TY - THES A1 - Jenett, Arnim T1 - The Virtual Insect Brain Protocol : development and application of software for the standardization of neuroanatomy T1 - Das Virtual Insect Brain Protocol N2 - Since the fruit fly Drosophila melanogaster entered the laboratories as a model organism, new genetic, physiological, molecular and behavioral techniques for the functional analysis of the brain rapidly accumulated. Nowadays this concerted assault obtains its main thrust form Gal4 expression patterns that can be visualized and provide the means for manipulating -in unrestrained animals- groups of neurons of the brain. To take advantage of these patterns one needs to know their anatomy. This thesis describes the Virtual Insect Brain (VIB) protocol, a software package for the quantitative assessment, comparison, and presentation of neuroanatomical data. It is based on the 3D-reconstruction and visualization software Amira (Mercury Inc.). Its main part is a standardization procedure which aligns individual 3D images (series of virtual sections obtained by confocal microscopy) to a common coordinate system and computes average intensities for each voxel (volume pixel). The VIB protocol facilitates direct comparison of gene expression patterns and describes their interindividual variability. It provides volumetry of brain regions and helps to characterize the phenotypes of brain structure mutants. Using the VIB protocol does not require any programming skills since all operations are carried out at a (near to) self-explanatory graphical user interface. Although the VIB protocol has been developed for the standardization of Drosophila neuroanatomy, the program structure can be used for the standardization of other 3D structures as well. Standardizing brains and gene expression patterns is a new approach to biological shape and its variability. Using the VIB protocol consequently may help to integrate knowledge on the correlation of form and function of the insect brain. The VIB protocol provides a first set of tools supporting this endeavor in Drosophila. The software is freely available at http://www.neurofly.de. N2 - Seitdem die Taufliege Drosophila melanogaster als Modellorganismus Einzug in die Forschung erhalten hat, sammeln sich mehr und mehr genetische, physiologische und molekulare Techniken für die Funktionsanalyse des Gehirns an. Diese beruhen heutzutage meist auf Gal4 Expressionsmustern, die sichtbar gemacht werden können und eine gezielte Manipulierung von definierten Zellgruppen ermöglichen. Um Ergebnisse verschiedener Untersuchungen miteinander in Beziehung setzen zu können, muss man jedoch die typische Anatomie der zugrunde liegenden Expressionsmuster kennen. Diese Arbeit beschreibt das Virtual Insect Brain (VIB) Protokoll, eine Software für die Darstellung, die quantitative Einschätzung und den Vergleich von neuroanatomischen Daten, sowie einige exemplarische Anwendungen des VIB Protokolls. Die Software basiert auf der 3D-Rekonstruktions- und der Visualisierungs-Software Amira (Mercury Inc.). Sein Hauptbestandteil ist ein Normierungverfahren, das 3D-Bild-Stapel (Folgen virtueller Schnittbilder, erhalten durch konfokale Mikroskopie) auf ein gemeinsames Koordinatensystem abbildet und für jedes Voxel (dreidimensionaler Bildpunkt) die durchschnittliche Intensität berechnet. Das VIB Protokoll erleichtert dadurch den direkten Vergleich von Expressionsmustern und beschreibt ihre interindividuelle Variabilität. Es liefert volumetrische Messungen zu definierten Gehirnregionen und hilft, die durch Mutation entstehenden Veränderungen der Gehirnstruktur zu erkennen. Das Verwenden des VIB Protokolls erfordert keinerlei Programmierkenntnisse, da alle Vorgänge auf einer selbsterklärenden graphischen Benutzeroberfläche ausgeführt werden können. Obgleich das VIB Protokoll für die Normierung der Neuroanatomy von Taufliegen entwickelt worden ist, kann die Programmstruktur auch für die Normierung anderer 3D-Strukturen benutzt werden. Gehirne und Expressionsmuster zu standardisieren ist ein neuer Ansatz die Variabilität der Neuroanatomie zu hinterfragen. Bei konsequenter Verwendung kann das VIB Protokoll helfen Wissen über Form und Funktion des Insektengehirns zu miteinander zu vernetzen. Das VIB Protokoll liefert einen ersten Satz Werkzeuge, die diese Bemühung in der Taufliege ermöglichen. Die Software kann kostenfrei von http://www.neurofly.de herunter geladen werden. KW - Taufliege KW - Gehirn KW - Neuroanatomie KW - Software KW - Drosophila melanogaster KW - Standardgehirn KW - Neuroanatomie KW - VIB KW - standardization KW - software Y1 - 2007 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-22297 ER - TY - CHAP A1 - Schlosser, Daniel A1 - Jarschel, Michael A1 - Duelli, Michael A1 - Hoßfeld, Tobias A1 - Hoffmann, Klaus A1 - Hoffmann, Marco A1 - Morper, Hans Jochen A1 - Jurca, Dan A1 - Khan, Ashiq T1 - A Use Case Driven Approach to Network Virtualization N2 - In today's Internet, services are very different in their requirements on the underlying transport network. In the future, this diversity will increase and it will be more difficult to accommodate all services in a single network. A possible approach to cope with this diversity within future networks is the introduction of support for running isolated networks for different services on top of a single shared physical substrate. This would also enable easy network management and ensure an economically sound operation. End-customers will readily adopt this approach as it enables new and innovative services without being expensive. In order to arrive at a concept that enables this kind of network, it needs to be designed around and constantly checked against realistic use cases. In this contribution, we present three use cases for future networks. We describe functional blocks of a virtual network architecture, which are necessary to support these use cases within the network. Furthermore, we discuss the interfaces needed between the functional blocks and consider standardization issues that arise in order to achieve a global consistent control and management structure of virtual networks. KW - Virtualisierung KW - Datenkommunikationsnetz KW - Internet KW - Rechnernetz KW - Anwendungsfall KW - Netzvirtualisierung KW - Standardisierung KW - Use case KW - network virtualization KW - future Internet architecture KW - standardization Y1 - 2010 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-55611 N1 - Accepted at IEEE Kaleidoscope 2010 ER - TY - JOUR A1 - Eisele, Marion A1 - Blozik, Eva A1 - Störk, Stefan A1 - Träder, Jens-Martin A1 - Herrmann-Lingen, Christoph A1 - Scherer, Martin T1 - Recognition of depression and anxiety and their association with quality of life, hospitalization and mortality in primary care patients with heart failure - study protocol of a longitudinal observation study JF - BMC Family Practice N2 - Background: International disease management guidelines recommend the regular assessment of depression and anxiety in heart failure patients. Currently there is little data on the effect of screening for depression and anxiety on the quality of life and the prognosis of heart failure (HF). We will investigate the association between the recognition of current depression/anxiety by the general practitioner (GP) and the quality of life and the patients' prognosis. Methods/Design: In this multicenter, prospective, observational study 3,950 patients with HF are recruited by general practices in Germany. The patients fill out questionnaires at baseline and 12-month follow-up. At baseline the GPs are interviewed regarding the somatic and psychological comorbidities of their patients. During the follow-up assessment, data on hospitalization and mortality are provided by the general practice. Based on baseline data, the patients are allocated into three observation groups: HF patients with depression and/or anxiety recognized by their GP (P+/+), those with depression and/or anxiety not recognized (P+/-) and patients without depression and/or anxiety (P-/-). We will perform multivariate regression models to investigate the influence of the recognition of depression and/or anxiety on quality of life at 12 month follow-up, as well as its influences on the prognosis (hospital admission, mortality). Discussion: We will display the frequency of GP-acknowledged depression and anxiety and the frequency of installed therapeutic strategies. We will also describe the frequency of depression and anxiety missed by the GP and the resulting treatment gap. Effects of correctly acknowledged and missed depression/anxiety on outcome, also in comparison to the outcome of subjects without depression/anxiety will be addressed. In case results suggest a treatment gap of depression/anxiety in patients with HF, the results of this study will provide methodological advice for the efficient planning of further interventional research. KW - anxiety KW - depression KW - health care research KW - heart failure KW - prevalence KW - observational study KW - prognosis KW - quality of life KW - hospitalization KW - treatment KW - mortality KW - task force KW - health questionnaire KW - cardiovascular care KW - validity KW - scale KW - validation KW - outcomes KW - standardization KW - population Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-121881 SN - 1471-2296 VL - 14 IS - 180 ER - TY - JOUR A1 - Werner, Rudolf A. A1 - Bundschuh, Ralph A. A1 - Bundschuh, Lena A1 - Javadi, Mehrbod S. A1 - Higuchi, Takahiro A1 - Weich, Alexander A1 - Sheikhbahaei, Sara A1 - Pienta, Kenneth J. A1 - Buck, Andreas K. A1 - Pomper, Martin G. A1 - Gorin, Michael A. A1 - Lapa, Constantin A1 - Rowe, Steven P. T1 - MI-RADS: Molecular Imaging Reporting and Data Systems – A Generalizable Framework for Targeted Radiotracers with Theranostic Implications JF - Annals of Nuclear Medicine N2 - Both prostate-specific membrane antigen (PSMA)- and somatostatin receptor (SSTR)-targeted positron emission tomography (PET) imaging agents for staging and restaging of prostate carcinoma or neuroendocrine tumors, respectively, are seeing rapidly expanding use. In addition to diagnostic applications, both classes of radiotracers can be used to triage patients for theranostic endoradiotherapy. While interpreting PSMA- or SSTR-targeted PET/computed tomography (CT) scans, the reader has to be aware of certain pitfalls. Adding to the complexity of the interpretation of those imaging agents, both normal biodistribution, and also false-positive and -negative findings differ between PSMA- and SSTR-targeted PET radiotracers. Herein summarized under the umbrella term molecular imaging reporting and data systems (MI-RADS), two novel RADS classifications for PSMA- and SSTR-targeted PET imaging are described (PSMA- and SSTR-RADS). Both framework systems may contribute to increase the level of a reader’s confidence and to navigate the imaging interpreter through indeterminate lesions, so that appropriate workup for equivocal findings can be pursued. Notably, PSMA- and SSTR-RADS are structured in a reciprocal fashion, i.e. if the reader is familiar with one system, the other system can readily be applied as well. In the present review we will discuss the most common pitfalls on PSMA- and SSTR-targeted PET/CT, briefly introduce PSMA- and SSTR-RADS, and define a future role of the umbrella framework MI-RADS compared to other harmonization systems. KW - PET KW - Positronen-Emissions-Tomografie KW - prostate cancer KW - neuroendocrine tumor KW - prostate-specific membrane antigen (PSMA) KW - somatostatin receptor (SSTR) KW - positron emission tomography KW - theranostics KW - standardization KW - RADS KW - reporting and data systems KW - personalized medicine Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-166995 SN - 0914-7187 ER -