TY - JOUR A1 - Zürn, Michael A1 - Strack, Fritz T1 - When More Is Better – Consumption Priming Decreases Responders’ Rejections in the Ultimatum Game JF - Frontiers in Psychology N2 - During the past decades, economic theories of rational choice have been exposed to outcomes that were severe challenges to their claim of universal validity. For example, traditional theories cannot account for refusals to cooperate if cooperation would result in higher payoffs. A prominent illustration are responders’ rejections of positive but unequal payoffs in the Ultimatum Game. To accommodate this anomaly in a rational framework one needs to assume both a preference for higher payoffs and a preference for equal payoffs. The current set of studies shows that the relative weight of these preference components depends on external conditions and that consumption priming may decrease responders’ rejections of unequal payoffs. Specifically, we demonstrate that increasing the accessibility of consumption-related information accentuates the preference for higher payoffs. Furthermore, consumption priming increased responders’ reaction times for unequal payoffs which suggests an increased conflict between both preference components. While these results may also be integrated into existing social preference models, we try to identify some basic psychological processes underlying economic decision making. Going beyond the Ultimatum Game, we propose that a distinction between comparative and deductive evaluations may provide a more general framework to account for various anomalies in behavioral economics. KW - Ultimatum Game KW - comparison KW - consumption priming KW - evaluation KW - cognitive processes Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-189989 SN - 1664-1078 VL - 8 IS - 2226 ER - TY - JOUR A1 - Zopf, Kathrin A1 - Frey, Kathrin R. A1 - Kienitz, Tina A1 - Ventz, Manfred A1 - Bauer, Britta A1 - Quinkler, Marcus T1 - \(Bcl\)I polymorphism of the glucocorticoid receptor and adrenal crisis in primary adrenal insufficiency JF - Endocrine Connections N2 - Context: Patients with primary adrenal insufficiency (PAI) or congenital adrenal hyperplasia (CAH) are at a high risk of adrenal crisis (AC). Glucocorticoid sensitivity is at least partially genetically determined by polymorphisms of the glucocorticoid receptor (GR). Objectives: To determine if a number of intercurrent illnesses and AC are associated with the GR gene polymorphism \(Bcl\)I in patients with PAI and CAH. Design and patients: This prospective, longitudinal study over 37.7 ± 10.1 months included 47 PAI and 25 CAH patients. During the study period, intercurrent illness episodes and AC were documented. Results: The study period covered 223 patient years in which 21 AC occurred (9.4 AC/100 pat years). There were no significant differences between \(Bcl\)I polymorphisms (CC (n=29), CG (n=34) and GG (n=9)) regarding BMI, hydrocortisone equivalent daily dose and blood pressure. We did not find a difference in the number of intercurrent illnesses/patient year among \(Bcl\)I polymorphisms (CC (1.5±1.4/pat year), CG (1.2±1.2/pat year) and GG (1.6±2.2/pat year)). The occurrence of AC was not significantly different among the homozygous (GG) genotype (32.5 AC/100 pat years), the CC genotype (6.7 AC/100 pat years) and the CG genotype (4.9 AC/100 pat years). Concomitant hypothyroidism was the highest in the GG genotype group (5/9), compared to others (CC (11/29) and CG (11/34)). Conclusions: Although sample sizes were relatively small and results should be interpreted with caution, this study suggests that the GR gene polymorphism \(Bcl\)I may not be associated with the frequencies of intercurrent illnesses and AC. KW - medicine KW - adrenal crisis KW - adrenal insufficiency KW - cortisol KW - hydrocortisone KW - polyglandular autoimmune syndrome Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-173276 VL - 6 IS - 8 ER - TY - JOUR A1 - Zinner, Christoph A1 - Born, Dennis-Peter A1 - Sperlich, Billy T1 - Ischemic preconditioning does not alter performance in multidirectional high-intensity intermittent exercise JF - Frontiers in Physiology N2 - Purpose: Research dealing with ischemic preconditioning (IPC) has primarily focused on variables associated to endurance performance with little research about the acute responses of IPC on repeated multidirectional running sprint performance. Here we aimed to investigate the effects of IPC of the arms and the legs on repeated running sprint performance with changes-of-direction (COD) movements. Methods: Thirteen moderately-to-well-trained team-sport athletes (7 males; 6 females; age: 24 ± 2 years, size: 175 ± 8 cm, body mass: 67.9 ± 8.1 kg) performed 16 × 30 m all-out sprints (15 s rest) with multidirectional COD movements on a Speedcourt\(^{©}\) with IPC (3 × 5 min) of the legs (IPC\(_{leg}\); 240 mm Hg) or of the arms (remote IPC: IPC\(_{remote}\); 180–190 mm Hg) 45 min before the sprints and a control trial (CON; 20 mm Hg). Results: The mean (±SD) time for the 16 × 30 m multidirectional COD sprints was similar between IPC\(_{leg}\) (Mean t: 16.0 ± 1.8 s), IPC\(_{remote}\) (16.2 ± 1.7 s), and CON (16.0 ± 1.6 s; p = 0.50). No statistical differences in oxygen uptake (mean difference: 0%), heart rate (1.1%) nor muscle oxygen saturation of the vastus lateralis (4.7%) and biceps brachii (7.8%) between the three conditions were evident (all p > 0.05). Conclusions: IPC (3 × 5 min) of the legs (220 mm Hg) or arms (180–190 mm Hg; remote IPC) applied 45 min before 16 × 30 m repeated multidirectional running sprint exercise does not improve sprint performance, oxygen uptake, heart rate nor muscle oxygen saturation of the vastus lateralis muscle when compared to a control trial. KW - team sport KW - agility KW - change of direction KW - muscle oxygen saturation KW - near-infrared spectroscopy Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-159348 VL - 8 ER - TY - JOUR A1 - Zimmermann, Henriette A1 - Subota, Ines A1 - Batram, Christopher A1 - Kramer, Susanne A1 - Janzen, Christian J. A1 - Jones, Nicola G. A1 - Engstler, Markus T1 - A quorum sensing-independent path to stumpy development in Trypanosoma brucei JF - PLoS Pathogens N2 - For persistent infections of the mammalian host, African trypanosomes limit their population size by quorum sensing of the parasite-excreted stumpy induction factor (SIF), which induces development to the tsetse-infective stumpy stage. We found that besides this cell density-dependent mechanism, there exists a second path to the stumpy stage that is linked to antigenic variation, the main instrument of parasite virulence. The expression of a second variant surface glycoprotein (VSG) leads to transcriptional attenuation of the VSG expression site (ES) and immediate development to tsetse fly infective stumpy parasites. This path is independent of SIF and solely controlled by the transcriptional status of the ES. In pleomorphic trypanosomes varying degrees of ES-attenuation result in phenotypic plasticity. While full ES-attenuation causes irreversible stumpy development, milder attenuation may open a time window for rescuing an unsuccessful antigenic switch, a scenario that so far has not been considered as important for parasite survival. KW - Trypanosoma KW - hyperexpression techniques KW - parasitic cell cycles KW - cloning KW - cell cycle and cell division KW - cell differentiation KW - tetracyclines KW - parasitic diseases Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-158230 VL - 13 IS - 4 ER - TY - JOUR A1 - Ziegler, Sabrina A1 - Weiss, Esther A1 - Schmitt, Anna-Lena A1 - Schlegel, Jan A1 - Burgert, Anne A1 - Terpitz, Ulrich A1 - Sauer, Markus A1 - Moretta, Lorenzo A1 - Sivori, Simona A1 - Leonhardt, Ines A1 - Kurzai, Oliver A1 - Einsele, Hermann A1 - Loeffler, Juergen T1 - CD56 Is a Pathogen Recognition Receptor on Human Natural Killer Cells JF - Scientific Reports N2 - Aspergillus (A.) fumigatus is an opportunistic fungal mold inducing invasive aspergillosis (IA) in immunocompromised patients. Although antifungal activity of human natural killer (NK) cells was shown in previous studies, the underlying cellular mechanisms and pathogen recognition receptors (PRRs) are still unknown. Using flow cytometry we were able to show that the fluorescence positivity of the surface receptor CD56 significantly decreased upon fungal contact. To visualize the interaction site of NK cells and A. fumigatus we used SEM, CLSM and dSTORM techniques, which clearly demonstrated that NK cells directly interact with A. fumigatus via CD56 and that CD56 is re-organized and accumulated at this interaction site time-dependently. The inhibition of the cytoskeleton showed that the receptor re-organization was an active process dependent on actin re-arrangements. Furthermore, we could show that CD56 plays a role in the fungus mediated NK cell activation, since blocking of CD56 surface receptor reduced fungal mediated NK cell activation and reduced cytokine secretion. These results confirmed the direct interaction of NK cells and A. fumigatus, leading to the conclusion that CD56 is a pathogen recognition receptor. These findings give new insights into the functional role of CD56 in the pathogen recognition during the innate immune response. KW - pattern recognition receptors KW - fungal infection KW - Aspergillus fumigatus KW - natural killer cells Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-170637 VL - 7 IS - 6138 ER - TY - JOUR A1 - Zeller, Daniel A1 - Heidemeier, Anke A1 - Grigoleit, Götz Ulrich A1 - Müllges, Wolfgang T1 - Case report: subacute tetraplegia in an immunocompromised patient JF - BMC Neurology N2 - Background: Clinical reasoning in Neurology is based on general associations which help to deduce the site of the lesion. However, even “golden principles” may occasionally be deceptive. Here, we describe the case of subacute flaccid tetraparesis due to motor cortical lesions. To our knowledge, this is the first report to include an impressive illustration of nearly symmetric motor cortical involvement of encephalitis on brain MRI. Case presentation: A 51 year old immunocompromized man developed a high-grade pure motor flaccid tetraparesis over few days. Based on clinical presentation, critical illness polyneuromyopathy was suspected. However, brain MRI revealed symmetrical hyperintensities strictly limited to the subcortical precentral gyrus. An encephalitis, possibly due to CMV infection, turned out to be the most likely cause. Conclusion: While recognition of basic clinical patterns is indispensable in neurological reasoning, awareness of central conditions mimicking peripheral nervous disease may be crucial to detect unsuspected, potentially treatable conditions. KW - tetraparesis KW - motor cortex KW - CMV KW - encephalitis KW - case report Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-157576 VL - 17 IS - 31 ER - TY - JOUR A1 - Zapp, Angela Alexandra A1 - Fischer, Eva Caroline A1 - Deuschle, Michael T1 - The effect of agomelatine and melatonin on sleep-related eating: a case report JF - Journal of Medical Case Reports N2 - Background: Sleep-related eating may occur in the context of mental illness, sleep disorders, or psychopharmacological treatment. Frequently, sleep-related eating leads to severe weight gain and, so far, there are no treatment options for the condition. Case presentation: We report the case of a 54-year-old white woman with depression, panic disorder, and sleep apnea under treatment with various antidepressants who developed severe sleep-related eating. Her sleep-related eating completely vanished after addition of agomelatine, it reoccurred after cessation of agomelatine, and vanished again after her re-exposure to another melatonergic drug, extended melatonin. Conclusions: This case suggests that melatonergic drugs lead to relief from sleep-related eating, even when the condition occurs in the context of physical and mental disorders as well as psychopharmacological treatment. KW - sleep-related eating KW - agomelatine KW - melatonin KW - weight loss KW - parasomn Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-157805 VL - 11 IS - 275 ER - TY - THES A1 - Yazdani Rashvanlouei, Kourosh T1 - Developing a Framework for International Projects of ERP Implementation T1 - Entwicklung eines Rahmens für internationale Projekte der ERP-Implementierung N2 - Enterprise Systeme werden immer mehr von Bedeutung, was sie in die Mitte der Aufmerksamkeit und der Berücksichtigung durch Organisationen in verschiedensten Formen rückt – seien es Unternehmen oder Industrien von riesigen öffentlichen oder privaten Organisationen bis hin zu mittleren und kleinen Dienstleistungsunternehmen. Diese Systeme verbessern sich ständig, sowohl funktionell, als auch technologisch und sie sind unumgänglich für Unternehmen, um ihre Produktivität zu vergrößern und um in dem nationalen und globalen Wettbewerb mitzuhalten. Da lokale Softwarelösungen die Bedingungen, speziell von großen Betrieben, funktionell und technologisch nicht erfüllen konnten und da riesige globale Softwarehersteller, wie SAP, Oracle und Microsoft ihre Lösungen rapide verbessern und sie ihren Markt immer mehr über den Globus expandieren, nimmt die Nachfrage für diese globalen Marken und deren nahezu einwandfreien Softwarelösungen täglich zu. Die Zustimmung für internationale ERP Unternehmensberatungsanwendungen nimmt deswegen exponentiell zu, während die Forschung der beeinflussenden Faktoren und des Fachwissens wenig verbreitet ist. Deswegen ist es so dringlich, dieses Gebiet zu erforschen. Das schlussendliche fünf-in-fünf Framework dieser Studie sammelt zum ersten Mal in der Geschichte alle historisch erwähnten, kritischen Erfolgsfaktoren und Projektaktivitäten. Diese wurden in fünf Phasen unterteilt und nach den fünf Schwerpunkten der internationalen ERP Projektdurchführung kategorisiert. Dieses Framework bietet einen Überblick und bildet einen umfassenden Fahrplan für solche Projekte. N2 - The importance of enterprise systems is increasingly growing and they are in the center of attention and consideration by organizations in various types of business and industries from extra-large public or private organizations to small and medium-sized service sector business. These systems are continuously advancing functionally and technologically and are inevitable and ineluctable for the enterprises to maximize their productivity and integration in current competitive national and global business environments. Also, since local software solutions could not meet the requirements of especially large enterprises functionally and technically, and as giant global enterprise software producers like SAP, Oracle and Microsoft are improving their solutions rapidly and since they are expanding their market to more corners of the globe, demand for these globally branded low-defect software solutions is daily ascending. The agreements for international ERP implementation project consultancy are, therefore, exponentially increasing, while the research on the influencing factors and know-hows is scattered and rare, and thus, a timely urgency for this field of research is being felt. The final developed five-in-five framework of this study, for the first time, collects all mentioned-in-the-history critical success factors and project activities, while sequencing them in five phases and categorizing them in five focus areas for international ERP implementation projects. This framework provides a bird’s-eye view and draws a comprehensive roadmap or instruction for such projects. KW - ERP KW - International IT Projects KW - ERP Implementation KW - Framework Develpment KW - ERP CSF Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-154000 ER - TY - THES A1 - Würtemberger-Pietsch, Sabrina T1 - Anionic and Neutral Lewis-Base Adducts of Diboron(4) Compounds T1 - Anionische und Neutrale Lewis-Basen Addukte von Diboran(4)-Verbindungen N2 - Anionic Adducts Sp2-sp3 tetraalkoxy diboron compounds have gained attention due to the development of new, synthetically useful catalytic reactions either with or without transition-metals. Lewis-base adducts of the diboron(4) compounds were suggested as possible intermediates in Cu catalyzed borylation reactions some time ago. However, intermolecular adducts of tetraalkoxy diboron compounds have not been studied yet in great detail. In preliminary studies, we have synthesized a series of anionic sp2-sp3 adducts of B2pin2 with alkoxy-groups (L = [OMe]–, [OtBu]–), a phenoxy-group (L = [4-tBuC6H4O]–) and fluoride (L = [F]–, with [nBu4N]+ as the counter ion) as Lewis-bases. Neutral Adducts Since their isolation and characterization, applications of N-heterocyclic carbenes (NHCs) and related molecules, e.g., cyclic alkylaminocarbenes (CAACs) and acyclic diaminocarbenes (aDCs), have grown rapidly. Their use as ligands in homogeneous catalysis and directly in organocatalysis, including recently developed borylation reactions, is now well established. Recently, several examples of ring expansion reactions (RER) involving NHCs were reported to take place at elevated temperatures, involving Be, B, and Si. Furthermore, preliminary studies in the group of Marder et al. showed the presence of neutral sp2-sp3 diboron compounds with B2pin2 and the NHC Cy2Im. In this work, we focused on the synthesis and characterization of further neutral sp2-sp3 as well as sp3-sp3 diboron adducts with B2cat2 and B2neop2 and different NHCs. Whereas the mono-NHC adduct is stable for several hours at temperatures up to 60 °C, the bis-NHC adducts undergo thermally induced rearrangement to form the ring expanded products compound 26 and 27. B2neop2 is much more reactive than B2cat2 giving ring expanded product 29 at room temperature in quantitative yields, demonstrating that NHC ring expansion and B–B bond cleavage can be very facile processes. Whereas the mono-NHC adduct is stable for several hours at temperatures up to 60 °C, the bis-NHC adducts undergo thermally induced rearrangement to form the ring expanded products compound 26 and 27. B2neop2 is much more reactive than B2cat2 giving ring expanded product 29 at room temperature in quantitative yields, demonstrating that NHC ring expansion and B–B bond cleavage can be very facile processes. N2 - Im Rahmen der vorliegenden Arbeit wurde die Synthese und das Reaktionsverhalten Lewis-Säuren/Lewis-Basen-Addukte von Diboran(4)-Verbindungen als Lewis-Säuren untersucht. Als Lewis-Basen dienten zum einem das Fluorid-Ion, zum anderen N-Heterozyklische Carbene. Ein Ziel der vorliegenden Arbeit war somit die Synthese und Charakterisierung anionischer sp2-sp3-Diboran-Verbindungen des Typs [B2(OR)4F][NMe4] (OR2 = Pinakol, Catechol und Neopentyl), die auf ihre Eigenschaft als „Boryl-Übertragungsreagenz“ gegenüber Diazoniumsalzen überprüft wurden. Der zweite Teil der Arbeit untersucht die Reaktion von Diboranen (B2cat2 und B2neop2) mit gesättigten und ungesättigten N-Heterozyklischen Carbenen (NHCs). Die neutralen, einfach- und zweifach-substituierten NHC-Addukte des Typs B2(OR)4•NHC und B2(OR)4•(NHC)2 wurden anschließend auf ihre thermische Stabilität untersucht. Die Ergebnisse dieser Arbeit zeigen zum einem, dass anionische Addukte des Typs [B2(OR)4F][NMe4] 4, 7 und 9 als „Boryl-Übertragungsreagenzien“ eingesetzt werden können. Ferner lassen sich ausgehend von Diboran(4)-Verbindungen durch die Umsetzung mit N Heterozyklischen Carbenen die einfach- und zweifach-substituierten NHC-Addukte B2(OR)4•NHC und B2(OR)4•(NHC)2 synthetisieren. Diese sind zum Teil instabil gegenüber einer Ringerweiterungsreaktion unter Insertion einer Boryleinheit in die C–N-Bindung des Carbens. Untersuchungen an NHC-Addukten von Boranen BR3 und HB(OR)2 zeigen weiterhin, dass die Addukte Ph3B•NHC gegenüber solchen Ringerweiterungen stabil sind. Die Addukte HB(OR)2•NHC sind je nach eingesetztem Carben und Boran entweder stabil oder reagieren unter B–H-Bindungsaktivierung zur Ringerweiterung des Carbens. KW - Addukt KW - Diborane KW - carben KW - Lewis-Base Adducts KW - Diboron(4) Compounds KW - Ring Expansion Reaction Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-136321 ER - TY - JOUR A1 - Wyler, Emanuel A1 - Menegatti, Jennifer A1 - Franke, Vedran A1 - Kocks, Christine A1 - Boltengagen, Anastasiya A1 - Hennig, Thomas A1 - Theil, Kathrin A1 - Rutkowski, Andrzej A1 - Ferrai, Carmelo A1 - Baer, Laura A1 - Kermas, Lisa A1 - Friedel, Caroline A1 - Rajewsky, Nikolaus A1 - Akalin, Altuna A1 - Dölken, Lars A1 - Grässer, Friedrich A1 - Landthaler, Markus T1 - Widespread activation of antisense transcription of the host genome during herpes simplex virus 1 infection JF - Genome Biology N2 - Background Herpesviruses can infect a wide range of animal species. Herpes simplex virus 1 (HSV-1) is one of the eight herpesviruses that can infect humans and is prevalent worldwide. Herpesviruses have evolved multiple ways to adapt the infected cells to their needs, but knowledge about these transcriptional and post-transcriptional modifications is sparse. Results Here, we show that HSV-1 induces the expression of about 1000 antisense transcripts from the human host cell genome. A subset of these is also activated by the closely related varicella zoster virus. Antisense transcripts originate either at gene promoters or within the gene body, and they show different susceptibility to the inhibition of early and immediate early viral gene expression. Overexpression of the major viral transcription factor ICP4 is sufficient to turn on a subset of antisense transcripts. Histone marks around transcription start sites of HSV-1-induced and constitutively transcribed antisense transcripts are highly similar, indicating that the genetic loci are already poised to transcribe these novel RNAs. Furthermore, an antisense transcript overlapping with the BBC3 gene (also known as PUMA) transcriptionally silences this potent inducer of apoptosis in cis. Conclusions We show for the first time that a virus induces widespread antisense transcription of the host cell genome. We provide evidence that HSV-1 uses this to downregulate a strong inducer of apoptosis. Our findings open new perspectives on global and specific alterations of host cell transcription by viruses. KW - Virology KW - Herpes KW - Virus KW - Antisense KW - Transcription KW - IncRNA KW - ICP4 KW - BBC3 KW - NFKB Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-173381 VL - 18 ER - TY - JOUR A1 - Wurdack, Matthias A1 - Lundt, Nils A1 - Klaas, Martin A1 - Baumann, Vasilij A1 - Kavokin, Alexey V. A1 - Höfling, Sven A1 - Schneider, Christian T1 - Observation of hybrid Tamm-plasmon exciton-polaritons with GaAs quantum wells and a MoSe\(_{2}\) monolayer JF - Nature Communications N2 - Strong light matter coupling between excitons and microcavity photons, as described in the framework of cavity quantum electrodynamics, leads to the hybridization of light and matter excitations. The regime of collective strong coupling arises, when various excitations from different host media are strongly coupled to the same optical resonance. This leads to a well-controllable admixture of various matter components in three hybrid polariton modes. Here, we study a cavity device with four embedded GaAs quantum wells hosting excitons that are spectrally matched to the A-valley exciton resonance of a MoSe\(_{2}\) monolayer. The formation of hybrid polariton modes is evidenced in momentum resolved photoluminescence and reflectivity studies. We describe the energy and k-vector distribution of exciton-polaritons along the hybrid modes by a thermodynamic model, which yields a very good agreement with the experiment. KW - two-dimensional materials KW - microresonators KW - nanophotonics and plasmonics KW - cavity device KW - strong coupling Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-170480 VL - 8 IS - 259 ER - TY - JOUR A1 - Wu, Yu A1 - Pons, Valérie A1 - Goudet, Amélie A1 - Panigai, Laetitia A1 - Fischer, Annette A1 - Herweg, Jo-Ana A1 - Kali, Sabrina A1 - Davey, Robert A. A1 - Laporte, Jérôme A1 - Bouclier, Céline A1 - Yousfi, Rahima A1 - Aubenque, Céline A1 - Merer, Goulven A1 - Gobbo, Emilie A1 - Lopez, Roman A1 - Gillet, Cynthia A1 - Cojean, Sandrine A1 - Popoff, Michel R. A1 - Clayette, Pascal A1 - Le Grand, Roger A1 - Boulogne, Claire A1 - Tordo, Noël A1 - Lemichez, Emmanuel A1 - Loiseau, Philippe M. A1 - Rudel, Thomas A1 - Sauvaire, Didier A1 - Cintrat, Jean-Christophe A1 - Gillet, Daniel A1 - Barbier, Julien T1 - ABMA, a small molecule that inhibits intracellular toxins and pathogens by interfering with late endosomal compartments JF - Scientific Reports N2 - Intracellular pathogenic microorganisms and toxins exploit host cell mechanisms to enter, exert their deleterious effects as well as hijack host nutrition for their development. A potential approach to treat multiple pathogen infections and that should not induce drug resistance is the use of small molecules that target host components. We identifed the compound 1-adamantyl (5-bromo-2-methoxybenzyl) amine (ABMA) from a cell-based high throughput screening for its capacity to protect human cells and mice against ricin toxin without toxicity. This compound efciently protects cells against various toxins and pathogens including viruses, intracellular bacteria and parasite. ABMA provokes Rab7-positive late endosomal compartment accumulation in mammalian cells without affecting other organelles (early endosomes, lysosomes, the Golgi apparatus, the endoplasmic reticulum or the nucleus). As the mechanism of action of ABMA is restricted to host-endosomal compartments, it reduces cell infection by pathogens that depend on this pathway to invade cells. ABMA may represent a novel class of broad-spectrum compounds with therapeutic potential against diverse severe infectious diseases. KW - biology KW - antimicrobials KW - high-throughput screening KW - infectious diseases Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-173170 VL - 7 ER - TY - JOUR A1 - Wolter, Patrick A1 - Hanselmann, Steffen A1 - Pattschull, Grit A1 - Schruf, Eva A1 - Gaubatz, Stefan T1 - Central spindle proteins and mitotic kinesins are direct transcriptional targets of MuvB, B-MYB and FOXM1 in breast cancer cell lines and are potential targets for therapy JF - Oncotarget N2 - The MuvB multiprotein complex, together with B-MYB and FOXM1 (MMB-FOXM1), plays an essential role in cell cycle progression by regulating the transcription of genes required for mitosis and cytokinesis. In many tumors, B-MYB and FOXM1 are overexpressed as part of the proliferation signature. However, the transcriptional targets that are important for oncogenesis have not been identified. Given that mitotic kinesins are highly expressed in cancer cells and that selected kinesins have been reported as target genes of MMB-FOXM1, we sought to determine which mitotic kinesins are directly regulated by MMB-FOXM1. We demonstrate that six mitotic kinesins and two microtubule-associated non-motor proteins (MAPs) CEP55 and PRC1 are direct transcriptional targets of MuvB, B-MYB and FOXM1 in breast cancer cells. Suppression of KIF23 and PRC1 strongly suppressed proliferation of MDA-MB-231 cells. The set of MMB-FOXM1 regulated kinesins genes and 4 additional kinesins which we referred to as the mitotic kinesin signature (MKS) is linked to poor outcome in breast cancer patients. Thus, mitotic kinesins could be used as prognostic biomarker and could be potential therapeutic targets for the treatment of breast cancer. KW - breast cancer KW - kinesin KW - cell cycle KW - cytokinesis Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-171851 VL - 8 IS - 7 ER - TY - THES A1 - Wolf, Beat T1 - Reducing the complexity of OMICS data analysis T1 - Verringerung der Komplexität von OMICS Datenanalysen N2 - The field of genetics faces a lot of challenges and opportunities in both research and diagnostics due to the rise of next generation sequencing (NGS), a technology that allows to sequence DNA increasingly fast and cheap. NGS is not only used to analyze DNA, but also RNA, which is a very similar molecule also present in the cell, in both cases producing large amounts of data. The big amount of data raises both infrastructure and usability problems, as powerful computing infrastructures are required and there are many manual steps in the data analysis which are complicated to execute. Both of those problems limit the use of NGS in the clinic and research, by producing a bottleneck both computationally and in terms of manpower, as for many analyses geneticists lack the required computing skills. Over the course of this thesis we investigated how computer science can help to improve this situation to reduce the complexity of this type of analysis. We looked at how to make the analysis more accessible to increase the number of people that can perform OMICS data analysis (OMICS groups various genomics data-sources). To approach this problem, we developed a graphical NGS data analysis pipeline aimed at a diagnostics environment while still being useful in research in close collaboration with the Human Genetics Department at the University of Würzburg. The pipeline has been used in various research papers on covering subjects, including works with direct author participation in genomics, transcriptomics as well as epigenomics. To further validate the graphical pipeline, a user survey was carried out which confirmed that it lowers the complexity of OMICS data analysis. We also studied how the data analysis can be improved in terms of computing infrastructure by improving the performance of certain analysis steps. We did this both in terms of speed improvements on a single computer (with notably variant calling being faster by up to 18 times), as well as with distributed computing to better use an existing infrastructure. The improvements were integrated into the previously described graphical pipeline, which itself also was focused on low resource usage. As a major contribution and to help with future development of parallel and distributed applications, for the usage in genetics or otherwise, we also looked at how to make it easier to develop such applications. Based on the parallel object programming model (POP), we created a Java language extension called POP-Java, which allows for easy and transparent distribution of objects. Through this development, we brought the POP model to the cloud, Hadoop clusters and present a new collaborative distributed computing model called FriendComputing. The advances made in the different domains of this thesis have been published in various works specified in this document. N2 - Das Gebiet der Genetik steht vor vielen Herausforderungen, sowohl in der Forschung als auch Diagnostik, aufgrund des "next generation sequencing" (NGS), eine Technologie die DNA immer schneller und billiger sequenziert. NGS wird nicht nur verwendet um DNA zu analysieren sondern auch RNA, ein der DNA sehr ähnliches Molekül, wobei in beiden Fällen große Datenmengen zu erzeugt werden. Durch die große Menge an Daten entstehen Infrastruktur und Benutzbarkeitsprobleme, da leistungsstarke Computerinfrastrukturen erforderlich sind, und es viele manuelle Schritte in der Datenanalyse gibt die kompliziert auszuführen sind. Diese beiden Probleme begrenzen die Verwendung von NGS in der Klinik und Forschung, da es einen Engpass sowohl im Bereich der Rechnerleistung als auch beim Personal gibt, da für viele Analysen Genetikern die erforderlichen Computerkenntnisse fehlen. In dieser Arbeit haben wir untersucht wie die Informatik helfen kann diese Situation zu verbessern indem die Komplexität dieser Art von Analyse reduziert wird. Wir haben angeschaut, wie die Analyse zugänglicher gemacht werden kann um die Anzahl Personen zu erhöhen, die OMICS (OMICS gruppiert verschiedene Genetische Datenquellen) Datenanalysen durchführen können. In enger Zusammenarbeit mit dem Institut für Humangenetik der Universität Würzburg wurde eine graphische NGS Datenanalysen Pipeline erstellt um diese Frage zu erläutern. Die graphische Pipeline wurde für den Diagnostikbereich entwickelt ohne aber die Forschung aus dem Auge zu lassen. Darum warum die Pipeline in verschiedenen Forschungsgebieten verwendet, darunter mit direkter Autorenteilname Publikationen in der Genomik, Transkriptomik und Epigenomik, Die Pipeline wurde auch durch eine Benutzerumfrage validiert, welche bestätigt, dass unsere graphische Pipeline die Komplexität der OMICS Datenanalyse reduziert. Wir haben auch untersucht wie die Leistung der Datenanalyse verbessert werden kann, damit die nötige Infrastruktur zugänglicher wird. Das wurde sowohl durch das optimieren der verfügbaren Methoden (wo z.B. die Variantenanalyse bis zu 18 mal schneller wurde) als auch mit verteiltem Rechnen angegangen, um eine bestehende Infrastruktur besser zu verwenden. Die Verbesserungen wurden in der zuvor beschriebenen graphischen Pipeline integriert, wobei generell die geringe Ressourcenverbrauch ein Fokus war. Um die künftige Entwicklung von parallelen und verteilten Anwendung zu unterstützen, ob in der Genetik oder anderswo, haben wir geschaut, wie man es einfacher machen könnte solche Applikationen zu entwickeln. Dies führte zu einem wichtigen informatischen Result, in dem wir, basierend auf dem Model von „parallel object programming“ (POP), eine Erweiterung der Java-Sprache namens POP-Java entwickelt haben, die eine einfache und transparente Verteilung von Objekten ermöglicht. Durch diese Entwicklung brachten wir das POP-Modell in die Cloud, Hadoop-Cluster und präsentieren ein neues Model für ein verteiltes kollaboratives rechnen, FriendComputing genannt. Die verschiedenen veröffentlichten Teile dieser Dissertation werden speziel aufgelistet und diskutiert. KW - Bioinformatik KW - Humangenetik KW - OMICS KW - Distributed computing KW - User interfaces KW - Verteiltes Datenbanksystem Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-153687 ER - TY - JOUR A1 - Wohlgemuth, Matthias A1 - Miyazaki, Mitsuhiko A1 - Tsukada, Kohei A1 - Weiler, Martin A1 - Dopfer, Otto A1 - Fujii, Masaaki A1 - Mitrić, Roland T1 - Deciphering environment effects in peptide bond solvation dynamics by experiment and theory JF - Physical Chemistry Chemical Physics N2 - Most proteins work in aqueous solution and the interaction with water strongly affects their structure and function. However, experimentally the motion of a specific single water molecule is difficult to trace by conventional methods, because they average over the heterogeneous solvation structure of bulk water surrounding the protein. Here, we provide a detailed atomistic picture of the water rearrangement dynamics around the –CONH– peptide linkage in the two model systems formanilide and acetanilide, which simply differ by the presence of a methyl group at the peptide linkage. The combination of picosecond pump–probe time-resolved infrared spectroscopy and molecular dynamics simulations demonstrates that the solvation dynamics at the molecular level is strongly influenced by this small structural difference. The effective timescales for solvent migration triggered by ionization are mainly controlled by the efficiency of the kinetic energy redistribution rather than the shape of the potential energy surface. This approach provides a fundamental understanding of protein hydration and may help to design functional molecules in solution with tailored properties. KW - infrared-spectra KW - hydration dynamics KW - trans-formanilide KW - water migration KW - protein hydration Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-159647 UR - http://pubs.rsc.org/en/content/articlelanding/2017/cp/c7cp03992a N1 - Accepted Version VL - 19 IS - 33 ER - TY - INPR A1 - Wohlgemuth, Matthias A1 - Miyazaki, Mitsuhiko A1 - Tsukada, Kohei A1 - Weiler, Martin A1 - Dopfer, Otto A1 - Fujii, Masaaki A1 - Mitrić, Roland T1 - Deciphering environment effects in peptide bond solvation dynamics by experiment and theory T2 - Physical Chemistry Chemical Physics N2 - Most proteins work in aqueous solution and the interaction with water strongly affects their structure and function. However, experimentally the motion of a specific single water molecule is difficult to trace by conventional methods, because they average over the heterogeneous solvation structure of bulk water surrounding the protein. Here, we provide a detailed atomistic picture of the water rearrangement dynamics around the –CONH– peptide linkage in the two model systems formanilide and acetanilide, which simply differ by the presence of a methyl group at the peptide linkage. The combination of picosecond pump–probe time-resolved infrared spectroscopy and molecular dynamics simulations demonstrates that the solvation dynamics at the molecular level is strongly influenced by this small structural difference. The effective timescales for solvent migration triggered by ionization are mainly controlled by the efficiency of the kinetic energy redistribution rather than the shape of the potential energy surface. This approach provides a fundamental understanding of protein hydration and may help to design functional molecules in solution with tailored properties. KW - hydration dynamics KW - trans-formanilide KW - water migration KW - protein hydration KW - infrared-spectra Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-159483 UR - http://pubs.rsc.org/en/content/articlelanding/2017/cp/c7cp03992a N1 - Submitted version ER - TY - JOUR A1 - Wohlfarth, Carolin A1 - Schmitteckert, Stefanie A1 - Härtle, Janina D. A1 - Houghton, Lesley A. A1 - Dweep, Harsh A1 - Fortea, Marina A1 - Assadi, Ghazaleh A1 - Braun, Alexander A1 - Mederer, Tanja A1 - Pöhner, Sarina A1 - Becker, Philip P. A1 - Fischer, Christine A1 - Granzow, Martin A1 - Mönnikes, Hubert A1 - Mayer, Emeran A. A1 - Sayuk, Gregory A1 - Boeckxstaens, Guy A1 - Wouters, Mira M. A1 - Simrén, Magnus A1 - Lindberg, Greger A1 - Ohlsson, Bodil A1 - Schmidt, Peter Thelin A1 - Dlugosz, Aldona A1 - Agreus, Lars A1 - Andreasson, Anna A1 - D'Amato, Mauro A1 - Burwinkel, Barbara A1 - Bermejo, Justo Lorenzo A1 - Röth, Ralph A1 - Lasitschka, Felix A1 - Vicario, Maria A1 - Metzger, Marco A1 - Santos, Javier A1 - Rappold, Gudrun A. A1 - Martinez, Cristina A1 - Niesler, Beate T1 - miR-16 and miR-103 impact 5-HT4 receptor signalling and correlate with symptom profile in irritable bowel syndrome JF - Scientific Reports N2 - Irritable bowel syndrome (IBS) is a gut-brain disorder involving alterations in intestinal sensitivity and motility. Serotonin 5-HT4 receptors are promising candidates in IBS pathophysiology since they regulate gut motor function and stool consistency, and targeted 5-HT4R selective drug intervention has been proven beneficial in subgroups of patients. We identified a single nucleotide polymorphism (SNP) (rs201253747) c.*61 T > C within the 5-HT4 receptor gene \(HTR4\) to be predominantly present in diarrhoea-IBS patients (IBS-D). It affects a binding site for the miR-16 family and miR-103/miR-107 within the isoforms \({HTR4b/i}\) and putatively impairs \(HTR4\) expression. Subsequent miRNA profiling revealed downregulation of miR-16 and miR-103 in the jejunum of IBS-D patients correlating with symptoms. \(In\) \(vitro\) assays confirmed expression regulation via three 3′UTR binding sites. The novel isoform \(HTR4b\_2\) lacking two of the three miRNA binding sites escapes miR-16/103/107 regulationin SNP carriers. We provide the first evidence that \(HTR4\) expression is fine-tuned by miRNAs, and that this regulation is impaired either by the SNP c.*61 T > C or bydiminished levels of miR-16 and miR-103 suggesting that \(HTR4\) might be involved in the development of IBS-D. KW - Medicine KW - Gene regulation KW - Irritable bowel syndrome Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-173478 VL - 7 ER - TY - THES A1 - Wirth, Robert T1 - Consequences of bending and breaking the rules T1 - Konsequenzen von Regelbrüchen N2 - Social life is organized around rules and norms. The present experiments investigate the cognitive architecture of rule violations. To do so, a setting with arbitrary rules that had to be followed or broken was developed, and breaking these rules did not have any negative consequences. Removed from any social influences that might further encourage or hinder the rule breaker, results suggest that simply labeling a behavior as a rule violation comes with specific costs: They are more difficult to plan and come with specific behavioral markers during execution. In essence, rule violations resemble rule negations, but they also trigger additional processes. The question of what makes rule violations more difficult than rule inversions is the major focus of the remaining experiments. These experiments revealed negative affective consequences of rule violation and rule inversions alike, while rule violations additionally prime authority-related concepts, thus sensitizing towards authority related stimuli. Next, the question how these burdens of non-conformity can be mitigated was investigated, and the influence of having executed the behavior in question frequently and recently was tested in both negations and rule violations. The burdens of non-conformity can best be reduced by a combination of having violated/negated a rule very frequently and very recently. Transfer from another task, however, could not be identified. To conclude, a model that accounts for the data that is currently presented is proposed. As a variant of a task switching model, it describes the cognitive processes that were investigated and highlights unique processing steps that rule violations seem to require. N2 - Soziales Miteinander ist durch Regeln und Normen organisiert. Die hier beschriebenen Experimente untersuchen die kognitive Architektur von absichtsvollen Regelverstößen. Dazu wurde ein Setting entwickelt, in dem Regeln befolgt oder gebrochen werden mussten, und das Brechen dieser Regeln keine negativen Konsequenzen nach sich zog. Selbst ohne soziale Unterstützung, die das Brechen von Regeln leichter oder schwerer machen könnte, fanden wir, dass allein das Bezeichnen eines Verhaltens als Regelverletzung spezifische Kosten erzeugte: Die Planung dieses Verhaltens ist deutlich erschwert, und die Ausführung zeigt spezifische Verhaltensmuster. Regelverletzungen ähneln hierbei im weitesten Sinne Negationen, aber beinhalten zusätzliche Komponenten. Die Frage wie genau sich die kognitive Kontrolle regelwidriger Verhaltensweisen von der Verarbeitung von Negationen unterscheidet, steht im Zentrum der vorliegenden Arbeit. Die folgenden Experimente zeigen darüber hinaus neben negativen affektiven Konsequenzen, die sowohl Regelbrüche als auch Negationen vorweisen, insbesondere eine direkte Bahnung autoritätsbezogener Konzepte, die eine spezifische Begleiterscheinung absichtsvoller Regelverstöße darstellt. Als nächstes wurde getestet, wie die kognitiven Kosten von Regelverletzungen durch kürzliche oder häufige Ausführung gemindert werden können. Hier zeigte sich, dass die Kombination aus beiden Faktoren die größte Reduktion kognitiver Kosten des Regelverstoßes erbrachte. Ein Transfer von kognitiver Kontrolle von einer anderen Aufgabe konnte jedoch nicht beobachtet werden. Ein Modell, das die hier dargestellten empirischen Ergebnisse vereint, wird abschließend diskutiert. Als Variation eines Modells zum Aufgabenwechsel erklärt es die kognitiven Prozesse, die einer Regelverletzung unterliegen und zeigt Verarbeitungsschritte auf, die für Regelverletzungen spezifisch sind KW - rule violations KW - Soziale Norm KW - Regelverstoß Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-155075 ER - TY - THES A1 - Will, Sebastian T1 - Development of a presence model for driving simulators based on speed perception in a motorcycle riding simulator T1 - Entwicklung eines Präsenzmodells für Fahrsimulatoren basierend auf der Geschwindigkeitswahrnehmung in einem Motorradfahrsimulator N2 - Driving simulators are powerful research tools. Countless simulator studies have contributed to traffic safety over the last decades. Constant improvements in simulator technology call for a measureable scale to assess driving simulators with regard to their utility in human factors research. A promising psychological construct to do so is presence. It is commonly defined as the feeling of being located in a remote or virtual environment that seems to be real. Another aspect of presence describes the ability to act there successfully. The main aim of this thesis is to develop a presence model dedicated to the application in driving simulators. Established models have been combined and extended in order to gain a comprehensive model of presence that allows understanding its emergence and deriving recommendations on how to design or improve driving simulators. The five studies presented in this thesis investigate specific postulated model components and their interactions. All studies deal with motorcycling or a motorcycle riding simulator as exemplary field of application. The first study used a speed estimation task to investigate the contribution of different sensory cues to presence. While visualization plays a particularly important role, further improvements could be achieved by adding more consistent sensory stimuli to the virtual environment. Auditory, proprioceptive and vestibular cues have been subject to investigation. In the second study, the speed production method was applied. It confirmed the positive contribution of action to presence as predicted by psychocybernetic models. The third study dealt with the effect of training on presence. Hence, no positive effect was observed. The fourth study aimed at replicating previous findings on sensory fidelity and diversity in a more complex riding situation than only longitudinal vehicle control. The riders had to cross an unexpectedly appearing deep pit with the virtual motorcycle. The contribution of more consistent sensory stimulation on presence was successfully shown in this scenario, too. The final study was a real riding experiment that delivered reference values for the speed estimation capabilities of motorcycle riders. Besides higher variations in the simulator data, the general speed estimation performance was on a comparable level. Different measures, such as subjective ratings, behavioral responses, performance, and physiological reactions, have been applied as presence indicators. These studies’ findings deliver evidence for the meaningful application of the proposed presence model in driving simulator settings. The results suggest that presence can be interpreted as a quality measure for perception in virtual environments. In line with psychocybernetic models, taking action, which is seen as controlling perception, enhances this quality even further. Describing the psychological construct of presence in a theoretical framework that takes the diversity of perception and action in driving simulator settings into account closes a gap in traffic psychological research. N2 - Fahrsimulatoren sind leistungsfähige Forschungsinstrumente. Seit einigen Jahrzehnten konnte mit unzähligen Simulatorstudien zur Verkehrssicherheit beigetragen werden. Stetige Weiterentwicklungen der Simulatortechnologie machen einen Maßstab erforderlich, der es erlaubt, Fahrsimulatoren hinsichtlich ihrer Nützlichkeit für verkehrspsychologische Fragestellungen zu bewerten. Ein vielversprechendes in der Psychologie verwendetes Konstrukt ist Präsenz. Für gewöhnlich wird Präsenz als das Gefühl definiert, sich in einer entfernten bzw. virtuellen Umwelt zu befinden, die als real wahrgenommen wird. Ein weiterer Aspekt von Präsenz beschreibt die Fähigkeit in dieser Welt erfolgreich zu handeln. Das Ziel der vorliegenden Arbeit ist es, ein Präsenzmodell für die Anwendung im Fahrsimulatorbereich zu entwickeln. Dafür werden bereits etablierte Präsenzmodelle aufgegriffen, kombiniert und um bestimmte Komponenten erweitert. Dies zielt darauf ab ein umfassendes Präsenzmodell zu etablieren, welches einerseits einen Erklärungsansatz zur Entstehung von Präsenz liefert und andererseits erlaubt, Gestaltungsempfehlungen für Fahrsimulatoren abzuleiten. Die fünf Experimente dieser Arbeit untersuchen spezifische Modellkomponenten und deren Zusammenspiel. Alle Studien befassen sich mit dem Motorradfahren bzw. einem Motorradfahrsimulator als exemplarisches Anwendungsfeld. Die erste Studie verwendete ein Schätzverfahren für Geschwindigkeiten, um den Beitrag verschiedener Sinnesreize zu Präsenz zu untersuchen. Während der Visualisierung eine besondere Rolle zukommt, konnte die Präsenz durch die Hinzunahme weiterer sensorischer Stimuli in der virtuellen Welt noch gesteigert werden. Dabei wurden auditive, propriozeptive und vestibuläre Reize betrachtet. In der zweiten Studie wurde die Geschwindigkeitswahrnehmung mit Hilfe des Herstellungsverfahrens untersucht. Wie durch psychokybernetische Modelle vorhergesagt, hat sich die positive Auswirkung aktiven Handelns in der virtuellen Welt auf Präsenz bestätigt. Die dritte Studie befasste sich mit den Auswirkungen von Training auf Präsenz. Hier konnte jedoch kein positiver Zusammenhang festgestellt werden. Die vierte Studie zielte darauf ab, im Vorfeld gewonnene Erkenntnisse zur Vielfalt sensorischer Reize zu replizieren. Anstelle reiner Fahrzeuglängsregulation galt es, eine komplexere Fahrsituation zu bewältigen. Die Probanden mussten dabei mit ihrem virtuellen Motorrad einen unerwartet auftretenden tiefen Graben durchqueren. Der Beitrag vielfältiger sensorischer Stimulation auf Präsenz konnte auch in diesem Szenario erfolgreich gezeigt werden. Bei der letzten Studie handelte es sich um eine Realfahruntersuchung, die Referenzwerte zur Einordnung der Geschwindigkeitswahrnehmung im Motorradfahrsimulator lieferte. Außer höheren Schwankungen der Schätzwerte im Fahrsimulator bewegte sich die Güte der Schätzungen im Mittel auf einem vergleichbaren Niveau. Zur Messung von Präsenz wurden Befragungsdaten, Verhaltensmaße, Leistung und physiologische Reaktionen als Indikatoren herangezogen. Die Ergebnisse der Studien belegen die sinnvolle Anwendbarkeit des vorgeschlagenen Präsenzmodells in der Fahrsimulation. Darüber hinaus zeigt sich, dass Präsenz als ein Gütemaß für Wahrnehmung in virtuellen Welten interpretiert werden kann. Psychokybernetischen Modellen folgend kann diese Qualität durch Handeln, welches als Kontrolle der Wahrnehmung gesehen wird, noch weiter gesteigert werden. Durch die Integration des psychologischen Präsenzkonstrukts in ein Rahmenmodell, welches der Vielfalt von Wahrnehmung und Handlung in Fahrsimulatoren Rechnung trägt, konnte eine Lücke in der verkehrspsychologischen Forschung geschlossen werden. KW - Fahrsimulator KW - Geschwindigkeitswahrnehmung KW - presence KW - motorcycle simulator KW - driving simulator KW - speed perception KW - Präsenzerleben KW - Immersion KW - Telepräsenz Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-149748 ER - TY - JOUR A1 - Wiegering, Armin A1 - Riegel, Johannes A1 - Wagner, Johanna A1 - Kunzmann, Volker A1 - Baur, Johannes A1 - Walles, Thorsten A1 - Dietz, Ulrich A1 - Loeb, Stefan A1 - Germer, Christoph-Thomas A1 - Steger, Ulrich A1 - Klein, Ingo T1 - The impact of pulmonary metastasectomy in patients with previously resected colorectal cancer liver metastases JF - PLoS ONE N2 - Background 40–50% of patients with colorectal cancer (CRC) will develop liver metastases (CRLM) during the course of the disease. One third of these patients will additionally develop pulmonary metastases. Methods 137 consecutive patients with CRLM, were analyzed regarding survival data, clinical, histological data and treatment. Results were stratified according to the occurrence of pulmonary metastases and metastases resection. Results 39% of all patients with liver resection due to CRLM developed additional lung metastases. 44% of these patients underwent subsequent pulmonary resection. Patients undergoing pulmonary metastasectomy showed a significantly better five-year survival compared to patients not qualified for curative resection (5-year survival 71.2% vs. 28.0%; p = 0.001). Interestingly, the 5-year survival of these patients was even superior to all patients with CRLM, who did not develop pulmonary metastases (77.5% vs. 63.5%; p = 0.015). Patients, whose pulmonary metastases were not resected, were more likely to redevelop liver metastases (50.0% vs 78.6%; p = 0.034). However, the rate of distant metastases did not differ between both groups (54.5 vs.53.6; p = 0.945). Conclusion The occurrence of colorectal lung metastases after curative liver resection does not impact patient survival if pulmonary metastasectomy is feasible. Those patients clearly benefit from repeated resections of the liver and the lung metastases. KW - hepatic resection KW - surgical resection KW - lung resection KW - curative resection KW - metastasis KW - colorectal cancer KW - cancer treatment KW - surgical oncology Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-158036 VL - 12 IS - 3 ER - TY - JOUR A1 - Wiegering, Armin A1 - Matthes, Niels A1 - Mühling, Bettina A1 - Koospal, Monika A1 - Quenzer, Anne A1 - Peter, Stephanie A1 - Germer, Christoph-Thomas A1 - Linnebacher, Michael A1 - Otto, Christoph T1 - Reactivating p53 and Inducing Tumor Apoptosis (RITA) Enhances the Response of RITA-Sensitive Colorectal Cancer Cells to Chemotherapeutic Agents 5-Fluorouracil and Oxaliplatin JF - Neoplasia N2 - Colorectal carcinoma (CRC) is the most common cancer of the gastrointestinal tract with frequently dysregulated intracellular signaling pathways, including p53 signaling. The mainstay of chemotherapy treatment of CRC is 5-fluorouracil (5FU) and oxaliplatin. The two anticancer drugs mediate their therapeutic effect via DNA damage-triggered signaling. The small molecule reactivating p53 and inducing tumor apoptosis (RITA) is described as an activator of wild-type and reactivator of mutant p53 function, resulting in elevated levels of p53 protein, cell growth arrest, and cell death. Additionally, it has been shown that RITA can induce DNA damage signaling. It is expected that the therapeutic benefits of 5FU and oxaliplatin can be increased by enhancing DNA damage signaling pathways. Therefore, we highlighted the antiproliferative response of RITA alone and in combination with 5FU or oxaliplatin in human CRC cells. A panel of long-term established CRC cell lines (n = 9) including p53 wild-type, p53 mutant, and p53 null and primary patient-derived, low-passage cell lines (n = 5) with different p53 protein status were used for this study. A substantial number of CRC cells with pronounced sensitivity to RITA (IC\(_{50}\)< 3.0 μmol/l) were identified within established (4/9) and primary patient-derived (2/5) CRC cell lines harboring wild-type or mutant p53 protein. Sensitivity to RITA appeared independent of p53 status and was associated with an increase in antiproliferative response to 5FU and oxaliplatin, a transcriptional increase of p53 targets p21 and NOXA, and a decrease in MYC mRNA. The effect of RITA as an inducer of DNA damage was shown by a strong elevation of phosphorylated histone variant H2A.X, which was restricted to RITA-sensitive cells. Our data underline the primary effect of RITA, inducing DNA damage, and demonstrate the differential antiproliferative effect of RITA to CRC cells independent of p53 protein status. We found a substantial number of RITA-sensitive CRC cells within both panels of established CRC cell lines and primary patient-derived CRC cell lines (6/14) that provide a rationale for combining RITA with 5FU or oxaliplatin to enhance the antiproliferative response to both chemotherapeutic agents. KW - colorectal carcinoma KW - reactivating p53 and inducing tumor apoptosis (RITA) KW - chemotherapy KW - 5-fluorouracil KW - oxaliplatin Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-171067 VL - 19 IS - 4 ER - TY - JOUR A1 - Westermann, Alexander J. A1 - Barquist, Lars A1 - Vogel, Jörg T1 - Resolving host-pathogen interactions by dual RNA-seq JF - PLoS Pathogens N2 - The transcriptome is a powerful proxy for the physiological state of a cell, healthy or diseased. As a result, transcriptome analysis has become a key tool in understanding the molecular changes that accompany bacterial infections of eukaryotic cells. Until recently, such transcriptomic studies have been technically limited to analyzing mRNA expression changes in either the bacterial pathogen or the infected eukaryotic host cell. However, the increasing sensitivity of high-throughput RNA sequencing now enables “dual RNA-seq” studies, simultaneously capturing all classes of coding and noncoding transcripts in both the pathogen and the host. In the five years since the concept of dual RNA-seq was introduced, the technique has been applied to a range of infection models. This has not only led to a better understanding of the physiological changes in pathogen and host during the course of an infection but has also revealed hidden molecular phenotypes of virulence-associated small noncoding RNAs that were not visible in standard infection assays. Here, we use the knowledge gained from these recent studies to suggest experimental and computational guidelines for the design of future dual RNA-seq studies. We conclude this review by discussing prospective applications of the technique. KW - Medicine KW - RNA sequencing KW - Salmonellosis KW - Transcriptome analysis KW - Gene expression KW - Bacterial pathogens KW - Salmonella KW - Host cells KW - Lysis (medicine) Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-171921 VL - 13 IS - 2 ER - TY - CHAP A1 - Werner, Rudolf A1 - Wakabayashi, Hiroshi A1 - Jahns, Roland A1 - Ergün, Süleyman A1 - Jahns, Valerie A1 - Higuchi, Takahiro T1 - PET-Guided Histological Characterization of Myocardial Infiltrating Cells in a Rat Model of Myocarditis T2 - European Heart Journal - Cardiovascular Imaging N2 - No abstract available. KW - Myokarditis KW - positron emission tomography KW - myocarditis KW - PET KW - 18F-FDG Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-161127 SN - 2047-2404 N1 - This is a pre-copyedited, author-produced version of an article accepted for publication in European Heart Journal Cardiovascular Imaging following peer review. The version of record . Eur Heart J Cardiovasc Imaging. ISSN: 2047-2404. Supplement, vol. 18, i1-i3, May 2017 is available online at: 10.1093/ehjci/jex071. VL - 18 IS - Supplement PB - Oxford University Press ER - TY - CHAP A1 - Werner, Rudolf A1 - Lapa, Constantin A1 - Buck, Andreas A1 - Lassmann, Michael A1 - Hänscheid, Heribert T1 - Less is sometimes more – Accurate Dose Mapping after Endoradiotherapy with \(^{177}\)Lu-DOTATATE/-TOC by One-Single Measurement after 96 h T2 - Journal of Nuclear Medicine N2 - No abstract available. KW - Neuroendocrine Tumor KW - theranostics KW - 177Lu-DOTATATE KW - 177Lu-DOTATOC KW - PRRT Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-161168 UR - http://jnm.snmjournals.org/content/58/supplement_1/247.abstract SN - 0161-5505 N1 - This research was originally published in JNM. Werner R.A., Lapa C., Buck A.K., Lassmann M., Hänscheid H.Less is sometimes more – Accurate Dose Mapping after Endoradiotherapy with 177Lu-DOTATATE/-TOC by One-Single Measurement after 96 h. J Nucl Med May 1, 2017 vol. 58 no. supplement 1:247. © SNMMI VL - 58 IS - No. Supplement 1 PB - Society of Nuclear Medicine and Molecular Imaging ER - TY - CHAP A1 - Werner, Rudolf A1 - Kobayashi, Ryohei A1 - Wakabayashi, Hiroshi A1 - Lapa, Constantin A1 - Menke, Andreas A1 - Higuchi, Takahiro T1 - Effect of Antidepressants on Radiolabeled Metaiodobenzylguanidine (MIBG) Uptake T2 - European Heart Journal - Cardiovascular Imaging N2 - No abstract available. KW - MIBG KW - Metaiodobenzylguanidine KW - mIBG KW - antidepressants Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-161116 SN - 2047-2404 N1 - This is a pre-copyedited, author-produced version of an article accepted for publication in European Heart Journal Cardiovascular Imaging following peer review. The version of record Eur Heart J Cardiovasc Imaging. ISSN: 2047-2404. Supplement, vol. 18, i52-53, May 2017 is available online at: 10.1093/ehjci/jex080. VL - 18 IS - Supplement PB - Oxford University Press ER - TY - CHAP A1 - Werner, Rudolf A1 - Higuchi, Takahiro A1 - Muegge, Dirk A1 - Javadi, Mehrbod S. A1 - Märkl, Bruno A1 - Aulmann, Christoph A1 - Buck, Andreas K. A1 - Fassnacht, Martin A1 - Lapa, Constantin A1 - Kreissl, Michael C. T1 - Predictive value of FDG-PET in patients with advanced medullary thyroid cancer undergoing vandetanib treatment T2 - Journal of Nuclear Medicine N2 - Introduction: The prognosis of medullary thyroid carcinoma (MTC) is poor using common chemotherapeutic approaches. However, during the last years encouraging results of recently introduced tyrosine kinase inhibitors (TKI) such as vandetanib have been published. In this study we aimed to correlate the results of \(^{18}\)F-fluorodeoxyglucose ([\(^{18}\)F]FDG) positron emission tomography (PET) imaging with treatment outcome. Methods: Eighteen patients after thyroidectomy with recurrent/advanced MTC lesions receiving vandetanib (300 mg orally/day) could be analysed. A baseline \(^{18}\)F-FDG PET prior to and a follow-up \(^{18}\)F-FDG PET 3 months after TKI initiation were performed. During follow-up, tumor progression was assessed every 3 months including computed tomography according to RECIST. Progression-free survival (PFS) was correlated with the maximum standardized uptake value of \(^{18}\)F-FDG in lymph nodes (SUV(LN)max) or visceral metastases (SUV(MTS)max) as well as with clinical parameters using ROC analysis. Results: Within median 3.6 years of follow-up, 9 patients showed disease progression at median 8.5 months after TKI initiation. An elevated glucose consumption assessed by baseline \(^{18}\)F-FDG PET (SUV(LN)max > 7.25) could predict a shorter PFS (2 y) with an accuracy of 76.5% (SUV(LN)max <7.25, 4.3 y; p=0.03). Accordingly, preserved tumor metabolism in the follow-up PET (SUV(MTS)max >2.7) also demonstrated an unfavorable prognosis (accuracy, 85.7%). On the other hand, none of the clinical parameters reached significance in response prediction. Conclusions: In patients with advanced and progressive MTC, tumors with higher metabolic activity at baseline are more aggressive and more prone to progression as reflected by a shorter PFS; they should be monitored more closely. Preserved glucose consumption 3 months after treatment initiation was also related to poorer prognosis. KW - 18F-FDG KW - vandetanib KW - TKI KW - PET KW - positron emission tomography Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-161147 UR - http://jnm.snmjournals.org/content/58/supplement_1/169 SN - 0161-5505 N1 - This research was originally published in JNM. Rudolf A. Werner, Takahiro Higuchi, Dirk O. Muegge, Mehrbod S. Javadi, B. Märkl, C. Aulmann, Andreas K. Buck, Martin Fassnacht, Constantin Lapa, Michael C. Kreissl. Predictive value of FDG-PET in patients with advanced medullary thyroid cancer undergoing vandetanib treatment. J Nucl Med. May 1, 2017; vol. 58 no. supplement 1:169. © SNMMI. VL - 58 IS - no. supplement 1 ER - TY - CHAP A1 - Werner, Rudolf A1 - Chen, Xinyu A1 - Lapa, Constantin A1 - Robinson, Simon A1 - Higuchi, Takahiro T1 - Intracellular behavior of the novel sympathetic nerve agent \(^{18}\)F-LMI1195 T2 - Journal of Nuclear Cardiology N2 - No abstract available. KW - Herz KW - PET KW - sympathetic nerve KW - autonomic nervous system KW - 18F-LMI1195 KW - positron emission tomography KW - heart KW - cardiac Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-161137 SN - 1071-3581 N1 - This is a post-peer-review, pre-copyedit version of an article published in J Nucl Cardiol. ISSN: 1071-3581. Supplement (2017) Aug;24;4: 1461-1496. The final authenticated version is available online at: http://dx.doi.org/10.1007/s12350-017-0984-y VL - 24 IS - 4 Supplement (2017) Aug ER - TY - JOUR A1 - Werner, Rudolf A. A1 - Weich, Alexander A1 - Higuchi, Takahiro A1 - Schmid, Jan S. A1 - Schirbel, Andreas A1 - Lassmann, Michael A1 - Wild, Vanessa A1 - Rudelius, Martina A1 - Kudlich, Theodor A1 - Herrmann, Ken A1 - Scheurlen, Michael A1 - Buck, Andreas K. A1 - Kropf, Saskia A1 - Wester, Hans-Jürgen A1 - Lapa, Constantin T1 - Imaging of Chemokine Receptor 4 Expression in Neuroendocrine Tumors - a Triple Tracer Comparative Approach JF - Theranostics N2 - C-X-C motif chemokine receptor 4 (CXCR4) and somatostatin receptors (SSTR) are overexpressed in gastro-entero-pancreatic neuroendocrine tumors (GEP-NET). In this study, we aimed to elucidate the feasibility of non-invasive CXCR4 positron emission tomography/computed tomography (PET/CT) imaging in GEP-NET patients using [\(^{68}\)Ga]Pentixafor in comparison to \(^{68}\)Ga-DOTA-D-Phe-Tyr3-octreotide ([\(^{68}\)Ga]DOTATOC) and \(^{18}\)F-fluorodeoxyglucose ([\(^{18}\)F]FDG). Twelve patients with histologically proven GEP-NET (3xG1, 4xG2, 5xG3) underwent [\(^{68}\)Ga]DOTATOC, [\(^{18}\)F]FDG, and [\(^{68}\)Ga]Pentixafor PET/CT for staging and planning of the therapeutic management. Scans were analyzed on a patient as well as on a lesion basis and compared to immunohistochemical staining patterns of CXCR4 and somatostatin receptors SSTR2a and SSTR5. [\(^{68}\)Ga]Pentixafor visualized tumor lesions in 6/12 subjects, whereas [\(^{18}\)F]FDG revealed sites of disease in 10/12 and [\(^{68}\)Ga]DOTATOC in 11/12 patients, respectively. Regarding sensitivity, SSTR-directed PET was the superior imaging modality in all G1 and G2 NET. CXCR4-directed PET was negative in all G1 NET. In contrast, 50% of G2 and 80% of G3 patients exhibited [\(^{68}\)Ga]Pentixafor-positive tumor lesions. Whereas CXCR4 seems to play only a limited role in detecting well-differentiated NET, increasing receptor expression could be non-invasively observed with increasing tumor grade. Thus, [\(^{68}\)Ga]Pentixafor PET/CT might serve as non-invasive read-out for evaluating the possibility of CXCR4-directed endoradiotherapy in advanced dedifferentiated SSTR-negative tumors. KW - SSTR KW - peptide receptor radionuclide therapy KW - neuroendocrine tumor KW - [\(^{68}\)Ga]Pentixafor KW - CXCR4 KW - chemokine receptor KW - PET/CT KW - DOTATOC KW - PRRT KW - Positronen-Emissions-Tomografie Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-158008 VL - 7 IS - 6 ER - TY - JOUR A1 - Werner, Rudolf A. A1 - Sheikhbahaei, Sara A1 - Jones, Krystyna M. A1 - Javadi, Mehrbod S. A1 - Solnes, Lilja B. A1 - Ross, Ashley E. A1 - Allaf, Mohamad E. A1 - Pienta, Kenneth J. A1 - Lapa, Constantin A1 - Buck, Andreas K. A1 - Higuchi, Takahiro A1 - Pomper, Martin G. A1 - Gorin, Micheal A. A1 - Rowe, Steven P. T1 - Patterns of uptake of prostate-specific membrane antigen (PSMA)-targeted \(^{18}\)F-DCFPyL in peripheral ganglia JF - Annals of Nuclear Medicine N2 - Objective: Radiotracers targeting prostate-specific membrane antigen (PSMA) have increasingly been recognized as showing uptake in a number of normal structures, anatomic variants, and non-prostate-cancer pathologies. We aimed to explore the frequency and degree of uptake in peripheral ganglia in patients undergoing PET with the PSMA-targeted agent \(^{18}\)F-DCFPyL. Methods: A total of 98 patients who underwent \(^{18}\)F-DCFPyL PET/CT imaging were retrospectively analyzed. This included 76 men with prostate cancer (PCa) and 22 patients with renal cell carcinoma (RCC; 13 men, 9 women). Scans were evaluated for uptake in the cervical, stellate, celiac, lumbar and sacral ganglia. Maximum standardized uptake value corrected to body weight (SUV\(_{max}\)), and maximum standardized uptake value corrected to lean body mass (SUL\(_{max}\)) were recorded for all ganglia with visible uptake above background. Ganglia-to-background ratios were calculated by dividing the SUV\(_{max}\) and SUL\(_{max}\) values by the mean uptake in the ascending aorta (Aortamean) and the right gluteus muscle (Gluteusmean). Results: Overall, 95 of 98 (96.9%) patients demonstrated uptake in at least one of the evaluated peripheral ganglia. With regard to the PCa cohort, the most frequent sites of radiotracer accumulation were lumbar ganglia (55/76, 72.4%), followed by the cervical ganglia (51/76, 67.1%). Bilateral uptake was found in the majority of cases [lumbar 44/55 (80%) and cervical 30/51 (58.8%)]. Additionally, discernible radiotracer uptake was recorded in 50/76 (65.8%) of the analyzed stellate ganglia and in 45/76 (59.2%) of the celiac ganglia, whereas only 5/76 (6.6%) of the sacral ganglia demonstrated \(^{18}\)F-DCFPyL accumulation. Similar findings were observed for patients with RCC, with the most frequent locations of radiotracer uptake in both the lumbar (20/22, 90.9%) and cervical ganglia (19/ 22, 86.4%). No laterality preference was found in mean PSMA-ligand uptake for either the PCa or RCC cohorts. Conclusion: As PSMA-targeted agents become more widely disseminated, the patterns of uptake in structures that are not directly relevant to patients’ cancers must be understood. This is the first systematic evaluation of the uptake of \(^{18}\)F-DCFPyL in ganglia demonstrating a general trend with a descending frequency of radiotracer accumulation in lumbar, cervical, stellate, celiac, and sacral ganglia. The underlying biology that leads to variability of PSMA-targeted radiotracers in peripheral ganglia is not currently understood, but may provide opportunities for future research. KW - 18F-DCFPL KW - Positronen-Emissions-Tomografie KW - Prostata KW - PSMA KW - Ganglia KW - Pitfall KW - PET KW - Tracer KW - Radiotracer KW - Imaging pitfalls KW - Prostate Cancer Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-166971 SN - 0914-7187 VL - 31 IS - 9 ER - TY - JOUR A1 - Weiste, Christoph A1 - Pedrotti, Lorenzo A1 - Selvanayagam, Jebasingh A1 - Muralidhara, Prathibha A1 - Fröschel, Christian A1 - Novák, Ondřej A1 - Ljung, Karin A1 - Hanson, Johannes A1 - Dröge-Laser, Wolfgang T1 - The Arabidopsis bZIP11 transcription factor links low-energy signalling to auxin-mediated control of primary root growth JF - PLoS Genetics N2 - Plants have to tightly control their energy homeostasis to ensure survival and fitness under constantly changing environmental conditions. Thus, it is stringently required that energy-consuming stress-adaptation and growth-related processes are dynamically tuned according to the prevailing energy availability. The evolutionary conserved SUCROSE NON-FERMENTING1 RELATED KINASES1 (SnRK1) and the downstream group C/S\(_{1}\) basic leucine zipper (bZIP) transcription factors (TFs) are well-characterised central players in plants’ low-energy management. Nevertheless, mechanistic insights into plant growth control under energy deprived conditions remains largely elusive. In this work, we disclose the novel function of the low-energy activated group S\(_{1}\) bZIP11-related TFs as regulators of auxin-mediated primary root growth. Whereas transgenic gain-of-function approaches of these bZIPs interfere with the activity of the root apical meristem and result in root growth repression, root growth of loss-of-function plants show a pronounced insensitivity to low-energy conditions. Based on ensuing molecular and biochemical analyses, we propose a mechanistic model, in which bZIP11-related TFs gain control over the root meristem by directly activating IAA3/SHY2 transcription. IAA3/SHY2 is a pivotal negative regulator of root growth, which has been demonstrated to efficiently repress transcription of major auxin transport facilitators of the PIN-FORMED (PIN) gene family, thereby restricting polar auxin transport to the root tip and in consequence auxin-driven primary root growth. Taken together, our results disclose the central low-energy activated SnRK1-C/S\(_{1}\)-bZIP signalling module as gateway to integrate information on the plant’s energy status into root meristem control, thereby balancing plant growth and cellular energy resources. KW - root growth KW - sucrose KW - auxins KW - meristems KW - regulator genes KW - genetically modified plants KW - gene expression KW - plant growth and development Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-157742 VL - 13 IS - 2 ER - TY - JOUR A1 - Weigand, Isabel A1 - Ronchi, Cristina L. A1 - Rizk-Rabin, Marthe A1 - Dalmazi, Guido Di A1 - Wild, Vanessa A1 - Bathon, Kerstin A1 - Rubin, Beatrice A1 - Calebiro, Davide A1 - Beuschlein, Felix A1 - Bertherat, Jérôme A1 - Fassnacht, Martin A1 - Sbiera, Silviu T1 - Differential expression of the protein kinase A subunits in normal adrenal glands and adrenocortical adenomas JF - Scientific Reports N2 - Somatic mutations in protein kinase A catalytic α subunit (PRKACA) were found to be causative for 30-40% of cortisol-producing adenomas (CPA) of the adrenal gland, rendering PKA signalling constitutively active. In its resting state, PKA is a stable and inactive heterotetramer, consisting of two catalytic and two regulatory subunits with the latter inhibiting PKA activity. The human genome encodes three different PKA catalytic subunits and four different regulatory subunits that are preferentially expressed in different organs. In normal adrenal glands all regulatory subunits are expressed, while CPA exhibit reduced protein levels of the regulatory subunit IIβ. In this study, we linked for the first time the loss of RIIβ protein levels to the PRKACA mutation status and found the down-regulation of RIIβ to arise post-transcriptionally. We further found the PKA subunit expression pattern of different tumours is also present in the zones of the normal adrenal cortex and demonstrate that the different PKA subunits have a differential expression pattern in each zone of the normal adrenal gland, indicating potential specific roles of these subunits in the regulation of different hormones secretion. KW - kinases KW - immunohistochemistry Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-157952 VL - 7 IS - 49 ER - TY - JOUR A1 - Wegert, Jenny A1 - Vokuh, Christian A1 - Ziegler, Barbara A1 - Ernestus, Karen A1 - Leuschner, Ivo A1 - Furtwängler, Rhoikos A1 - Graf, Norbert A1 - Gessler, Manfred T1 - TP53 alterations in Wilms tumour represent progression events with strong intratumour heterogeneity that are closely linked but not limited to anaplasia JF - The Journal of Pathology: Clinical Research N2 - TP53 mutations have been associated with anaplasia in Wilms tumour, which conveys a high risk for relapse and fatal outcome. Nevertheless, TP53 alterations have been reported in no more than 60% of anaplastic tumours, and recent data have suggested their presence in tumours that do not fulfil the criteria for anaplasia, questioning the clinical utility of TP53 analysis. Therefore, we characterized the TP53 status in 84 fatal cases of Wilms tumour, irrespective of histological subtype. We identified TP53 alterations in at least 90% of fatal cases of anaplastic Wilms tumour, and even more when diffuse anaplasia was present, indicating a very strong if not absolute coupling between anaplasia and deregulation of p53 function. Unfortunately, TP53 mutations do not provide additional predictive value in anaplastic tumours since the same mutation rate was found in a cohort of non-fatal anaplastic tumours. When classified according to tumour stage, patients with stage I diffuse anaplastic tumours still had a high chance of survival (87%), but this rate dropped to 26% for stages II–IV. Thus, volume of anaplasia or possible spread may turn out to be critical parameters. Importantly, among non-anaplastic fatal tumours, 26% had TP53 alterations, indicating that TP53 screening may identify additional cases at risk. Several of these non-anaplastic tumours fulfilled some criteria for anaplasia, for example nuclear unrest, suggesting that such partial phenotypes should be under special scrutiny to enhance detection of high-risk tumours via TP53 screening. A major drawback is that these alterations are secondary changes that occur only later in tumour development, leading to striking intratumour heterogeneity that requires multiple biopsies and analysis guided by histological criteria. In conclusion, we found a very close correlation between histological signs of anaplasia and TP53 alterations. The latter may precede development of anaplasia and thereby provide diagnostic value pointing towards aggressive disease. KW - tumour heterogeneity KW - Wilms tumour KW - nephroblastoma KW - anaplasia KW - TP53 Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-158302 VL - 3 ER - TY - JOUR A1 - Wanzek, Katharina A1 - Schwindt, Eike A1 - Capra, John A. A1 - Paeschke, Katrin T1 - Mms1 binds to G-rich regions in Saccharomyces cerevisiae and influences replication and genome stability JF - Nucleic Acids Research N2 - The regulation of replication is essential to preserve genome integrity. Mms1 is part of the E3 ubiquitin ligase complex that is linked to replication fork progression. By identifying Mms1 binding sites genome-wide in Saccharomyces cerevisiae we connected Mms1 function to genome integrity and replication fork progression at particular G-rich motifs. This motif can form G-quadruplex (G4) structures in vitro. G4 are stable DNA structures that are known to impede replication fork progression. In the absence of Mms1, genome stability is at risk at these G-rich/G4 regions as demonstrated by gross chromosomal rearrangement assays. Mms1 binds throughout the cell cycle to these G-rich/G4 regions and supports the binding of Pif1 DNA helicase. Based on these data we propose a mechanistic model in which Mms1 binds to specific G-rich/G4 motif located on the lagging strand template for DNA replication and supports Pif1 function, DNA replication and genome integrity. KW - replication KW - regulation KW - genome integrity KW - Saccharomyces cerevisiae Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-170577 VL - 45 IS - 13 ER - TY - INPR A1 - Wang, Sunewang Rixin A1 - Arrowsmith, Merle A1 - Braunschweig, Holger A1 - Dewhurst, Rian A1 - Paprocki, Valerie A1 - Winner, Lena T1 - CuOTf-mediated intramolecular diborene hydroarylation T2 - Chemical Communications N2 - Upon complexation to CuOTf, a PMe\(_3\)-stabilized bis(9-anthryl) diborene slowly undergoes an intramolecular hydroarylation reaction at room temperature. Subsequent triflation of the B–H bond with CuOTf, followed by a PMe\(_3\) transfer, finally yields a cyclic sp\(^2\)-sp\(^3\) boryl-substituted boronium triflate salt. KW - boron KW - C-H activation KW - transition metals Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-154055 N1 - This is the pre-peer reviewed version of the following article: Chemical Communications, 2017, 11945-11947 which has been published at DOI: 10.1039/C7CC07371B. ER - TY - INPR A1 - Wang, Sunewang Rixin A1 - Arrowsmith, Merle A1 - Braunschweig, Holger A1 - Dewhurst, Rian A1 - Dömling, Michael A1 - Mattock, James A1 - Pranckevicius, Conor A1 - Vargas, Alfredo T1 - Monomeric 16-Electron π-Diborene Complexes of Zn(II) and Cd(II) T2 - Journal of the American Chemical Society N2 - Despite the prevalence of stable π-complexes of most d\(^{10}\) metals, such as Cu(I) and Ni(0), with ethylene and other olefins, complexation of d\(^{10}\) Zn(II) to simple olefins is too weak to form isolable complexes due to the metal ion's limited capacity for π-backdonation. By employing more strongly donating π- ligands, namely neutral diborenes with a high-lying π(B=B) or- bital, monomeric 16-electron M(II)-diborene (M = Zn, Cd) π- complexes were synthesized in good yields. Metal–B2 π- interactions in both the solid and solution state were confirmed by single-crystal X-ray analyses and their solution NMR and UV-vis absorption spectroscopy, respectively. The M(II) centers adopt a trigonal planar geometry and interact almost symmetrically with both boron atoms. The MB2 planes significantly twist out of the MX\(_2\) planes about the M-centroid(B–B) vector, with angles rang- ing from 47.0° to 85.5°, depending on the steric interactions be- tween the diborene ligand and the MX\(_2\) fragment. KW - boron KW - transition metal complex KW - diborene Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-153058 N1 - This is the pre-peer reviewed version of the following article: Journal of the American Chemical Society, 2017, 139 (31), pp 10661–10664, which has been published in final form at doi:10.1021/jacs.7b06644. ER - TY - INPR A1 - Wang, Sunewang R. A1 - Arrowsmith, Merle A1 - Böhnke, Julian A1 - Braunschweig, Holger A1 - Dellermann, Theresa A1 - Dewhurst, Rian D. A1 - Kelch, Hauke A1 - Krummenacher, Ivo A1 - Mattock, James D. A1 - Müssig, Jonas H. A1 - Thiess, Torsten A1 - Vargas, Alfredo A1 - Zhang, Jiji T1 - Engineering a Small HOMO-LUMO Gap and Intramolecular B–B Hydroarylation by Diborene/Anthracene Orbital Intercalation T2 - Angewandte Chemie, International Edition N2 - The diborene 1 was synthesized by reduction of a mixture of 1,2-di-9-anthryl-1,2-dibromodiborane(4) (6) and trimethylphosphine with potassium graphite. The X-ray structure of 1 shows the two anthryl rings to be parallel and their π(C\(_{14}\)) systems perpendicular to the diborene π(B=B) system. This twisted conformation allows for intercalation of the relatively high-lying π(B=B) orbital and the low-lying π* orbital of the anthryl moiety with no significant conjugation, resulting in a small HOMO-LUMO gap (HLG) and ultimately an unprecedented anthryl B–B bond hydroarylation. The HLG of 1 was estimated to be 1.57 eV from the onset of the long wavelength band in its UV–vis absorption spectrum (THF, λ\(_{onset}\) = 788 nm). The oxidation of 1 with elemental selenium afforded diboraselenirane 8 in quantitative yield. By oxidative abstraction of one phosphine ligand by another equivalent of elemental selenium, the B–B and C\(^1\)–H bonds of 8 were cleaved to give the cyclic 1,9-diboraanthracene 9. KW - boron KW - small HOMO-LUMO gap KW - diborenes KW - borylation KW - hydroarylation Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-148126 N1 - This is the pre-peer reviewed version of the following article: S. R. Wang, M. Arrowsmith, J. Böhnke, H. Braunschweig, T. Dellermann, R. D. Dewhurst, H. Kelch, I. Krummenacher, J. D. Mattock, J. H. Müssig, T. Thiess, A. Vargas, J. Zhang, Angew. Chem. Int. Ed. 2017, 56, 8009., which has been published in final form at DOI: 10.1002/anie.201704063. This article may be used for non-commercial purposes in accordance with Wiley Terms and Conditions for Self-Archiving. VL - 56 IS - 27 ER - TY - JOUR A1 - Wang Ip, Chi A1 - Klaus, Laura-Christin A1 - Karikari, Akua A. A1 - Visanji, Naomi P. A1 - Brotchie, Jonathan M. A1 - Lang, Anthony E. A1 - Volkmann, Jens A1 - Koprich, James B. T1 - AAV1/2-induced overexpression of A53T-α-synuclein in the substantia nigra results in degeneration of the nigrostriatal system with Lewy-like pathology and motor impairment: a new mouse model for Parkinson’s disease JF - Acta Neuropathologica Communications N2 - α-Synuclein is a protein implicated in the etiopathogenesis of Parkinson’s disease (PD). AAV1/2-driven overexpression of human mutated A53T-α-synuclein in rat and monkey substantia nigra (SN) induces degeneration of nigral dopaminergic neurons and decreases striatal dopamine and tyrosine hydroxylase (TH). Given certain advantages of the mouse, especially it being amendable to genetic manipulation, translating the AAV1/2-A53T α-synuclein model to mice would be of significant value. AAV1/2-A53T α-synuclein or AAV1/2 empty vector (EV) at a concentration of 5.16 x 10\(^{12}\) gp/ml were unilaterally injected into the right SN of male adult C57BL/6 mice. Post-mortem examinations included immunohistochemistry to analyze nigral α-synuclein, Ser129 phosphorylated α-synuclein and TH expression, striatal dopamine transporter (DAT) levels by autoradiography and dopamine levels by high performance liquid chromatography. At 10 weeks, in AAV1/2-A53T α-synuclein mice there was a 33% reduction in TH+ dopaminergic nigral neurons (P < 0.001), 29% deficit in striatal DAT binding (P < 0.05), 38% and 33% reductions in dopamine (P < 0.001) and DOPAC (P < 0.01) levels and a 60% increase in dopamine turnover (homovanilic acid/dopamine ratio; P < 0.001). Immunofluorescence showed that the AAV1/2-A53T α-synuclein injected mice had widespread nigral and striatal expression of vector-delivered A53T-α-synuclein. Concurrent staining with human PD SN samples using gold standard histological methodology for Lewy pathology detection by proteinase K digestion and application of specific antibody raised against human Lewy body α-synuclein (LB509) and Ser129 phosphorylated α-synuclein (81A) revealed insoluble α-synuclein aggregates in AAV1/2-A53T α-synuclein mice resembling Lewy-like neurites and bodies. In the cylinder test, we observed significant paw use asymmetry in the AAV1/2-A53T α-synuclein group when compared to EV controls at 5 and 9 weeks post injection (P < 0.001; P < 0.05). These data show that unilateral injection of AAV1/2-A53T α-synuclein into the mouse SN leads to persistent motor deficits, neurodegeneration of the nigrostriatal dopaminergic system and development of Lewy-like pathology, thereby reflecting clinical and pathological hallmarks of human PD. KW - Lewy-like pathology KW - Parkinson’s disease KW - α-synuclein KW - A53T KW - mutation KW - mouse model Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-159429 VL - 5 IS - 11 ER - TY - JOUR A1 - Wallmann-Sperlich, Birgit A1 - Bipp, Tanja A1 - Bucksch, Jens A1 - Froboese, Ingo T1 - Who uses height-adjustable desks? - Sociodemographic, health-related, and psycho-social variables of regular users JF - International Journal of Behavioral Nutrition and Physical Activity N2 - Background: Sit-to-stand height-adjustable desks (HAD) may promote workplace standing, as long as workers use them on a regular basis. The aim of this study was to investigate (i) how common HAD in German desk-based workers are, and how frequently HADs are used, (ii) to identify sociodemographic, health-related, and psycho-social variables of workday sitting including having a HAD, and (iii) to analyse sociodemographic, health-related, and psycho-social variables of users and non-users of HADs. Methods: A cross-sectional sample of 680 participants (51.9% men; 41.0 ± 13.1 years) in a desk-based occupation was interviewed by telephone about their occupational sitting and standing proportions, having and usage of a HAD, and answered questions concerning psycho-social variables of occupational sitting. The proportion of workday sitting was calculated for participants having an HAD (n = 108) and not-having an HAD (n = 573), as well as for regular users of HAD (n = 54), and irregular/non-users of HAD (n = 54). Linear regressions were conducted to calculate associations between socio-demographic, health-related, psychosocial variables and having/not having an HAD, and the proportion of workday sitting. Logistic regressions were executed to examine the association of mentioned variables and participants’ usage of HADs. Results: Sixteen percent report that they have an HAD, and 50% of these report regular use of HAD. Having an HAD is not a correlate of the proportion of workday sitting. Further analysis restricted to participants having available a HAD highlights that only the ‘perceived advantages of sitting less’ was significantly associated with HAD use in the fully adjusted model (OR 1.75 [1.09; 2.81], p < 0.05). Conclusions: The present findings indicate that accompanying behavioral action while providing an HAD is promising to increase the regular usage of HAD. Hence, future research needs to address the specificity of behavioral actions in order to enhance regular HAD use, and needs to give more fundamental insights into these associations. KW - cross-sectional KW - office-workers KW - desk-based KW - height-adjustable desk KW - occupational sitting and physical activity questionnaire KW - sitting time KW - correlates KW - natural approach Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-157888 VL - 14 IS - 26 ER - TY - JOUR A1 - Waider, J A1 - Popp, S A1 - Lange, MD A1 - Kern, R A1 - Kolter, JF A1 - Kobler, J A1 - Donner, NC A1 - Lowe, KR A1 - Malzbender, JH A1 - Brazell, CJ A1 - Arnold, MR A1 - Aboagye, B A1 - Schmitt-Böhrer, A A1 - Lowry, CA A1 - Pape, HC A1 - Lesch, KP T1 - Genetically driven brain serotonin deficiency facilitates panic-like escape behavior in mice JF - Translational Psychiatry N2 - Multiple lines of evidence implicate brain serotonin (5-hydroxytryptamine; 5-HT) system dysfunction in the pathophysiology of stressor-related and anxiety disorders. Here we investigate the influence of constitutively deficient 5-HT synthesis on stressor-related anxiety-like behaviors using Tryptophan hydroxylase 2 (Tph2) mutant mice. Functional assessment of c-Fos after associated foot shock, electrophysiological recordings of GABAergic synaptic transmission, differential expression of the Slc6a4 gene in serotonergic neurons were combined with locomotor and anxiety-like measurements in different contextual settings. Our findings indicate that constitutive Tph2 inactivation and consequential lack of 5-HT synthesis in Tph2 null mutant mice (Tph2\(^{-/-}\)) results in increased freezing to associated foot shock and a differential c-Fos activity pattern in the basolateral complex of the amygdala. This is accompanied by altered GABAergic transmission as observed by recordings of inhibitory postsynaptic currents on principal neurons in the basolateral nucleus, which may explain increased fear associated with hyperlocomotion and escape-like responses in aversive inescapable contexts. In contrast, lifelong 5-HT deficiency as observed in Tph2 heterozygous mice (Tph\(^{+/-}\)) is able to be compensated through reduced GABAergic transmission in the basolateral nucleus of the amygdala based on Slc6a4 mRNA upregulation in subdivisions of dorsal raphe neurons. This results in increased activity of the basolateral nucleus of the amygdala due to associated foot shock. In conclusion, our results reflect characteristic syndromal dimensions of panic disorder and agoraphobia. Thus, constitutive lack of 5-HT synthesis influence the risk for anxiety- and stressor-related disorders including panic disorder and comorbid agoraphobia through the absence of GABAergic-dependent compensatory mechanisms in the basolateral nucleus of the amygdala. KW - anxiety KW - stress KW - serotonin KW - genetics KW - mice Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-170239 VL - 7 IS - e1246 ER - TY - JOUR A1 - Wagner, Martin A1 - Wanner, Christoph A1 - Schich, Martin A1 - Kotseva, Kornelia A1 - Wood, David A1 - Hartmann, Katrin A1 - Fette, Georg A1 - Rücker, Viktoria A1 - Oezkur, Mehmet A1 - Störk, Stefan A1 - Heuschmann, Peter U. T1 - Patient’s and physician’s awareness of kidney disease in coronary heart disease patients – a cross-sectional analysis of the German subset of the EUROASPIRE IV survey JF - BMC Nephrology N2 - Background Chronic kidney disease (CKD) is a common comorbid condition in coronary heart disease (CHD). CKD predisposes the patient to acute kidney injury (AKI) during hospitalization. Data on awareness of kidney dysfunction among CHD patients and their treating physicians are lacking. In the current cross-sectional analysis of the German EUROASPIRE IV sample we aimed to investigate the physician’s awareness of kidney disease of patients hospitalized for CHD and also the patient’s awareness of CKD in a study visit following hospital discharge. Methods All serum creatinine (SCr) values measured during the hospital stay were used to describe impaired kidney function (eGFR\(_{CKD-EPI}\) < 60 ml/min/1.73m2) at admission, discharge and episodes of AKI (KDIGO definition). Information extracted from hospital discharge letters and correct ICD coding for kidney disease was studied as a surrogate of physician’s awareness of kidney disease. All patients were interrogated 0.5 to 3 years after hospital discharge, whether they had ever been told about kidney disease by a physician. Results Of the 536 patients, 32% had evidence for acute or chronic kidney disease during the index hospital stay. Either condition was mentioned in the discharge letter in 22%, and 72% were correctly coded according to ICD-10. At the study visit in the outpatient setting 35% had impaired kidney function. Of 158 patients with kidney disease, 54 (34%) were aware of CKD. Determinants of patient’s awareness were severity of CKD (OR\(_{eGFR}\) 0.94; 95%CI 0.92–0.96), obesity (OR 1.97; 1.07–3.64), history of heart failure (OR 1.99; 1.00–3.97), and mentioning of kidney disease in the index event’s hospital discharge letter (OR 5.51; 2.35–12.9). Conclusions Although CKD is frequent in CHD, only one third of patients is aware of this condition. Patient’s awareness was associated with kidney disease being mentioned in the hospital discharge letter. Future studies should examine how raising physician’s awareness for kidney dysfunction may improve patient’s awareness of CKD. KW - coronary heart disease KW - ICD-coding of CKD KW - chronic kidney disease KW - patients’ awareness KW - physicians’ awareness KW - EUROASPIRE survey Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-158387 VL - 18 IS - 321 ER - TY - JOUR A1 - Wagener, Johannes A1 - Loiko, Veronika T1 - Recent insights into the paradoxical effect of echinocandins JF - Journal of Fungi N2 - Echinocandin antifungals represent one of the most important drug classes for the treatment of invasive fungal infections. The mode of action of the echinocandins relies on inhibition of the β-1,3-glucan synthase, an enzyme essentially required for the synthesis of the major fungal cell wall carbohydrate β-1,3-glucan. Depending on the species, echinocandins may exert fungicidal or fungistatic activity. Apparently independent of this differential activity, a surprising in vitro phenomenon called the “paradoxical effect” can be observed. The paradoxical effect is characterized by the ability of certain fungal isolates to reconstitute growth in the presence of higher echinocandin concentrations, while being fully susceptible at lower concentrations. The nature of the paradoxical effect is not fully understood and has been the focus of multiple studies in the last two decades. Here we concisely review the current literature and propose an updated model for the paradoxical effect, taking into account recent advances in the field. KW - echinocandin KW - caspofungin KW - micafungin KW - anidulafungin KW - paradoxical effect KW - paradoxical growth KW - glucan synthase KW - Fks1 KW - antifungals KW - echinocandins Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-197960 SN - 2309-608X VL - 4 IS - 1 ER - TY - JOUR A1 - Vona, Barbara A1 - Nanda, Indrajit A1 - Shehata-Dieler, Wafaa A1 - Haaf, Thomas T1 - Genetics of Tinnitus: Still in its Infancy JF - Frontiers in Neuroscience N2 - Tinnitus is the perception of a phantom sound that affects between 10 and 15% of the general population. Despite this considerable prevalence, treatments for tinnitus are presently lacking. Tinnitus exhibits a diverse array of recognized risk factors and extreme clinical heterogeneity. Furthermore, it can involve an unknown number of auditory and non-auditory networks and molecular pathways. This complex combination has hampered advancements in the field. The identification of specific genetic factors has been at the forefront of several research investigations in the past decade. Nine studies have examined genes in a case-control association approach. Recently, a genome-wide association study has highlighted several potentially significant pathways that are implicated in tinnitus. Two twin studies have calculated a moderate heritability for tinnitus and disclosed a greater concordance rate in monozygotic twins compared to dizygotic twins. Despite the more recent data alluding to genetic factors in tinnitus, a strong association with any specific genetic locus is lacking and a genetic study with sufficient statistical power has yet to be designed. Future research endeavors must overcome the many inherent limitations in previous study designs. This review summarizes the previously embarked upon tinnitus genetic investigations and summarizes the hurdles that have been encountered. The identification of candidate genes responsible for tinnitus may afford gene based diagnostic approaches, effective therapy development, and personalized therapeutic intervention. KW - twin study KW - complex disorders KW - genetics KW - genetic heterogeneity KW - genome-wide association study (GWAS) KW - hearing loss KW - tinnitus Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-170926 VL - 11 IS - 236 ER - TY - JOUR A1 - von Mammen, Sebastian Albrecht A1 - Wagner, Daniel A1 - Knote, Andreas A1 - Taskin, Umut T1 - Interactive simulations of biohybrid systems JF - Frontiers in Robotics and AI N2 - In this article, we present approaches to interactive simulations of biohybrid systems. These simulations are comprised of two major computational components: (1) agent-based developmental models that retrace organismal growth and unfolding of technical scaffoldings and (2) interfaces to explore these models interactively. Simulations of biohybrid systems allow us to fast forward and experience their evolution over time based on our design decisions involving the choice, configuration and initial states of the deployed biological and robotic actors as well as their interplay with the environment. We briefly introduce the concept of swarm grammars, an agent-based extension of L-systems for retracing growth processes and structural artifacts. Next, we review an early augmented reality prototype for designing and projecting biohybrid system simulations into real space. In addition to models that retrace plant behaviors, we specify swarm grammar agents to braid structures in a self-organizing manner. Based on this model, both robotic and plant-driven braiding processes can be experienced and explored in virtual worlds. We present an according user interface for use in virtual reality. As we present interactive models concerning rather diverse description levels, we only ensured their principal capacity for interaction but did not consider efficiency analyzes beyond prototypic operation. We conclude this article with an outlook on future works on melding reality and virtuality to drive the design and deployment of biohybrid systems. KW - biohybrid systems KW - augmented reality KW - virtual reality KW - user interfaces KW - biological development KW - generative systems Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-195755 SN - 2296-9144 VL - 4 ER - TY - JOUR A1 - Veniaminova, Ekaterina A1 - Cespuglio, Raymond A1 - Cheung, Chi Wai A1 - Umriukhin, Alexei A1 - Markova, Nataliia A1 - Shevtsova, Elena A1 - Lesch, Klaus-Peter A1 - Anthony, Daniel C. A1 - Strekalova, Tatyana T1 - Autism-like behaviours and memory deficits result from a Western Diet in mice JF - Neural Plasticity N2 - Nonalcoholic fatty liver disease, induced by a Western diet (WD), evokes central and peripheral inflammation that is accompanied by altered emotionality. These changes can be associated with abnormalities in social behaviour, hippocampus-dependent cognitive functions, and metabolism. Female C57BL/6J mice were fed with a regular chow or with a WD containing 0.2% of cholesterol and 21% of saturated fat for three weeks. WD-treated mice exhibited increased social avoidance, crawl-over and digging behaviours, decreased body-body contacts, and hyperlocomotion. The WD-fed group also displayed deficits in hippocampal-dependent performance such as contextual memory in a fear conditioning and pellet displacement paradigms. A reduction in glucose tolerance and elevated levels of serum cholesterol and leptin were also associated with the WD. The peroxisome proliferator-activated receptor gamma coactivator 1-alpha (PPARGC1a) mRNA, a marker of mitochondrial activity, was decreased in the prefrontal cortex, hippocampus, hypothalamus, and dorsal raphe, suggesting suppressed brain mitochondrial functions, but not in the liver. This is the first report to show that a WD can profoundly suppress social interactions and induce dominant-like behaviours in naïve adult mice. The spectrum of behaviours that were found to be induced are reminiscent of symptoms associated with autism, and, if paralleled in humans, suggest that a WD might exacerbate autism spectrum disorder. KW - diet KW - autism-like behavior KW - mice Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-158211 ER - TY - JOUR A1 - Veldhoen, Simon A1 - Behzadi, Cyrus A1 - Lenz, Alexander A1 - Henes, Frank Oliver A1 - Rybczynski, Meike A1 - von Kodolitsch, Yskert A1 - Bley, Thorsten Alexander A1 - Adam, Gerhard A1 - Bannas, Peter T1 - Non-contrast MR angiography at 1.5 Tesla for aortic monitoring in Marfan patients after aortic root surgery JF - Journal of Cardiovascular Magnetic Resonance N2 - Background: Contrast-enhanced cardiovascular magnetic resonance angiography (CE-CMRA) is the established imaging modality for patients with Marfan syndrome requiring life-long annual aortic imaging before and after aortic root replacement. Contrast-free CMRA techniques avoiding side-effects of contrast media are highly desirable for serial imaging but have not been evaluated in the postoperative setup of Marfan patients. The purpose of this study was to assess the feasibility of non-contrast balanced steady-state free precession (bSSFP) magnetic resonance imaging for aortic monitoring of postoperative patients with Marfan syndrome. Methods: Sixty-four adult Marfan patients after aortic root replacement were prospectively included. Fourteen patients (22%) had a residual aortic dissection after surgical treatment of type A dissection. bSSFP imaging and CE-CMRA were performed at 1.5 Tesla. Two radiologists evaluated the images regarding image quality (1 = poor, 4 = excellent), artifacts (1 = severe, 4 = none) and aortic pathologies. Readers measured the aortic diameters at defined levels in both techniques. Statistics included observer agreement for image scoring and diameter measurements and ROC analyses for comparison of the diagnostic performance of bSSFP and CE-CMRA. Results: Both readers observed no significant differences in image quality between bSSFP and CE-CMRA and found a median image quality score of 4 for both techniques (all p > .05). No significant differences were found regarding the frequency of image artifacts in both sequences (all p > .05). Sensitivity and specificity for detection of aortic dissections was 100% for both readers and techniques. Compared to bSSFP imaging, CE-CMRA resulted in higher diameters (mean bias, 0.9 mm; p < .05). The inter-observer biases of diameter measurements were not significantly different (all p > .05), except for the distal graft anastomosis (p = .001). Using both techniques, the readers correctly identified a graft suture dehiscence with aneurysm formation requiring surgery. Conclusion: Unenhanced bSSFP CMR imaging allows for riskless aortic monitoring with high diagnostic accuracy in Marfan patients after aortic root surgery. KW - MR angiography Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-158693 VL - 19 IS - 82 ER - TY - JOUR A1 - Vargas Casanova, Yerly A1 - Rodríguez Guerra, Jorge Antonio A1 - Umaña Pérez, Yadi Adriana A1 - Leal Castro, Aura Lucía A1 - Almanzar Reina, Giovanni A1 - García Castañeda, Javier Eduardo A1 - Rivera Monroy, Zuly Jenny T1 - Antibacterial synthetic peptides derived from bovine lactoferricin exhibit cytotoxic effect against MDA-MB-468 and MDA-MB-231 breast cancer cell lines JF - Molecules N2 - Linear, dimeric, tetrameric, and cyclic peptides derived from lactoferricin B, containing the RRWQWR motif, were designed, synthesized, purified, and characterized using RP-HPLC chromatography and MALDI-TOF mass spectrometry. The antibacterial activity of the designed peptides against E. coli (ATCC 11775 and 25922) and their cytotoxic effect against MDA-MB-468 and MDA-MB-231 breast cancer cell lines were evaluated. Dimeric and tetrameric peptides showed higher antibacterial activity in both bacteria strains than linear peptides. The dimeric peptide (RRWQWR)\(_2\)K-Ahx exhibited the highest antibacterial activity against the tested bacterial strains. Furthermore, the peptides with high antibacterial activity exhibited significant cytotoxic effect against the tested breast cancer cell lines. This cytotoxic effect was fast and dependent on the peptide concentration. The tetrameric molecule containing RRWQWR motif has an optimal cytotoxic effect at a concentration of 22 µM. The evaluated dimeric and tetrameric peptides could be considered as candidates for developing new therapeutic agents against breast cancer. Polyvalence of linear sequences could be considered as a novel and versatile strategy for obtaining molecules with high anticancer activity. KW - lactoferricin B KW - E. coli KW - breast cancer KW - cytotoxic effect KW - antibacterial activity KW - synthetic peptides Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-173887 VL - 22 IS - 10 ER - TY - JOUR A1 - Vangeel, Elise Beau A1 - Pishva, Ehsan A1 - Hompes, Titia A1 - van den Hove, Daniel A1 - Lambrechts, Diether A1 - Allegaert, Karel A1 - Freson, Kathleen A1 - Izzi, Benedetta A1 - Claes, Stephan T1 - Newborn genome-wide DNA methylation in association with pregnancy anxiety reveals a potential role for \(GABBR1\) JF - Clinical Epigenetics N2 - Background: There is increasing evidence for the role of prenatal stress in shaping offspring DNA methylation and disease susceptibility. In the current study, we aimed to identify genes and pathways associated with pregnancy anxiety using a genome-wide DNA methylation approach. Methods: We selected 22 versus 23 newborns from our Prenatal Early Life Stress (PELS) cohort, exposed to the lowest or highest degree of maternal pregnancy anxiety, respectively. Cord blood genome-wide DNA methylation was assayed using the HumanMethylation450 BeadChip (HM450, n = 45) and candidate gene methylation using EpiTYPER (n = 80). Cortisol levels were measured at 2, 4, and 12 months of age to test infant stress system (re)activity. Results: Data showed ten differentially methylated regions (DMR) when comparing newborns exposed to low versus high pregnancy anxiety scores. We validated a top DMR in the GABA-B receptor subunit 1 gene (GABBR1) revealing the association with pregnancy anxiety particularly in male newborns (most significant CpG Pearson R = 0.517, p = 0.002; average methylation Pearson R = 0.332, p = 0.039). Cord blood GABBR1 methylation was associated with infant cortisol levels in response to a routine vaccination at 4 months old. Conclusions: In conclusion, our results show that pregnancy anxiety is associated with differential DNA methylation patterns in newborns and that our candidate gene GABBR1 is associated with infant hypothalamic-pituitary-adrenal axis response to a stressor. Our findings reveal a potential role for GABBR1 methylation in association with stress and provide grounds for further research. KW - DNA methylation KW - GABBR1 KW - gender differences KW - HPA axis KW - pregnancy anxiety KW - prenatal stress Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-173825 VL - 9 ER - TY - JOUR A1 - Van Steenbergen, Anne A1 - Balteau, Magali A1 - Ginion, Audrey A1 - Ferté, Laura A1 - Battault, Sylvain A1 - de Meester de Ravenstein, Christophe A1 - Balligand, Jean-Luc A1 - Daskalopoulos, Evangelos-Panagiotis A1 - Gilon, Patrick A1 - Despa, Florin A1 - Despa, Sanda A1 - Vanoverschelde, Jean-Louis A1 - Horman, Sandrine A1 - Koepsell, Hermann A1 - Berry, Gerard A1 - Hue, Louis A1 - Bertrand, Luc A1 - Beauloye, Christophe T1 - Sodium-myoinositol cotransporter-1, SMIT1, mediates the production of reactive oxygen species induced by hyperglycemia in the heart JF - Scientific Reports N2 - Hyperglycemia (HG) stimulates the production of reactive oxygen species in the heart through activation of NADPH oxidase 2 (NOX2). This production is independent of glucose metabolism but requires sodium/glucose cotransporters (SGLT). Seven SGLT isoforms (SGLT1 to 6 and sodium-myoinositol cotransporter-1, SMIT1) are known, although their expression and function in the heart remain elusive. We investigated these 7 isoforms and found that only SGLT1 and SMIT1 were expressed in mouse, rat and human hearts. In cardiomyocytes, galactose (transported through SGLT1) did not activate NOX2. Accordingly, SGLT1 deficiency did not prevent HG-induced NOX2 activation, ruling it out in the cellular response to HG. In contrast, myo-inositol (transported through SMIT1) reproduced the toxic effects of HG. SMIT1 overexpression exacerbated glucotoxicity and sensitized cardiomyocytes to HG, whereas its deletion prevented HG-induced NOX2 activation. In conclusion, our results show that heart SMIT1 senses HG and triggers NOX2 activation. This could participate in the redox signaling in hyperglycemic heart and contribute to the pathophysiology of diabetic cardiomyopathy. KW - hyperglycemia KW - Sodium-myoinositol cotransporter-1 (SMIT1) KW - glucose metabolism KW - heart KW - NADPH oxidase 2 (NOX2) KW - sodium/glucose cotransporters (SGLT) KW - cardiomyocytes Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-180891 VL - 7 ER - TY - JOUR A1 - Uri, Anna A1 - Werner, Sandra A1 - Lühder, Fred A1 - Hünig, Thomas A1 - Kerkau, Thomas A1 - Beyersdorf, Niklas T1 - Protection of mice from acute graft-versus-host disease requires CD28 co-stimulation on donor CD4\(^{+}\) Foxp3\(^{+}\) regulatory T Cells JF - Frontiers in Immunology N2 - Acute graft-versus-host disease (aGvHD) is a major cause of morbidity and mortality after allogeneic hematopoietic stem cell plus T cell transplantation (allo-HSCT). In this study, we investigated the requirement for CD28 co-stimulation of donor CD4\(^{+}\) conventional (CD4\(^{+}\)CD25\(^{-}\)Foxp3\(^{-}\), Tconv) and regulatory (CD4\(^{+}\)CD25\(^{+}\)Foxp3\(^{+}\), Treg) T cells in aGvHD using tamoxifen-inducible CD28 knockout (iCD28KO) or wild-type (wt) littermates as donors of CD4\(^{+}\) Tconv and Treg. In the highly inflammatory C57BL/6 into BALB/c allo-HSCT transplantation model, CD28 depletion on donor CD4\(^{+}\) Tconv reduced clinical signs of aGvHD, but did not significantly prolong survival of the recipient mice. Selective depletion of CD28 on donor Treg did not abrogate protection of recipient mice from aGvHD until about day 20 after allo-HSCT. Later, however, the pool of CD28-depleted Treg drastically declined as compared to wt Treg. Consequently, only wt, but not CD28-deficient, Treg were able to continuously suppress aGvHD and induce long-term survival of the recipient mice. To our knowledge, this is the first study that specifically evaluates the impact of CD28 expression on donor Treg in aGvHD. Moreover, the delayed kinetics of aGvHD lethality after transplantation of iCD28KO Treg provides a novel animal model for similar disease courses found in patients after allo-HSCT. KW - co-stimulation, KW - inducible deletion KW - regulatory T cells KW - acute graft-versus-host disease KW - CD28 Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-158469 VL - 8 IS - 721 ER - TY - JOUR A1 - Ullmann, Tobias A1 - Banks, Sarah N. A1 - Schmitt, Andreas A1 - Jagdhuber, Thomas T1 - Scattering characteristics of X-, C- and L-Band PolSAR data examined for the tundra environment of the Tuktoyaktuk Peninsula, Canada JF - Applied Sciences N2 - In this study, polarimetric Synthetic Aperture Radar (PolSAR) data at X-, C- and L-Bands, acquired by the satellites: TerraSAR-X (2011), Radarsat-2 (2011), ALOS (2010) and ALOS-2 (2016), were used to characterize the tundra land cover of a test site located close to the town of Tuktoyaktuk, NWT, Canada. Using available in situ ground data collected in 2010 and 2012, we investigate PolSAR scattering characteristics of common tundra land cover classes at X-, C- and L-Bands. Several decomposition features of quad-, co-, and cross-polarized data were compared, the correlation between them was investigated, and the class separability offered by their different feature spaces was analyzed. Certain PolSAR features at each wavelength were sensitive to the land cover and exhibited distinct scattering characteristics. Use of shorter wavelength imagery (X and C) was beneficial for the characterization of wetland and tundra vegetation, while L-Band data highlighted differences of the bare ground classes better. The Kennaugh Matrix decomposition applied in this study provided a unified framework to store, process, and analyze all data consistently, and the matrix offered a favorable feature space for class separation. Of all elements of the quad-polarized Kennaugh Matrix, the intensity based elements K0, K1, K2, K3 and K4 were found to be most valuable for class discrimination. These elements contributed to better class separation as indicated by an increase of the separability metrics squared Jefferys Matusita Distance and Transformed Divergence. The increase in separability was up to 57% for Radarsat-2 and up to 18% for ALOS-2 data. KW - decomposition KW - arctic KW - PolSAR KW - dual polarimetry KW - quad polarimetry KW - TerraSAR-X KW - Radarsat-2 KW - ALOS KW - ALOS-2 KW - tundra Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-158362 VL - 7 IS - 6 ER - TY - JOUR A1 - Tymoshenko, Y. V. A1 - Onykiienko, Y. A. A1 - Müller, T. A1 - Thomale, R. A1 - Rachel, S. A1 - Cameron, A. S. A1 - Portnichenko, P. Y. A1 - Efremov, D. V. A1 - Tsurkan, V. A1 - Abernathy, D. L. A1 - Ollivier, J. A1 - Schneidewind, A. A1 - Piovano, A. A1 - Felea, V. A1 - Loidl, A. A1 - Inosov, D. S. T1 - Pseudo-Goldstone magnons in the frustrated \(S=3/2\) Heisenberg helimagnet \(ZnCr_2Se_4\) with a pyrochlore magnetic sublattice JF - Physical Review X N2 - Low-energy spin excitations in any long-range ordered magnetic system in the absence of magnetocrystalline anisotropy are gapless Goldstone modes emanating from the ordering wave vectors. In helimagnets, these modes hybridize into the so-called helimagnon excitations. Here we employ neutron spectroscopy supported by theoretical calculations to investigate the magnetic excitation spectrum of the isotropic Heisenberg helimagnet \({ZnCr_2Se_4}\) with a cubic spinel structure, in which spin\(-3/2\) magnetic \({Cr^{3+}}\) ions are arranged in a geometrically frustrated pyrochlore sublattice. Apart from the conventional Goldstone mode emanating from the \((0~ 0~ {q_h})\) ordering vector, low-energy magnetic excitations in the single-domain proper-screw spiral phase show soft helimagnon modes with a small energy gap of \({∼0.17~ meV}\), emerging from two orthogonal wave vectors \(({q_h}~ 0~ 0)\) and \({(0~ {q_h}~ 0)}\) where no magnetic Bragg peaks are present. We term them pseudo-Goldstone magnons, as they appear gapless within linear spinwave theory and only acquire a finite gap due to higher-order quantum-fluctuation corrections. Our results are likely universal for a broad class of symmetric helimagnets, opening up a new way of studying weak magnon-magnon interactions with accessible spectroscopic methods. KW - physics KW - spin waves KW - helimagnets KW - inelastic neutron scattering Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-172770 VL - 7 IS - 4 ER - TY - JOUR A1 - Tuan, Dinh Van A1 - Scharf, Benedikt A1 - Žutič, Igor A1 - Dery, Hanan T1 - Marrying excitons and plasmons in monolayer transition-metal dichalcogenides JF - Physical Review X N2 - Just as photons are the quanta of light, plasmons are the quanta of orchestrated charge-density oscillations in conducting media. Plasmon phenomena in normal metals, superconductors, and doped semiconductors are often driven by long-wavelength Coulomb interactions. However, in crystals whose Fermi surface is comprised of disconnected pockets in the Brillouin zone, collective electron excitations can also attain a shortwave component when electrons transition between these pockets. In this work, we show that the band structure of monolayer transition-metal dichalcogenides gives rise to an intriguing mechanism through which shortwave plasmons are paired up with excitons. The coupling elucidates the origin for the optical sideband that is observed repeatedly in monolayers of WSe\(_2\) and WS\(_2\) but not understood. The theory makes it clear why exciton-plasmon coupling has the right conditions to manifest itself distinctly only in the optical spectra of electron-doped tungsten-based monolayers. KW - physics KW - excitons KW - plasmons KW - semiconductors KW - spintronics KW - valleytronics Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-173030 VL - 7 IS - 4 ER - TY - JOUR A1 - Tsoneva, Desislava A1 - Minev, Boris A1 - Frentzen, Alexa A1 - Zhang, Qian A1 - Wege, Anja K. A1 - Szalay, Aladar A. T1 - Humanized Mice with Subcutaneous Human Solid Tumors for Immune Response Analysis of Vaccinia Virus-Mediated Oncolysis JF - Molecular Therapy Oncolytics N2 - Oncolytic vaccinia virus (VACV) therapy is an alternative cancer treatment modality that mediates targeted tumor destruction through a tumor-selective replication and an induction of anti-tumor immunity. We developed a humanized tumor mouse model with subcutaneous human tumors to analyze the interactions of VACV with the developing tumors and human immune system. A successful systemic reconstitution with human immune cells including functional T cells as well as development of tumors infiltrated with human T and natural killer (NK) cells was observed. We also demonstrated successful in vivo colonization of such tumors with systemically administered VACVs. Further, a new recombinant GLV-1h376 VACV encoding for a secreted human CTLA4-blocking single-chain antibody (CTLA4 scAb) was tested. Surprisingly, although proving CTLA4 scAb’s in vitro binding ability and functionality in cell culture, beside the significant increase of CD56\(^{bright}\) NK cell subset, GLV-1h376 was not able to increase cytotoxic T or overall NK cell levels at the tumor site. Importantly, the virus-encoded β-glucuronidase as a measure of viral titer and CTLA4 scAb amount was demonstrated. Therefore, studies in our “patient-like” humanized tumor mouse model allow the exploration of newly designed therapy strategies considering the complex relationships between the developing tumor, the oncolytic virus, and the human immune system. KW - humanized tumor KW - mouse model KW - subcutaneous human tumors KW - Oncolytic vaccinia virus Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-170786 VL - 5 ER - TY - THES A1 - Tsoneva, Desislava T1 - Humanized mouse model: a system to study the interactions of human immune system with vaccinia virus-infected human tumors in mice T1 - Humanisiertes Mausmodell: ein System, um die Wechselwirkungen des menschlichen Immunsystems mit Vaccinia-Virus-infizierten humanen Tumoren in Mäusen zu untersuchen N2 - Ein vielversprechender neuer Ansatz zur Behandlung von Krebs beim Menschen ist die Verwendung von onkolytischen Viren, die einen Tumor-spezifischen Tropismus aufweisen. Einer der Top-Kandidaten in diesem Bereich ist das onkolytische Vaccinia Virus (VACV), das bereits vielversprechende Ergebnisse in Tierversuchen und in klinischen Studien gezeigt hat. Aber die von den in vivo in tierischen Modellen erhaltenen Resultate könnten ungenaue Informationen wegen der anatomischen und physiologischen Unterschiede zwischen den Spezies liefern. Andererseits sind Studien in Menschen aufgrund ethischer Erwägungen und potenzieller Toxizität nur limitiert möglich. Die zahlreichen Einschränkungen und Risiken, die mit den Humanstudien verbunden sind, könnten mit der Verwendung eines humanisierten Mausmodells vermieden werden. Die LIVP-1.1.1, GLV-2b372, GLV-1h68, GLV-1h375, GLV-1h376 and GLV-1h377 VACV Stämmen wurden von der Genelux Corporation zur Verfügung gestellt. GLV-2b372 wurde durch Einfügen der TurboFP635 Expressionskassette in den J2R Genlocus des parentalen LIVP-1.1.1-Stammes konstruiert. GLV-1h375, -1h376 and -1h377 kodiert das Gen für den menschlichen CTLA4-blockierenden Einzelketten-Antikörper (CTLA4 scAb). Befunde aus Replikations- and Zytotoxizitätsstudien zeigten, dass alle sechs Viren Tumorzellen infizieren, sich in ihnen replizieren und sie in Zellkultur schließlich ebenso dosis- und zeitabhängig effizient abtöten konnten. CTLA4 scAb und β-Glucuronidase (GusA) Expression sowie Virus Titer in GLV-1h376-infizierten A549-Zellen wurde anhand von ELISA-, β-Glucuronidase- and Standard Plaque-Assays bestimmt. Hierbei zeigte sich eine ausgezeichnete Korrelation mit Korrelationskoeffizienten R2>0.9806. Der durch das GLV-1h376 kodierte CTLA4 scAb wurde erfolgreich aus Überständen von infizierten CV-1-Zellen gereinigt. CTLA4 scAb hat eine hohe in-vitro-Affinität zu seinem menschlichen CTLA4-Zielmolekül sowie abwesende Kreuzreaktivität gegenüber murine CTLA4 gezeigt. CTLA4 scAb Funktionalität wurde in Jurkat-Zellen bestätigt. LIVP-1.1.1, GLV-2b372, GLV-1h68 und GLV-1h376 wurden auch in nicht-tumorösen und/oder tumortragenden humanisierten Mäusen getestet. Zunächst wurde gezeigt, dass die Injektion von menschlichen CD34+ Stammzellen in die Leber von vorkonditionierten neugeborenen NSG Mäusen zu einer erfolgreichen systemische Rekonstitution mit menschlichen Immunzellen geführt hat. CD19+-B-Zellen, CD4+- und CD8+-CD3+-T-Zellen, NKp46+CD56- und NKp46+CD56+-NK-Zellen sowie CD33+-myeloischen Zellen wurden detektiert. Die Mehrheit der nachgewisenen humanen hämatopoetischen Zellen im Mäuseblut in den ersten Wochen nach der Humanisierung waren CD19+-B-Zellen, und nur ein kleiner Teil waren CD3+-T-Zellen. Mit der Zeit wurde eine signifikante Veränderung in CD19+/CD3+-Verhältnis beobachtet, die parallel zur Abnahme der B-Zellen und einem Anstieg der T-Zellen kam. Die Implantation von A549-Zellen unter die Haut dieser Mäuse führte zu einem progressiven Tumorwachstum. Bildgebende Verfahren zur Detektion von Virus-vermittelter TurboFP635- und GFP-Expression, Standard Plaque Assays sowie immunohistochemische Analysen bestätigten die erfolgreiche Invasion der Viren in die subkutanen Tumoren. Die humane CD45+-Zellpopulation in Tumoren wurde hauptsächlich durch NKp46+CD56bright-NK-Zellen und einen hohen Anteil von aktivierten CD4+- und zytotoxische CD8+-T-Zellen dargestellt. Es wurden jedoch keine signifikanten Unterschiede zwischen den Kontroll- und LIVP-1.1.1-infizierten Tumoren beobachtet, was darauf hindeutete, dass die Rekrutierung von NK- und aktivierten T-Zellen, mehr Tumorgewebe-spezifisch als Virus-abhängig waren. Die GLV-1h376-vermittelten CTLA4 scAb-Expression in den infizierten Tumoren war ebenfalls nicht in der Lage, die Aktivierung von Tumor-infiltrierenden T-Zellen im Vergleich zur Kontrolle und GLV-1h68-behandelten Mäusen, signifikant zu erhöhen. ELISA-, β-Glucuronidase- and Standard Plaque-Assays zeigten eine eindeutige Korrelation mit den Korrelationskoeffizienten R2>0,9454 zwischen CTLA4 scAb- und GusA-Konzentrationen und Virus Titer in Tumorproben von GLV-1h376-behandelten Mäusen. T-Zellen, die aus der Milz dieser Tumor-tragenden Mäuse isoliert wurden, waren funktionell und konnten erfolgreich mit Beads aktiviert werden. Mehr CD25+ und IFN-ɣ+ T-Zellen wurden in der GLV-1h376-Gruppe gefunden, wahrscheinlich aufgrund der CTLA4-Blockade durch die Virus-vermittelte CTLA4 scAb-Expression in den Mäusen. Außerdem wurde eine höhere Konzentration von IL-2 in dem Kulturüberstand von diesen Splenozyten im Vergleich zu Kontrollproben nachgewiesen. Im Gegensatz zu der Aktivierung mit Beads konnten T-Zellen von allen drei Maus-Gruppen nicht durch A549 Tumorzellen ex vivo aktiviert werden. Unser Mausmodell hat den besonderen Vorteil, dass sich Tumoren unter der Haut der humanisierten Mäuse entwickeln, was eine genaue Überwachung des Tumorwachstums und Auswertung der onkolytischen Virotherapie ermöglicht. N2 - A promising new approach for the treatment of human cancer is the use of oncolytic viruses, which exhibit tumor tropism. One of the top candidates in this area is the oncolytic vaccinia virus (VACV), which has already shown promising results in animal studies and in clinical trials. However, due to discrepancies in both innate and adaptive immunity between mice and men the evaluation of the vaccinia virus’ interactions with the host immune system in mice are not fully conclusive of what is actually happening in human cancer patients after systemic administration of vaccinia virus. Also, ethical and legal concerns as well as risk of potential toxicity limit research involving human patients. Therefore, a good in vivo model for testing interactions between vaccinia virus and human immune cells, avoiding the numerous limitations and risks associated with human studies, could be a humanized mouse model. LIVP-1.1.1, GLV-2b372, GLV-1h68, GLV-1h375, GLV-1h376 and GLV-1h377 VACVs were provided by Genelux Corporation. GLV-2b372 was constructed by inserting TurboFP635 expression cassette into the J2R locus of the parental LIVP-1.1.1. GLV-1h375, -1h376 and -1h377 VACVs encode the human CTLA4-blocking single-chain antibody (CTLA4 scAb). Performed replication and cytotoxicity assays demonstrated that all six viruses were able to infect, replicate in and kill human tumor cells in virus-dose- and time-dependent fashion. CTLA4 scAb and β-glucuronidase (GusA) expression as well as viral titers in GLV-1h376-infected cells were analyzed by ELISA, β-glucuronidase assay and standard plaque assay, respectively, and compared. An excellent correlation with correlation coefficients R2>0.9806 were observed. GLV-1h376-encoded CTLA4 scAb was successfully purified from supernatants of infected CV-1 cells and demonstrated in vitro affinity to its human CTLA4 target and lack of cross-reactivity to mouse CTLA4. CTLA4 scAb functionality was confirmed in Jurkat cells. LIVP-1.1.1, GLV-2b372, GLV-1h68 and GLV-1h376 were next studied in non-tumorous and/or tumor-bearing humanized mice. It was demonstrated that injection of human CD34+ stem cells into the liver of preconditioned newborn NSG mice let to a successful systemic reconstitution with human immune cells. CD19+ B cells, CD4 and CD8 single positive CD3+ T cell, NKp46+CD56- and NKp46+CD56+ NK cells as well as CD33+ myeloid cells developed. At early time points after engraftment, majority of the human hematopoietic cells detected in the mouse blood were CD19+ B cells and only a small portion were CD3+ T cells. With time a significant change in CD19+/CD3+ ratio was reported with a decrease of B cells and an increase of T cells. Implantation of A549 cells under the skin of those humanized NSG mice resulted in a progressive tumor growth, described for the first time in this thesis. Successful colonization of subcutaneous A549 tumors with VACVs was visualized and demonstrated by detection of virus-mediated TurboFP635 and GFP expression as well as by standard plaque assay and immunohistochemistry. The human CD45+ cell population in tumors was represented mainly by NKp46+CD56bright NK cells and a large portion of activated CD4+ and cytotoxic CD8+ T cells. However, no significant differences were observed between control and LIVP-1.1.1-infected tumors, suggesting that the recruitment of NK and activated T cells were more tumor tissue specific than virus-dependent. Unfortunately, virus-mediated CTLA4 scAb expression in the GLV-1h376-infected tumors was also not able to significantly increase activation of T cells compared to control and GLV-1h68-treated mice. Importantly, ELISA, β-glucuronidase and standard plaque assays showed an excellent correlation with correlation coefficients R2>0.9454 between CTLA4 scAb, GusA concentrations and viral titers in tumor samples from those GLV-1h376 treated mice. T cells isolated from the spleens of such control or GLV-1h68- or -1h376-treated A549 tumor-bearing mice were functional and could successfully be activated with human T cells activation beads. However, although no significant difference was observed between the three mouse groups, a slightly higher percentage of the GLV-1h376-treated mice-derived T cells were expressing CD25 and producing IFN-ɣ after ex vivo activation, probably due to the CTLA4 blockade by the virus-encoded CTLA4 scAb in the GLV-1h376-treated mice. Also, slightly higher levels of IL-2 were detected in the culture supernatant of those splenocytes compared to control samples. In contrast, T cells from all three mouse groups were not able be activated by A549 tumor cells ex vivo. Our model has the specific advantage that tumors develop under the skin of the humanized mice, which allows accurate monitoring of the tumor growth and evaluation of the oncolytic virotherapy. Therefore it is important to choose the right approaches for its further improvement. KW - Vaccinia virus KW - cancer KW - vaccinia virus KW - humanized mice Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-118983 ER - TY - JOUR A1 - Tshitenge, Dieudonné Tshitenge A1 - Feineis, Doris A1 - Mudogo, Virima A1 - Kaiser, Marcel A1 - Brun, Reto A1 - Bringmann, Gerhard T1 - Antiplasmodial Ealapasamines A-C,'Mixed' Naphthylisoquinoline Dimers from the Central African Liana Ancistrocladus ealaensis JF - Scientific Reports N2 - Three unusual heterodimeric naphthylisoquinoline alkaloids, named ealapasamines A-C (1–3), were isolated from the leaves of the tropical plant Ancistrocladus ealaensis J. Léonard. These ‘mixed’, constitutionally unsymmetric dimers are the first stereochemically fully assigned cross-coupling products of a 5,8′- and a 7,8′-coupled naphthylisoquinoline linked via C-6′ in both naphthalene portions. So far, only two other West and Central Ancistrocladus species were known to produce dimers with a central 6,6″-axis, yet, in contrast to the ealapasamines, usually consisting of two 5,8′-coupled monomers, like e.g., in michellamine B. The new dimers 1–3 contain six elements of chirality, four stereogenic centers and the two outer axes, while the central biaryl axis is configurationally unstable. The elucidation of the complete stereostructures of the ealapasamines was achieved by the interplay of spectroscopic methods including HRESIMS, 1D and 2D NMR (in particular ROESY measurements), in combination with chemical (oxidative degradation) and chiroptical (electronic circular dichroism) investigations. The ealapasamines A-C display high antiplasmodial activities with excellent half-maximum inhibition concentration values in the low nanomolar range. KW - structure elucidation KW - stereochemistry KW - Ancistrocladus ealaensis KW - dimers Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-170645 VL - 7 IS - 5767 ER - TY - JOUR A1 - Tsamadou, Chrysanthi A1 - Fürst, Daniel A1 - Vucinic, Vladan A1 - Bunjes, Donald A1 - Neuchel, Christine A1 - Mytilineos, Daphne A1 - Gramatzki, Martin A1 - Arnold, Renate A1 - Wagner, Eva Maria A1 - Einsele, Hermann A1 - Müller, Carlheinz A1 - Schrezenmeier, Hubert A1 - Mytilineos, Joannis T1 - Human leukocyte antigen-E mismatch is associated with better hematopoietic stem cell transplantation outcome in acute leukemia patients JF - Haematologica N2 - The immunomodulatory role of human leukocyte antigen (HLA)-E in hematopoietic stem cell transplantation (HSCT) has not been extensively investigated. To this end, we genotyped 509 10/10 HLA unrelated transplant pairs for HLA-E, in order to study the effect of HLA-E as a natural killer (NK)-alloreactivity mediator on HSCT outcome in an acute leukemia (AL) setting. Overall survival (OS), disease free survival (DFS), relapse incidence (RI) and non-relapse mortality (NRM) were set as endpoints. Analysis of our data revealed a significant correlation between HLA-E mismatch and improved HSCT outcome, as shown by both univariate (53% vs. 38%, P=0.002, 5-year OS) and multivariate (hazard ratio (HR)=0.63, confidence interval (CI) 95%=0.48–0.83, P=0.001) analyses. Further subgroup analysis demonstrated that the positive effect of HLA-E mismatch was significant and pronounced in advanced disease patients (n=120) (5-year OS: 50% vs. 18%, P=0.005; HR=0.40, CI 95%=0.22–0.72, P=0.002; results from univariate and multivariate analyses, respectively). The study herein is the first to report an association between HLA-E incompatibility and improved post–transplant prognosis in AL patients who have undergone matched unrelated HSCT. Combined NK and T cell HLA-E-mediated mechanisms may account for the better outcomes observed. Notwithstanding the necessity for in vitro and confirmational studies, our findings highlight the clinical relevance of HLA-E matching and strongly support prospective HLA-E screening upon donor selection for matched AL unrelated HSCTs. KW - medicine KW - acute leukemia (AL) KW - hematopoietic stem cell transplantation (HSCT) KW - human leukocyte antigen-E (HLA-E) KW - HLA-E matching KW - HSTC outcome Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-173325 VL - 102 IS - 11 ER - TY - JOUR A1 - Triphan, Simon M. F. A1 - Jobst, Bertram J. A1 - Anjorin, Angela A1 - Sedlaczek, Oliver A1 - Wolf, Ursula A1 - Terekhov, Maxim A1 - Hoffmann, Christian A1 - Ley, Sebastian A1 - Düber, Christoph A1 - Biederer, Jürgen A1 - Kauczor, Hans-Ulrich A1 - Jakob, Peter M. A1 - Wielpütz, Mark O. T1 - Reproducibility and comparison of oxygen-enhanced T\(_1\) quantification in COPD and asthma patients JF - PLoS ONE N2 - T\(_1\) maps have been shown to yield useful diagnostic information on lung function in patients with chronic obstructive pulmonary disease (COPD) and asthma, both for native T\(_1\) and ΔT\(_1\), the relative reduction while breathing pure oxygen. As parameter quantification is particularly interesting for longitudinal studies, the purpose of this work was both to examine the reproducibility of lung T\(_1\) mapping and to compare T\(_1\) found in COPD and asthma patients using IRSnapShotFLASH embedded in a full MRI protocol. 12 asthma and 12 COPD patients (site 1) and further 15 COPD patients (site 2) were examined on two consecutive days. In each patient, T\(_1\) maps were acquired in 8 single breath-hold slices, breathing first room air, then pure oxygen. Maps were partitioned into 12 regions each to calculate average values. In asthma patients, the average T\(_{1,RA}\) = 1206ms (room air) was reduced to T\(_{1,O2}\) = 1141ms under oxygen conditions (ΔT\(_1\) = 5.3%, p < 5⋅10\(^{−4})\), while in COPD patients both native T\(_{1,RA}\) = 1125ms was significantly shorter (p < 10\(^{−3})\) and the relative reduction to T\(_{1,O2}\) = 1081ms on average ΔT\(_1\) = 4.2%(p < 10\(^{−5}\)). On the second day, with T\(_{1,RA}\) = 1186ms in asthma and T\(_{1,RA}\) = 1097ms in COPD, observed values were slightly shorter on average in all patient groups. ΔT\(_1\) reduction was the least repeatable parameter and varied from day to day by up to 23% in individual asthma and 30% in COPD patients. While for both patient groups T\(_1\) was below the values reported for healthy subjects, the T\(_1\) and ΔT\(_1\) found in asthmatics lies between that of the COPD group and reported values for healthy subjects, suggesting a higher blood volume fraction and better ventilation. However, it could be demonstrated that lung T\(_1\) quantification is subject to notable inter-examination variability, which here can be attributed both to remaining contrast agent from the previous day and the increased dependency of lung T\(_1\) on perfusion and thus current lung state. KW - Medicine KW - Chronic obstrusive pulmonary disease KW - Asthma KW - Oxygen KW - Magnetic resonance imaging KW - Breathing KW - Pulmonary imaging KW - Protons KW - Diagnostic medicine Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-171833 VL - 12 IS - 2 ER - TY - JOUR A1 - Tiffe, Theresa A1 - Wagner, Martin A1 - Rücker, Viktoria A1 - Morbach, Caroline A1 - Gelbrich, Götz A1 - Störk, Stefan A1 - Heuschmann, Peter U. T1 - Control of cardiovascular risk factors and its determinants in the general population – findings from the STAAB cohort study JF - BMC Cardiovascular Disorders N2 - Background: While data from primary care suggest an insufficient control of vascular risk factors, little is known about vascular risk factor control in the general population. We therefore aimed to investigate the adoption of adequate risk factor control and its determinants in the general population free of cardiovascular disease (CVD). Methods: Data from the Characteristics and Course of Heart Failure Stages A-B and Determinants of Progression (STAAB) Cohort Study, a population-based study of inhabitants aged 30 to 79 years from the general population of Würzburg (Germany), were used. Proportions of participants without established CVD meeting targets for risk factor control recommended by 2016 ESC guideline were identified. Determinants of the accumulation of insufficiently controlled vascular risk factors (three or more) were assessed. Results: Between December 2013 and April 2015, 1379 participants without CVD were included; mean age was 53.1 ± 11.9 years and 52.9% were female; 30.8% were physically inactive, 55.2% overweight, 19.3% current smokers. Hypertension, dyslipidemia, and diabetes mellitus were prevalent in 31.8%, 57.6%, and 3.9%, respectively. Treatment goals were not reached despite medication in 52.7% of hypertensive, in 37.3% of hyperlipidemic and in 44.0% of diabetic subjects. Insufficiently controlled risk was associated with male sex (OR 1.94, 95%CI 1.44–2.61), higher age (OR for 30–39 years vs. 70–79 years 4.01, 95%CI 1.94–8.31) and lower level of education (OR for primary vs. tertiary 2.15, 95%CI 1.48–3.11). Conclusions: In the general population, prevalence of vascular risk factors was high. We found insufficient identification and control of vascular risk factors and a considerable potential to improve adherence to cardiovascular guidelines for primary prevention. Further studies are needed to identify and overcome patient- and physician-related barriers impeding successful control of vascular risk factors in the general population. KW - population-based study KW - prevalence KW - risk factor control KW - guideline adherence KW - primary prevention Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-159391 VL - 17 IS - 276 ER - TY - THES A1 - Then, Patrick T1 - Waveguide-based single molecule detection in flow T1 - Wellenleiter-basierte Einzelmoleküldetektion in Strömungen N2 - In this work fluorescence-based single molecule detection at low concetration is investigated, with an emphasis on the usage of active transport and waveguides. Active transport allows to overcome the limits of diffusion-based systems in terms of the lowest detectable threshold of concentration. The effect of flow in single molecule experiments is investigated and a theoretical model is derived for laminar flow. Waveguides on the other hand promise compact detection schemes and show great potential for their possible integration into lab-on-a-chip applications. Their properties in single molecule experiments are analyzed with help of a method based on the reciprocity theorem of electromagnetic theory. N2 - Diese Arbeit untersucht fluoreszenzbasierte Einzelmoleküldetektion bei niedrigen Konzentrationen, mit einem Fokus auf den Einsatz von aktivem Transport und Wellenleitern. Aktiver Transport ermöglicht es, Limitierungen von diffusionsbasierten Systemen im Hinblick auf die niedrigste erreichbare Konzentration zu überwinden. Der Einfluss von Strömungen auf Einzelmolekülexperimente wird untersucht und ein theoretisches Modell für laminare Strömungen hergeleitet. Wellenleiter hingegen versprechen kompakte Detektorsysteme und zeigen beträchtliches Potential für eine mögliche Integration in lab-on-a-chip Anwendungen. Ihre Eigenschaften in Einzelmolekülexperimenten werden mithilfe einer auf dem Reziprozitätstheorem aus der elektromagnetischen Theorie basierenden Methode analysiert. KW - Optik KW - physics KW - optics KW - waveguides Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-140548 ER - TY - THES A1 - Terveer, Nils T1 - Springs and Parachutes - Development and Characterization of Novel Formulations for Poorly Water-Soluble Drugs T1 - Sprungfedern und Fallschirme - Entwicklung und Charakterisierung neuer Formulierungen für schlecht wasserlösliche Wirkstoffe N2 - Successful formulation development of novel, particularly organic APIs of low molecular weight as candidates for ground-breaking pharmaceutical products is a major challenge for the pharmaceutical industry because of the poor aqueous solubility of most of these compounds. The hit identification strategies of drug development in use today apply high throughput screening techniques for the investigation of thousands of substances. This approach led to a systematical increase in molecular weight and lipophilicity and a decrease of water solubility of lead compounds reaching market access. The high lipophilicity causes an excellent permeability of the compounds which favours the absorption process from the small intestine, but it causes a decrease of water-solubility. It becomes evident that an adequate aqueous solubility is necessary for absorption of the API from the gastrointestinal fluids into the systemic circulation and hence for efficacy of the pharmaceutical product. Only an dissolved API is getting absorbed and becomes efficacious. The precipitated proportion is resigned directly. Therefore, the development of an individual formulation aligning the physicochemical characteristics is necessary for every API to produce supersaturated solutions in the small intestine and to reach an adequate bioavailability after absorption into the systemic circulation. In this thesis a specific formulation development was investigated for two exemplary poorly water-soluble APIs to replace the empirical approach often used today. The basic tyrosine-kinase inhibitor imatinib and six different acetylated amino acids were transferred into ILs. As compared to the free base and the mesylate salt, which is marketed by Novartis AG as Gleevec®, the dissolution rate as well as the supersaturation time was increased significantly. By changing the mesylate anion with its potential genotoxic risks, the total toxicity of the drug product could be decreased. The amorphous ILs proved adequate stability under forcing conditions and there was no recrystallization of the free base observed. The amorphous character of the ILs caused an increased amount of water vapour sorption which can be compensated by special packaging materials. Taken together, the presentation of imatinib as an IL is intended for oral administration as a tablet and can cause a reduction of dose because of the increased solubility. Therefore, the occurrence of side effects can be reduced as compared to Gleevec®. If there is actually an increased bioavailability to observe, has to be proved by the execution of animal trials. The novel NOX inhibitor VAS3947 is intended for the treatment of endothelial dysfunctions causing diseases like heart failure and stroke. The compounds poor aqueous solubility hindered further clinical development so far and make the drug candidate to remain in a very early stage of the drug development process. Therefore, different formulation concepts were evaluated in this study: An amorphous solid dispersion prepared from VAS3947 and Eudragit® L100 by means of spray drying was able to increase the dissolution rate and solubility of the compound significantly, but with the accomplished kinetic solubility being in the low µM range it is not possible to reach therapeutic plasma concentrations. In contrast, the incorporation into cyclodextrins resulted in an 760-fold increased solubility. Different cyclodextrins were evaluated. Especially the lipophilic derivatives of the β-cyclodextrin showed to be the most adequate excipients. The incorporation of the API into the cyclodextrin cavity was proved by means of NMR spectroscopy. Additionally, a formulation of VAS3947 and hydroxypropyl-β-cyclodextrin was prepared. This formulation is intended for the intravenous application during animal trials, which have to be conducted to get to know the pharmacokinetics of VAS3947. This formulation reached a concentration of 1 mg/mL spending striking protection of VAS3947 against degradation. Presentation of VAS3947 as a microemulsion system led also to increase the aqueous solubility of the compound, but not in the same extent as the cyclodextrin formulation. Beside the formulation development a physicochemical characterization was performed to get to know important parameters such as log P and pKa values of VAS3947. An HPLC method was developed and validated to analyse the extent of solubility improvement. A major issue of the compound VAS3947 and all related triazolopyrimidine derivatives, developed by Vasopharm GmbH, is the insufficient chemical stability because of presence of a hemiaminal moiety in the chemical structure. Stability investigations and an extensive biopharmaceutical characterization confirm the hindering of further clinical development by insufficient drug stability and high cytotoxicity. Poor aqueous solubility is an additional disadvantage which can be handled by a concerted formulation development. N2 - Die erfolgreiche Formulierung von neuen, insbesondere organischen Wirkstoffen geringen Molekulargewichtes als Entwicklungskandidaten für innovative Arzneimittel stellt eine erhebliche Herausforderung für die pharmazeutische Industrie dar, weil ein Großteil dieser Substanzen ausgesprochen schlecht wasserlöslich ist. Die moderne Wirkstoffentwicklung basiert meistens auf der Zielstruktur und erfolgt unter Anwendung von Hochdurchsatzmethoden, bei denen Tausende an verschiedenen Substanzen getestet werden. Dieses Vorgehen hat in den letzten Jahrzehnten dazu geführt, dass die molare Masse und die Lipohilie derjenigen Entwicklungskandidaten, die eine Zulassung als Arzneimittel erreicht haben, kontinuierlich zugenommen haben. Durch die hohe Lipophilie weisen diese Wirkstoffe eine ausgezeichnete Permeabilität auf, die für den Absorptionsprozess aus dem Magen-Darm-Trakt notwendig ist. Jedoch geht damit gleichzeitig eine Abnahme der Wasserlöslichkeit einher. Es ist offensichtlich, dass eine ausreichendende hohe Wasserlöslichkeit die Grundvoraussetzung für die Absorption des Wirkstoffes aus dem Gastrointestinaltrakt in den systemischen Kreislauf und damit für die Wirksamkeit des Arzneimittels darstellt. Nur in Lösung befindlicher Wirkstoff kann absorbiert werden und seine Wirkung erzielen. Der ungelöste Anteil wird unverändert wieder ausgeschieden. Aus diesem Grunde ist die Entwicklung einer individuellen, an die physiko-chemischen Eigenschaften angepassten Formulierung für jeden Wirkstoff unbedingt erforderlich, um im Magen-Darm-Trakt übersättigte Lösungen zu generieren und dadurch eine ausreichende Bioverfügbarkeit zu erzielen. In dieser Arbeit wurden exemplarisch zwei schlecht lösliche Wirkstoffe ausgesucht und einer gezielten Formulierungsentwicklung unterzogen, um die bisher oft angewandte rein empirische Vorgehensweise abzulösen. Aus dem basischen Tyrosinkinase-Inhibitor Imatinib und unterschiedlichen acetylierten Aminosäuren wurden 6 verschiedene ionische Flüssigkeiten hergestellt. Im Vergleich mit der freien Base und dem Mesilat-Salz, welches die Firma Novartis AG unter dem Namen Gleevec® im Handel hat, wurden sowohl die Auflösungsrate als auch die zeitliche Dauer der Übersättigung signifikant vergrößert. Durch den Austausch des potentiell genotoxischen Mesilat-Anions gegen die acetylierten Aminosäuren konnte zusätzlich das Toxizitätsrisiko gesenkt werden. Die amorphen Formulierungen der ionische Flüssigkeiten waren unter Stressbedingungen ausreichend stabil und zeigten kein erhöhtes Risiko für eine Rekristallisation der freien Base. Die durch den amorphen Charakter gesteigerte Hygroskopizität lässt sich durch den Einsatz entsprechender Packmittel kompensieren. Generell eignet sich die Formulierung von Imatinib als ionische Flüssigkeit für die orale Applikation als Tablette und kann durch die Verbesserung der Wasserlöslichkeit zu einer Dosisreduktion beitragen, sodass weniger Nebenwirkungen auftreten als bei dem im Handel befindlichen Mesilat-Salz. Ob tatsächlich eine Verbesserung der Bioverfügbarkeit eintritt, muss noch durch Experimente im Tiermodell bestätigt werden. Der neuartige NOX-Inhibitor VAS3947 ist zur Behandlung von arteriosklerotischen Veränderungen im Gefäßendothel und damit allen verbunden Folgeerkrankungen wie zum Beispiel Herzinfarkt oder Schlaganfall von der Vasopharm GmbH entwickelt worden. Die extrem schlechte Wasserlöslichkeit hat bisher die klinische Forschung verhindert und der Wirkstoff befindet sich nach wie vor in einer sehr frühen Phase der Entwicklung. Aus diesem Grund wurden im Zuge dieser Arbeit verschiedene Formulierungskonzepte erforscht: Eine erste sprühgetrocknete, amorphe Formulierung mit dem Polymer Eudragit® L100 konnte zwar die Auflösungsrate und die Löslichkeit signifikant verbessern, allerdings kam es schnell zur Rekristallisation des Wirkstoffes und mit der erzielten kinetischen Löslichkeit im niedrigen µM Bereich ließen sich keine therapeutischen Plasmaspiegel erreichen. Durch die Herstellung einer Cyclodextrineinschlussverbindung von VAS3947 hingegen konnte die Löslichkeit um den Faktor 760 gesteigert werden. Verschiedene Cyclodextrine wurden getestet. Dabei erwiesen sich insbesondere die lipophilen Derivate des β-Cyclodextrins als geeignet. Die Einlagerung des Wirkstoffes in das Innere der Kavität wurde mittels NMR-Spektroskopie bestätigt. Zusätzlich wurde erstmals eine Formulierung von VAS3947 mit Hydroxypropyl-β-Cyclodextrin zur intravenösen Anwendung im Tiermodell für die Durchführung von geplanten Pharmakokinetikstudien hergestellt. Diese erzielte über 24 Stunden eine Löslichkeit von 1 mg/mL und schütze den Wirkstoff effektiv vor Zersetzung. Durch die Formulierung von VAS3947 als halbfeste Mikroemulsion konnte die Wasserlöslichkeit ebenfalls gesteigert werden, allerdings längst nicht in dem Maße wie durch die Cyclodextrine. Neben der Formulierungsentwicklung wurde eine physiko-chemische Charakterisierung des Wirkstoffes durchgeführt, um wichtige Parameter wie zum Beispiel die log P- und pKs-Werte einschätzen zu können. Des Weiteren wurde eine HPLC-Methode entwickelt und validiert, um die erzielte Löslichkeit quantifizieren zu können. Ein großes Problem dieses Wirkstoffes und damit aller Derivate vom Triazolopyrimidine-Typ, welche die Vasopharm GmbH in der Entwicklung hat, ist die mangelnde chemische Stabilität aufgrund einer Halbaminal-Partialstruktur im Molekül. Durchgeführte Stabilitätsuntersuchungen sowie eine umfangreiche biopharmazeutische Charakterisierung bestätigten letztendlich, dass eine weitere Entwicklung dieser Wirkstoffe aufgrund ihrer ungenügenden Stabilität und ihrer hohen Zytotoxizität nicht möglich ist. Die niedrige Wasserlöslichkeit stellt ein zusätzliches Problem dar, das sich durch eine gezielte Formulierungsentwicklung lösen lässt. KW - Springs and Parachutes KW - Formulation development KW - Poorly water soluble drugs KW - ionic liquids KW - Imatinib Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-154311 ER - TY - JOUR A1 - Temme, Sebastian A1 - Friebe, Daniela A1 - Schmidt, Timo A1 - Poschmann, Gereon A1 - Hesse, Julia A1 - Steckel, Bodo A1 - Stühler, Kai A1 - Kunz, Meik A1 - Dandekar, Thomas A1 - Ding, Zhaoping A1 - Akhyari, Payam A1 - Lichtenberg, Artur A1 - Schrader, Jürgen T1 - Genetic profiling and surface proteome analysis of human atrial stromal cells and rat ventricular epicardium-derived cells reveals novel insights into their cardiogenic potential JF - Stem Cell Research N2 - Epicardium-derived cells (EPDC) and atrial stromal cells (ASC) display cardio-regenerative potential, but the molecular details are still unexplored. Signals which induce activation, migration and differentiation of these cells are largely unknown. Here we have isolated rat ventricular EPDC and rat/human ASC and performed genetic and proteomic profiling. EPDC and ASC expressed epicardial/mesenchymal markers (WT-1, Tbx18, CD73,CD90, CD44, CD105), cardiac markers (Gata4, Tbx5, troponin T) and also contained phosphocreatine. We used cell surface biotinylation to isolate plasma membrane proteins of rEPDC and hASC, Nano-liquid chromatography with subsequent mass spectrometry and bioinformatics analysis identified 396 rat and 239 human plasma membrane proteins with 149 overlapping proteins. Functional GO-term analysis revealed several significantly enriched categories related to extracellular matrix (ECM), cell migration/differentiation, immunology or angiogenesis. We identified receptors for ephrin and growth factors (IGF, PDGF, EGF, anthrax toxin) known to be involved in cardiac repair and regeneration. Functional category enrichment identified clusters around integrins, PI3K/Akt-signaling and various cardiomyopathies. Our study indicates that EPDC and ASC have a similar molecular phenotype related to cardiac healing/regeneration. The cell surface proteome repository will help to further unravel the molecular details of their cardio-regenerative potential and their role in cardiac diseases. KW - Biology KW - Epicardium-derived cells KW - Human atrial stromal cells KW - Cell surface proteomics Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-172716 VL - 25 ER - TY - JOUR A1 - Temme, Fabian A1 - Adam, Jan A1 - Ahnen, Max L. A1 - Baack, Dominik A1 - Balbo, Matteo A1 - Bergmann, Matthias A1 - Biland, Adrian A1 - Blank, Michael A1 - Bretz, Thomas A1 - Brügge, Kai A. A1 - Buss, Jens A1 - Dmytriiev, Anton A1 - Dorner, Daniela A1 - Einecke, Sabrina A1 - Hempfling, Christina A1 - Hildebrand, Dorothee A1 - Hughes, Gareth A1 - Linhoff, Lena A1 - Mannheim, Karl A1 - Müller, Sebastian A1 - Neise, Dominik A1 - Neronov, Andrii A1 - Nöthe, Max A1 - Paravac, Aleksander A1 - Pauss, Felicitas A1 - Rhode, Wolfgang A1 - Shukla, Amit A1 - Thaele, Julia A1 - Walter, Roland T1 - Long-Term monitoring of bright blazars in the multi-GeV to TeV range with FACT JF - Galaxies N2 - Blazars like Markarian 421 or Markarian 501 are active galactic nuclei (AGN), with their jets orientated towards the observer. They are among the brightest objects in the very high energy (VHE) gamma ray regime (>100 GeV). Their emitted gamma-ray fluxes are extremely variable, with changing activity levels on timescales between minutes, months, and even years. Several questions are part of the current research, such as the question of the emission regions or the engine of the AGN and the particle acceleration. A dedicated longterm monitoring program is necessary to investigate the properties of blazars in detail. A densely sampled and unbiased light curve allows for observation of both high and low states of the sources, and the combination with multi-wavelength observation could contribute to the answer of several questions mentioned above. FACT (First G-APD Cherenkov Telescope) is the first operational telescope using silicon photomultiplier (SiPM, also known as Geigermode—Avalanche Photo Diode, G-APD) as photon detectors. SiPM have a very homogenous and stable longterm performance, and allow operation even during full moon without any filter, leading to a maximal duty cycle for an Imaging Air Cherenkov Telescope (IACT). Hence, FACT is an ideal device for such a longterm monitoring of bright blazars. A small set of sources (e.g., Markarian 421, Markarian 501, 1ES 1959+650, and 1ES 2344+51.4) is currently being monitored. In this contribution, the FACT telescope and the concept of longterm monitoring of bright blazars will be introduced. The results of the monitoring program will be shown, and the advantages of densely sampled and unbiased light curves will be discussed. KW - Imaging Air Cherenkov Telescope KW - First G-APD Cherenkov Telescope KW - very high energy gamma rays KW - long-term monitoring KW - silicon photo multiplier Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-198088 SN - 2075-4434 VL - 5 IS - 1 PB - MDPI ER - TY - JOUR A1 - Tawk, Caroline A1 - Sharan, Malvika A1 - Eulalio, Ana A1 - Vogel, Jörg T1 - A systematic analysis of the RNA-targeting potential of secreted bacterial effector proteins JF - Scientific Reports N2 - Many pathogenic bacteria utilize specialized secretion systems to deliver proteins called effectors into eukaryotic cells for manipulation of host pathways. The vast majority of known effector targets are host proteins, whereas a potential targeting of host nucleic acids remains little explored. There is only one family of effectors known to target DNA directly, and effectors binding host RNA are unknown. Here, we take a two-pronged approach to search for RNA-binding effectors, combining biocomputational prediction of RNA-binding domains (RBDs) in a newly assembled comprehensive dataset of bacterial secreted proteins, and experimental screening for RNA binding in mammalian cells. Only a small subset of effectors were predicted to carry an RBD, indicating that if RNA targeting was common, it would likely involve new types of RBDs. Our experimental evaluation of effectors with predicted RBDs further argues for a general paucity of RNA binding activities amongst bacterial effectors. We obtained evidence that PipB2 and Lpg2844, effector proteins of Salmonella and Legionella species, respectively, may harbor novel biochemical activities. Our study presenting the first systematic evaluation of the RNA-targeting potential of bacterial effectors offers a basis for discussion of whether or not host RNA is a prominent target of secreted bacterial proteins. KW - pathogens KW - bacterial secretion Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-158815 VL - 7 ER - TY - THES A1 - Tabisz, Barbara T1 - Site Directed Immobilization of BMP-2: Two Approaches for the Production of Osteoinductive Scaffolds T1 - Gerichtete Immobilisierung von BMP-2: Zwei Ansätze zur Herstellung osteogener Trägerstrukturen N2 - Bone fractures typically heal without surgical intervention. However, pathological situations exist which impede the healing process resulting in so-called non-union fractures. Such fractures are nowadays treated with scaffold material being introduced into the defect area. These scaffolds can be doped with osteogenic factors, such as bone morphogenetic protein (BMP)2. BMP2 belongs to the most osteogenic growth factors known to date. Its medical use, efficiency and safety have been approved by FDA for certain applications. Currently, BMP2 is distributed with a stabilizing scaffold, which is simply soaked with the growth factor. Due to fast release kinetics supraphysiological high doses of BMP2 are required which are causally associated with severe side effects observed in certain applications being most harmful in the area of the cervical spine. These side-effects include inflammation, swelling and breathing problems, leading to disastrous consequences or secondary surgical interventions. Since it could be shown that a retardation of BMP2 release from the scaffold resulted in superior bone forming properties in vivo, it seems obvious to further reduce this release to a minimum. This can be achieved by covalent coupling which in the past was already elaborated using mainly classical EDC/NHS chemistry. Using this technique coupling of the protein occurs non-site-directedly leading mainly to an unpredictable product outcome with variable osteogenic activities. In order to improve the reproducibility of scaffold functionalization by BMP2 we created variants one of which contains a unique unnatural amino acid substitution within the mature polypeptide sequence (BMP2-K3Plk) and another, BMP2-A2C, in which an N-terminal alanine has been substituted by cysteine. These modifications enable site-specific and covalent immobilization of BMP2 e.g. onto polymeric beads. Both proteins were expressed in E. coli, renatured and purified by cation-exchange chromatography. Both variants were extensively analyzed in terms of purity and biological activity which was tested by in vitro interaction analyses as well as in cell based assays. Both proteins could be successfully coupled to polymeric beads. The different BMP2 functionalized beads were shown to interact with the ectodomain of the type I receptor BMPR-IA in vitro indicating that the biological activity of both BMP2 variants retained upon coupling. Both functionalized beads induced osteogenic differentiation C2C12 cells but only of those cells which have been in close contact to the particular beads. This strongly indicates that the BMP2 variant are indeed covalently coupled and not just adsorbed. We claim that we have developed a system for a site-specific and covalent immobilization of BMP-2 onto solid scaffolds, potentially eliminating the necessity of high-dose scaffold loading. Since immobilized proteins are protected from removal by extracellular fluids, their activities now rely mainly on the half-life of the used scaffold and the rate of proteolytic degradation. Assuming that due to prolonged times much lower loading capacities might be required we propose that the immobilization strategy employed in this work may be further refined and optimized to replace the currently used BMP2-containing medical products. N2 - Knochenbrüche heilen typischerweise ohne die Notwendigkeit chirurgischer Eingriffe. Es gibt jedoch pathologische Situationen, in denen keine Heilung erfolgt was zur Ausbildung sogenannter non-union Frakturen führt. Solche Frakturen werden heutzutage mit Trägermaterialen versorgt, welche in die Defektzonen eingebracht werden. Diese Trägermaterialien können mit osteogen wirkenden Faktoren dotiert sein, z.B. mit bone morphogenetic protein (BMP)2. BMP2 gehört zu den am meisten osteogen wirkenden Faktoren, welche derzeit bekannt sind. Die Nutzung dieses Faktors als Medikament, wurde aufgrund seiner Effizienz und der Sicherheit in der Anwendung von der FDA für bestimmte Anwendungsgebiete zugelassen. Derzeit wird BMP2 mit einer stabilisierenden Trägerstruktur vertrieben, wobei diese einfach mit dem Wachstumsfaktor getränkt wird. Aufgrund schneller Freisetzungskinetiken werden unphysiologisch hohe Mengen von BMP2 gebraucht, welche in Beziehung zu extremen Nebeneffekten gebracht werden, die bei verschiedenen Anwendungen, speziell im Wirbelsäulenbereich, beobachtet werden konnten. Die Nebeneffekte umfassen Endzündungen, einhergehend mit Schwellungen und Atemprobleme, welche weitere Operationen nach sich ziehen können. Da bereits gezeigt werden konnte, dass eine Verzögerung der BMP2 Freisetzung aus der Trägerstruktur eine Verbesserung der osteogenen Wirkung mit sich bringt erscheint es offensichtlich, diese Freisetzung auf ein Minimum zu reduzieren. Dies kann durch kovalente Anbindung erreicht werden, was bereits in der Vergangenheit durch die Verwendung klassischer EDC/NHS Kopplungschemie versucht wurde. Bei dieser Art der Anbindung wird das Protein ungerichtet gekoppelt, was zu unvorhersagbaren Produktqualitäten mit variablen osteogenen Aktivitäten führt. Um eine Reproduktion solcher Funktionalisierungen mit BMP2 zu ermöglichen wurden zwei BMP-2 Varianten erzeigt, wobei bei einer der Varianten eine Aminosäure im N-terminalen Teil des reifen Proteinteils gegen eine unnatürliche Aminosäure BMP2-Plk), bei der anderen ein Alanin gegen ein Cystein ausgetauscht wurde BMP2-A2C. Durch diesen Austausch wird es möglich, diese Varianten gerichtet an polymere Strukturen anzubinden. Beide Proteine wurden in E. coli exprimiert, renaturiert und mittels Kationenaustausch-Chromatographie aufgereinigt. Die resultierenden Proteinprodukte wurden intensiv bzgl. ihres Reinheitsgrades sowie ihrer biologischen Aktivität überprüft. Letzteres erfolgte sowohl durch In-vitro Interaktions-Analysen als auch durch zellbasierte Untersuchungen. Beide Proteine konnten erfolgreich an polymere Strukturen ("beads") gekoppelt werden. Es konnte gezeigt werden, dass die verschiedenen BMP2 funktionalisierten beads mit isolierten Ektodomänen des BMP Typ I Rezeptors (BMPR-IA) interagieren. Dies belegt, dass die biologische Aktivität auch nach der Kopplung erhalten bleibt. Die funktionalisierten beads induzieren die osteogene Differenzierung von C2C12 Zellen. Die Differenzierung erfolgt aber nur in jenen Zellen die im direkten Kontakt zu den beads stehen. Dies legt nahe, dass beide BMP2 Varianten wirklich kovalent gekoppelt und nicht nur adsorbiert sind. Es kann behauptet werden, dass im Rahmen dieser Arbeit ein System entwickelt wurde, durch das eine gerichtete Immobilisierung von BMP2 an solide Oberflächen möglich ist. Dadurch können möglicherweise die notwendigen BMP2 Mengen reduziert werden, da bereits Subnanogram Mengen der gekoppelten BMP2 Varianten Osteogenese auslösen können. Da gekoppelte Proteine nicht durch interstitielle Flüssigkeiten entfernt werden können unterliegt die Fortdauer ihrer biologischen Aktivität der Halbwertszeit des verwendeten Trägermaterials, was durch die verlängerten Wirkzeiten eine Verringerung der verwendeten Wachstumsfaktormenge ermöglicht. Es wird beabsichtigt diese Kopplungsstrategie weiterzuentwickeln um die derzeit am Markt befindlichen BMP2 beinhaltenden Medizinprodukte ersetzen zu können. KW - Protein chemistry KW - BMP-2 KW - protein immobilization KW - site-specific immobilization Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-153766 ER - TY - JOUR A1 - Sánchez, Rafael A1 - Thierschmann, Holger A1 - Molenkamp, Laurens W. T1 - Single-electron thermal devices coupled to a mesoscopic gate JF - New Journal of Physics N2 - We theoretically investigate the propagation of heat currents in a three-terminal quantum dot engine. Electron–electron interactions introduce state-dependent processes which can be resolved by energy-dependent tunneling rates. We identify the relevant transitions which define the operation of the system as a thermal transistor or a thermal diode. In the former case, thermal-induced charge fluctuations in the gate dot modify the thermal currents in the conductor with suppressed heat injection, resulting in huge amplification factors and the possible gating with arbitrarily low energy cost. In the latter case, enhanced correlations of the state-selective tunneling transitions redistribute heat flows giving high rectification coefficients and the unexpected cooling of one conductor terminal by heating the other one. We propose quantum dot arrays as a possible way to achieve the extreme tunneling asymmetries required for the different operations. KW - physics KW - quantum dot KW - heat currents KW - thermal devices KW - single-electron tunneling Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-172982 VL - 19 ER - TY - JOUR A1 - Syperek, M. A1 - Andrzejewski, J. A1 - Rudno-Rudziński, W. A1 - Maryński, A. A1 - Sȩk, G. A1 - Misiewicz, J. A1 - Reithmaier, J. P. A1 - Somers, A. A1 - Höfling, S. T1 - The issue of 0D-like ground state isolation in GaAs- and InP-based coupled quantum dots-quantum well systems JF - Journal of Physics: Conference Series N2 - The issue of quantum mechanical coupling between a semiconductor quantum dot and a quantum well is studied in two families of GaAs- and InP- based structures at cryogenic temperatures. It is shown that by tuning the quantum well parameters one can strongly disturb the 0D-character of the coupled system ground state, initially located in a dot. The out-coupling of either an electron or a hole state from the quantum dot confining potential is viewed by a significant elongation of the photoluminescence decay time constant. Band structure calculations show that in the GaAs-based coupled system at its ground state a hole remains isolated in the dot, whereas an electron gets delocalized towards the quantum well. The opposite picture is built for the ground state of a coupled system based on InP. KW - quantum mechanical coupling KW - quantum well KW - semiconductor quantum dot Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-262876 SN - 1742-6588 SN - 1742-6596 VL - 906 IS - 1 ER - TY - JOUR A1 - Sunkavalli, Ushasree A1 - Aguilar, Carmen A1 - Silva, Ricardo Jorge A1 - Sharan, Malvika A1 - Cruz, Ana Rita A1 - Tawk, Caroline A1 - Maudet, Claire A1 - Mano, Miguel A1 - Eulalio, Ana T1 - Analysis of host microRNA function uncovers a role for miR-29b-2-5p in Shigella capture by filopodia JF - PLoS Pathogens N2 - MicroRNAs play an important role in the interplay between bacterial pathogens and host cells, participating as host defense mechanisms, as well as exploited by bacteria to subvert host cellular functions. Here, we show that microRNAs modulate infection by Shigella flexneri, a major causative agent of bacillary dysentery in humans. Specifically, we characterize the dual regulatory role of miR-29b-2-5p during infection, showing that this microRNA strongly favors Shigella infection by promoting both bacterial binding to host cells and intracellular replication. Using a combination of transcriptome analysis and targeted high-content RNAi screening, we identify UNC5C as a direct target of miR-29b-2-5p and show its pivotal role in the modulation of Shigella binding to host cells. MiR-29b-2-5p, through repression of UNC5C, strongly enhances filopodia formation thus increasing Shigella capture and promoting bacterial invasion. The increase of filopodia formation mediated by miR-29b-2-5p is dependent on RhoF and Cdc42 Rho-GTPases. Interestingly, the levels of miR-29b-2-5p, but not of other mature microRNAs from the same precursor, are decreased upon Shigella replication at late times post-infection, through degradation of the mature microRNA by the exonuclease PNPT1. While the relatively high basal levels of miR-29b-2-5p at the start of infection ensure efficient Shigella capture by host cell filopodia, dampening of miR-29b-2-5p levels later during infection may constitute a bacterial strategy to favor a balanced intracellular replication to avoid premature cell death and favor dissemination to neighboring cells, or alternatively, part of the host response to counteract Shigella infection. Overall, these findings reveal a previously unappreciated role of microRNAs, and in particular miR-29b-2-5p, in the interaction of Shigella with host cells. KW - hos tcells KW - Salmonellosis KW - Shigellosis KW - microRNAs KW - Shigella KW - small interfering RNAs KW - HeLa cells KW - Cell binding Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-158204 VL - 13 IS - 4 ER - TY - JOUR A1 - Suchomel, H. A1 - Brodbeck, S. A1 - Liew, T. C. H. A1 - Amthor, M. A1 - Klaas, M. A1 - Klembt, S. A1 - Kamp, M. A1 - Höfling, S. A1 - Schneider, C. T1 - Prototype of a bistable polariton field-effect transistor switch JF - Scientific Reports N2 - Microcavity exciton polaritons are promising candidates to build a new generation of highly nonlinear and integrated optoelectronic devices. Such devices range from novel coherent light emitters to reconfigurable potential landscapes for electro-optical polariton-lattice based quantum simulators as well as building blocks of optical logic architectures. Especially for the latter, the strongly interacting nature of the light-matter hybrid particles has been used to facilitate fast and efficient switching of light by light, something which is very hard to achieve with weakly interacting photons. We demonstrate here that polariton transistor switches can be fully integrated in electro-optical schemes by implementing a one-dimensional polariton channel which is operated by an electrical gate rather than by a control laser beam. The operation of the device, which is the polariton equivalent to a field-effect transistor, relies on combining electro-optical potential landscape engineering with local exciton ionization to control the scattering dynamics underneath the gate. We furthermore demonstrate that our device has a region of negative differential resistance and features a completely new way to create bistable behavior. KW - materials for optics KW - nanoscience and technology KW - optics and photonics KW - semiconductors Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-158323 VL - 7 IS - 5114 ER - TY - JOUR A1 - Strohmeier, Michael A1 - Montenegro, Sergio T1 - Coupled GPS/MEMS IMU Attitude Determination of Small UAVs with COTS JF - Electronics N2 - This paper proposes an attitude determination system for small Unmanned Aerial Vehicles (UAV) with a weight limit of 5 kg and a small footprint of 0.5m x 0.5 m. The system is realized by coupling single-frequency Global Positioning System (GPS) code and carrier-phase measurements with the data acquired from a Micro-Electro-Mechanical System (MEMS) Inertial Measurement Unit (IMU) using consumer-grade Components-Off-The-Shelf (COTS) only. The sensor fusion is accomplished using two Extended Kalman Filters (EKF) that are coupled by exchanging information about the currently estimated baseline. With a baseline of 48 cm, the static heading accuracy of the proposed system is comparable to the one of a commercial single-frequency GPS heading system with an accuracy of approximately 0.25°/m. Flight testing shows that the proposed system is able to obtain a reliable and stable GPS heading estimation without an aiding magnetometer. KW - Attitude Heading Reference System (AHRS) KW - magnetometer KW - MEMS IMU KW - Real-time Kinematics (RTK) KW - GPS KW - UAV KW - attitude determination Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-171179 VL - 6 IS - 1 ER - TY - THES A1 - Stritt, Simon T1 - The role of the cytoskeleton in platelet production and the pathogenesis of platelet disorders in humans and mice T1 - Die Rolle des Zytoskeletts in der Thrombopoese und der Pathogenese von Thrombozytopathien im Menschen und der Maus N2 - Platelets are continuously produced from megakaryocytes (MK) in the bone marrow by a cytoskeleton-driven process of which the molecular regulation is not fully understood. As revealed in this thesis, MK/ platelet-specific Profilin1 (Pfn1) deficiency results in micro- thrombocytopenia, a hallmark of the Wiskott-Aldrich syndrome (WAS) in humans, due to accelerated platelet turnover and premature platelet release into the bone marrow. Both Pfn1-deficient mouse platelets and platelets isolated from WAS patients contained abnormally organized and hyper-stable microtubules. These results reveal an unexpected function of Pfn1 as a regulator of microtubule organization and point to a previously unrecognized mechanism underlying the platelet formation defect in WAS patients. In contrast, Twinfilin2a (Twf2a) was established as a central regulator of platelet reactivity and turnover. Twf2a-deficient mice revealed an age-dependent macrothrombocytopenia that could be explained by a markedly decreased platelet half-life, likely due to the pronounced hyper-reactivity of \(Twf2a^{-/-}\) platelets. The latter was characterized by sustained integrin acti- vation and thrombin generation in vitro that translated into accelerated thrombus formation in vivo. To further elucidate mechanisms of integrin activation, Rap1-GTP-interacting adaptor molecule (RIAM)-null mice were generated. Despite the proposed critical role of RIAM for platelet integrin activation, no alterations in this process could be found and it was concluded that RIAM is dispensable for the activation of β1 and β3 integrins, at least in platelets. These findings change the current mechanistic understanding of platelet integrin activation. Outside-in signaling by integrins and other surface receptors was supposed to regulate MK migration, but also the temporal and spatial formation of proplatelet protrusions. In this the- sis, phospholipase D (PLD) was revealed as critical regulator of actin dynamics and podo- some formation in MKs. Hence, the unaltered platelet counts and production in \(Pld1/2^{-/-}\) mice and the absence of a premature platelet release in the bone marrow of \(Itga2^{-/-}\) mice question the role of podosomes in platelet production and raise the need to reconsider the proposed inhibitory signaling by α2β1 integrins on proplatelet formation. Non-muscle myosin IIA (NMMIIA) has been implicated as a downstream effector of the in- hibitory signals transmitted via α2β1 integrins. Besides Rho-GTPase signaling, also \(Mg^{2+}\) and transient receptor potential melastatin-like 7 (TRPM7) channel α-kinase are known regulators of NMMIIA activity. In this thesis, TRPM7 was identified as major regulator of \(Mg^{2+}\) homeostasis in MKs and platelets. Furthermore, decreased \([Mg^{2+}]_i\) led to deregulated NMMIIA activity and altered cytoskeletal dynamics that impaired thrombopoiesis and resulted in macrothrombocytopenia in humans and mice. N2 - Thrombozyten werden kontinuierlich durch einen Zytoskelett-getriebenen Prozess von Megakaryozyten (MK) im Knochenmark gebildet. Die zugrunde liegenden molekularen Me- chanismen sind jedoch weitestgehend unverstanden. In dieser Thesis konnte gezeigt werden, dass eine MK/ Thrombozyten-spezifische Profilin1 (Pfn1) Defizienz eine Mikrothrombozytopenie verursacht, die das Hauptmerkmal des Wiskott- Aldrich Syndroms (WAS) im Menschen ist. Die reduzierte Thrombozytenzahl konnte auf eine beschleunigte Entfernung der Thrombozyten aus der Zirkulation sowie deren vorzeitige Freisetzung im Knochenmark zurückgeführt werden. Sowohl Thrombozyten von Pfn1- defizienten Mäusen, als auch von Patienten mit WAS wiesen abnormal organisierte und hyper-stabile Mikrotubuli auf. Die im Rahmen dieser Thesis gewonnenen Ergebnisse zeigen eine unerwartete Funktion von Pfn1 als Regulator der Mikrotubuliorganisation und weisen auf einen bisher nicht erkannten Mechanismus hin, welcher dem Thrombozytenproduktionsde- fekt in Patienten mit WAS zugrunde liegt. Im Gegensatz hierzu konnte Twinfilin2a (Twf2a) als zentraler Regulator der Thrombozyten- reaktivität und Lebenspanne etabliert werden. Mäuse mit einer Twf2a Defizienz zeigten eine progressive Makrothrombozytopenie, die durch eine stark reduzierte Lebenspanne der Thrombozyten erklärt werden konnte. Letzteres war höchstwahrscheinlich durch eine erhöhte Empfindlichkeit von Twf2a-defizienten Thrombozyten gegenüber von aktivierenden Stimuli bedingt. Die Hyperreaktivität von Twf2a-defizienten Thrombozyten zeigte sich durch eine verlängerte Aktivierung der Integrine und erhöhter Thrombingenerierung in vitro sowie be- schleunigter Thrombusbildung in vivo. Um die Mechanismen der Integrinaktivierung besser zu charakterisieren, wurden Rap1-GTP- interacting adaptor molecule (RIAM)-null Mäuse generiert. Obwohl RIAM eine zentrale Rolle in der thrombozytären Integrinaktivierung zugeschriebenen wurde, konnten keine Defekte in diesem Prozess in RIAM-null Thrombozyten identifiziert werden. Dies führte zu der Schluss- folgerung, dass RIAM für die Aktivierung von β1 und β3 Integrinen in Thrombozyten nicht benötigt wird. Diese Erkenntnisse verändern das gegenwärtige mechanistische Verständnis der Integrinaktivierung in Thrombozyten. Die outside-in Signalgebung durch Integrine und andere Oberflächenrezeptoren reguliert die Migration sowie die zeitliche und räumliche Bildung von proplatelets durch MKs. In dieser Thesis konnte gezeigt werden, dass Phospholipase D (PLD) ein zentraler Regulator der Aktindynamik und Podosomenbildung in MKs ist. Die normale Thrombozytenzahl und -Produktion in \(Pld1/2^{-/-}\) Mäusen sowie die fehlende vorzeitige Freisetzung von Thrombozytenim Knochenmark von \(Itga2^{-/-}\) Mäusen, stellen die Funktion von Podosomen in der Throm- bozytenproduktion in Frage. Ferner zeigen diese Ergebnisse, dass die Rolle der inhibitori- schen Signalgebung durch α2β1 Integrine in der proplatelet-Bildung noch einmal überdacht werden muss. Non-muscle myosin IIA (NMMIIA) wird als Effektorprotein im α2β1 Integrinsignalweg ange- sehen. Neben Signalen, die durch Rho-GTPasen vermittelt werden, regulieren auch \(Mg^{2+}\) und die α-Kinase des transient receptor potential melastatin-like 7 (TRPM7) Kanals die Akti- vität von NMMIIA. Im Rahmen dieser Thesis wurde TRPM7 als Hauptregulator der \(Mg^{2+}\) Homöostase in MKs und Thrombozyten identifiziert. Darüber hinaus führten erniedrigte intra- zelluläre \(Mg^{2+}\) Konzentrationen zu einer veränderten NMMIIA Aktivität und Zytoskelettdyna- mik. Diese Defekte beeinträchtigten die Thrombopoese und verursachten eine Makrothrom- bozytopenie im Menschen und der Maus. KW - Thrombozytopoese KW - Thrombozytopathie KW - Megakaryopoese KW - Zellskelett KW - Thrombozyt KW - Zytoskelett Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-122662 ER - TY - JOUR A1 - Straßer, Marion A1 - Schrauth, Joachim H. X. A1 - Dembski, Sofia A1 - Haddad, Daniel A1 - Ahrens, Bernd A1 - Schweizer, Stefan A1 - Christ, Bastian A1 - Cubukova, Alevtina A1 - Metzger, Marco A1 - Walles, Heike A1 - Jakob, Peter M. A1 - Sextl, Gerhard T1 - Calcium fluoride based multifunctional nanoparticles for multimodal imaging JF - Beilstein Journal of Nanotechnology N2 - New multifunctional nanoparticles (NPs) that can be used as contrast agents (CA) in different imaging techniques, such as photoluminescence (PL) microscopy and magnetic resonance imaging (MRI), open new possibilities for medical imaging, e.g., in the fields of diagnostics or tissue characterization in regenerative medicine. The focus of this study is on the synthesis and characterization of CaF\(_{2}\):(Tb\(^{3+}\),Gd\(^{3+}\)) NPs. Fabricated in a wet-chemical procedure, the spherical NPs with a diameter of 5–10 nm show a crystalline structure. Simultaneous doping of the NPs with different lanthanide ions, leading to paramagnetism and fluorescence, makes them suitable for MR and PL imaging. Owing to the Gd\(^{3+}\) ions on the surface, the NPs reduce the MR T\(_{1}\) relaxation time constant as a function of their concentration. Thus, the NPs can be used as a MRI CA with a mean relaxivity of about r = 0.471 mL·mg\(^{−1}\)·s\(^{−1}\). Repeated MRI examinations of four different batches prove the reproducibility of the NP synthesis and determine the long-term stability of the CAs. No cytotoxicity of NP concentrations between 0.5 and 1 mg·mL\(^{−1}\) was observed after exposure to human dermal fibroblasts over 24 h. Overall this study shows, that the CaF\(_{2}\):(Tb\(^{3+}\),Gd\(^{3+}\)) NPs are suitable for medical imaging. KW - calcium fluoride nanoparticles KW - magnetic resonance imaging (MRI) KW - multifunctional nanoparticles KW - multimodal imaging KW - photoluminescence Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-170657 VL - 8 ER - TY - JOUR A1 - Stoevesandt, Johanna A1 - Hosp, Christine A1 - Kerstan, Andreas A1 - Trautmann, Axel T1 - Safety of 100 µg venom immunotherapy rush protocols in children compared to adults JF - Allergy, Asthma & Clinical Immunology N2 - Background: There is a paucity of studies examining the safety of venom immunotherapy (VIT) in children. We aimed to assess the incidence of anaphylactic side effects during rush VIT in a cohort of pediatric patients and adult controls. Methods: 72 consecutive cycles of VIT-buildup in 71 children/adolescents aged 7–17 years were retrospectively evaluated and compared to an adult control group (n = 981) with regard to baseline parameters (sex, causative venom, severity of index sting reaction, results of allergy testing, comorbidities) and the incidence of anaphylactic adverse reactions. Results: Compared to adults, severe index sting-induced anaphylaxis was significantly less common in children (P = .001). Children were more likely to suffer from bee venom allergy (P < .001) and showed higher levels of bee venom-specific IgE (P = .013), but lower serum tryptase concentrations (P = .014). The overall rate of VIT-induced anaphylactic reactions was higher in children than in adults (6.9% vs 2.5%, P = .046 by univariate analysis). In the final binary logistic regression model, however, only bee VIT (P = .039; odds ratio 2.25; confidence interval 1.04–4.87) and 5-day compared to 3-day buildup protocols (P = .011; odds ratio 2.64; confidence interval 1.25–5.57) were associated with an increased risk of treatment-induced anaphylaxis. All pediatric patients finally reached and tolerated the target maintenance dose of 100 µg. Conclusions: The higher anaphylactic reaction rate observed in pediatric patients may be attributed to a greater prevalence of bee venom allergy. VIT-induced anaphylaxis in children is usually mild and does not affect further updosing and maintenance of VIT. KW - anaphylaxis KW - bee KW - buildup phase KW - hymenoptera KW - pediatric KW - risk factor KW - vespula Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-157830 VL - 13 IS - 32 ER - TY - THES A1 - Stockinger, Bastian T1 - Causes and effects of worker mobility between firms: empirical studies for Germany T1 - Ursachen und Wirkungen von Beschäftigtenmobilität zwischen Betrieben: empirische Studien für Deutschland N2 - This dissertation investigates selected causes and effects of worker mobility between firms in three empirical studies for Germany. Chapter 2 investigates the productivity effects of worker inflows to manufacturing establishments, distinguishing inflows by their previous employers’ wage level, as a proxy for productivity. The chapter is motivated by several empirical studies which find that worker inflows from more productive or higher-paying firms increase hiring firms’ productivity. The analyses in chapter 2 are based on a unique linked employer-employee data set. The findings indicate that inflows from higher-paying establishments do not increase hiring establishments’ productivity, but inflows from lower-paying establishments do. Further analyses suggest that this effect is due to a positive selectivity of such inflows from their sending establishments. These findings can be interpreted as evidence of a reallocation process by which the best employees of lower-paying establishments become hired by higher-paying establishments. This process reflects the assortative pattern of worker mobility in Germany documented by Card et al. (2013) for the past decades. The chapter thus contributes to the literature by linking establishment-level productivity analysis to the assortative pattern of inter-firm worker mobility, thereby providing a micro-foundation for the latter. Chapter 3 focuses on a positive selection of workers moving between firms from another, more specific perspective. The analysis focuses on the importance of regional labor market competition for establishments’ apprentice training and poaching of apprenticeship completers. Previous studies have found that firms provide less training if they are located in regions with strong labor market competition. This finding is usually interpreted as evidence of a higher risk of poaching in these regions. Yet, there is no direct evidence that regional competition is positively correlated with poaching. Building on a recently established approach to ex-post identify poaching of apprenticeship completers, this chapter is the first to directly investigate the correlation between regional labor market competition and poaching. Using German administrative data, it is found that competition indeed increases training establishments’ probability of becoming poaching victims. However, poaching victims do not change their apprenticeship training activity in reaction to poaching. Instead, the findings indicate that the lower training activity in competitive regions can be attributed to lower retention rates, as well as a less adverse selection and lower labor and hiring costs of apprenticeship completers hired from rivals. Chapter 4 investigates the effects of local broadband internet availability on establishment-level employment growth. The analysis uses data for Germany in the years 2005-2009, when broadband was introduced in rural regions of Western Germany and in large parts of Eastern Germany. Technical frictions in broadband rollout are exploited to obtain exogenous variation in local broadband availability. The results suggest that broadband expansion had a positive effect on employment growth in the Western German service sector and a negative effect in Western German manufacturing, suggesting that broadband expansion has accelerated the reallocation of workers from manufacturing to services. Furthermore, this pattern of results is driven by pronounced positive effects in knowledge- and computer-intensive industries, suggesting that it is the actual use of broadband in the production process that leads to complementary hiring, respectively a slowdown of employment growth, in the respective sectors. For Eastern Germany, no significant employment growth effects are found. N2 - Diese Dissertation untersucht ausgewählte Aspekte der Mobilität von Beschäftigten zwischen Betrieben. Einleitend (Kapitel 1) wird diese Form der Arbeitsmobilität auf Basis einer knappen Literaturübersicht näher charakterisiert. So wird die Bedeutung von Beschäftigtenmobilität zwischen bestehenden Betrieben als Reallokationsmechanismus am Arbeitsmarkt hervorgehoben, verglichen etwa mit der Reallokation, die durch Gründung und Schließung von Betrieben zustande kommt. Zudem wird aufgezeigt, welche Bedeutung institutionelle Rahmenbedingungen, insbesondere die Regulierung des Arbeitsmarkts, für die Mobilität von Beschäftigten zwischen Betrieben haben. Im Falle Deutschlands, das eine eher strikte Regulierung aufweist, führt der landesspezifische institutionelle Kontext demnach zu einem relativ geringen Maß an Beschäftigtenmobilität sowie teilweise (im Falle freiwilliger Betriebswechsel) zu einer Positivselektion von Betriebswechslern. Schließlich wird hervorgehoben, dass Arbeitsmärkte in hohem Maße lokal sind, wobei sich die Lokalität nicht zwingend und nicht allein auf die geographische Dimension beschränkt. Die Beschäftigtenmobilität zwischen Betrieben ist daher ein stark lokales Phänomen und potentiell konstitutiv für lokale Arbeitsmärkte. Der Hauptteil der Dissertation (Kapitel 2-4) besteht aus drei weitgehend unabhängig voneinander entstanden empirischen Studien. Alle drei Studien nutzen administrative Beschäftigungsdaten für Deutschland sowie mikroökonometrische Methoden. Im zweiten Kapitel, welches in Co-Autorenschaft mit Katja Wolf entstand, werden die betrieblichen Produktivitätswirkungen von Beschäftigtenzugängen je nach Produktivitätsniveau des Herkunftsbetriebs untersucht. Frühere empirische Studien zeigen, dass Zugänge von Beschäftigten aus produktiveren Betrieben die Produktivität der einstellenden Betriebe steigern. Wir untersuchen diesen Zusammenhang für Deutschland anhand eines eigens generierten Linked Employer-Employee Datensatzes. Dabei ordnen wir Herkunfts- und Zielbetriebe von Betriebswechslern anhand ihres Medianlohns. Unsere Ergebnisse zeigen, dass Beschäftigtenzugänge aus höher entlohnenden Betrieben keine Wirkung auf die Produktivität der Zielbetriebe haben. Zugänge aus geringer entlohnenden Betrieben hingegen haben unseren Ergebnissen zufolge einen positiven Produktivitätseffekt. Weitere Analysen ergeben, dass dieser Effekt in einer Positivauswahl dieser Beschäftigten aus ihren Herkunftsbetrieben begründet liegt. Ein Teil der produktivsten Beschäftigten von Betrieben mit niedrigerem Lohnniveau wechselt also zu Betrieben mit höherem Lohnniveau. Dieser Prozess spiegelt ein bereits bekanntes Muster der Beschäftigtenmobilität in Deutschland wider, wonach sich hochbezahlte Beschäftigte zunehmend in hoch entlohnende Betriebe sortieren. Unsere Ergebnisse können daher als Mikro-Fundierung für dieses gesamtwirtschaftliche Muster dienen. Im dritten Kapitel, basierend auf einer Studie in Kooperation mit Thomas Zwick, wird der Zusammenhang regionalen Arbeitsmarktwettbewerbs mit dem Ausbildungsverhalten und dem Abwerben von Ausbildungsabsolventen von Betrieben untersucht. Frühere Studien haben gezeigt, dass Betriebe in Regionen mit starkem Arbeitsmarktwettbewerb weniger ausbilden. Dies wird üblicherweise als Beleg dafür interpretiert, dass in diesen Regionen ein erhöhtes Risiko bestehe, Ausbildungsabsolventen abgeworben zu bekommen. Allerdings gibt es keine direkten empirischen Belege für diesen Zusammenhang. Auf Basis eines neuartigen Ansatzes, das Abwerben von Ausbildungsabsolventen ex post zu identifizieren, unter-sucht diese Studie erstmals direkt den Zusammenhang zwischen regionalem Arbeitsmarktwettbewerb und Abwerbungen. Hierfür nutzen wir administrative Daten für Deutschland. Unsere Ergebnisse zeigen, dass regionaler Wettbewerb tat-sächlich mit einer höheren Wahrscheinlichkeit zusammenhängt, dass Ausbildungs-betriebe Opfer von Abwerbungen werden. Allerdings ändern die betroffenen Betriebe nicht ihr Ausbildungsverhalten als Reaktion auf Abwerbungen. Stattdessen zeigen unsere Ergebnisse, dass die niedrigere Ausbildungsaktivität in Regionen mit starkem Arbeitsmarktwettbewerb eher mit einer generell geringeren Übernahmewahrscheinlichkeit von Ausbildungsabsolventen zusammenhängt. Zudem sind in solchen Regionen die Betriebswechsler unter den Ausbildungsabsolventen relativ positiv selektiert; gleichzeitig verursachen sie relativ geringe Kosten für die einstellenden Betriebe. Das vierte Kapitel untersucht die Wirkungen der lokalen Verfügbarkeit von Breit-band-Internet auf das Beschäftigungswachstum in Betrieben. Es werden Daten aus Deutschland für den Zeitraum 2005-2009 genutzt, als Breitband-Internet in den ländlichen Regionen Westdeutschlands und weiten Teilen Ostdeutschlands eingeführt wurde. Es werden verschiedene technische Hürden des Breitbandausbaus genutzt, um exogene Varianz in der lokalen Verfügbarkeit von Breitband-Internet zu erhalten und so den Effekt von Breitband-Internet auf betriebliches Beschäftigungswachstum von den Effekten unbeobachteter Einflussgrößen und einer möglichen inversen Kausalbeziehung zu isolieren. Die Ergebnisse legen nahe, dass der Breitband-Ausbau einen positiven Effekt auf das Beschäftigungswachstum in westdeutschen Dienstleistungsbetrieben hatte, im westdeutschen Industriesektor hingegen einen negativen Effekt. Dieses Ergebnismuster geht einher mit deutlichen positiven Effekten in wissens- und computerintensiven Branchen. Dies legt nahe, dass die genannten Effekte auf die tatsächliche Nutzung von Breit-band-Internet im Produktionsprozess zurückgehen und dass Betriebe in den jeweiligen Sektoren komplementär zu Breitband Beschäftigung aufbauen, beziehungs-weise den Beschäftigungsaufbau verlangsamen. Für Ostdeutschland werden keine signifikanten Effekte auf betriebliches Beschäftigungswachstum gefunden. Abschließend (Kapitel 5) werden die empirischen Ergebnisse der Kapitel 2-4 vor dem Hintergrund der Erkenntnisse aus Kapitel 1 reflektiert. Dabei bleibt zunächst festzuhalten, dass alle drei empirischen Kapitel Beschäftigtenmobilität auf Betriebsebene analysieren und damit die quantitativ bedeutsamste Form der Reallokation auf dem Arbeitsmarkt, die zudem weitreichende ökonomische Funktionen hat (beispielsweise Wissenstransfer). Zweitens bestätigen die drei empirischen Kapitel den Befund, dass Beschäftigtenmobilität in Deutschland unter anderem einer Positivselektion von Beschäftigten zuzurechnen ist, die insbesondere in den Kapiteln 2 und 3 aus verschiedenen Perspektiven näher untersucht wird. Drittens und letztens tragen alle drei empirischen Studien der eingangs betonten Lokalität von Arbeitsmärkten auf verschiedene Weise Rechnung. KW - Arbeitsmarkt KW - Beschäftigung KW - Betrieb KW - Beschäftigtenmobilität KW - worker mobility Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-153894 ER - TY - JOUR A1 - Steinborn, Michael B. A1 - Huestegge, Lynn T1 - Phone conversation while processing information: chronometric analysis of load effects in everyday-media multitasking JF - Frontiers in Psychology N2 - This is a pilot study that examined the effect of cell-phone conversation on cognition using a continuous multitasking paradigm. Current theorizing argues that phone conversation affects behavior (e.g., driving) by interfering at a level of cognitive processes (not peripheral activity) and by implying an attentional-failure account. Within the framework of an intermittent spare–utilized capacity threading model, we examined the effect of aspects of (secondary-task) phone conversation on (primary-task) continuous arithmetic performance, asking whether phone use makes components of automatic and controlled information-processing (i.e., easy vs. hard mental arithmetic) run more slowly, or alternatively, makes processing run less reliably albeit with the same processing speed. The results can be summarized as follows: While neither expecting a text message nor expecting an impending phone call had any detrimental effects on performance, active phone conversation was clearly detrimental to primary-task performance. Crucially, the decrement imposed by secondary-task (conversation) was not due to a constant slowdown but is better be characterized by an occasional breakdown of information processing, which differentially affected automatic and controlled components of primary-task processing. In conclusion, these findings support the notion that phone conversation makes individuals not constantly slower but more vulnerable to commit attention failure, and in this way, hampers stability of (primary-task) information processing. KW - effort KW - vigilance KW - sustained attention KW - cell phone conversation KW - variability Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-158253 VL - 8 IS - 896 ER - TY - JOUR A1 - Stein, Katharina A1 - Coulibaly, Drissa A1 - Stenchly, Kathrin A1 - Goetze, Dethardt A1 - Porembski, Stefan A1 - Lindner, André A1 - Konaté, Souleymane A1 - Linsenmair, Eduard K. T1 - Bee pollination increases yield quantity and quality of cash crops in Burkina Faso, West Africa JF - Scientific Reports N2 - Mutualistic biotic interactions as among flowering plants and their animal pollinators are a key component of biodiversity. Pollination, especially by insects, is a key element in ecosystem functioning, and hence constitutes an ecosystem service of global importance. Not only sexual reproduction of plants is ensured, but also yields are stabilized and genetic variability of crops is maintained, counteracting inbreeding depression and facilitating system resilience. While experiencing rapid environmental change, there is an increased demand for food and income security, especially in sub-Saharan communities, which are highly dependent on small scale agriculture. By combining exclusion experiments, pollinator surveys and field manipulations, this study for the first time quantifies the contribution of bee pollinators to smallholders’ production of the major cash crops, cotton and sesame, in Burkina Faso. Pollination by honeybees and wild bees significantly increased yield quantity and quality on average up to 62%, while exclusion of pollinators caused an average yield gap of 37% in cotton and 59% in sesame. Self-pollination revealed inbreeding depression effects on fruit set and low germination rates in the F1-generation. Our results highlight potential negative consequences of any pollinator decline, provoking risks to agriculture and compromising crop yields in sub-Saharan West Africa. KW - bees KW - pollination KW - Burkina Faso KW - cash crops KW - cotton KW - sesame Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-169914 VL - 7 IS - 17691 ER - TY - JOUR A1 - Steijven, Karin A1 - Spaethe, Johannes A1 - Steffan-Dewenter, Ingolf A1 - Härtel, Stephan T1 - Learning performance and brain structure of artificially-reared honey bees fed with different quantities of food JF - PeerJ N2 - Background Artificial rearing of honey bee larvae is an established method which enables to fully standardize the rearing environment and to manipulate the supplied diet to the brood. However, there are no studies which compare learning performance or neuroanatomic differences of artificially-reared (in-lab) bees in comparison with their in-hive reared counterparts. Methods Here we tested how different quantities of food during larval development affect body size, brain morphology and learning ability of adult honey bees. We used in-lab rearing to be able to manipulate the total quantity of food consumed during larval development. After hatching, a subset of the bees was taken for which we made 3D reconstructions of the brains using confocal laser-scanning microscopy. Learning ability and memory formation of the remaining bees was tested in a differential olfactory conditioning experiment. Finally, we evaluated how bees reared with different quantities of artificial diet compared to in-hive reared bees. Results Thorax and head size of in-lab reared honey bees, when fed the standard diet of 160 µl or less, were slightly smaller than hive bees. The brain structure analyses showed that artificially reared bees had smaller mushroom body (MB) lateral calyces than their in-hive counterparts, independently of the quantity of food they received. However, they showed the same total brain size and the same associative learning ability as in-hive reared bees. In terms of mid-term memory, but not early long-term memory, they performed even better than the in-hive control. Discussion We have demonstrated that bees that are reared artificially (according to the Aupinel protocol) and kept in lab-conditions perform the same or even better than their in-hive sisters in an olfactory conditioning experiment even though their lateral calyces were consistently smaller at emergence. The applied combination of experimental manipulation during the larval phase plus subsequent behavioral and neuro-anatomic analyses is a powerful tool for basic and applied honey bee research. KW - nutrition KW - cognition KW - neuroanatomy KW - differential olfactory conditioning KW - mushroom bodies KW - proboscis extension reflex KW - confocal laser scanning microscopy KW - Apis mellifera KW - brain development KW - morphometry Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-170137 VL - 5 IS - e3858 ER - TY - THES A1 - Steiger, Christoph T1 - Drug delivery of therapeutic gases – strategies for controlled and local delivery of carbon monoxide T1 - Zielgerichtete Freisetzung von therapeutischen Gasen - Strategien zur kontrollierten und lokalen Freisetzung von Kohlenstoffmonoxid N2 - The isoenzyme heme oxygenase 1 (HO-1) is a key element for maintaining cellular homeostasis. Upregulated in response to cellular stress, the HO-1 degrades heme into carbon monoxide (CO), biliverdin, and Fe2+. By means of a local cell-protective feedback loop the enzyme triggers numerous effects including anti-oxidative, anti-apoptotic, and anti-inflammatory events associated with complex signalling patterns which are largely orchestrated by CO. Various approaches to mimic this physiological HO-1 / CO system aiming for a treatment of medical conditions have been described [1]. These preclinical studies commonly applied CO systemically via (i) inhalation or (ii) using CO-Releasing Molecules (CORMs) [2]. The clinical use of these approaches, however, is challenged by a lack of practicability and substantial safety issues associated with the toxicity of high systemic doses of CO that are required for triggering therapeutic effects. Therefore, one rational of this thesis is to describe and evaluate strategies for the local delivery of CO aiming for safe and effective CO therapeutics of tomorrow. N2 - Das Isoenzym Hämoxygenase 1 (HO-1) ist ein zentraler Bestandteil in der Aufrechterhaltung der zellulären Homöostase. Es wird durch zellulären Stress induziert und baut daraufhin Häm zu Kohlenstoffmonoxid (CO), Biliverdin und Fe2+ ab. Im Sinne eines lokalen Rückkopplungsmechanismus stößt es damit eine Vielzahl physiologischer Mechanismen mit anti-oxidativen, anti-apoptotischen und anti-inflammatorischen Effekten an, welche zumeist durch CO reguliert und durch ein komplexes Netzwerk aus Signaltransduktionsprozessen vermittelt werden. Es wurden zahlreiche Versuche unternommen, diesen als HO-1 / CO System bezeichneten Mechanismus nachzuahmen, um dadurch eine Behandlung von verschiedenen Krankheitszuständen zu ermöglichen. In diesen präklinischen Studien wurde CO regelmäßig systemisch (i) per Inhalation oder (ii) in Form von CO freisetzenden Verbindungen (CO-Releasing Molecules - CORM) verabreicht . Die klinische Anwendung dieser Strategien ist jedoch durch Sicherheitsrisiken erheblich erschwert, insbesondere durch die Toxizität der notwendigen hohen systemischen Dosen von CO. Entsprechend beschäftigt sich diese Dissertation unter anderem mit der Beschreibung und Evaluation von Strategien zur lokalen Verabreichung von CO, mit dem Ziel sichere und effektive Konzepte zu dessen Anwendung zu entwickeln. KW - Targeted drug delivery KW - drug delivery KW - therapeutic gases KW - Kohlenmonoxid Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-141054 ER - TY - JOUR A1 - Stegner, David A1 - van Eeuwijk, Judith M.M. A1 - Angay, Oğuzhan A1 - Gorelashvili, Maximilian G. A1 - Semeniak, Daniela A1 - Pinnecker, Jürgen A1 - Schmithausen, Patrick A1 - Meyer, Imke A1 - Friedrich, Mike A1 - Dütting, Sebastian A1 - Brede, Christian A1 - Beilhack, Andreas A1 - Schulze, Harald A1 - Nieswandt, Bernhard A1 - Heinze, Katrin G. T1 - Thrombopoiesis is spatially regulated by the bone marrow vasculature JF - Nature Communications N2 - In mammals, megakaryocytes (MKs) in the bone marrow (BM) produce blood platelets, required for hemostasis and thrombosis. MKs originate from hematopoietic stem cells and are thought to migrate from an endosteal niche towards the vascular sinusoids during their maturation. Through imaging of MKs in the intact BM, here we show that MKs can be found within the entire BM, without a bias towards bone-distant regions. By combining in vivo two-photon microscopy and in situ light-sheet fluorescence microscopy with computational simulations, we reveal surprisingly slow MK migration, limited intervascular space, and a vessel-biased MK pool. These data challenge the current thrombopoiesis model of MK migration and support a modified model, where MKs at sinusoids are replenished by sinusoidal precursors rather than cells from a distant periostic niche. As MKs do not need to migrate to reach the vessel, therapies to increase MK numbers might be sufficient to raise platelet counts. KW - bone marrow KW - megakaryocytes KW - thrombopoiesis Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-170591 VL - 8 IS - 127 ER - TY - THES A1 - Sprengel, Martin T1 - A Theoretical and Numerical Analysis of a Kohn-Sham Equation and Related Control Problems T1 - Eine theoretische und numerische Untersuchung einer Kohn-Sham-Gleichung und verwandter Steuerungsprobleme N2 - In this work, multi-particle quantum optimal control problems are studied in the framework of time-dependent density functional theory (TDDFT). Quantum control problems are of great importance in both fundamental research and application of atomic and molecular systems. Typical applications are laser induced chemical reactions, nuclear magnetic resonance experiments, and quantum computing. Theoretically, the problem of how to describe a non-relativistic system of multiple particles is solved by the Schrödinger equation (SE). However, due to the exponential increase in numerical complexity with the number of particles, it is impossible to directly solve the Schrödinger equation for large systems of interest. An efficient and successful approach to overcome this difficulty is the framework of TDDFT and the use of the time-dependent Kohn-Sham (TDKS) equations therein. This is done by replacing the multi-particle SE with a set of nonlinear single-particle Schrödinger equations that are coupled through an additional potential. Despite the fact that TDDFT is widely used for physical and quantum chemical calculation and software packages for its use are readily available, its mathematical foundation is still under active development and even fundamental issues remain unproven today. The main purpose of this thesis is to provide a consistent and rigorous setting for the TDKS equations and of the related optimal control problems. In the first part of the thesis, the framework of density functional theory (DFT) and TDDFT are introduced. This includes a detailed presentation of the different functional sets forming DFT. Furthermore, the known equivalence of the TDKS system to the original SE problem is further discussed. To implement the TDDFT framework for multi-particle computations, the TDKS equations provide one of the most successful approaches nowadays. However, only few mathematical results concerning these equations are available and these results do not cover all issues that arise in the formulation of optimal control problems governed by the TDKS model. It is the purpose of the second part of this thesis to address these issues such as higher regularity of TDKS solutions and the case of weaker requirements on external (control) potentials that are instrumental for the formulation of well-posed TDKS control problems. For this purpose, in this work, existence and uniqueness of TDKS solutions are investigated in the Galerkin framework and using energy estimates for the nonlinear TDKS equations. In the third part of this thesis, optimal control problems governed by the TDKS model are formulated and investigated. For this purpose, relevant cost functionals that model the purpose of the control are discussed. Henceforth, TDKS control problems result from the requirement of optimising the given cost functionals subject to the differential constraint given by the TDKS equations. The analysis of these problems is novel and represents one of the main contributions of the present thesis. In particular, existence of minimizers is proved and their characterization by TDKS optimality systems is discussed in detail. To this end, Fréchet differentiability of the TDKS model and of the cost functionals is addressed considering \(H^1\) cost of the control. This part is concluded by deriving the reduced gradient in the \(L^2\) and \(H^1\) inner product. While the \(L^2\) optimization is widespread in the literature, the choice of the \(H^1\) gradient is motivated in this work by theoretical consideration and by resulting numerical advantages. The last part of the thesis is devoted to the numerical approximation of the TDKS optimality systems and to their solution by gradient-based optimization techniques. For the former purpose, Strang time-splitting pseudo-spectral schemes are discussed including a review of some recent theoretical estimates for these schemes and a numerical validation of these estimates. For the latter purpose, nonlinear (projected) conjugate gradient methods are implemented and are used to validate the theoretical analysis of this thesis with results of numerical experiments with different cost functional settings. N2 - In dieser Arbeit werden quantenmechanische Vielteilchen-Optimalsteuerungsprobleme im Rahmen der zeitabhängigen Dichtefunktionaltheorie (TDDFT) untersucht. Quantenmechanische Optimalsteuerungsprobleme sind sowohl in der Grundlagenforschung atomarer und molekularer Systeme als auch in entsprechenden Anwendungen von großer Bedeutung. Typische Anwendungen sind laserinduzierte chemische Reaktionen, Kernspinresonanzexperimente und Quantencomputer. Theoretisch ist das Problem einer nicht-relativistischen Beschreibung von Vielteilchensystemen mit der Schrödingergleichung (SG) gelöst. Tatsächlich ist es aber wegen des exponentiellen Anstiegs der numerischen Komplexität mit der Teilchenzahl unmöglich, die Schrödingergleichung für große Systeme von Interesse direkt zu lösen. Ein effizienter und erfolgreicher Ansatz diese Schwierigkeit zu überwinden ist die TDDFT und die Verwendung der zeitabhängigen Kohn-Sham-Gleichungen (TDKS) im Rahmen der TDDFT. Diese ersetzen die Vielteichlchen-SG durch ein System nichtlinearer Einteilchen-SGn, die mittels eines zusätzlichen Potentials gekoppelt sind. Obwohl die TDDFT für physikalische und quantenchemische Rechungen weit verbreitet ist und Softwarepakete zur direkten Verwendung zur Verfügung stehen, sind die mathematischen Grundlagen der TDDFT noch in der Entwicklung und grundlegende Vermutungen sind noch immer unbewiesen. Das Hauptanliegen der vorliegenden Arbeit ist es, einen konsistenten und mathematisch präzisen Rahmen für die TDKS-Gleichungen und verwandte Optimalsteuerungsprobleme zu liefern. Im ersten Teil der Arbeit wird die Dichtefunktionaltheorie (DFT) und die TDDFT eingeführt. Diese Einführung enthält eine detaillierte Darstellung der für die DFT relevanten Funktionenmengen. Außerdem wird die bereits bekannte Äquivalenz zwischen dem ursprünglichen Schrödingerproblem und dem TDKS-System mathematisch weitergehend diskutiert. Der derzeit erfolgreichste Ansatz, Vielteichenrechnungen im Rahmen der TDDFT umzusetzen, sind die TDKS-Gleichungen. Es sind jedoch bisher nur wenige mathematische Resultate über diese Gleichungen verfügbar und diese Ergebnisse behandeln nicht alle Probleme, die bei der Formulierung von Optimalsteuerungsproblemen bei TDKS-Gleichungen auftreten. Es ist das Ziel des zweiten Teils dieser Arbeit, diese für die Wohldefiniertheit der Formulierung der Optimalsteuerungsaufgabe maßgeblichen Probleme, wie die höhere Regularität der Lösungen der TDKS-Gleichungen und schwächere Voraussetzungen an das externe Kontrollpotential, zu behandeln. Dazu wird die Existenz und Eindeutigkeit von Lösungen der nichtlinearen TDKS-Gleichungen mit dem Galerkin-Ansatz und Energieabschätzungen untersucht. Im dritten Teil dieser Arbeit werden Probleme optimaler Steuerung bei TDKS-Gleichungen formuliert und untersucht. Dafür werden relevante Kostenfunktionale, die das Ziel der Steuerung modellieren, diskutiert. Die Optimalsteuerungsprobleme ergeben sich aus der Optimierung dieser Kosten unter der Nebenbedingung der TDKS-Gleichungen. Die Analyse dieser Probleme ist neu und stellt eines der Hauptergebnisse der vorliegenden Arbeit dar. Insbesondere wird die Existenz einer optimalen Steuerung bewiesen und ihre Charakterisierung mittels eines TDKS-Optimalitätssystem im Detail diskutiert. Dazu wird die Fréchet-Differenzierbarkeit des TDKS-Models und des Kostenfunktionals mit \(H^1\)-Steuerungskosten betrachtet. Abschließend wird der reduzierte Gradient im \(L^2\)- und im \(H^1\)-Skalarprodukt hergeleitet. Während die \(L^2\)-Optimierung in der Literatur weit verbreitet ist, wird in dieser Arbeit die Verwendung des \(H^1\)-Gradienten mit theoretischen Argumenten und resultierenden numerischen Vorteilen motiviert. Der letzte Teil dieser Arbeit ist der numerischen Approximation des TDKS-Optimalitätssystems und seiner Lösung mittels gradientenbasierter Optimierungsmethoden gewidmet. Für ersteres wird die Strang Zeitsplitting-Pseudospektralmethode diskutiert, eine Zusammenfassung einiger aktueller theoretischer Abschätzungen für dieses Schema angegeben und diese Abschätzungen numerisch überprüft. Für letzteres wird das (projizierte) nichtlineare Verfahren der konjugierten Gradienten (NCG) implementiert und verwendet um die theoretische Analyse dieser Arbeit mit den Ergebnissen numerischer Rechnungen für verschiedene Kostenfunktionale zu validieren. KW - Optimale Kontrolle KW - Dichtefunktionalformalismus KW - Optimierung KW - TDDFT KW - TD Kohn-Sham equations KW - optimal control Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-153545 ER - TY - THES A1 - Spitznagel, Niko T1 - Energy transfer during molten fuel coolant interaction T1 - Energieübertragung während Schmelze-Wasser-Interaktion N2 - The contact of hot melt with liquid water - called Molten Fuel Coolant Interaction (MFCI) - can result in vivid explosions. Such explosions can occur in different scenarios: in steel or powerplants but also in volcanoes. Because of the possible dramatic consequences of such explosions an investigation of the explosion process is necessary. Fundamental basics of this process are already discovered and explained, such as the frame conditions for these explosions. It has been shown that energy transfer during an MFCI-process can be very high because of the transfer of thermal energy caused by positive feedback mechanisms. Up to now the influence of several varying parameters on the energy transfer and the explosions is not yet investigated sufficiently. An important parameter is the melt temperature, because the amount of possibly transferable energy depends on it. The investigation of this influence is the main aim of this work. Therefor metallic tin melt was used, because of its nearly constant thermal material properties in a wide temperature range. With tin melt research in the temperature range from 400 °C up to 1000 °C are possible. One important result is the lower temperature limit for vapor film stability in the experiments. For low melt temperatures up to about 600 °C the vapor film is so unstable that it already can collapse before the mechanical trigger. As expected the transferred thermal energy all in all increases with higher temperatures. Although this effect sometimes is superposed by other influences such as the premix of melt and water, the result is confirmed after a consequent filtering of the remaining influences. This trend is not only recognizable in the amount of transferred energy, but also in the fragmentation of melt or the vaporizing water. But also the other influences on MFCI-explosions showed interesting results in the frame of this work. To perform the experiments the installation and preparation of the experimental Setup in the laboratory were necessary. In order to compare the results to volcanism and to get a better investigation of the brittle fragmentation of melt additional runs with magmatic melt were made. In the results the thermal power during energy transfer could be estimated. Furthermore the model of “cooling fragments “ could be usefully applied. N2 - Das Zusammentreffen von heißer Schmelze mit flüssigem Wasser (Schmelze-Wasser-Interaktion) - auf Englisch Molten-Fuel-Coolant-Interaction (MFCI) - kann zu heftigen Explosionen führen. Diese Explosionen sind in verschiedenen Szenarien möglich: in Stahl- und Kraftwerken, aber auch bei Vulkanen. Wegen der möglichen dramatischen Folgen solcher Explosionen ist eine Erforschung dieser Explosionsvorgänge notwendig. Wesentliche Grundlagen, unter welchen Voraussetzungen Schmelze-Wasser-Interaktionen zu Explosionen führen können, und der Ablauf dieser Vorgänge wurden weitgehend erforscht. Wie diese Forschungen gezeigt haben, kann die übertragene Energie bei diesen Vorgängen wegen positiver Rückkopplungsprozesse sehr hoch sein. Bislang wurden aber noch nicht in ausreichendem Maß die Einflussparameter auf die Energieübertragung und damit auf die Explosionsheftigkeit geprüft. Ein wichtiger Parameter ist die Schmelzetemperatur, da von ihr abhängt, wie viel thermische Energie freigesetzt werden kann. Die Untersuchung des Einflusses dieses Parameters ist das Hauptziel der vorliegenden Arbeit. Hierfür wurde bei den meisten Versuchen metallische Zinnschmelze verwendet, da die Materialwerte von Zinn über einen weiten Temperaturbereich annähernd konstant sind, von denen die Wärmeübertragung abhängt. Mit dieser Zinnschmelze war die Untersuchung der Schmelzetemperatur im Bereich von 400 °C bis 1000 °C möglich. Ein wesentliches Ergebnis zeigt die Abhängigkeit der Dampffilmstabilität von der Schmelzetemepratur. Bei niedrigen Schmelzetemperaturen bis etwa 600 °C ist der Dampffilm so instabil, dass er in den Experimenten bereits vor einer mechanischen Erschütterung zusammenbrach, die zu seiner Zerstörung eingesetzt wurde. Wie erwartet ist zu erkennen, dass mit höherer Schmelzetemperatur grundsätzlich mehr Energie umgesetzt werden kann. Obwohl dieser Effekt von weiteren Einflüssen auf die Explosionsstärke unter bestimmten Umständen überdeckt werden kann, wird dieses Ergebnis nach einer konsequenten Filterung der übrigen Einflüsse bestätigt. Diese Tendenz ist nicht nur an den berechneten übertragenen Gesamtenergiemengen erkennbar, sondern auch an den einzelnen Effekten wie z. B. der Fragmentation oder der Wasserverdampfung. Aber auch die weiteren Einflüsse auf die Energieübertragung wie z. B. die Vorvermischung von Schmelze und Wasser zeigten im Rahmen dieser Arbeit und der durchgeführten Experimente interessante Ergebnisse. Um diese Versuche durchführen zu können, waren die Einrichtung und Vorbereitung einer Versuchsanlage erforderlich. Zum Vergleich mit dem Vulkanismus und zur besseren Untersuchung der Feinfragmentation während ärmeübertagung wurden Versuche mit magmatischer Schmelze durchgeführt. In den Ergebnissen konnten thermische Leistungen während der Schmelze-Wasser-Interaktion bestimmt werden. Außerdem konnte das aufgestellte Modell der “kühlenden Fragmente “ sinnvoll angewendet werden. KW - Vulkanologie KW - Geophysik KW - Thermodynamik KW - Statisktik KW - Explosion KW - Sprödbruch KW - brittle fragmentation KW - Temperatureinfluss KW - Vorvermischung KW - Energieübertragung KW - Rückkopplung KW - influence of temperature KW - premix KW - energy transfer KW - feedback Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-142891 ER - TY - THES A1 - Spinner, Simon T1 - Self-Aware Resource Management in Virtualized Data Centers T1 - Selbstwahrnehmende Ressourcenverwaltung in virtualisierten Rechenzentren N2 - Enterprise applications in virtualized data centers are often subject to time-varying workloads, i.e., the load intensity and request mix change over time, due to seasonal patterns and trends, or unpredictable bursts in user requests. Varying workloads result in frequently changing resource demands to the underlying hardware infrastructure. Virtualization technologies enable sharing and on-demand allocation of hardware resources between multiple applications. In this context, the resource allocations to virtualized applications should be continuously adapted in an elastic fashion, so that "at each point in time the available resources match the current demand as closely as possible" (Herbst el al., 2013). Autonomic approaches to resource management promise significant increases in resource efficiency while avoiding violations of performance and availability requirements during peak workloads. Traditional approaches for autonomic resource management use threshold-based rules (e.g., Amazon EC2) that execute pre-defined reconfiguration actions when a metric reaches a certain threshold (e.g., high resource utilization or load imbalance). However, many business-critical applications are subject to Service-Level-Objectives defined on an application performance metric (e.g., response time or throughput). To determine thresholds so that the end-to-end application SLO is fulfilled poses a major challenge due to the complex relationship between the resource allocation to an application and the application performance. Furthermore, threshold-based approaches are inherently prone to an oscillating behavior resulting in unnecessary reconfigurations. In order to overcome the deficiencies of threshold-based approaches and enable a fully automated approach to dynamically control the resource allocations of virtualized applications, model-based approaches are required that can predict the impact of a reconfiguration on the application performance in advance. However, existing model-based approaches are severely limited in their learning capabilities. They either require complete performance models of the application as input, or use a pre-identified model structure and only learn certain model parameters from empirical data at run-time. The former requires high manual efforts and deep system knowledge to create the performance models. The latter does not provide the flexibility to capture the specifics of complex and heterogeneous system architectures. This thesis presents a self-aware approach to the resource management in virtualized data centers. In this context, self-aware means that it automatically learns performance models of the application and the virtualized infrastructure and reasons based on these models to autonomically adapt the resource allocations in accordance with given application SLOs. Learning a performance model requires the extraction of the model structure representing the system architecture as well as the estimation of model parameters, such as resource demands. The estimation of resource demands is a key challenge as they cannot be observed directly in most systems. The major scientific contributions of this thesis are: - A reference architecture for online model learning in virtualized systems. Our reference architecture is based on a set of model extraction agents. Each agent focuses on specific tasks to automatically create and update model skeletons capturing its local knowledge of the system and collaborates with other agents to extract the structural parts of a global performance model of the system. We define different agent roles in the reference architecture and propose a model-based collaboration mechanism for the agents. The agents may be bundled within virtual appliances and may be tailored to include knowledge about the software stack deployed in a specific virtual appliance. - An online method for the statistical estimation of resource demands. For a given request processed by an application, the resource time consumed for a specified resource within the system (e.g., CPU or I/O device), referred to as resource demand, is the total average time the resource is busy processing the request. A request could be any unit of work (e.g., web page request, database transaction, batch job) processed by the system. We provide a systematization of existing statistical approaches to resource demand estimation and conduct an extensive experimental comparison to evaluate the accuracy of these approaches. We propose a novel method to automatically select estimation approaches and demonstrate that it increases the robustness and accuracy of the estimated resource demands significantly. - Model-based controllers for autonomic vertical scaling of virtualized applications. We design two controllers based on online model-based reasoning techniques in order to vertically scale applications at run-time in accordance with application SLOs. The controllers exploit the knowledge from the automatically extracted performance models when determining necessary reconfigurations. The first controller adds and removes virtual CPUs to an application depending on the current demand. It uses a layered performance model to also consider the physical resource contention when determining the required resources. The second controller adapts the resource allocations proactively to ensure the availability of the application during workload peaks and avoid reconfiguration during phases of high workload. We demonstrate the applicability of our approach in current virtualized environments and show its effectiveness leading to significant increases in resource efficiency and improvements of the application performance and availability under time-varying workloads. The evaluation of our approach is based on two case studies representative of widely used enterprise applications in virtualized data centers. In our case studies, we were able to reduce the amount of required CPU resources by up to 23% and the number of reconfigurations by up to 95% compared to a rule-based approach while ensuring full compliance with application SLO. Furthermore, using workload forecasting techniques we were able to schedule expensive reconfigurations (e.g., changes to the memory size) during phases of load load and thus were able to reduce their impact on application availability by over 80% while significantly improving application performance compared to a reactive controller. The methods and techniques for resource demand estimation and vertical application scaling were developed and evaluated in close collaboration with VMware and Google. N2 - Unternehmensanwendungen in virtualisierten Rechenzentren unterliegen häufig zeitabhängigen Arbeitslasten, d.h. die Lastintensität und der Anfragemix ändern sich mit der Zeit wegen saisonalen Mustern und Trends, sowie unvorhergesehenen Lastspitzen bei den Nutzeranfragen. Variierende Arbeitslasten führen dazu, dass sich die Ressourcenanforderungen an die darunterliegende Hardware-Infrastruktur häufig ändern. Virtualisierungstechniken erlauben die gemeinsame Nutzung und bedarfsgesteuerte Zuteilung von Hardware-Ressourcen zwischen mehreren Anwendungen. In diesem Zusammenhang sollte die Zuteilung von Ressourcen an virtualisierte Anwendungen fortwährend in einer elastischen Art und Weise angepasst werden, um sicherzustellen, dass "zu jedem Zeitpunkt die verfügbaren Ressourcen dem derzeitigen Bedarf möglichst genau entsprechen" (Herbst et al., 2013). Autonome Ansätze zur Ressourcenverwaltung versprechen eine deutliche Steigerung der Ressourceneffizienz wobei Verletzungen der Anforderungen hinsichtlich Performanz und Verfügbarkeit bei Lastspitzen vermieden werden. Herkömmliche Ansätze zur autonomen Ressourcenverwaltung nutzen feste Regeln (z.B., Amazon EC2), die vordefinierte Rekonfigurationen durchführen sobald eine Metrik einen bestimmten Schwellwert erreicht (z.B., hohe Ressourcenauslastung oder ungleichmäßige Lastverteilung). Viele geschäftskritische Anwendungen unterliegen jedoch Zielvorgaben hinsichtlich der Dienstgüte (SLO, engl. Service Level Objectives), die auf Performanzmetriken der Anwendung definiert sind (z.B., Antwortzeit oder Durchsatz). Die Bestimmung von Schwellwerten, sodass die Ende-zu-Ende Anwendungs-SLOs erfüllt werden, stellt aufgrund des komplexen Zusammenspiels zwischen der Ressourcenzuteilung und der Performanz einer Anwendung eine bedeutende Herausforderung dar. Des Weiteren sind Ansätze basierend auf Schwellwerten inhärent anfällig für Oszillationen, die zu überflüssigen Rekonfigurationen führen können. Um die Schwächen schwellwertbasierter Ansätze zu lösen und einen vollständig automatisierten Ansatz zur dynamischen Steuerung von Ressourcenzuteilungen virtualisierter Anwendungen zu ermöglichen, bedarf es modellbasierter Ansätze, die den Einfluss einer Rekonfiguration auf die Performanz einer Anwendung im Voraus vorhersagen können. Bestehende modellbasierte Ansätze sind jedoch stark eingeschränkt hinsichtlich ihrer Lernfähigkeiten. Sie erfordern entweder vollständige Performanzmodelle der Anwendung als Eingabe oder nutzen vorbestimmte Modellstrukturen und lernen nur bestimmte Modellparameter auf Basis von empirischen Daten zur Laufzeit. Erstere erfordern hohe manuelle Aufwände und eine tiefe Systemkenntnis um die Performanzmodelle zu erstellen. Letztere bieten nur eingeschränkte Möglichkeiten um die Besonderheiten von komplexen und heterogenen Systemarchitekturen zu erfassen. Diese Arbeit stellt einen selbstwahrnehmenden (engl. self-aware) Ansatz zur Ressourcenverwaltung in virtualisierten Rechenzentren vor. In diesem Zusammenhang bedeutet Selbstwahrnehmung, dass der Ansatz automatisch Performanzmodelle der Anwendung und der virtualisierten Infrastruktur lernt Basierend auf diesen Modellen entscheidet er autonom wie die Ressourcenzuteilungen angepasst werden, um die Anwendungs-SLOs zu erfüllen. Das Lernen von Performanzmodellen erfordert sowohl die Extraktion der Modellstruktur, die die Systemarchitektur abbildet, als auch die Schätzung von Modellparametern, wie zum Beispiel der Ressourcenverbräuche einzelner Funktionen. Die Schätzung der Ressourcenverbräuche stellt hier eine zentrale Herausforderung dar, da diese in den meisten Systemen nicht direkt gemessen werden können. Die wissenschaftlichen Hauptbeiträge dieser Arbeit sind wie folgt: - Eine Referenzarchitektur, die das Lernen von Modellen in virtualisierten Systemen während des Betriebs ermöglicht. Unsere Referenzarchitektur basiert auf einer Menge von Modellextraktionsagenten. Jeder Agent fokussiert sich auf bestimmte Aufgaben um automatisch ein Modellskeleton, das sein lokales Wissen über das System erfasst, zu erstellen und zu aktualisieren. Jeder Agent arbeitet mit anderen Agenten zusammen um die strukturellen Teile eines globalen Performanzmodells des Systems zu extrahieren. Die Rereferenzarchitektur definiert unterschiedliche Agentenrollen und beinhaltet einen modellbasierten Mechanismus, der die Kooperation unterschiedlicher Agenten ermöglicht. Die Agenten können als Teil virtuellen Appliances gebündelt werden und können dabei maßgeschneidertes Wissen über die Software-Strukturen in dieser virtuellen Appliance beinhalten. - Eine Methode zur fortwährenden statistischen Schätzung von Ressourcenverbräuchen. Der Ressourcenverbrauch (engl. resource demand) einer Anfrage, die von einer Anwendung verarbeitet wird, entspricht der Zeit, die an einer spezifischen Ressource im System (z.B., CPU oder I/O-Gerät) verbraucht wird. Eine Anfrage kann dabei eine beliebige Arbeitseinheit, die von einem System verarbeitet wird, darstellen (z.B. eine Webseitenanfrage, eine Datenbanktransaktion, oder ein Stapelverarbeitungsauftrag). Die vorliegende Arbeit bietet eine Systematisierung existierender Ansätze zur statistischen Schätzung von Ressourcenverbräuchen und führt einen umfangreichen, auf Experimenten aufbauenden Vergleich zur Bewertung der Genauigkeit dieser Ansätze durch. Es wird eine neuartige Methode zur automatischen Auswahl eines Schätzverfahrens vorgeschlagen und gezeigt, dass diese die Robustheit und Genauigkeit der geschätzten Ressourcenverbräuche maßgeblich verbessert. - Modellbasierte Regler für das autonome, vertikale Skalieren von virtualisierten Anwendungen. Es werden zwei Regler entworfen, die auf modellbasierten Entscheidungstechniken basieren, um Anwendungen zur Laufzeit vertikal in Übereinstimmung mit Anwendungs-SLOs zu skalieren. Die Regler nutzen das Wissen aus automatisch extrahierten Performanzmodellen bei der Bestimmung notwendiger Rekonfigurationen. Der erste Regler fügt virtuelle CPUs zu Anwendungen hinzu und entfernt sie wieder in Abhängigkeit vom aktuellen Bedarf. Er nutzt ein geschichtetes Performanzmodell, um bei der Bestimmung der benötigten Ressourcen die Konkurrenzsituation der physikalischen Ressourcen zu beachten. Der zweite Regler passt Ressourcenzuteilungen proaktiv an, um die Verfügbarkeit einer Anwendung während Lastspitzen sicherzustellen und Rekonfigurationen unter großer Last zu vermeiden. Die Arbeit demonstriert die Anwendbarkeit unseres Ansatzes in aktuellen virtualisierten Umgebungen und zeigt seine Effektivität bei der Erhöhung der Ressourceneffizienz und der Verbesserung der Anwendungsperformanz und -verfügbarkeit unter zeitabhängigen Arbeitslasten. Die Evaluation des Ansatzes basiert auf zwei Fallstudien, die repräsentativ für gängige Unternehmensanwendungen in virtualisierten Rechenzentren sind. In den Fallstudien wurde eine Reduzierung der benötigten CPU-Ressourcen von bis zu 23% und der Anzahl der Rekonfigurationen von bis zu 95% im Vergleich zu regel-basierten Ansätzen erreicht, bei gleichzeitiger Erfüllung der Anwendungs-SLOs. Mit Hilfe von Vorhersagetechniken für die Arbeitslast konnten außerdem aufwändige Rekonfigurationen (z.B., Änderungen bei der Menge an zugewiesenem Arbeitsspeicher) so geplant werden, dass sie in Phasen geringer Last durchgeführt werden. Dadurch konnten deren Auswirkungen auf die Verfügbarkeit der Anwendung um mehr als 80% verringert werden bei gleichzeitiger Verbesserung der Anwendungsperformanz verglichen mit einem reaktiven Regler. Die Methoden und Techniken zur Schätzung von Ressourcenverbräuchen und zur vertikalen Skalierung von Anwendungen wurden in enger Zusammenarbeit mit VMware und Google entwickelt und evaluiert. KW - Cloud Computing KW - Virtualisierung KW - Leistungsbewertung KW - Autonomic Computing KW - Self-Aware Computing KW - Model extraction Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-153754 ER - TY - JOUR A1 - Sperlich, Billy A1 - Wallmann-Sperlich, Birgit A1 - Zinner, Christoph A1 - Von Stauffenberg, Valerie A1 - Losert, Helena A1 - Holmberg, Hans-Christer T1 - Functional High-intensity Circuit Training Improves Body Composition,Peak Oxygen Uptake, Strength, and Alters Certain Dimensions of Quality of Life in Overweight Women JF - Frontiers in Physiology N2 - The effects of circuit-like functional high-intensity training (Circuit\(_{HIIT}\)) alone or in combination with high-volume low-intensity exercise (Circuit\(_{combined}\)) on selected cardio-respiratory and metabolic parameters, body composition, functional strength and the quality of life of overweight women were compared. In this single-center, two-armed randomized, controlled study, overweight women performed 9-weeks (3 sessions·wk\(^{−1}\)) of either Circuit\(_{HIIT}\) (n = 11), or Circuit\(_{combined}\) (n = 8). Peak oxygen uptake and perception of physical pain were increased to a greater extent (p < 0.05) by Circuit\(_{HIIT}\), whereas Circuit\(_{combined}\) improved perception of general health more (p < 0.05). Both interventions lowered body mass, body-mass-index, waist-to-hip ratio, fat mass, and enhanced fat-free mass; decreased ratings of perceived exertion during submaximal treadmill running; improved the numbers of push-ups, burpees, one-legged squats, and 30-s skipping performed, as well as the height of counter-movement jumps; and improved physical and social functioning, role of physical limitations, vitality, role of emotional limitations, and mental health to a similar extent (all p < 0.05). Either forms of these multi-stimulating, circuit-like, multiple-joint training can be employed to improve body composition, selected variables of functional strength, and certain dimensions of quality of life in overweight women. However, Circuit\(_{HIIT}\) improves peak oxygen uptake to a greater extent, but with more perception of pain, whereas Circuit\(_{Combined}\) results in better perception of general health. KW - power training KW - aerobic fitness KW - body composition KW - female KW - functional training KW - interval training Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-171015 VL - 8 IS - 172 ER - TY - JOUR A1 - Sperlich, Billy A1 - Holmberg, Hans-Christer T1 - The responses of elite athletes to exercise: an all-day, 24-h integrative view is required! JF - Frontiers in Physiology N2 - No abstract available. KW - physiological KW - athletes KW - wearable sensors KW - training intensity distribution KW - monitoring KW - biofeedback Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-158655 VL - 8 IS - 564 ER - TY - JOUR A1 - Sperlich, Billy A1 - Düking, Peter A1 - Holmberg, Hans-Christer T1 - A SWOT analysis of the use and potential misuse of implantable monitoring devices by athletes JF - Frontiers in Physiology N2 - Kein Abstract vorhanden. KW - ingestible sensor KW - sensor assessment KW - implant KW - implantable neurostimulators KW - athletes Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-158742 VL - 8 IS - 629 ER - TY - JOUR A1 - Sperlich, Billy A1 - Becker, Martin A1 - Hotho, Andreas A1 - Wallmann-Sperlich, Birgit A1 - Sareban, Mahdi A1 - Winkert, Kay A1 - Steinacker, Jürgen M. A1 - Treff, Gunnar T1 - Sedentary behavior among national elite rowers during off-training — a pilot study JF - Frontiers in Physiology N2 - The aim of this pilot study was to analyze the off-training physical activity (PA) profile in national elite German U23 rowers during 31 days of their preparation period. The hours spent in each PA category (i.e., sedentary: <1.5 metabolic equivalents (MET); light physical activity: 1.5–3 MET; moderate physical activity: 3–6 MET and vigorous intense physical activity: >6 MET) were calculated for every valid day (i.e., >480 min of wear time). The off-training PA during 21 weekdays and 10 weekend days of the final 11-week preparation period was assessed by the wrist-worn multisensory device Microsoft Band II (MSBII). A total of 11 rowers provided valid data (i.e., >480 min/day) for 11.6 week days and 4.8 weekend days during the 31 days observation period. The average sedentary time was 11.63 ± 1.25 h per day during the week and 12.49 ± 1.10 h per day on the weekend, with a tendency to be higher on the weekend compared to weekdays (p = 0.06; d = 0.73). The average time in light, moderate and vigorous PA during the weekdays was 1.27 ± 1.15, 0.76 ± 0.37, 0.51 ± 0.44 h per day, and 0.67 ± 0.43, 0.59 ± 0.37, 0.53 ± 0.32 h per weekend day. Light physical activity was higher during weekdays compared to the weekend (p = 0.04; d = 0.69). Based on our pilot study of 11 national elite rowers we conclude that rowers display a considerable sedentary off-training behavior of more than 11.5 h/day. KW - recovery KW - sedentary behavior KW - accelerometer KW - microsoft band 2 KW - multi-sensor KW - wearable Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-158753 VL - 8 IS - 655 ER - TY - THES A1 - Spenst, Peter T1 - Xylylene Bridged Perylene Bisimide Cyclophanes and Macrocycles T1 - Xylol verbrückte Perylenbisimid Cyclophane und Makrozyklen N2 - This work is concerned with the syntheses and photophysical properties of para-xylylene bridged macrocycles nPBI with ring sizes from two to nine PBI units, as well as the complexation of polycyclic aromatic guest compounds. With a reduced but substantial fluorescence quantum yield of 21% (in CHCl3) the free host 2PBI(4-tBu)4 can be used as a dual fluorescence probe. Upon encapsulation of rather electron-poor guests the fluorescence quenching interactions between the chromophores are prevented, leading to a significant fluorescence enhancement to > 90% (“turn-on”). On the other hand, the addition of electron-rich guest molecules induces an electron transfer from the guest to the electron-poor PBI chromophores and thus quenches the fluorescence entirely (“turn-off”). The photophysical properties of the host-guest complexes were studied by transient absorption spectroscopy. These measurements revealed that the charge transfer between guest and 2PBI(4-tBu)4 occurs in the “normal region” of the Marcus-parabola with the fastest charge separation rate for perylene. In contrast, the charge recombination back to the PBI ground state lies far in the “inverted region” of the Marcus-parabola. Beside complexation of planar aromatic hydrocarbons into the cavity of the cyclophanes an encapsulation of fullerene into the cyclic trimer 3PBI(4-tBu)4 was observed. 3PBI(4-tBu)4 provides a tube-like structure in which the PBI subunits represent the walls of those tubes. The cavity has the optimal size for hosting fullerenes, with C70 fitting better than C60 and a binding constant that is higher by a factor of 10. TA spectroscopy in toluene that was performed on the C60@3PBI(4-tBu)4 complex revealed two energy transfer processes. The first one comes from the excited PBI to the fullerene, which subsequently populates the triplet state. From the fullerene triplet state a second energy transfer occurs back to the PBI to generate the PBI triplet state. In all cycles that were studied by TA spectroscopy, symmetry-breaking charge separation (SB-CS) was observed in dichloromethane. This process is fastest within the PBI cyclophane 2PBI(4-tBu)4 and slows down for larger cycles, suggesting that the charge separation takes place through space and not through bonds. The charges then recombine to the PBI triplet state via a radical pair intersystem crossing (RP-ISC) mechanism, which could be used to generate singlet oxygen in yields of ~20%. By changing the solvent to toluene an intramolecular folding of the even-numbered larger cycles was observed that quenches the fluorescence and increases the 0-1 transition band in the absorption spectra. Force field calculations of 4PBI(4-tBu)4 suggested a folding into pairs of dimers, which explains the remarkable odd-even effect with respect to the number of connected PBI chromophores and the resulting alternation in the absorption and fluorescence properties. Thus, the even-numbered macrocycles can fold in a way that all chromophores are in a paired arrangement, while the odd-numbered cycles have open conformations (3PBI(4-tBu)4, 5PBI(4-tBu)4, 7PBI(4-tBu)4) or at least additional unpaired PBI unit (9PBI(4-tBu)4). With these experiments we could for the first time give insights in the interactions between cyclic PBI hosts and aromatic guest molecules. Associated with the encapsulation of guest molecules a variety of possible applications can be envisioned, like fluorescence sensing, chiral recognition and photodynamic therapy by singlet oxygen generation. Particularly, these macrocycles provide photophysical relaxation pathways of PBIs, like charge separation and recombination and triplet state formation that are hardly feasible in monomeric PBI dyes. Furthermore, diverse compound specific features were found, like the odd-even effect in the folding process or the transition of superficial nanostructures of the tetrameric cycle influenced by the AFM tip. The comprehensive properties of these macrocycles provide the basis for further oncoming studies and can serve as an inspiration for the synthesis of new macrocyclic compounds. N2 - In dieser Arbeit wurde die Synthese para-Xylol-verbrückter Makrozyklen nPBI mit Ringgrößen von zwei bis neun PBI Einheiten beschrieben und deren photophysikalische Eigenschaften sowie Komplexierungsvermögen für polyzyklische aromatische Gastverbindungen analysiert. Mit einer reduzierten, aber noch substantiellen Fluoreszenzquantenausbeute von 21% in CHCl3 eignet sich der freie Wirt 2PBI(4-tBu)4 als dualer Fluoreszenzsensor. Durch die Aufnahme von elektronenarmen Gästen wird die zur Fluoreszenzlöschung führende Wechselwirkung zwischen den Chromophoren unterbunden, was sich in einer deutlichen Steigerung der Fluoreszenzquantenausbeute auf > 90% widerspiegelt („turn-on”). Andererseits führt die Zugabe elektronenreicher Gäste zu einem Elektronentransfer vom Gast auf die elektronenarmen PBI-Chromophore und quencht die Fluoreszenz damit nahezu vollständig („turn-off”). Die photophysikalischen Eigenschaften der Wirt-Gast Komplexe wurden mittels transienter Absorptionsspektroskopie weitergehend untersucht. Diese Studien zeigten, dass die Ladungstrennung zwischen Gast und 2PBI(4-tBu)4 in der „normalen Region“ der Marcus-Parabel stattfindet mit der schnellsten Ladungstrennungsrate für Perylen. Im Gegensatz dazu liegt die Ladungsrekombination zurück zum PBI Grundzustand weit in der „invertierten Region“ der Marcus-Parabel. Neben der Komplexierung flacher aromatischer Kohlenwasserstoffe in die Kavitäten der Cyclophane konnte auch die Aufnahme von Fullerenen in das zyklische Trimer 3PBI(4 tBu)4 beobachtet werden. 3PBI(4-tBu)4 weist eine röhrenartige Struktur auf, in der die PBI-Untereinheiten die Wände der Röhren darstellen. Damit hat die Kavität die optimale Größe für die Aufnahme von Fullerenen, wobei C70 besser hinein passt als C60 und damit eine um den Faktor 10 höhere Bindungskonstante besitzt. Transiente Absorptions-spektroskopie des C60@3PBI(4-tBu)4 Komplexes zeigte in Toluol zwei Energietransfer-prozesse auf. Der erste erfolgt vom angeregten PBI zum Fulleren, welches daraufhin den Triplettzustand populiert. Vom Fulleren-Triplettzustand erfolgt ein zweiter Energie-transfer zurück zum PBI, was schließlich im PBI-Triplett Zustand mündet. Für alle mittels transienter Absorptionsspektroskopie untersuchten Zyklen konnte eine symmetriebrechende Ladungstrennung in Dichlormethan beobachtet werden. Dieser Prozess ist für das PBI Cyclophan 2PBI(4-tBu)4 am schnellsten und wird mit zunehmender Ringgröße langsamer. Demnach ist die Ladungstrennung abhängig von der räumlichen Nähe der PBI Chromophore und nicht von deren Verbrückung. Im Anschluss erfolgt eine Ladungsrekombination zum PBI-Triplettzustand über ein Radikalpaar (radical pair intersystem crossing RP-ISC-Mechanismus), was zur Gewinnung von Singulettsauerstoff in Ausbeuten von ~20% genutzt werden konnte. Bei Verwendung von Toluol als Lösungsmittel wurde eine intramolekulare Faltung der geradzahligen größeren Zyklen beobachtet, wodurch die Fluoreszenz gequencht und die 0-1 Übergangsbande der Absorption verstärkt wird. Kraftfeldberechnungen für 4PBI(4 tBu)4 legen eine Faltung zu Dimerpaaren nahe, welche den außergewöhnlichen gerade-ungerade Effekt bezogen auf die Anzahl der verknüpften PBI Chromophore und die daraus resultierende Alternanz in den Absorptions- und Fluoreszenzeigenschaften erklärt. Dementsprechend können die geradzahligen Makrozyklen in der Art falten, dass alle Chromophore in einer gepaarten Anordnung vorliegen, während die ungeradzahligen Zyklen offene Konformationen (3PBI(4 tBu)4, 5PBI(4 tBu)4, 7PBI(4 tBu)4) oder zumindest teilweise ungepaarte PBI-Einheiten (9PBI(4 tBu)4) aufweisen. Mit zunehmender Ringgröße erhöht sich der Anteil an gefalteten Untereinheiten, was dazu führt, dass sich die optischen Eigenschaften des ungeradzahligen 9PBI(4 tBu)4 Zyklus den vollständig gefalteten Systemen angleicht. Mit diesen Experimenten konnten wir erstmals Enblicke in die Wechselwirkungen zwischen zyklischen PBI-Wirten und aromatischen Gastmolekülen geben. Verbunden mit der Aufnahme von Gastmolekülen ist eine Reihe möglicher Anwendungen wie Fluoreszenzsensorik, Chiralitätserkennung und photodynamische Therapie über die Generierung von Singulettsauerstoff denkbar. Insbesondere ermöglichen diese Makrozyklen photophysikalische Relaxationspfade von PBIs wie die Ladungstrennung und –rekombination und die Ausbildung von Triplettzuständen, welche in monomeren PBI-Frabstoffen nur schwer realisierbar sind. Weiterhin konnten einige verbindungs-spezifische Eigenschaften gefunden werden, wie den gerade-ungerade Effekt im Faltungsprozess oder die für den tetrameren Zyklus gefundene Umwandlung von Oberflächennanostrukturen unter dem Einfluß der AFM-Spitze. Die reichhaltigen Eigenschaften dieser Makrozyklen bilden damit die Basis für weitergehende Untersuchungen und können als Inspiration für die Synthese neuer makrozyklischer Verbindungen dienen. KW - Supramolekulare Chemie KW - Wirt-Gast-Beziehung KW - Perylenbisimid KW - Energietransfer KW - Elektronentransfer KW - Perylene Bisimide KW - Energy Transfer KW - Electron Transfer KW - Elektronentransfer KW - Perylenderivate KW - Wirt-Gast-Komplex-Chemie Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-139015 ER - TY - THES A1 - Sonnenberg, Christoph T1 - Analyzing Technology-Enhanced Learning Processes: What Can Process Mining Techniques Contribute to the Evaluation of Instructional Support? T1 - Eine Analyse technologieunterstützter Lernprozesse: Welchen Beitrag kann Process Mining für die Bewertung instruktionaler Hilfe leisten? N2 - The current dissertation addresses the analysis of technology-enhanced learning processes by using Process Mining techniques. For this purpose, students’ coded think-aloud data served as the measurement of the learning process, in order to assess the potential of this analysis method for evaluating the impact of instructional support. The increasing use of digital media in higher education and further educational sectors enables new potentials. However, it also poses new challenges to students, especially regarding the self-regulation of their learning process. To help students with optimally making progress towards their learning goals, instructional support is provided during learning. Besides the use of questionnaires and tests for the assessment of learning, researchers make use increasingly of process data to evaluate the effects of provided support. The analysis of observed behavioral traces while learning (e.g., log files, eye movements, verbal reports) allows detailed insights into the student’s activities as well as the impact of interventions on the learning process. However, new analytical challenges emerge, especially when going beyond the analysis of pure frequencies of observed events. For example, the question how to deal with temporal dynamics and sequences of learning activities arises. Against this background, the current dissertation concentrates on the application of Process Mining techniques for the detailed analysis of learning processes. In particular, the focus is on the additional value of this approach in comparison to a frequency-based analysis, and therefore on the potential of Process Mining for the evaluation of instructional support. An extensive laboratory study with 70 university students, which was conducted to investigate the impact of a support measure, served as the basis for pursuing the research agenda of this dissertation. Metacognitive prompts supported students in the experimental group (n = 35) during a 40-minute hypermedia learning session; whereas the control group (n = 35) received no support. Approximately three weeks later, all students participated in another learning session; however, this time all students learned without any help. The participants were instructed to verbalize their learning activities concurrently while learning. In the three analyses of this dissertation, the coded think aloud data were examined in detail by using frequency-based methods as well as Process Mining techniques. The first analysis addressed the comparison of the learning activities between the experimental and control groups during the first learning session. This study concentrated on the research questions whether metacognitive prompting increases the number of metacognitive learning activities, whether a higher number of these learning activities corresponds with learning outcome (mediation), and which differences regarding the sequential structure of learning activities can be revealed. The second analysis investigated the impact of the individual prompts as well as the conditions of their effectiveness on the micro level. In addition to Process Mining, we used a data mining approach to compare the findings of both analysis methods. More specifically, we classified the prompts by their effectiveness, and we examined the learning activities preceding and following the presentation of instructional support. Finally, the third analysis considered the long-term effects of metacognitive prompting on the learning process during another learning session without support. It was the key objective of this study to examine which fostered learning activities and process patterns remained stable during the second learning session. Overall, all three analyses indicated the additional value of Process Mining in comparison to a frequency-based analysis. Especially when conceptualizing the learning process as a dynamic sequence of multiple activities, Process Mining allows identifying regulatory loops and crucial routing points of the process. These findings might contribute to optimizing intervention strategies. However, before drawing conclusions for the design of instructional support based on the revealed process patterns, additional analyses need to investigate the generalizability of results. Moreover, the application of Process Mining remains challenging because guidelines for analytical decisions and parameter settings in technology-enhanced learning context are currently missing. Therefore, future studies need to examine further the potential of Process Mining as well as related analysis methods to provide researchers with concrete recommendations for use. Nevertheless, the application of Process Mining techniques can already contribute to advance the understanding of the impact of instructional support through the use of fine-grained process data. N2 - Die vorliegende Dissertation beschäftigt sich mit der Analyse technologieunterstützter Lernprozesse unter Verwendung von Process Mining Methoden. Dabei werden kodierte Protokolle des lauten Denkens als Prozessmaß genutzt, um eine Bewertung des Potentials dieses Analyseansatzes für die Evaluation der Effekte instruktionaler Hilfe vornehmen zu können. Die zunehmende Verbreitung digitaler Medien in der Hochschulbildung und weiteren Ausbildungssektoren schafft neue Potentiale, allerdings auch neue Anforderungen an den Lerner, insbesondere an die Regulation seines Lernprozesses. Um ihn dabei zu unterstützen seinen Lernfortschritt optimal zu gestalten, wird ihm während des Lernens instruktionale Hilfe angeboten. Neben der Evaluation mittels Fragebögen und Testverfahren wird die Wirksamkeit der angebotenen Unterstützung zunehmend durch Prozessdaten bewertet. Die Analyse von beobachteten Verhaltensspuren während des Lernens (z.B. Logfiles, Blickbewegungen, Verbalprotokolle) ermöglicht einen detaillierten Einblick in die Lernhandlungen und die Folgen von Unterstützungsmaßnahmen. Allerdings stellen sich auch eine Reihe von neuen analytischen Herausforderungen, wie der Umgang mit zeitlichen Dynamiken und Sequenzen von Lernhandlungen, insbesondere wenn man über Häufigkeitsanalysen der beobachteten Ereignisse hinausgehen möchte. Vor diesem Hintergrund beschäftigt sich die vorliegende Arbeit mit der Anwendung von Process Mining Methoden zur detaillierten Betrachtung von Lernprozessen. Insbesondere der Mehrwert dieses Ansatzes gegenüber einer reinen Häufigkeitsanalyse und somit die Potentiale von Process Mining für die Evaluation von Fördermaßen sollen herausgestellt werden. Als Grundlage für die Bearbeitung der Fragestellung diente eine umfangreiche Laborstudie mit 70 Universitätsstudierenden, die durchgeführt wurde um die Effekte einer instruktionalen Fördermaßnahme zu prüfen. Die Probanden der Experimentalgruppe (n = 35) erhielten in einer 40-minütigen Hypermedia-Lernsitzung eine Förderung durch metakognitive Prompts, während die Kontrollgruppe (n = 35) ohne Hilfe lernte. In einer weiteren Lernsitzung drei Wochen später bearbeiteten alle Teilnehmer eine weitere Lerneinheit, diesmal ohne Unterstützung für alle Probanden. Während des Lernens wurden alle Teilnehmer instruiert, ihre Lernhandlungen kontinuierlich zu verbalisieren. Die kodierten Verbalprotokolle wurden in den drei Analysen dieser Dissertation detailliert mit Häufigkeits- und Process Mining Analysen untersucht. Die erste Analyse konzentrierte sich auf den Vergleich der Lernhandlungen der Experimental- und Kontrollgruppe während der ersten Sitzung. Es wurde den Fragen nachgegangen, ob metakognitive Prompts die Lerner dazu anregen mehr metakognitive Lernhandlungen auszuführen, ob eine höhere Anzahl dieser Lernhandlungen mit dem Lernerfolg zusammenhängt (Mediation) und welche Unterschiede sich in den Abfolgen der Lernhandlungen finden lassen. In der zweiten Analyse wurden die Effekte der einzelnen Prompts sowie die Bedingungen für ihre Wirksamkeit auf einer sehr detaillierten Ebene betrachtet. Zusätzlich zu Process Mining wurde auch eine Data Mining Methode eingesetzt, um deren Befunde zu vergleichen. Im Detail fanden eine Klassifikation der Prompts anhand ihrer Effektivität und eine Untersuchung der kodierten Lernaktivitäten vor und nach der Präsentation instruktionaler Hilfe statt. Schließlich untersuchte die dritte Analyse die langfristigen Effekte metakognitiver Prompts auf den Lernprozess in einer weiteren Lernsitzung ohne Unterstützung. Hier stand die Frage im Mittelpunkt, welche geförderten Lernaktivitäten und Prozessmuster während der zweiten Lernsitzung stabil blieben. Insgesamt belegen die Ergebnisse aller drei durchgeführten Analysen den Mehrwert von Process Mining im Vergleich zu reinen häufigkeitsbasierten Analysemethoden. Insbesondere unter Betrachtung des Lernprozesses als dynamische Abfolge von mehreren Lernhandlungen, ermöglicht Process Mining die Identifikation von Regulationsschleifen und zentralen Verzweigungen des Prozesses. Diese Befunde könnten zur Optimierung von Interventionen verwendet werden. Bevor aus den aufgedeckten Prozessmustern Schlussfolgerungen für die Gestaltung instruktionaler Hilfe gezogen werden können, müssen allerdings weitere Analysen erst noch die Generalisierbarkeit der Befunde belegen. Darüber hinaus bleibt die Anwendung von Process Mining herausfordernd, da derzeit keine Richtlinien für analytische Entscheidungen und Parametereinstellungen für technologieunterstützte Lernkontexte vorhanden sind. Darum müssen in Zukunft weitere Studien das Potential von Process Mining und verwandten Analysemethoden betrachten, um Forschern konkrete Anwendungsempfehlungen zur Verfügung stellen zu können. Generell kann Process Mining aber bereits jetzt dazu beitragen, das Verständnis der Auswirkungen instruktionaler Hilfe auf der Prozessebene voran zu treiben. KW - Selbstgesteuertes Lernen KW - Prozessanalyse KW - Process Mining KW - Metacognitive Prompting KW - Instructional Support KW - Technology-Enhanced Learning KW - Self-Regulated Learning KW - Metakognition KW - Lautes Denken Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-152354 ER - TY - THES A1 - Sommerlandt, Frank M. J. T1 - Mechanisms of visual memory formation in bees: About immediate early genes and synaptic plasticity T1 - Mechanismen der visuellen Gedächtnisbildung bei Bienen: Über unmittelbar früh exprimierte Gene und synaptische Plastizität N2 - Animals form perceptual associations through processes of learning, and retain that information through mechanisms of memory. Honeybees and bumblebees are classic models for insect perception and learning, and despite their small brains with about one million neurons, they are organized in highly social colonies and possess an astonishing rich behavioral repertoire including navigation, communication and cognition. Honeybees are able to harvest hundreds of morphologically divergent flower types in a quick and efficient manner to gain nutrition and, back in the hive, communicate discovered food sources to nest mates. To accomplish such complex tasks, bees must be equipped with diverse sensory organs receptive to stimuli of different modalities and must be able to associatively learn and memorize the acquired information. Particularly color vision plays a prominent role, e.g. in navigation along landmarks and when bees identify inflorescences by their color signals. Once acquired, bees are known to retain visual information for days or even months. Numerous studies on visual perception and color vision have been conducted in the past decades and largely revealed the information processing pathways in the brain. In contrast, there are no data available on how the brain may change in the course of color learning experience and whether pathways differ for coarse and fine color learning. Although long-term memory (LTM) storage is assumed to generally include reorganization of the neuronal network, to date it is unclear where in the bee brain such changes occur in the course of color learning and whether visual memories are stored in one particular site or decentrally distributed over different brain domains. The present dissertation research aimed to dissect the visual memory trace in bees that is beyond mere stimulus processing and therefore two different approaches were elaborated: first, the application of immediate early genes (IEG) as genetic markers for neuronal activation to localize early processes underlying the formation of a stable LTM. Second, the analysis of late consequences of memory formation, including synaptic reorganization in central brain areas and dependencies of color discrimination complexity. Immediate early genes (IEG) are a group of rapidly and transiently expressed genes that are induced by various types of cellular stimulation. A great number of different IEGs are routinely used as markers for the localization of neuronal activation in vertebrate brains. The present dissertation research was dedicated to establish this approach for application in bees, with focus on the candidate genes Amjra and Amegr, which are orthologous to the two common vertebrate IEGs c-jun and egr-1. First the general requirement of gene transcription for visual LTM formation was proved. Bumblebees were trained in associative proboscis extension response (PER) conditioning to monochromatic light and subsequently injected with an inhibitor of gene transcription. Memory retention tests at different intervals revealed that gene transcription is not required for the formation of a mid-term memory, but for stable LTM. Next, the appliance of the candidate genes was validated. Honeybees were exposed to stimulation with either alarm pheromone or a light pulse, followed by qPCR analysis of gene expression. Both genes differed in their expression response to sensory exposure: Amjra was upregulated in all analyzed brain parts (antennal lobes, optic lobes and mushroom bodies, MB), independent from stimulus modality, suggesting the gene as a genetic marker for unspecific general arousal. In contrast, Amegr was not significantly affected by mere sensory exposure. Therefore, the relevance of associative learning on Amegr expression was assessed. Honeybees were trained in visual PER conditioning followed by a qPCR-based analysis of the expression of all three Amegr isoforms at different intervals after conditioning. No learning-dependent alteration of gene expression was observed. However, the presence of AmEgr protein in virtually all cerebral cell nuclei was validated by immunofluorescence staining. The most prominent immune-reactivity was detected in MB calyx neurons. Analysis of task-dependent neuronal correlates underlying visual long-term memory was conducted in free-flying honeybees confronted with either absolute conditioning to one of two perceptually similar colors or differential conditioning with both colors. Subsequent presentation of the two colors in non-rewarded discrimination tests revealed that only bees trained with differential conditioning preferred the previously learned color. In contrast, bees of the absolute conditioning group chose randomly among color stimuli. To investigate whether the observed difference in memory acquisition is also reflected at the level of synaptic microcircuits, so called microglomeruli (MG), within the visual domains of the MB calyces, MG distribution was quantified by whole-mount immunostaining three days following conditioning. Although learning-dependent differences in neuroarchitecture were absent, a significant correlation between learning performance and MG density was observed. Taken together, this dissertation research provides fundamental work on the potential use of IEGs as markers for neuronal activation and promotes future research approaches combining behaviorally relevant color learning tests in bees with examination of the neuroarchitecture to pave the way for unraveling the visual memory trace. N2 - Tiere erlangen Informationen über die Umwelt durch Lernprozesse und speichern diese Informationen durch Mechanismen der Gedächtnisbildung. Honigbienen und Hummeln stellen klassische Modellorganismen zur Untersuchung von sensorischer Perzeption und Lernvorgängen dar. Trotz ihres kleinen, lediglich etwa eine Millionen Nervenzellen umfassenden Gehirns sind diese hoch sozialen Bienen zu erstaunlichen Verhaltensleistungen fähig, welche komplexe Navigation, Kommunikation und Kognition einschließen. Auf der Suche nach Futterquellen navigieren Honigbienen über große Distanzen, ohne dabei die Lage ihres Nestes aus dem Gedächtnis zu verlieren. Außerdem sammeln sie hoch effizient Futter an zahlreichen morphologisch divergenten Blütentypen und kommunizieren neu erschlossene Futterstellen anderen Sammelbienen im Nest. Zur Bewältigung solch komplexer Aufgaben stehen Bienen diverse sensorische Organe zur Verfügung, womit sie Reize unterschiedlicher Modalitäten wahrnehmen und verarbeiten können. Außerdem sind sie zu assoziativem Lernen und dem Speichern und Abrufen von Informationen in der Lage. Insbesondere der Sehsinn spielt für Bienen eine große Rolle, wenn sie sich beispielsweise anhand von Landmarken orientieren oder farbige Blütensignale wahrnehmen. Einmal erlernte visuelle Informationen können mitunter über Tage und Monate hinweg gespeichert werden. Während die Aufnahme und Verarbeitung von Farbinformationen im Bienengehirn bereits gut untersucht wurde, ist über räumliche und zeitliche Abläufe der Speicherung solcher Informationen wenig bekannt. Mit der vorliegenden Arbeit wurde versucht, experimentellen Zugang zur visuellen Gedächtnisspur in Bienen zu bekommen. Die Bildung eines Langzeitgedächtnisses (LZG) geht im Allgemeinen mit Umstrukturierungsprozessen im neuronalen Netzwerk einher. Bislang ist es jedoch unklar, wo im Gehirn diese Veränderungen im Laufe des Farbenlernens stattfinden und ob Informationen in einem zentralen Bereich gespeichert oder dezentral über verschiedene Gehirndomänen verteilt werden. Unterschiedliche Verarbeitungsbahnen werden für das Erlernen grober und feiner Farbunterschiede vermutet. Mit der vorliegenden Arbeit wurden zwei Versuchsansätze gewählt, womit die Lage des visuellen Gedächtnisses untersucht werden sollte: Zum einen wurde die Eignung unmittelbar exprimierter Gene (immediate early genes, IEG) als genetische Marker für neuronale Aktivität untersucht, um damit frühe Prozesse der Bildung eines LZG lokalisieren zu können. Zum anderen wurden Spätfolgen der Bildung eines LZG auf die Organisation synaptischer Netzwerke im zentralen Gehirn untersucht und der Einfluss der Komplexität einer Aufgabenstellung auf diese Organisation betrachtet. IEGs sind eine Gruppe von Genen, die in Antwort auf zelluläre Stimulierung schnell und vorübergehend exprimiert werden. Zahlreiche IEGs werden bereits routinemäßig als Marker für neuronale Aktivierung im Gehirn von Vertebraten eingesetzt und mit der vorliegenden Arbeit sollten die Möglichkeiten evaluiert werden, diesen Ansatz auch in Bienen nutzbar zu machen. Hierzu wurde zunächst ermittelt, ob die Transkription von Genen überhaupt für die Ausbildung eines visuellen LZG von Nöten ist. Hummeln wurden mit Hilfe der Proboscis-Streckreaktion (PER) trainiert, monochromatisches Licht mit Zuckerbelohnung zu assoziieren. Nach erfolgtem Training wurde die Gentranskription pharmazeutisch gehemmt und die Gedächtnisleistung der Hummeln zu zwei Zeitpunkten ermittelt, die das Mittelzeitgedächtnis (MZG) bzw. LZG repräsentieren. Es zeigte sich, dass Gentranskription nicht für die Ausbildung des MZG, jedoch für die des LZG unabdingbar ist. Als nächstes wurden mögliche Kandidatengene validiert. Honigbienen wurden entweder mit Alarmpheromon oder einem Lichtimpuls stimuliert. Die Bienengehirne wurden anschließend seziert und mittels qPCR die Expression von Amjra und Amegr untersucht, zweier Gene, deren orthologe Vertreter c-jun bzw. egr-1 gebräuchliche IEGs in Vertebraten darstellen. Während durch beide Reize die Expression von Amjra in allen Gehirnbereichen (Antenalloben, optische Loben und Pilzkörper) induziert wurde, konnten keine Veränderungen in der Expression von Amegr festgestellt werden. Daraufhin wurde überprüft, ob die Induktion von Amegr möglicherweise abhängig von assoziativen Lernvorgängen ist. Honigbienen wurden mittels PER visuell konditioniert, bevor die Pilzkörper zu verschiedenen Zeiten nach dem Training isoliert und mittels qPCR auf die Expression von Amegr Isoformen untersucht wurden. Hierbei konnte kein Lerneffekt auf die Amegr-Expression nachgewiesen werden. Die Analyse Aufgaben-abhängiger neuronaler Korrelate, die der Bildung des visuellen LZG zugrunde liegen, wurde anhand frei-fliegender Honigbienen durchgeführt. Diese wurden entweder absolut konditioniert auf eine von zwei ähnlichen Farben, oder differentiell auf die Diskriminierung beider Farben. Bei der anschließenden unbelohnten Präsentation beider Farben bevorzugte nur die differentiell trainierte Gruppe die zuvor gelernte Farbe, während absolut konditionierte Bienen zufällig wählten. Um zu ermitteln, ob die beobachteten Unterschiede im Verhalten auch auf neuroanatomischer Ebene repräsentiert werden, wurden alle Bienen nach drei Tagen seziert und mittels Immunfärbung synaptische Komplexe, so genannte Microglomeruli, im visuelle Informationen verarbeitenden Bereich der Pilzkörper quantifiziert. Der Vergleich zwischen den Versuchsgruppen legte keine signifikanten Unterschiede in der neuronalen Architektur offen, jedoch wurden mögliche Zusammenhänge zwischen Lernleistung und Microglomeruli-Dichte gefunden. Die vorliegende Arbeit bietet grundlegende Ergebnisse zum Potential von IEGs als Marker neuronaler Aktivität und unterstreicht die Bedeutung integrativer Versuchsansätze, welche Verhaltensuntersuchungen mit der molekularen und histologischen Analyse des Nervensystems verbinden, um letztlich das visuelle Gedächtnis im Bienengehirn lokalisieren zu können. KW - Biene KW - Langzeitgedächtnis KW - Bestäubung KW - Farbensehen KW - insect visual learning KW - long-term memory formation KW - mushroom body calyx microglomeruli KW - neuronal activation KW - IEG KW - Bienen Dressur Lernen KW - Pilzkörper KW - visuelles Langzeitgedächtnis KW - Genexpression KW - Bestäubung Pollination Honigbiene Hummel KW - Soziale Insekten Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-136997 ER - TY - THES A1 - Slaby, Beate Magdalena T1 - Exploring the microbiome of the Mediterranean sponge \(Aplysina\) \(aerophoba\) by single-cell and metagenomics T1 - Untersuchungen am Mikrobiom des Mittelmeerschwamms \(Aplysina\) \(aerophoba\) mittels Einzelzell- und Metagenomik N2 - Sponges (phylum Porifera) are evolutionary ancient, sessile filter-feeders that harbor a largely diverse microbial community within their internal mesohyl matrix. Throughout this thesis project, I aimed at exploring the adaptations of these symbionts to life within their sponge host by sequencing and analyzing the genomes of a variety of bacteria from the microbiome of the Mediterranean sponge Aplysina aerophoba. Employed methods were fluorescence-activated cell sorting with subsequent multiple displacement amplification and single-cell / ‘mini-metagenome’ sequencing, and metagenomic sequencing followed by differential coverage binning. These two main approaches both aimed at obtaining genome sequences of bacterial symbionts of A. aerophoba, that were then compared to each other and to references from other environments, to gain information on adaptations to the host sponge environment and on possible interactions with the host and within the microbial community. Cyanobacteria are frequent members of the sponge microbial community. My ‘mini-metagenome’ sequencing project delivered three draft genomes of “Candidatus Synechococcus spongiarum,” the cyanobacterial symbiont of A. aerophoba and many more sponges inhabiting the photic zone. The most complete of these genomes was compared to other clades of this symbiont and to closely related free-living cyanobacterial references in a collaborative project published in Burgsdorf I*, Slaby BM* et al. (2015; *shared first authorship). Although the four clades of “Ca. Synechococcus spongiarum” from the four sponge species A. aerophoba, Ircinia variabilis, Theonella swinhoei, and Carteriospongia foliascens were approximately 99% identical on the level of 16S rRNA gene sequences, they greatly differed on the genomic level. Not only the genome sizes were different from clade to clade, but also the gene content and a number of features including proteins containing the eukaryotic-type domains leucine-rich repeats or tetratricopeptide repeats. On the other hand, the four clades shared a number of features such as ankyrin repeat domain-containing proteins that seemed to be conserved also among other microbial phyla in different sponge hosts and from different geographic locations. A possible novel mechanism for host phagocytosis evasion and phage resistance by means of an altered O antigen of the lipopolysaccharide was identified. To test previous hypotheses on adaptations of sponge-associated bacteria on a broader spectrum of the microbiome of A. aerophoba while also taking a step forward in methodology, I developed a bioinformatic pipeline to combine metagenomic Illumina short-read sequencing data with PacBio long-read data. At the beginning of this project, no pipelines to combine short-read and long-read data for metagenomics were published, and at time of writing, there are still no projects published with a comparable aim of un-targeted assembly, binning and analysis of a metagenome. I tried a variety of assembly programs and settings on a simulated test dataset reflecting the properties of the real metagenomic data. The developed assembly pipeline improved not only the overall assembly statistics, but also the quality of the binned genomes, which was evaluated by comparison to the originally published genome assemblies. The microbiome of A. aerophoba was studied from various angles in the recent years, but only genomes of the candidate phylum Poribacteria and the cyanobacterial sequences from my above-described project have been published to date. By applying my newly developed assembly pipeline to a metagenomic dataset of A. aerophoba consisting of a PacBio long-read dataset and six Illumina short-read datasets optimized for subsequent differential coverage binning, I aimed at sequencing a larger number and greater diversity of symbionts. The results of this project are currently in review by The ISME Journal. The complementation of Illumina short-read with PacBio long-read sequencing data for binning of this highly complex metagenome greatly improved the overall assembly statistics and improved the quality of the binned genomes. Thirty-seven genomes from 13 bacterial phyla and candidate phyla were binned representing the most prominent members of the microbiome of A. aerophoba. A statistical comparison revealed an enrichment of genes involved in restriction modification and toxin-antitoxin systems in most symbiont genomes over selected reference genomes. Both are defense features against incoming foreign DNA, which may be important for sponge symbionts due to the sponge’s filtration and phagocytosis activity that exposes the symbionts to high levels of free DNA. Also host colonization and matrix utilization features were significantly enriched. Due to the diversity of the binned symbiont genomes, a within-symbionts genome comparison was possible, that revealed three guilds of symbionts characterized by i) nutritional specialization on the metabolization of carnitine, ii) specialization on sulfated polysaccharides, and iii) apparent nutritional generalism. Both carnitine and sulfated polysaccharides are abundant in the sponge extracellular matrix and therefore available to the sponge symbionts as substrates. In summary, the genomes of the diverse community of symbionts in A. aerophoba were united in their defense features, but specialized regarding their nutritional preferences. N2 - Schwämme (Phylum Porifera) sind evolutionär alte, sessile Filtrierer, die eine äußerst vielfältige mikrobielle Gemeinschaft in ihrer internen Mesohylmatrix beherbergen. Das Ziel meiner Doktorarbeit war es, die Anpassungen dieser Symbionten an das Leben in ihrem Schwammwirt zu erforschen. Dazu habe ich die Genome einer Vielzahl von Bakterien aus dem Mikrobiom des Mittelmeer-Schwammes Aplysina aerophoba sequenziert und analysiert. Meine angewandten Methoden waren die fluoreszenzaktivierte Zellsortierung mit anschließender so genannter „multiple displacement amplification“ und Einzelzell- / „Mini-Metagenom“-Sequenzierung und metagenomischer Sequenzierung gefolgt von „differential coverage binning“. Diese beiden Ansätze zielten darauf ab, Genomsequenzen von bakteriellen Symbionten von A. aerophoba zu erhalten, die dann sowohl miteinander, als auch mit Referenzen aus anderen Habitaten verglichen wurden. So sollten Informationen gewonnen werden über Anpassungen an ein Leben im Wirtsschwamm und über mögliche Interaktionen mit dem Wirt und innerhalb der mikrobiellen Gemeinschaft. Cyanobakterien sind häufig Mitglieder der bakteriellen Gemeinschaft in Schwämmen. Mein "Mini-Metagenom"-Sequenzierprojekt lieferte drei Genom-Entwürfe von „Candidatus Synechococcus spongiarum,“ dem cyanobakteriellen Symbionten von A. aerophoba und vieler weiterer Schwämme, die die photische Zone bewohnen. Das vollständigste dieser Genome wurden mit anderen Kladen dieses Symbionten verglichen und mit nah verwandten, freien lebenden Cyanobakterien-Referenzen in Burgsdorf I *, Slaby BM * et al. (2015; * geteilte Erstautorenschaft). Obwohl die vier Kladen von „Ca. Synechococcus spongiarum“ aus den vier Schwammarten A. aerophoba, Ircinia variabilis, Theonella swinhoei und Carteriospongia foliascens auf der Ebene der 16S-rRNA-Gensequenzen zu etwa 99% identisch waren, unterschieden sie sich deutlich auf Genom-Ebene. Nicht nur die Genomgrößen waren von Klade zu Klade verschieden, sondern auch der Gengehalt und eine Reihe von Merkmalen, einschließlich Proteinen mit genannten „eukaryotic-like domains,“ leucinreiche „repeats“ oder Tetratricopeptid-„repeats“. Auf der anderen Seite teilten die vier Kladen eine Reihe von Merkmalen wie Ankyrin-„repeat“-Domänen-haltige Proteine, die auch in anderen Phyla von Schwammsymbionten in verschiedenen Wirtsschwämmen und aus verschiedenen geografischen Orten konserviert zu sein schienen. Ein möglicher neuartiger Mechanismus zur Phagozytose-Vermeidung und zur Phagenresistenz mittels eines veränderten O-Antigens des Lipopolysaccharids wurde identifiziert. Um vorherige Hypothesen über die Anpassung von Schwamm-assoziierten Bakterien auf ein breiteres Spektrum des Mikrobioms von A. aerophoba zu testen und gleichzeitig in der Methodik voran zu schreiten, entwickelte ich einen bioinformatischen Arbeitsablauf, um metagenomische Illumina-„short-read“-Sequenzdaten mit PacBio-„long-reads“ zu kombinieren. Zu Beginn dieses Projektes gab es keine veröffentlichte Methodik zur Verknüpfung von „short-reads“ und „long-reads“ für die Metagenomik, und auch jetzt gibt es keine veröffentlichten Projekte mit einem vergleichbaren Ziel von nicht-gezieltem „Assembly“, „Binning“ und Analyse eines Metagenoms. Ich habe eine Auswahl von „Assembly“-Programmen und Einstellungen auf einem simulierten Testdatensatz getestet, der die Eigenschaften der realen metagenomischen Daten widerspiegelt. Die entwickelte „Assembly“-Methode verbesserte nicht nur die Gesamtstatistik, sondern auch die Qualität der einzelnen, „gebinnten“ Genome, die durch Vergleich zu den ursprünglich veröffentlichten Genom-Sequenzen evaluiert wurde. Das Mikrobiom von A. aerophoba wurde in den letzten Jahren aus verschiedenen Blickwinkeln untersucht, aber nur Genome des Candidatus-Phylum Poribakterien und die Cyanobakteriensequenzen aus meinem oben beschriebenen Projekt wurden bisher veröffentlicht. Durch die Anwendung meiner neu entwickelten „Assembly“-Methodik auf einen metagenomischen Datensatz von A. aerophoba bestehend aus einem PacBio-„long-read“-Datensatz und sechs Illumina-„short-read“-Datensätzen, die für das anschließende „differential coverage binning“ optimiert waren, zielte ich darauf ab, eine größere Anzahl und Vielfalt von Symbionten zu sequenzieren. Die Ergebnisse dieses Projektes sind derzeit bei The ISME Journal in Review. Die Komplementierung von Illumina „short-read“ mit PacBio „long-read“-Sequenzdaten für das „binning“ dieses hochkomplexen Metagenoms hat die Gesamt-„assembly“-Statistik sowie die Qualität der „gebinnten“ Genome deutlich verbessert. Siebenunddreißig Genome aus 13 Bakterienphyla und Candidatus-Phyla wurden „gebinnt“, die die prominentesten Mitglieder des Mikrobioms von A. aerophoba darstellten. Ein statistischer Vergleich zeigte eine Anreicherung von Genen, die mit Restriktionsmodifikationen und Toxin-Antitoxin-Systemen zusammenhängen, in den meisten Symbionten-Genomen im Vergleich zu ausgewählten Referenzgenomen. Beides sind Mechanismen zur Verteidigung gegen eindringende Fremd-DNA, die für Schwamm-Symbionten aufgrund der Schwamm-Filtration und Phagozytose-Aktivität wichtig sein können, die die Symbionten hohen Konzentrationen von freier DNA aussetzen. Auch mögliche Wirtskolonisations- und Matrixnutzungsmechanismen waren signifikant angereichert. Wegen der Vielfalt der „gebinnten“ Symbionten-Genome war ein Genom-Vergleich innerhalb der Symbionten möglich, der drei Gilden von Symbionten zum Vorschein brachte, die gekennzeichnet waren durch i) Ernährungsspezialisierung auf die Metabolisierung von Carnitin, ii) Spezialisierung auf sulfatierte Polysaccharide und iii) scheinbaren Nahrungs-Generalismus. Sowohl Carnitin als auch sulfatierte Polysaccharide sind in der extrazellulären Schwammmatrix reichlich vorhanden und stehen so den Schwammsymbionten als Substrat zur Verfügung. Die Genome der diversen Symbionten-Gemeinschaft in A. aerophoba waren in ihren Verteidigungsmechanismen vereint, aber spezialisiert hinsichtlich ihrer Ernährung. KW - Metagenom KW - metagenomics KW - single-cell genomics KW - sponge microbiome KW - differential coverage binning KW - PacBio sequencing KW - Illumina HiSeq KW - hybrid assembly KW - Aplysina aerophoba KW - Mikroorganismus Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-151869 ER - TY - JOUR A1 - Skryabin, D.V. A1 - Kartashov, Y.V. A1 - Egorov, O.A. A1 - Sich, M. A1 - Chana, J.K. A1 - Tapia Rodriguez, L.E. A1 - Walker, P.M. A1 - Clarke, E. A1 - Royall, B. A1 - Skolnick, M.S. A1 - Krizhanovskii, D.N. T1 - Backward Cherenkov radiation emitted by polariton solitons in a microcavity wire JF - Nature Communications N2 - Exciton-polaritons in semiconductor microcavities form a highly nonlinear platform to study a variety of effects interfacing optical, condensed matter, quantum and statistical physics. We show that the complex polariton patterns generated by picosecond pulses in microcavity wire waveguides can be understood as the Cherenkov radiation emitted by bright polariton solitons, which is enabled by the unique microcavity polariton dispersion, which has momentum intervals with positive and negative group velocities. Unlike in optical fibres and semiconductor waveguides, we observe that the microcavity wire Cherenkov radiation is predominantly emitted with negative group velocity and therefore propagates backwards relative to the propagation direction of the emitting soliton. We have developed a theory of the microcavity wire polariton solitons and of their Cherenkov radiation and conducted a series of experiments, where we have measured polariton-soliton pulse compression, pulse breaking and emission of the backward Cherenkov radiation. KW - physics KW - polaritons KW - solitons Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-173046 VL - 8 ER - TY - THES A1 - Simin, Dmitrij T1 - Quantum Sensing with Highly Coherent Spin Centers in Silicon Carbide T1 - Quantensensorik mit hochkohärenten Spinzentren in Siliciumcarbid N2 - In the present work, the energetic structure and coherence properties of the silicon vacancy point defect in the technologically important material silicon carbide are extensively studied by the optically detected magnetic resonance (ODMR) technique in order to verify its high potential for various quantum applications. In the spin vacancy, unique attributes are arising from the C3v symmetry and the spin-3/2 state, which are not fully described by the standard Hamiltonian of the uniaxial model. Therefore, an advanced Hamiltonian, describing well the appearing phenomena is established and the relevant parameters are experimentally determined. Utilizing these new accomplishments, several quantum metrology techniques are proposed. First, a vector magnetometry scheme, utilizing the appearance of four ODMR lines, allows for simultaneous detection of the magnetic field strength and the tilting angle of the magnetic field from the symmetry axis of the crystal. The second magnetometry protocol utilizes the appearance of energetic level anticrossings (LAC) in the ground state (GS) energy levels. Relying only on the change in photoluminescence in the vicinity of this GSLACs, this all-optical method does not require any radio waves and hence provides a much easier operation with less error sources as for the common magnetometry schemes utilizing quantum points. A similar all-optical method is applied for temperature sensing, utilizing the thermal shift of the zero field splitting and consequently the anticrossing in the excited state (ES). Since the GSLACs show no dependence on temperature, the all-optical magnetometry and thermometry (utilizing the ESLACs) can be conducted subsequently on the same defect. In order to quantify the achievable sensitivity of quantum metrology, as well as to prove the potential of the Si-vacancy in SiC for quantum processing, the coherence properties are investigated by the pulsed ODMR technique. The spin-lattice relaxation time T1 and the spin-spin relaxation time T2 are thoroughly analyzed for their dependence on the external magnetic field and temperature. For actual sensing implementations, it is crucial to obtain the best signal-to-noise ratio without loss in coherence time. Therefore, the irradiation process, by which the defects are created in the crystal, plays a decisive role in the device performance. In the present work, samples irradiated with electrons or neutrons with different fluences and energies, producing different defect densities, are analyzed in regard to their T1 and T2 times at room temperature. Last but not least, a scheme to substantially prolong the T2 coherence time by locking the spin polarization with the dynamic decoupling Carr-Purcell-Meiboom-Gill (CPMG) pulse sequence is applied. N2 - In der vorliegenden Arbeit werden die energetische Struktur und die Kohärenzeigenschaften der Silizium Fehlstelle in dem technologisch relevanten Material Siliciumcarbid mit Hilfe der optisch detektierten Magnetresonanz (ODMR) Technik extensiv analysiert, um ihr außerordentliches Potential für verschiedene quanten-mechanische Anwendungen zu untermauern. Aus der C3v Symmetrie und dem 3/2 Spinsystem des Defekts entstehen einzigartige Attribute, die nur teilweise durch den Standard Hamiltonoperator des Modells einer einachsigen Symmetrie wahrheitsgemäß beschrieben werden. Aus diesem Grund wird ein weiterentwickelter Hamiltonoperator aufgestellt, welcher die auftretenden Eigenschaften genau wiedergibt. Aus experimentellen Messungen werden anschließend seine Parameter bestimmt. Das nun vorliegende genaue Verständnis der auftretenden Phänomene wird dazu genutzt, diverse Methoden zur Quantensensorik auszuarbeiten. Zuerst wird ein Schema für Vektormagnetometrie aufgestellt, welches sich das Auftreten von vier ODMR Linien zunutze macht. Die Methode ermöglicht simultane Detektion, sowohl von der Magnetfeldstärke, als auch von dem Winkel zwischen der Magnetfeldrichtung und der Symmetrieachse des Kristalls. Das zweite Magnetometrie protokoll nutzt das Auftreten von energetischen anticrossings (level anticrossing, LAC) im Grundzustand (ground state, GS). Durch das Verfolgen der Änderung der Photolumineszenz in der Nähe dieser GSLACs, braucht diese rein optische Technik keine Radiowellen und ist dementsprechend viel leichter umzusetzen und bietet weniger Fehlerquellen als die üblichen Magnetometriemethoden an Quantenpunkten. Eine ähnliche, rein optische Methode wird auch für Temperaturmessungen vorgestellt, welche auf der thermisch induzierten Verschiebung der Nullfeldaufspaltung und somit auch der anticrossings im angeregten Zustand (excited state, ES) basiert. Da die GSLACS keine Temperaturabhängigkeit zeigen, können die rein optischen Methoden zur Magnetfeld- und Temperaturmessung nacheinander am selben Defekt erfolgen. Um die erreichbare Sensitivität der Quantenmetrologie zu quantifizieren und auch um das Potential der Si-Vakanzen für Quantencomputing zu demonstrieren, werden die Kohärenzeigenschaften mit Hilfe der gepulsten ODMR Technik analysiert. So werden die Spin-Gitter Relaxationszeit T1 und die Spin-Spin Relaxationszeit T2 eingehend analysiert und deren Abhängigkeit von einem externen Magnetfeld und der Temperatur aufgestellt. Für tatsächliche Implementierung in einem Sensor, ist es entscheidend ein Optimum zwischen dem Signal-Rausch-Verhältnis und der Kohärenzlänge zu etablieren. Deswegen spielt die Kristallbestrahlung, durch die die Defekte erzeugt werden, eine wichtige Rolle für die Leistungsfähigkeit des Endgerätes. In der vorliegenden Arbeit werden unterschiedlich bestrahlte Proben, nämlich einmal mit Elektronen und einmal mit Neutronen unterschiedlicher Energie und mit unterschiedlichen Bestrahlungsdosen, analysiert. Anschließend wird eine Methode zur substantiellen Verlängerung der T2 Kohärenzzeit durch das locking der Spinpolarisation mit der Carr-Purcell-Meiboom-Gill (CPMG) Pulssequenz durchgeführt. KW - Siliciumcarbid KW - ODMR-Spektroskopie KW - Gitterbaufehler KW - silicon vacancy KW - pulsed ODMR KW - quantum metrology KW - quantum sensing KW - Siliciumvakanz KW - Silicium Fehlstelle KW - Quantensensorik KW - Feldstärkemessung Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-156199 ER - TY - JOUR A1 - Silva-Vilches, Cinthia A1 - Pletinckx, Katrien A1 - Lohnert, Miriam A1 - Pavlovic, Vladimir A1 - Ashour, Diyaaeldin A1 - John, Vini A1 - Vendelova, Emilia A1 - Kneitz, Susanne A1 - Zhou, Jie A1 - Chen, Rena A1 - Reinheckel, Thomas A1 - Mueller, Thomas D. A1 - Bodem, Jochen A1 - Lutz, Manfred B. T1 - Low doses of cholera toxin and its mediator cAMP induce CTLA-2 secretion by dendritic cells to enhance regulatory T cell conversion JF - PLoS ONE N2 - Immature or semi-mature dendritic cells (DCs) represent tolerogenic maturation stages that can convert naive T cells into Foxp3\(^{+}\) induced regulatory T cells (iTreg). Here we found that murine bone marrow-derived DCs (BM-DCs) treated with cholera toxin (CT) matured by up-regulating MHC-II and costimulatory molecules using either high or low doses of CT (CT\(^{hi}\), CT\(^{lo}\)) or with cAMP, a known mediator CT signals. However, all three conditions also induced mRNA of both isoforms of the tolerogenic molecule cytotoxic T lymphocyte antigen 2 (CTLA-2α and CTLA-2β). Only DCs matured under CT\(^{hi}\) conditions secreted IL-1β, IL-6 and IL-23 leading to the instruction of Th17 cell polarization. In contrast, CT\(^{lo}\)- or cAMP-DCs resembled semi-mature DCs and enhanced TGF-β-dependent Foxp3\(^{+}\) iTreg conversion. iTreg conversion could be reduced using siRNA blocking of CTLA-2 and reversely, addition of recombinant CTLA-2α increased iTreg conversion in vitro. Injection of CT\(^{lo}\)- or cAMP-DCs exerted MOG peptide-specific protective effects in experimental autoimmune encephalomyelitis (EAE) by inducing Foxp3\(^{+}\) Tregs and reducing Th17 responses. Together, we identified CTLA-2 production by DCs as a novel tolerogenic mediator of TGF-β-mediated iTreg induction in vitro and in vivo. The CT-induced and cAMP-mediated up-regulation of CTLA-2 also may point to a novel immune evasion mechanism of Vibrio cholerae. KW - small interfering RNAs KW - toxins KW - regulatory T cells KW - T cells KW - cytokines KW - cholera KW - cell differentiation KW - immune evasion Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-158244 VL - 12 IS - 7 ER - TY - JOUR A1 - Shityakov, Sergey A1 - Roewer, Norbert A1 - Förster, Carola A1 - Broscheit, Jens-Albert T1 - In silico modeling of indigo and Tyrian purple single-electron nano-transistors using density functional theory approach JF - Nanoscale Research Letters N2 - The purpose of this study was to develop and implement an in silico model of indigoid-based single-electron transistor (SET) nanodevices, which consist of indigoid molecules from natural dye weakly coupled to gold electrodes that function in a Coulomb blockade regime. The electronic properties of the indigoid molecules were investigated using the optimized density-functional theory (DFT) with a continuum model. Higher electron transport characteristics were determined for Tyrian purple, consistent with experimentally derived data. Overall, these results can be used to correctly predict and emphasize the electron transport functions of organic SETs, demonstrating their potential for sustainable nanoelectronics comprising the biodegradable and biocompatible materials. KW - density functional theory KW - indigo KW - Tyrian purple KW - single-electron transistor Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-158332 VL - 12 IS - 439 ER - TY - JOUR A1 - Shiban, Youssef A1 - Diemer, Julia A1 - Müller, Jana A1 - Brütting-Schick, Johanna A1 - Pauli, Paul A1 - Mühlberger, Andreas T1 - Diaphragmatic breathing during virtual reality exposure therapy for aviophobia: functional coping strategy or avoidance behavior? A pilot study JF - BMC Psychiatry N2 - Background: Although there is solid evidence for the efficacy of in vivo and virtual reality (VR) exposure therapy for a specific phobia, there is a significant debate over whether techniques promoting distraction or relaxation have impairing or enhancing effects on treatment outcome. In the present pilot study, we investigated the effect of diaphragmatic breathing (DB) as a relaxation technique during VR exposure treatment. Method: Twenty-nine patients with aviophobia were randomly assigned to VR exposure treatment either with or without diaphragmatic breathing (six cycles per minute). Subjective fear ratings, heart rate and skin conductance were assessed as indicators of fear during both the exposure and the test session one week later. Results: The group that experienced VR exposure combined with diaphragmatic breathing showed a higher tendency to effectively overcome the fear of flying. Psychophysiological measures of fear decreased and self-efficacy increased in both groups with no significant difference between the groups. Conclusions: Our findings indicate that diaphragmatic breathing during VR exposure does not interfere with the treatment outcome and may even enhance treatment effects of VR exposure therapy for aviophobic patients. KW - Virtual reality KW - Exposure therapy KW - Diaphragmatic breathing KW - Aviophobia KW - Experimental study Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-181007 VL - 17 ER - TY - JOUR A1 - Sharan, Malvika A1 - Förstner, Konrad U. A1 - Eulalio, Ana A1 - Vogel, Jörg T1 - APRICOT: an integrated computational pipeline for the sequence-based identification and characterization of RNA-binding proteins JF - Nucleic Acids Research N2 - RNA-binding proteins (RBPs) have been established as core components of several post-transcriptional gene regulation mechanisms. Experimental techniques such as cross-linking and co-immunoprecipitation have enabled the identification of RBPs, RNA-binding domains (RBDs) and their regulatory roles in the eukaryotic species such as human and yeast in large-scale. In contrast, our knowledge of the number and potential diversity of RBPs in bacteria is poorer due to the technical challenges associated with the existing global screening approaches. We introduce APRICOT, a computational pipeline for the sequence-based identification and characterization of proteins using RBDs known from experimental studies. The pipeline identifies functional motifs in protein sequences using position-specific scoring matrices and Hidden Markov Models of the functional domains and statistically scores them based on a series of sequence-based features. Subsequently, APRICOT identifies putative RBPs and characterizes them by several biological properties. Here we demonstrate the application and adaptability of the pipeline on large-scale protein sets, including the bacterial proteome of Escherichia coli. APRICOT showed better performance on various datasets compared to other existing tools for the sequence-based prediction of RBPs by achieving an average sensitivity and specificity of 0.90 and 0.91 respectively. The command-line tool and its documentation are available at https://pypi.python.org/pypi/bio-apricot. KW - RNA-binding proteins KW - identification KW - characterization Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-157963 VL - 45 IS - 11 ER - TY - THES A1 - Sharan, Malvika T1 - Bio-computational identification and characterization of RNA-binding proteins in bacteria T1 - Bioinformatische Identifikation und Charakterisierung von RNA-bindenden Proteinen in Bakterien N2 - RNA-binding proteins (RBPs) have been extensively studied in eukaryotes, where they post-transcriptionally regulate many cellular events including RNA transport, translation, and stability. Experimental techniques, such as cross-linking and co-purification followed by either mass spectrometry or RNA sequencing has enabled the identification and characterization of RBPs, their conserved RNA-binding domains (RBDs), and the regulatory roles of these proteins on a genome-wide scale. These developments in quantitative, high-resolution, and high-throughput screening techniques have greatly expanded our understanding of RBPs in human and yeast cells. In contrast, our knowledge of number and potential diversity of RBPs in bacteria is comparatively poor, in part due to the technical challenges associated with existing global screening approaches developed in eukaryotes. Genome- and proteome-wide screening approaches performed in silico may circumvent these technical issues to obtain a broad picture of the RNA interactome of bacteria and identify strong RBP candidates for more detailed experimental study. Here, I report APRICOT (“Analyzing Protein RNA Interaction by Combined Output Technique”), a computational pipeline for the sequence-based identification and characterization of candidate RNA-binding proteins encoded in the genomes of all domains of life using RBDs known from experimental studies. The pipeline identifies functional motifs in protein sequences of an input proteome using position-specific scoring matrices and hidden Markov models of all conserved domains available in the databases and then statistically score them based on a series of sequence-based features. Subsequently, APRICOT identifies putative RBPs and characterizes them according to functionally relevant structural properties. APRICOT performed better than other existing tools for the sequence-based prediction on the known RBP data sets. The applications and adaptability of the software was demonstrated on several large bacterial RBP data sets including the complete proteome of Salmonella Typhimurium strain SL1344. APRICOT reported 1068 Salmonella proteins as RBP candidates, which were subsequently categorized using the RBDs that have been reported in both eukaryotic and bacterial proteins. A set of 131 strong RBP candidates was selected for experimental confirmation and characterization of RNA-binding activity using RNA co-immunoprecipitation followed by high-throughput sequencing (RIP-Seq) experiments. Based on the relative abundance of transcripts across the RIP-Seq libraries, a catalogue of enriched genes was established for each candidate, which shows the RNA-binding potential of 90% of these proteins. Furthermore, the direct targets of few of these putative RBPs were validated by means of cross-linking and co-immunoprecipitation (CLIP) experiments. This thesis presents the computational pipeline APRICOT for the global screening of protein primary sequences for potential RBPs in bacteria using RBD information from all kingdoms of life. Furthermore, it provides the first bio-computational resource of putative RBPs in Salmonella, which could now be further studied for their biological and regulatory roles. The command line tool and its documentation are available at https://malvikasharan.github.io/APRICOT/. N2 - RNA-bindende Proteine (RBPs) wurden umfangreich in Eukaryoten erforscht, in denen sie viele Prozesse wie RNA-Transport, -Translation und -Stabilität post-transkriptionell regulieren. Experimentelle Methoden wie Cross-linking and Koimmunpräzipitation mit nachfolgedener Massenspektromentrie / RNA-Sequenzierung ermöglichten eine weitreichende Charakterisierung von RBPs, RNA-bindenden Domänen (RBDs) und deren regulatorischen Rollen in eukaryotischen Spezies wie Mensch und Hefe. Weitere Entwicklungen im Bereich der hochdurchsatzbasierten Screeningverfahren konnten das Verständnis von RBPs in Eukaryoten enorm erweitern. Im Gegensatz dazu ist das Wissen über die Anzahl und die potenzielle Vielfalt von RBPs in Bakterien dürftig. In der vorliegenden Arbeit präsentiere ich APRICOT, eine bioinformatische Pipeline zur sequenzbasierten Identifikation und Charakterisierung von Proteinen aller Domänen des Lebens, die auf RBD-Informationen aus experimentellen Studien aufbaut. Die Pipeline nutzt Position Specific Scoring Matrices und Hidden-MarkovModelle konservierter Domänen, um funktionelle Motive in Proteinsequenzen zu identifizieren und diese anhand von sequenzbasierter Eigenschaften statistisch zu bewerten. Anschließend identifiziert APRICOT mögliche RBPs und charakterisiert auf Basis ihrer biologischeren Eigenschaften. In Vergleichen mit ähnlichen Werkzeugen übertraf APRICOT andere Programme zur sequenzbasierten Vorhersage von RBPs. Die Anwendungsöglichkeiten und die Flexibilität der Software wird am Beispiel einiger großer RBP-Kollektionen, die auch das komplette Proteom von Salmonella Typhimurium SL1344 beinhalten, dargelegt. APRICOT identifiziert 1068 Proteine von Salmonella als RBP-Kandidaten, die anschließend unter Nutzung der bereits bekannten bakteriellen und eukaryotischen RBDs klassifiziert wurden. 131 der RBP-Kandidaten wurden zur Charakterisierung durch RNA co-immunoprecipitation followed by high-throughput sequencing (RIP-seq) ausgewählt. Basierend auf der relativen Menge an Transkripten in den RIP-seq-Bibliotheken wurde ein Katalog von angereicherten Genen erstellt, der auf eine potentielle RNA-bindende Funktion in 90% dieser Proteine hindeutet. Weiterhin wurden die Bindungstellen einiger dieser möglichen RBPs mit Cross-linking and Co-immunoprecipitation (CLIP) bestimmt. Diese Doktorarbeit beschreibt die bioinformatische Pipeline APRICOT, die ein globales Screening von RBPs in Bakterien anhand von Informationen bekannter RBDs ermöglicht. Zudem enthält sie eine Zusammenstellung aller potentieller RPS in Salmonella, die nun auf ihre biologsche Funktion hin untersucht werden können. Das Kommondozeilen-Programm und seine Dokumentation sind auf https://malvikasharan.github.io/APRICOT/ verfügbar. KW - Bioinformatics Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-153573 ER - TY - THES A1 - Shane, Nadine T1 - The Country-of-Origin Effect and its Potential Impact on How German Consumers Perceive Chinese Luxury Goods N2 - This thesis investigates the impact of the country-of-origin effect on Chinese luxury brands which intend to enter the German luxury goods market. By means of a questionnaire and a quantitative analysis, possible threats to Chinese newcomers that derive from an unfavorable country image are illustrated. In fact, the Chinese origin of luxury goods has an impact on German consumers' perception. KW - country-of-origin effect KW - China KW - luxury market KW - consumerism KW - German consumers Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-153047 ER - TY - JOUR A1 - Shamim, Saquib A1 - Mahapatra, S. A1 - Scappucci, G. A1 - Klesse, W. M. A1 - Simmons, M. Y. A1 - Ghosh, Arindam T1 - Dephasing rates for weak localization and universal conductance fluctuations in two dimensional Si: P and Ge: P δ-layers JF - Scientific Reports N2 - We report quantum transport measurements on two dimensional (2D) Si:P and Ge:P δ-layers and compare the inelastic scattering rates relevant for weak localization (WL) and universal conductance fluctuations (UCF) for devices of various doping densities (0.3–2.5 × 10\(^{18}\)m\(^{−2}\)) at low temperatures (0.3–4.2 K). The phase breaking rate extracted experimentally from measurements of WL correction to conductivity and UCF agree well with each other within the entire temperature range. This establishes that WL and UCF, being the outcome of quantum interference phenomena, are governed by the same dephasing rate. KW - two-dimensional materials KW - quantum information KW - electronic properties and materials Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-170934 VL - 7 IS - 46670 ER - TY - JOUR A1 - Shady, Nourhan Hisham A1 - El-Hossary, Ebaa M. A1 - Fouad, Mostafa A. A1 - Gulder, Tobias A. M. A1 - Kamel, Mohamed Salah A1 - Abdelmohsen, Usama Ramadan T1 - Bioactive natural products of marine sponges from the Genus Hyrtios JF - Molecules N2 - Marine sponges are known as a rich source for novel bioactive compounds with valuable pharmacological potential. One of the most predominant sponge genera is Hyrtios, reported to have various species such as Hyrtios erectus, Hyrtios reticulatus, Hyrtios gumminae, Hyrtios communis, and Hyrtios tubulatus and a number of undescribed species. Members of the genus Hyrtios are a rich source of natural products with diverse and valuable biological activities, represented by different chemical classes including alkaloids, sesterterpenes and sesquiterpenes. This review covers the literature until June 2016, providing a complete survey of all compounds isolated from the genus Hyrtios with their corresponding biological activities whenever applicable. KW - alkaloids KW - bioactive KW - marine natural products KW - marine sponges KW - Hyrtios Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-158227 VL - 22 IS - 5 ER - TY - THES A1 - Seufert, Michael Thomas T1 - Quality of Experience and Access Network Traffic Management of HTTP Adaptive Video Streaming T1 - Quality of Experience und Verkehrsmanagement in Zugangsnetzwerken für adaptives HTTP Videostreaming N2 - The thesis focuses on Quality of Experience (QoE) of HTTP adaptive video streaming (HAS) and traffic management in access networks to improve the QoE of HAS. First, the QoE impact of adaptation parameters and time on layer was investigated with subjective crowdsourcing studies. The results were used to compute a QoE-optimal adaptation strategy for given video and network conditions. This allows video service providers to develop and benchmark improved adaptation logics for HAS. Furthermore, the thesis investigated concepts to monitor video QoE on application and network layer, which can be used by network providers in the QoE-aware traffic management cycle. Moreover, an analytic and simulative performance evaluation of QoE-aware traffic management on a bottleneck link was conducted. Finally, the thesis investigated socially-aware traffic management for HAS via Wi-Fi offloading of mobile HAS flows. A model for the distribution of public Wi-Fi hotspots and a platform for socially-aware traffic management on private home routers was presented. A simulative performance evaluation investigated the impact of Wi-Fi offloading on the QoE and energy consumption of mobile HAS. N2 - Die Doktorarbeit beschäftigt sich mit Quality of Experience (QoE) – der subjektiv empfundenen Dienstgüte – von adaptivem HTTP Videostreaming (HAS) und mit Verkehrsmanagement, das in Zugangsnetzwerken eingesetzt werden kann, um die QoE des adaptiven Videostreamings zu verbessern. Zuerst wurde der Einfluss von Adaptionsparameters und der Zeit pro Qualitätsstufe auf die QoE von adaptivem Videostreaming mittels subjektiver Crowdsourcingstudien untersucht. Die Ergebnisse wurden benutzt, um die QoE-optimale Adaptionsstrategie für gegebene Videos und Netzwerkbedingungen zu berechnen. Dies ermöglicht Dienstanbietern von Videostreaming verbesserte Adaptionsstrategien für adaptives Videostreaming zu entwerfen und zu benchmarken. Weiterhin untersuchte die Arbeit Konzepte zum Überwachen von QoE von Videostreaming in der Applikation und im Netzwerk, die von Netzwerkbetreibern im Kreislauf des QoE-bewussten Verkehrsmanagements eingesetzt werden können. Außerdem wurde eine analytische und simulative Leistungsbewertung von QoE-bewusstem Verkehrsmanagement auf einer Engpassverbindung durchgeführt. Schließlich untersuchte diese Arbeit sozialbewusstes Verkehrsmanagement für adaptives Videostreaming mittels WLAN Offloading, also dem Auslagern von mobilen Videoflüssen über WLAN Netzwerke. Es wurde ein Modell für die Verteilung von öffentlichen WLAN Zugangspunkte und eine Plattform für sozialbewusstes Verkehrsmanagement auf privaten, häuslichen WLAN Routern vorgestellt. Abschließend untersuchte eine simulative Leistungsbewertung den Einfluss von WLAN Offloading auf die QoE und den Energieverbrauch von mobilem adaptivem Videostreaming. T3 - Würzburger Beiträge zur Leistungsbewertung Verteilter Systeme - 03/17 KW - Quality of Experience KW - Zugangsnetz KW - Videoübertragung KW - Adaptives System KW - Verkehrsregelung KW - Quality of Experience KW - Verkehrsmanagement KW - Adaptives Videostreaming KW - Quality of Experience KW - Traffic Management KW - Adaptive Video Streaming KW - Verkehrsleitsystem Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-154131 SN - 1432-8801 ER -