgene sind oft überexprimiert in verschiedenen Krebsarten. Die erhöhte Expression dieser Gene korreliert mit einem fortgeschrittenen Tumorstadium und einer schlechten Prognose für Patienten. Außerdem wurde berichtet, dass Signalwege, die die Mitosemaschinerie betreffen, reizvoll sind als mögliches Target für die Behandlung von Ras mutierten Krebsarten (Lao et al., 2009). Dies weißt auf darauf hin, dass der MMB Komplex an der Tumorentstehung beteiligt sein könnte, indem er die Überexpression mitotischer Gene fördert und damit ein geeignetes Target zur Behandlung von Krebs darstellen könnte. Obwohl der MMB biochemisch eingehend untersucht wurde, ist die Beteiligung des MMB an der Tumorgenese weitestgehend unbekannt speziell in vivo. In dieser Doktorarbeit wurde anhand eines NSCLC Mausmodells gezeigt, dass der MMB für die Lungentumorgenese in vivo erforderlich ist. Erhöhte Level von B-MYB, NUSAP1 oder CENPF in fortgeschrittenen Tumoren und im Gegenzug niedrigen Leveln in Grad 1 und 2 Tumoren unterstreichen die mögliche Beteiligung des MMB an der Lungentumorgenese und das onkogene Potential von B-MYB. Die Tumorwachstum-fördernde Funktion von B-MYB wurde veranschaulicht durch eine geringere Anzahl an KI-67 positiven Zellen in vivo und einem signifikant hohen Beeinträchtigung der Proliferation nach dem Verlust von B-MYB in vitro. Defekte in der Zytokinese und ein abnormales Zellzyklusprofil nach dem Verlust von B-MYB heben den Einfluss von B-Myb auf die Proliferation von Lungenkrebszelllinien hervor. Die unvollständige Rekombination von B-Myb in murinen Lungentumoren und den daraus hergestellten primären Tumorzelllinien veranschaulichen den Selektionsdruck auf den kompletten Verlust von B-MYB und zeigen zusätzlich, dass B-MYB ein für den Tumor essentielles Gen ist. Im letzten Teil der Doktorarbeit konnte die Beteiligung des MMB auf die Proliferation auf Lungenkrebszellen gezeigt werden durch den Verlust von B-MYB durch RNAi-Interferenz (RNAi). Detektion erhöhter B-Myb Level in humanen Adenokarzinomen und eine verminderte Proliferation, Zytokinese-Defekte und ein abnormales Zellzyklusprofil nach B-MYB Verlust in humanen Lungenkrebszelllinien unterstreichen das Potential von B-MYB als klinischer Marker zu fungieren. KW - Lungenkrebs KW - MMB KW - B-MYB KW - K-RAS KW - lung cancer KW - Mitose KW - Nicht-kleinzelliges Bronchialkarzinom Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-161814 ER - TY - JOUR A1 - Silwedel, Christine A1 - Speer, Christian P. A1 - Haarmann, Axel A1 - Fehrholz, Markus A1 - Claus, Heike A1 - Schlegel, Nicolas A1 - Glaser, Kirsten T1 - Ureaplasma species modulate cytokine and chemokine responses in human brain microvascular endothelial cells JF - International Journal of Molecular Science N2 - Ureaplasma species are common colonizers of the adult genitourinary tract and often considered as low-virulence commensals. Intraamniotic Ureaplasma infections, however, facilitate chorioamnionitis and preterm birth, and cases of Ureaplasma-induced neonatal sepsis, pneumonia, and meningitis raise a growing awareness of their clinical relevance. In vitro studies are scarce but demonstrate distinct Ureaplasma-driven impacts on immune mechanisms. The current study addressed cytokine and chemokine responses upon exposure of native or lipopolysaccharide (LPS) co-stimulated human brain microvascular endothelial cells (HBMEC) to Ureaplasma urealyticum or U. parvum, using qRT-PCR, RNA sequencing, multi-analyte immunoassay, and flow cytometry. Ureaplasma exposure in native HBMEC reduced monocyte chemoattractant protein (MCP)-3 mRNA expression (p < 0.01, vs. broth). In co-stimulated HBMEC, Ureaplasma spp. attenuated LPS-evoked mRNA responses for C-X-C chemokine ligand 5, MCP-1, and MCP-3 (p < 0.05, vs. LPS) and mitigated LPS-driven interleukin (IL)-1α protein secretion, as well as IL-8 mRNA and protein responses (p < 0.05). Furthermore, Ureaplasma isolates increased C-X-C chemokine receptor 4 mRNA levels in native and LPS co-stimulated HBMEC (p < 0.05). The presented results may imply immunomodulatory capacities of Ureaplasma spp. which may ultimately promote chronic colonization and long-term neuroinflammation. KW - Ureaplasma urealyticum KW - Ureaplasma parvum KW - neuroinflammation KW - meningitis KW - blood–brain barrier KW - HBMEC Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-201848 SN - 1422-0067 VL - 20 IS - 14 ER - TY - JOUR A1 - Silwedel, Christine A1 - Haarmann, Axel A1 - Fehrholz, Markus A1 - Claus, Heike A1 - Speer, Christian P. A1 - Glaser, Kirsten T1 - More than just inflammation: Ureaplasma species induce apoptosis in human brain microvascular endothelial cells JF - Journal of Neuroinflammation N2 - Background Ureaplasma species (spp.) are commonly regarded as low-virulent commensals but may cause invasive diseases in immunocompromised adults and in neonates, including neonatal meningitis. The interactions of Ureaplasma spp. with host defense mechanisms are poorly understood. This study addressed Ureaplasma-driven cell death, concentrating on apoptosis as well as inflammatory cell death. Methods Human brain microvascular endothelial cells (HBMEC) were exposed to Ureaplasma (U.) urealyticum serovar 8 (Uu8) and U. parvum serovar 3 (Up3). Resulting numbers of dead cells as well as mRNA levels and enzyme activity of key agents in programmed cell death were assessed by flow cytometry, RNA sequencing, and qRT-PCR, respectively. xCELLigence data were used for real-time monitoring of changes in cell adhesion properties. Results Both Ureaplasma isolates induced cell death (p < 0.05, vs. broth). Furthermore, Ureaplasma spp. enhanced mRNA levels for genes in apoptosis, including caspase 3 (Up3 p < 0.05, vs. broth), caspase 7 (p < 0.01), and caspase 9 (Up3 p < 0.01). Caspase 3 activity was increased upon Uu8 exposure (p < 0.01). Vice versa, Ureaplasma isolates downregulated mRNA levels for proteins involved in inflammatory cell death, namely caspase 1 (Uu8 p < 0.01, Up3 p < 0.001), caspase 4 (Uu8 p < 0.05, Up3 p < 0.01), NOD-like receptor pyrin domain-containing 3 (Uu8 p < 0.05), and receptor-interacting protein kinase 3 (p < 0.05). Conclusions By inducing apoptosis in HBMEC as main constituents of the blood-brain barrier, Ureaplasma spp. may provoke barrier breakdown. Simultaneous suppression of inflammatory cell death may additionally attenuate host defense strategies. Ultimate consequence could be invasive and long-term CNS infections by Ureaplasma spp. KW - Ureaplasma urealyticum KW - Ureaplasma parvum KW - Neuroinflammation KW - Meningitis KW - Caspase KW - Apoptosis KW - HBMEC Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-200711 VL - 16 ER - TY - JOUR A1 - Sierra, Miguel A. A1 - Sánchez, David A1 - Gutierrez, Rafael A1 - Cuniberti, Gianaurelio A1 - Domínguez-Adame, Francisco A1 - Díaz, Elena T1 - Spin-polarized electron transmission in DNA-like systems JF - Biomolecules N2 - The helical distribution of the electronic density in chiral molecules, such as DNA and bacteriorhodopsin, has been suggested to induce a spin–orbit coupling interaction that may lead to the so-called chirality-induced spin selectivity (CISS) effect. Key ingredients for the theoretical modelling are, in this context, the helically shaped potential of the molecule and, concomitantly, a Rashba-like spin–orbit coupling due to the appearance of a magnetic field in the electron reference frame. Symmetries of these models clearly play a crucial role in explaining the observed effect, but a thorough analysis has been largely ignored in the literature. In this work, we present a study of these symmetries and how they can be exploited to enhance chiral-induced spin selectivity in helical molecular systems. KW - chirality-induced spin selectivity KW - helical molecules KW - spin transport KW - spin polarization KW - DNA electronic transport Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-193813 SN - 2218-273X VL - 10 IS - 1 ER - TY - JOUR A1 - Shah, Nirav R. A1 - Bulitta, Jürgen B. A1 - Kinzig, Martina A1 - Landersdorfer, Cornelia B. A1 - Jiao, Yuanyuan A1 - Sutaria, Dhruvitkumar S. A1 - Tao, Xun A1 - Höhl, Rainer A1 - Holzgrabe, Ulrike A1 - Kees, Frieder A1 - Stephan, Ulrich A1 - Sörgel, Fritz T1 - Novel population pharmacokinetic approach to explain the differences between cystic fibrosis patients and healthy volunteers via protein binding JF - Pharmaceutics N2 - The pharmacokinetics in patients with cystic fibrosis (CF) has long been thought to differ considerably from that in healthy volunteers. For highly protein bound β-lactams, profound pharmacokinetic differences were observed between comparatively morbid patients with CF and healthy volunteers. These differences could be explained by body weight and body composition for β-lactams with low protein binding. This study aimed to develop a novel population modeling approach to describe the pharmacokinetic differences between both subject groups by estimating protein binding. Eight patients with CF (lean body mass [LBM]: 39.8 ± 5.4kg) and six healthy volunteers (LBM: 53.1 ± 9.5kg) received 1027.5 mg cefotiam intravenously. Plasma concentrations and amounts in urine were simultaneously modelled. Unscaled total clearance and volume of distribution were 3% smaller in patients with CF compared to those in healthy volunteers. After allometric scaling by LBM to account for body size and composition, the remaining pharmacokinetic differences were explained by estimating the unbound fraction of cefotiam in plasma. The latter was fixed to 50% in male and estimated as 54.5% in female healthy volunteers as well as 56.3% in male and 74.4% in female patients with CF. This novel approach holds promise for characterizing the pharmacokinetics in special patient populations with altered protein binding. KW - cystic fibrosis patients KW - healthy volunteers KW - cefotiam KW - beta-lactam antibiotics KW - population pharmacokinetics KW - protein binding KW - allometric scaling KW - body size KW - body composition KW - S-ADAPT Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-196934 SN - 1999-4923 VL - 11 IS - 6 ER - TY - JOUR A1 - Sepahi, Ilnaz A1 - Faust, Ulrike A1 - Sturm, Marc A1 - Bosse, Kristin A1 - Kehrer, Martin A1 - Heinrich, Tilman A1 - Grundman-Hauser, Kathrin A1 - Bauer, Peter A1 - Ossowski, Stephan A1 - Susak, Hana A1 - Varon, Raymonda A1 - Schröck, Evelin A1 - Niederacher, Dieter A1 - Auber, Bernd A1 - Sutter, Christian A1 - Arnold, Norbert A1 - Hahnen, Eric A1 - Dworniczak, Bernd A1 - Wang-Gorke, Shan A1 - Gehrig, Andrea A1 - Weber, Bernhard H. F. A1 - Engel, Christoph A1 - Lemke, Johannes R. A1 - Hartkopf, Andreas A1 - Huu Phuc, Nguyen A1 - Riess, Olaf A1 - Schroeder, Christopher T1 - Investigating the effects of additional truncating variants in DNA-repair genes on breast cancer risk in BRCA1-positive women JF - BMC Cancer N2 - Background Inherited pathogenic variants in BRCA1 and BRCA2 are the most common causes of hereditary breast and ovarian cancer (HBOC). The risk of developing breast cancer by age 80 in women carrying a BRCA1 pathogenic variant is 72%. The lifetime risk varies between families and even within affected individuals of the same family. The cause of this variability is largely unknown, but it is hypothesized that additional genetic factors contribute to differences in age at onset (AAO). Here we investigated whether truncating and rare missense variants in genes of different DNA-repair pathways contribute to this phenomenon. Methods We used extreme phenotype sampling to recruit 133 BRCA1-positive patients with either early breast cancer onset, below 35 (early AAO cohort) or cancer-free by age 60 (controls). Next Generation Sequencing (NGS) was used to screen for variants in 311 genes involved in different DNA-repair pathways. Results Patients with an early AAO (73 women) had developed breast cancer at a median age of 27 years (interquartile range (IQR); 25.00–27.00 years). A total of 3703 variants were detected in all patients and 43 of those (1.2%) were truncating variants. The truncating variants were found in 26 women of the early AAO group (35.6%; 95%-CI 24.7 - 47.7%) compared to 16 women of controls (26.7%; 95%-CI 16.1 to 39.7%). When adjusted for environmental factors and family history, the odds ratio indicated an increased breast cancer risk for those carrying an additional truncating DNA-repair variant to BRCA1 mutation (OR: 3.1; 95%-CI 0.92 to 11.5; p-value = 0.07), although it did not reach the conventionally acceptable significance level of 0.05. Conclusions To our knowledge this is the first time that the combined effect of truncating variants in DNA-repair genes on AAO in patients with hereditary breast cancer is investigated. Our results indicate that co-occurring truncating variants might be associated with an earlier onset of breast cancer in BRCA1-positive patients. Larger cohorts are needed to confirm these results. KW - breast cancer KW - age at onset KW - DNA-repair genes KW - next-generation-sequencing KW - panel sequencing KW - extreme phenotypes KW - hereditary breast and ovarian cancer KW - BRCA1 KW - DNA-repair Y1 - 2019 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-237676 VL - 19 ER -