TY - JOUR A1 - Hofmann, Sigrun Ruth A1 - Böttger, Fanny A1 - Range, Ursula A1 - Lück, Christian A1 - Morbach, Henner A1 - Girschick, Hermann Joseph A1 - Suttorp, Meinolf A1 - Hedrich, Christian Michael T1 - Serum interleukin-6 and CCL11/eotaxin may be suitable biomarkers for the diagnosis of chronic nonbacterial osteomyelitis JF - Frontiers in Pediatrics N2 - Objectives: Chronic recurrent multifocal osteomyelitis (CRMO), the most severe form of chronic nonbacterial osteomyelitis (CNO), is an autoinflammatory bone disorder. In the absence of diagnostic criteria or biomarkers, CNO/CRMO remains a diagnosis of exclusion. The aim of this study was to identify biomarkers for diagnosing multifocal disease (CRMO). Study design: Sera from 71 pediatric CRMO patients, 11 patients with osteoarticular infections, 62 patients with juvenile idiopathic arthritis (JIA), 7 patients with para-infectious or reactive arthritis, and 43 patients with acute leukemia or lymphoma, as well as 59 healthy individuals were collected. Multiplex analysis of 18 inflammation- and/or bone remodeling-associated serum proteins was performed. Statistical analysis included univariate ANOVA, discriminant analysis, univariate receiver operating characteristic (ROC) analysis, and logistic regression analyses. Results: For 14 of 18 blood serum proteins, significant differences were determined between CRMO patients, at least one alternative diagnosis, or healthy controls. Multi-component discriminant analysis delivered five biomarkers (IL-6, CCL11/eotaxin, CCL5/RANTES, collagen Iα, sIL-2R) for the diagnosis of CRMO. ROC analysis allowed further reduction to a core set of 2 biomarkers (CCL11/eotaxin, IL-6) that are sufficient to discern between CRMO, healthy controls, and alternative diagnoses. Conclusion: Serum biomarkers CCL11/eotaxin and IL-6 differentiate between patients with CRMO, healthy controls, and alternative diagnoses (leukemia and lymphoma, osteoarticular infections, para-infectious arthritis, and JIA). Easily accessible biomarkers may aid in diagnosing CRMO. Further studies testing biomarkers in larger unrelated cohorts are warranted. KW - medicine KW - chronic nonbacterial osteomyelitis KW - chronic recurrent multifocal osteomyelitis KW - inflammation KW - biomarker KW - autoinflammation KW - diagnosis Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-172744 VL - 5 ER - TY - JOUR A1 - Hofmann, Lukas A1 - Karl, Franziska A1 - Sommer, Claudia A1 - Üçeyler, Nurcan T1 - Affective and cognitive behavior in the alpha-galactosidase A deficient mouse model of Fabry disease JF - PLoS ONE N2 - Fabry disease is an X-linked inherited lysosomal storage disorder with intracellular accumulation of globotriaosylceramide (Gb3) due to α-galactosidase A (α-Gal A) deficiency. Fabry patients frequently report of anxiety, depression, and impaired cognitive function. We characterized affective and cognitive phenotype of male mice with α-Gal A deficiency (Fabry KO) and compared results with those of age-matched male wildtype (WT) littermates. Young (3 months) and old (≥ 18 months) mice were tested in the naïve state and after i.pl. injection of complete Freund`s adjuvant (CFA) as an inflammatory pain model. We used the elevated plus maze (EPM), the light-dark box (LDB) and the open field test (OF) to investigate anxiety-like behavior. The forced swim test (FST) and Morris water maze (MWM) were applied to assess depressive-like and learning behavior. The EPM test revealed no intergroup difference for anxiety-like behavior in naïve young and old Fabry KO mice compared to WT littermates, except for longer time spent in open arms of the EPM for young WT mice compared to young Fabry KO mice (p<0.05). After CFA injection, young Fabry KO mice showed increased anxiety-like behavior compared to young WT littermates (p<0.05) and naïve young Fabry KO mice (p<0.05) in the EPM as reflected by shorter time spent in EPM open arms. There were no relevant differences in the LDB and the OF test, except for longer time spent in the center zone of the OF by young WT mice compared to young Fabry KO mice (p<0.05). Complementary to this, depression-like and learning behavior were not different between genotypes and age-groups, except for the expectedly lower memory performance in older age-groups compared to young mice. Our results indicate that genetic influences on affective and cognitive symptoms in FD may be of subordinate relevance, drawing attention to potential influences of environmental and epigenetic factors. KW - cognitive impairment KW - mouse models KW - depression KW - swimming KW - learning KW - Fabry disease KW - genetics Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-170745 VL - 12 IS - 6 ER - TY - THES A1 - Hoffmann, Helene T1 - Identifying regulators of tumor vascular morphology T1 - Identifizierung von Regulatoren der Tumorgefäßmorphologie N2 - In contrast to normal vessels, tumor vasculature is structurally and functionally abnormal. Tumor vessels are highly disorganized, tortuous and dilated, with uneven diameter and excessive branching. Consequently, tumor blood flow is chaotic, which leads to hypoxic and acidic regions in tumors. These conditions lower the therapeutic effectiveness and select for cancer cells that are more malignant and metastatic. The therapeutic outcome could be improved by increasing the functionality and density of the tumor vasculature. Tumor angiogenesis also shows parallels to epithelial to mesenchymal transition (EMT), a process enabling metastasis. Metastasis is a multi-step process, during which tumor cells have to invade the surrounding host tissue to reach the circulation and to be transported to distant sites. We hypothesize that the variability in the phenotype of the tumor vasculature is controlled by the differential expression of key transcription factors. Inhibiting these transcription factors might be a promising way for angiogenic intervention and vascular re-engineering. Therefore, we investigated the interdependence of tumor-, stroma- and immune cell-derived angiogenic factors, transcription factors and resulting vessel phenotypes. Additionally, we evaluated whether transcription factors that regulate EMT are promising targets for vascular remodeling. We used formalin fixed paraffin embedded samples from breast cancer patients, classified according to estrogen-, progesterone- and human epidermal growth factor receptor (HER) 2 status. Establishing various techniques (CD34 staining, laser microdissection, RNA isolation and expression profiling) we systematically analyzed tumor and stroma-derived growths factors. In addition, vascular parameters such as microvessel size, area, circularity and density were assessed. Finally the established expression profiles were correlated with the observed vessel phenotype. As the SNAI1 transcriptional repressor is a key regulator of EMT, we examined the effect of vascular knockdown of Snai1 in murine cancer models (E0771, B16-F10 and lewis lung carcinoma). Among individual mammary carcinomas, but not among subtypes, strong differences of vascular parameters were observed. Also, little difference between lobular carcinomas and ductal carcinomas was found. Vessel phenotype of Her2 enriched carcinomas was similar to that of lobular carcinomas. Vessel morphology of luminal A and B and basal-like tumors resembled each other. Expression of angiogenic factors was variable across subtypes. We discovered an inverse correlation of PDGF-B and VEGF-A with vessel area in luminal A tumors. In these tumors expression of IL12A, an inhibitor of angiogenesis, was also correlated with vessel size. Treatment of endothelial cells with growth factors revealed an increased expression of transcription factors involved in the regulation of EMT. Knockdown of Snai1 in endothelial cells of mice increased tumor growth and decreased hypoxia in the E0771 and the B16-F10 models. In the lewis lung carcinomas, tumor vascularity and biodistribution of doxorubicin were improved. Here, doxorubicin treatment in combination with the endothelial cell-specific knockdown did slow tumor growth. This shows that SNAI1 is important for a tumor's vascularization, with the significance of its role depending on the tumor model. The methods established in this work open the way for the analysis of the expression of key transcription factors in vessels of formalin fixed paraffin embedded tumors. This research enables us to find novel targets for vascular intervention and to eventually design novel targeted drugs to inhibit these targets. N2 - In Tumoren, im Vergleich zu gesundem Gewebe, sind Aufbau und Funktionsweise von Blutgefäßen abnormal. Tumorgefäße sind unorgansiert, stark gewunden und geweitet, und weisen einen ungleichmäßigen Durchmesser sowie häufige Verzweigungen auf. Die chaotische Durchblutung führt zu hypoxischen und sauren Regionen. Diese abnormale Gefäßstruktur verringert sowohl die Einbringung, als auch die Wirksamkeit von Medikamenten und fördert zudem Invasivität und Metastasierung. Die Tumorbehandlung könnte durch eine "Normalisierung" der Gefäße sowie durch die Verbesserung der Dichte der Tumorblutgefäße erleichtert werden, da Medikamente so leichter das Tumorzentrum erreichen. In Tumoren weist der Prozess der Angiogenese Parallelen zur epithelial-mesenchymalen Transition (EMT) auf. Die EMT spielt eine zentrale Rolle bei der Metastasierung. Hierbei handelt es sich um einen mehrstufigen Prozess, bei dem Tumorzellen in das umgebende Wirtsgewebe eindringen um den Blutkreislauf zu erreichen und so zu weiter entfernten Organen zu gelangen. Laut unserer Hypothese werden die unterschiedlichen Phenotypen der Tumorblutgefäße durch die Expression verschiedener Schlüssel-Transkriptionsfaktoren kontrolliert. Die Hemmung dieser Transkriptionsfaktoren wäre folglich eine vielversprechende Möglichkeit in die Gefäßsturktur einzugreifen und sie zu restrukturieren. Deshalb wurde die Wechselwirkungen zwischen angiogenen Faktoren, die von Tumorzellen, Stromazellen und Zellen des Immunsystems abgesondert werden und Transkriptionsfaktoren sowie den resultierenden Gefäßphenotypen untersucht. Zudem wurde evaluiert, ob Transkriptionsfaktoren, die bei der EMT von Bedeutung sind, ein therapeutisches Ziel zur Umorganisation der Gefäßstruktur darstellen könnten. Für diese Studie wurden humane, in Formalin fixierte und in Paraffin eingebette, Proben von Brustkrebspatienten verwendet. Diese Proben wurden anhand des Rezeptorstatus von Östrogen-, Progesteron- und humanem epidermalen Wachstumsfaktor-Rezeptor (HER) 2 in tumorbiologische Untergruppen eingeordnet. Die Etablierung verschiedener Techniken (CD34 Gewebefärbung, Laser-Mikrodissektion, RNA-Isolierung und Erstellung von Expressionsprofilen) ermöglichte es, systematisch Wachstumsfaktoren, die von den Tumoren und ihrem umgebenden Stroma sezerniert werden, zu analysieren. Zusätzlich untersuchten wir vaskuläre Parameter wie Gefäßgröße, -fläche, -dichte und -zirkularität. Schließlich wurden die erstellten Expressionsprofile mit den Gefäßeigenschaften korreliert. In verschiedenen murinen Krebsmodellen (E0771, B16-F10 und Lewis-Lungenkarzinom) untersuchten wir die Auswirkung der Herrunterregulierung des Transkriptionsfaktors SNAI1 in Blutgefäßen. SNAI1 spielt eine Schlüsselrolle bei der Regulierung der EMT. Es zeigte sich, dass die einzelnen Brustkrebsproben sich bezüglich der untersuchten Gefäßparameter stark voneinander unterschieden. Zwischen den Subtypen hingegen waren keine Unterschiede zu sehen. Lobuläre und duktale Karzinome unterschieden sich kaum voneinander. Der Gefäßphenotyp der HER2-positiven Proben ähnelte dem der lobulären. Des Weiteren ähnelten sich Karzinome vom Luminal A- und B-Typ so wie vom Basal-Zell-Typ in ihrer Gefäßmorphologie. Das Expressionsmuster der Wachstumsfaktoren variierte von Tumor zu Tumor und innerhalb der Subytpen. Es stellte sich heraus, dass die Expression von PDGF-B und VEGF-A im Subtyp Luminal A invers mit der Gefäßfläche korreliert ist. Außerdem war in dieser Gruppe die Expression des Angiogenese-Hemmers IL-12A direkt mit der Gefäßgröße korreliert. Die Behandlung von Endothelzellen mit Wachstumsfaktoren zeigte eine erhöhte Expression von Transkriptionsfaktoren, die an der Regulierung der EMT beteiligt sind. Die Herrunterregulierung von Snai1 in Endothelzellen im Tierversuch führte zu einer Zunahme des Tumorwachstums sowie zu einem Rückgang der Hypoxie in den Tumormodellen E0771 und B16-F10. In den Lewis-Lungenkarzinomen kam es zu einer Verbesserung der Blutgefäßmorphologie und der Verteilung von Doxorubicin im Tumorgewebe. Die Therapie mit Doxorubicin in Kombination mit der endothellzell-spezifischen Herrunterregulierung von Snai1 zeigte zudem eine stärkere Hemmung des Tumorwachstums. Die Methoden, die in dieser Arbeit etabliert wurden, ermöglichen die Analyse der Expression von Schlüssel-Transkriptionsfaktoren in den Gefäßen von Formalin fixierten und in Paraffin eingebetten Proben. Dies macht es wiederum möglich neue Angriffspunkte für die Gefäßmodulation zu finden und schlußendlich neue, darauf gerichtete Medikamente zu entwickeln. KW - Antiangiogenese KW - Angiogenese KW - Tumor KW - Transkriptionsfaktor KW - tumor angiogenesis KW - epithelial-mesenchymal transition KW - tumor vascular morphologie KW - Tumorangiogenese KW - Epithelial-mesenchymale Transition KW - Tumorgefäßmorphologie Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-142348 ER - TY - INPR A1 - Hoche, Joscha A1 - Schmitt, Hans-Christian A1 - Humeniuk, Alexander A1 - Fischer, Ingo A1 - Mitrić, Roland A1 - Röhr, Merle I. S. T1 - The mechanism of excimer formation: an experimental and theoretical study on the pyrene dimer T2 - Physical Chemistry Chemical Physics N2 - The understanding of excimer formation in organic materials is of fundamental importance, since excimers profoundly influence their functional performance in applications such as light-harvesting, photovoltaics or organic electronics. We present a joint experimental and theoretical study of the ultrafast dynamics of excimer formation in the pyrene dimer in a supersonic jet, which is the archetype of an excimer forming system. We perform simulations of the nonadiabatic photodynamics in the frame of TDDFT that reveal two distinct excimer formation pathways in the gas-phase dimer. The first pathway involves local excited state relaxation close to the initial Franck–Condon geometry that is characterized by a strong excitation of the stacking coordinate exhibiting damped oscillations with a period of 350 fs that persist for several picoseconds. The second excimer forming pathway involves large amplitude oscillations along the parallel shift coordinate with a period of ≈900 fs that after intramolecular vibrational energy redistribution leads to the formation of a perfectly stacked dimer. The electronic relaxation within the excitonic manifold is mediated by the presence of intermolecular conical intersections formed between fully delocalized excitonic states. Such conical intersections may generally arise in stacked π-conjugated aggregates due to the interplay between the long-range and short-range electronic coupling. The simulations are supported by picosecond photoionization experiments in a supersonic jet that provide a time-constant for the excimer formation of around 6–7 ps, in good agreement with theory. Finally, in order to explore how the crystal environment influences the excimer formation dynamics we perform large scale QM/MM nonadiabatic dynamics simulations on a pyrene crystal in the framework of the long-range corrected tight-binding TDDFT. In contrast to the isolated dimer, the excimer formation in the crystal follows a single reaction pathway in which the initially excited parallel slip motion is strongly damped by the interaction with the surrounding molecules leading to the slow excimer stabilization on a picosecond time scale. KW - exciton dynamics KW - pyrene dimer Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-159656 UR - http://dx.doi.org/10.1039/C7CP03990E N1 - Submitted version ER - TY - JOUR A1 - Hoche, Joscha A1 - Schmitt, Hans-Christian A1 - Humeniuk, Alexander A1 - Fischer, Ingo A1 - Mitrić, Roland A1 - Röhr, Merle I. S. T1 - The mechanism of excimer formation: an experimental and theoretical study on the pyrene dimer JF - Physical Chemistry Chemical Physics N2 - The understanding of excimer formation in organic materials is of fundamental importance, since excimers profoundly influence their functional performance in applications such as light-harvesting, photovoltaics or organic electronics. We present a joint experimental and theoretical study of the ultrafast dynamics of excimer formation in the pyrene dimer in a supersonic jet, which is the archetype of an excimer forming system. We perform simulations of the nonadiabatic photodynamics in the frame of TDDFT that reveal two distinct excimer formation pathways in the gas-phase dimer. The first pathway involves local excited state relaxation close to the initial Franck–Condon geometry that is characterized by a strong excitation of the stacking coordinate exhibiting damped oscillations with a period of 350 fs that persist for several picoseconds. The second excimer forming pathway involves large amplitude oscillations along the parallel shift coordinate with a period of ≈900 fs that after intramolecular vibrational energy redistribution leads to the formation of a perfectly stacked dimer. The electronic relaxation within the excitonic manifold is mediated by the presence of intermolecular conical intersections formed between fully delocalized excitonic states. Such conical intersections may generally arise in stacked π-conjugated aggregates due to the interplay between the long-range and short-range electronic coupling. The simulations are supported by picosecond photoionization experiments in a supersonic jet that provide a time-constant for the excimer formation of around 6–7 ps, in good agreement with theory. Finally, in order to explore how the crystal environment influences the excimer formation dynamics we perform large scale QM/MM nonadiabatic dynamics simulations on a pyrene crystal in the framework of the long-range corrected tight-binding TDDFT. In contrast to the isolated dimer, the excimer formation in the crystal follows a single reaction pathway in which the initially excited parallel slip motion is strongly damped by the interaction with the surrounding molecules leading to the slow excimer stabilization on a picosecond time scale. KW - exciton dynamics KW - pyrene dimer Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-159514 UR - http://dx.doi.org/10.1039/C7CP03990E N1 - Accepted version VL - 19 IS - 36 ER - TY - JOUR A1 - Hillmann, Steffi A1 - Wiedmann, Silke A1 - Rücker, Viktoria A1 - Berger, Klaus A1 - Nabavi, Darius A1 - Bruder, Ingo A1 - Koennecke, Hans-Christian A1 - Seidel, Günter A1 - Misselwitz, Björn A1 - Janssen, Alfred A1 - Burmeister, Christoph A1 - Matthis, Christine A1 - Busse, Otto A1 - Hermanek, Peter A1 - Heuschmann, Peter Ulrich T1 - Stroke unit care in Germany: the German stroke registers study group (ADSR) JF - BMC Neurology N2 - Background: Factors influencing access to stroke unit (SU) care and data on quality of SU care in Germany are scarce. We investigated characteristics of patients directly admitted to a SU as well as patient-related and structural factors influencing adherence to predefined indicators of quality of acute stroke care across hospitals providing SU care. Methods: Data were derived from the German Stroke Registers Study Group (ADSR), a voluntary network of 9 regional registers for monitoring quality of acute stroke care in Germany. Multivariable logistic regression analyses were performed to investigate characteristics influencing direct admission to SU. Generalized Linear Mixed Models (GLMM) were used to estimate the influence of structural hospital characteristics (percentage of patients admitted to SU, year of SU-certification, and number of stroke and TIA patients treated per year) on adherence to predefined quality indicators. Results: In 2012 180,887 patients were treated in 255 hospitals providing certified SU care participating within the ADSR were included in the analysis; of those 82.4% were directly admitted to a SU. Ischemic stroke patients without disturbances of consciousness (p < .0001), an interval onset to admission time ≤3 h (p < .0001), and weekend admission (p < .0001) were more likely to be directly admitted to a SU. A higher proportion of quality indicators within predefined target ranges were achieved in hospitals with a higher proportion of SU admission (p = 0.0002). Quality of stroke care could be maintained even if certification was several years ago. Conclusions: Differences in demographical and clinical characteristics regarding the probability of SU admission were observed. The influence of structural characteristics on adherence to evidence-based quality indicators was low. KW - stroke register KW - stroke unit care KW - quality of health care KW - quality indicators Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-159447 VL - 17 IS - 49 ER - TY - JOUR A1 - Hibar, Derrek P. A1 - Adams, Hieab H.H. A1 - Jahanshad, Neda A1 - Chauhan, Ganesh A1 - Stein, Jason L A1 - Hofer, Edith A1 - Renteria, Miguel E. A1 - Bis, Joshua C. A1 - Arias-Vasquez, Alejandro A1 - Ikram, M. Kamran A1 - Desrivières, Sylvane A1 - Vernooij, Meike W. A1 - Abramovic, Lucija A1 - Alhusaini, Saud A1 - Amin, Najaf A1 - Andersson, Micael A1 - Arfanakis, Konstantinos A1 - Aribisala, Benjamin S. A1 - Armstrong, Nicola J. A1 - Athanasiu, Lavinia A1 - Axelsson, Tomas A1 - Beecham, Ashley H. A1 - Beiser, Alexa A1 - Bernard, Manon A1 - Blanton, Susan H. A1 - Bohlken, Marc M. A1 - Boks, Marco P. A1 - Bralten, Janita A1 - Brickman, Adam M. A1 - Carmichael, Owen T1 - Novel genetic loci associated with hippocampal volume JF - Nature Communications N2 - The hippocampal formation is a brain structure integrally involved in episodic memory, spatial navigation, cognition and stress responsiveness. Structural abnormalities in hippocampal volume and shape are found in several common neuropsychiatric disorders. To identify the genetic underpinnings of hippocampal structure here we perform a genome-wide association study (GWAS) of 33,536 individuals and discover six independent loci significantly associated with hippocampal volume, four of them novel. Of the novel loci, three lie within genes (ASTN2, DPP4 and MAST4) and one is found 200 kb upstream of SHH. A hippocampal subfield analysis shows that a locus within the MSRB3 gene shows evidence of a localized effect along the dentate gyrus, subiculum, CA1 and fissure. Further, we show that genetic variants associated with decreased hippocampal volume are also associated with increased risk for Alzheimer’s disease (r\(_g\)=−0.155). Our findings suggest novel biological pathways through which human genetic variation influences hippocampal volume and risk for neuropsychiatric illness. KW - brain KW - hippocampal formation KW - neuropsychiatric disorders KW - Alzheimer’s disease KW - genetic loci KW - hippocampal volume Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-182115 VL - 8 ER - TY - JOUR A1 - Heuser, Christoph A1 - Gotot, Janine A1 - Piotrowski, Eveline Christina A1 - Philipp, Marie-Sophie A1 - Courrèges, Christina Johanna Felicia A1 - Otte, Martin Sylvester A1 - Guo, Linlin A1 - Schmid-Burgk, Jonathan Leo A1 - Hornung, Veit A1 - Heine, Annkristin A1 - Knolle, Percy Alexander A1 - Garbi, Natalio A1 - Serfling, Edgar A1 - Evaristo, César A1 - Thaiss, Friedrich A1 - Kurts, Christian T1 - Prolonged IKK\(\beta\) Inhibition Improves Ongoing CTL Antitumor Responses by Incapacitating Regulatory T Cells JF - Cell Reports N2 - Regulatory T cells (Tregs) prevent autoimmunity but limit antitumor immunity. The canonical NF-\(\kappa\)B signaling pathway both activates immunity and promotes thymic Treg development. Here, we report that mature Tregs continue to require NF-\(\kappa\)B signaling through I\(\kappa\)B-kinase \(\beta\) (IKK\(\beta\)) after thymic egress. Mice lacking IKK\(\beta\) in mature Tregs developed scurfy-like immunopathology due to death of peripheral FoxP3\(^+\) Tregs. Also, pharmacological IKK\(\beta\) inhibition reduced Treg numbers in the circulation by ~50% and downregulated FoxP3 and CD25 expression and STAT5 phosphorylation. In contrast, activated cytotoxic T lymphocytes (CTLs) were resistant to IKK\(\beta\) inhibition because other pathways, in particular nuclear factor of activated T cells (NFATc1) signaling, sustained their survival and expansion. In a melanoma mouse model, IKK\(\beta\) inhibition after CTL cross-priming improved the antitumor response and delayed tumor growth. In conclusion, prolonged IKK\(\beta\) inhibition decimates circulating Tregs and improves CTL responses when commenced after tumor vaccination, indicating that IKK\(\beta\) represents a druggable checkpoint. KW - medicine KW - regulatory T cells KW - NF-\(\kappa\)B pathway KW - tumor vaccination KW - checkpoint inhibition KW - cytotoxic T cells KW - cross-priming KW - apoptosis KW - tumor immunology KW - melanoma Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-173643 VL - 21 IS - 3 ER - TY - JOUR A1 - Herold, Volker A1 - Herz, Stefan A1 - Winter, Patrick A1 - Gutjahr, Fabian Tobias A1 - Andelovic, Kristina A1 - Bauer, Wolfgang Rudolf A1 - Jakob, Peter Michael T1 - Assessment of local pulse wave velocity distribution in mice using k-t BLAST PC-CMR with semi-automatic area segmentation. JF - Journal of Cardiovascular Magnetic Resonance N2 - Background: Local aortic pulse wave velocity (PWV) is a measure for vascular stiffness and has a predictive value for cardiovascular events. Ultra high field CMR scanners allow the quantification of local PWV in mice, however these systems are yet unable to monitor the distribution of local elasticities. Methods: In the present study we provide a new accelerated method to quantify local aortic PWV in mice with phase-contrast cardiovascular magnetic resonance imaging (PC-CMR) at 17.6 T. Based on a k-t BLAST (Broad-use Linear Acquisition Speed-up Technique) undersampling scheme, total measurement time could be reduced by a factor of 6. The fast data acquisition enables to quantify the local PWV at several locations along the aortic blood vessel based on the evaluation of local temporal changes in blood flow and vessel cross sectional area. To speed up post processing and to eliminate operator bias, we introduce a new semi-automatic segmentation algorithm to quantify cross-sectional areas of the aortic vessel. The new methods were applied in 10 eight-month-old mice (4 C57BL/6J-mice and 6 ApoE\(^{(-/-)}\)-mice) at 12 adjacent locations along the abdominal aorta. Results: Accelerated data acquisition and semi-automatic post-processing delivered reliable measures for the local PWV, similiar to those obtained with full data sampling and manual segmentation. No statistically significant differences of the mean values could be detected for the different measurement approaches. Mean PWV values were elevated for the ApoE\(^{(-/-)}\)-group compared to the C57BL/6J-group (3.5 ± 0.7 m/s vs. 2.2 ± 0.4 m/s, p < 0.01). A more heterogeneous PWV-distribution in the ApoE \(^{(-/-)}\)-animals could be observed compared to the C57BL/6J-mice, representing the local character of lesion development in atherosclerosis. Conclusion: In the present work, we showed that k-t BLAST PC-MRI enables the measurement of the local PWV distribution in the mouse aorta. The semi-automatic segmentation method based on PC-CMR data allowed rapid determination of local PWV. The findings of this study demonstrate the ability of the proposed methods to non-invasively quantify the spatial variations in local PWV along the aorta of ApoE\(^{(-/-)}\)-mice as a relevant model of atherosclerosis. KW - pulse wave velocity KW - ApoE\(^{(-/-)}\) KW - magnetic resonance imaging KW - phase contrast Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-157696 VL - 19 IS - 77 ER - TY - JOUR A1 - Hergovits, Sabine A1 - Mais, Christine A1 - Haan, Claude A1 - Costa-Pereira, Ana P. A1 - Hermanns, Heike M. T1 - Oncostatin M induces RIG-I and MDA5 expression and enhances the double-stranded RNA response in fibroblasts JF - Journal of Cellular and Molecular Medicine N2 - Interleukin (IL)-6-type cytokines have no direct antiviral activity; nevertheless, they display immune-modulatory functions. Oncostatin M (OSM), a member of the IL-6 family, has recently been shown to induce a distinct number of classical interferon stimulated genes (ISG). Most of them are involved in antigen processing and presentation. However, induction of retinoic acid-inducible gene (RIG)-I-like receptors (RLR) has not been investigated. Here we report that OSM has the capability to induce the expression of the DExD/H-Box RNA helicases RIG-I and melanoma differentiation antigen 5 (MDA5) as well as of the transcription factors interferon regulatory factor (IRF)1, IRF7 and IRF9 in primary fibroblasts. Induction of the helicases depends on tyrosine as well as serine phosphorylation of STAT1. Moreover, we could show that the OSM-induced STAT1 phosphorylation is predominantly counter-regulated by a strong STAT3-dependent SOCS3 induction, as Stat3 as well as Socs3 knock-down results in an enhanced and prolonged helicase and IRF expression. Other factors involved in regulation of STAT1 or IRF1 activity, like protein tyrosine phosphatase, non-receptor type 2 (PTPN2), promyelocytic leukaemia protein (PML) or small ubiquitin-related modifier 1 (SUMO1), play a minor role in OSM-mediated induction of RLR. Remarkably, OSM and interferon-γ (IFN-γ) synergize to mediate transcription of RLR and pre-treatment of fibroblasts with OSM fosters the type I interferon production in response to a subsequent encounter with double-stranded RNA. Together, these findings suggest that the OSM-induced JAK/STAT1 signalling is implicated in virus protection of non-professional immune cells and may cooperate with interferons to enhance RLR expression in these cells. KW - oncostatin M KW - DExD/H-Box RNA helicase KW - RIG-I KW - STAT1 KW - innate immunity Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-159558 VL - 21 IS - 11 ER - TY - JOUR A1 - Helmprobst, Frederik A1 - Lillesaar, Christina A1 - Stigloher, Christian T1 - Expression of sept3, sept5a and sept5b in the Developing and Adult Nervous System of the Zebrafish (Danio rerio) JF - Frontiers in Neuroanatomy N2 - Septins are a highly conserved family of small GTPases that form cytoskeletal filaments. Their cellular functions, especially in the nervous system, still remain largely enigmatic, but there are accumulating lines of evidence that septins play important roles in neuronal physiology and pathology. In order to further dissect septin function in the nervous system a detailed temporal resolved analysis in the genetically well tractable model vertebrate zebrafish (Danio rerio) is crucially necessary. To close this knowledge gap we here provide a reference dataset describing the expression of selected septins (sept3, sept5a and sept5b) in the zebrafish central nervous system. Strikingly, proliferation zones are devoid of expression of all three septins investigated, suggesting that they have a role in post-mitotic neural cells. Our finding that three septins are mainly expressed in non-proliferative regions was further confirmed by double-stainings with a proliferative marker. Our RNA in situ hybridization (ISH) study, detecting sept3, sept5a and sept5b mRNAs, shows that all three septins are expressed in largely overlapping regions of the developing brain. However, the expression of sept5a is much more confined compared to sept3 and sept5b. In contrast, the expression of all the three analyzed septins is largely similar in the adult brain. KW - retinal development KW - sept5b KW - septin KW - RNA in situ hybridization KW - neuronal development KW - sept3 KW - sept5a Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-157625 VL - 11 IS - 6 ER - TY - JOUR A1 - Hellmann, Anna-Maria A1 - Lother, Jasmin A1 - Wurster, Sebastian A1 - Lutz, Manfred B. A1 - Schmitt, Anna Lena A1 - Morton, Charles Oliver A1 - Eyrich, Matthias A1 - Czakai, Kristin A1 - Einsele, Hermann A1 - Loeffler, Juergen T1 - Human and Murine Innate Immune Cell Populations Display Common and Distinct Response Patterns during Their In Vitro Interaction with the Pathogenic Mold Aspergillus fumigatus JF - Frontiers in Immunology N2 - Aspergillus fumigatus is the main cause of invasive fungal infections occurring almost exclusively in immunocompromised patients. An improved understanding of the initial innate immune response is key to the development of better diagnostic tools and new treatment options. Mice are commonly used to study immune defense mechanisms during the infection of the mammalian host with A. fumigatus. However, little is known about functional differences between the human and murine immune response against this fungal pathogen. Thus, we performed a comparative functional analysis of human and murine dendritic cells (DCs), macrophages, and polymorphonuclear cells (PMNs) using standardized and reproducible working conditions, laboratory protocols, and readout assays. A. fumigatus did not provoke identical responses in murine and human immune cells but rather initiated relatively specific responses. While human DCs showed a significantly stronger upregulation of their maturation markers and major histocompatibility complex molecules and phagocytosed A. fumigatus more efficiently compared to their murine counterparts, murine PMNs and macrophages exhibited a significantly stronger release of reactive oxygen species after exposure to A. fumigatus. For all studied cell types, human and murine samples differed in their cytokine response to conidia or germ tubes of A. fumigatus. Furthermore, Dectin-1 showed inverse expression patterns on human and murine DCs after fungal stimulation. These specific differences should be carefully considered and highlight potential limitations in the transferability of murine host–pathogen interaction studies. KW - murine model KW - humans KW - Aspergillus fumigatus KW - innate immune response KW - fungal infection Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-169926 VL - 8 IS - 1716 ER - TY - JOUR A1 - Heidrich, Nadja A1 - Bauriedl, Saskia A1 - Barquist, Lars A1 - Li, Lei A1 - Schoen, Christoph A1 - Vogel, Jörg T1 - The primary transcriptome of Neisseria meningitidis and its interaction with the RNA chaperone Hfq JF - Nucleic Acids Research N2 - Neisseria meningitidis is a human commensal that can also cause life-threatening meningitis and septicemia. Despite growing evidence for RNA-based regulation in meningococci, their transcriptome structure and output of regulatory small RNAs (sRNAs) are incompletely understood. Using dRNA-seq, we have mapped at single-nucleotide resolution the primary transcriptome of N. meningitidis strain 8013. Annotation of 1625 transcriptional start sites defines transcription units for most protein-coding genes but also reveals a paucity of classical σ70-type promoters, suggesting the existence of activators that compensate for the lack of −35 consensus sequences in N. meningitidis. The transcriptome maps also reveal 65 candidate sRNAs, a third of which were validated by northern blot analysis. Immunoprecipitation with the RNA chaperone Hfq drafts an unexpectedly large post-transcriptional regulatory network in this organism, comprising 23 sRNAs and hundreds of potential mRNA targets. Based on this data, using a newly developed gfp reporter system we validate an Hfq-dependent mRNA repression of the putative colonization factor PrpB by the two trans-acting sRNAs RcoF1/2. Our genome-wide RNA compendium will allow for a better understanding of meningococcal transcriptome organization and riboregulation with implications for colonization of the human nasopharynx. KW - RNA KW - Neisseria meningitidis KW - dRNA-seq KW - transcriptome KW - RNA chaperone Hfq Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-170828 VL - 45 IS - 10 ER - TY - JOUR A1 - Heiby, Julia C. A1 - Rajab, Suhaila A1 - Rat, Charlotte A1 - Johnson, Christopher M. A1 - Neuweiler, Hannes T1 - Conservation of folding and association within a family of spidroin N-terminal domains JF - Scientific Reports N2 - Web spiders synthesize silk fibres, nature’s toughest biomaterial, through the controlled assembly of fibroin proteins, so-called spidroins. The highly conserved spidroin N-terminal domain (NTD) is a pH-driven self-assembly device that connects spidroins to super-molecules in fibres. The degree to which forces of self-assembly is conserved across spider glands and species is currently unknown because quantitative measures are missing. Here, we report the comparative investigation of spidroin NTDs originating from the major ampullate glands of the spider species Euprosthenops australis, Nephila clavipes, Latrodectus hesperus, and Latrodectus geometricus. We characterized equilibrium thermodynamics and kinetics of folding and self-association using dynamic light scattering, stopped-flow fluorescence and circular dichroism spectroscopy in combination with thermal and chemical denaturation experiments. We found cooperative two-state folding on a sub-millisecond time scale through a late transition state of all four domains. Stability was compromised by repulsive electrostatic forces originating from clustering of point charges on the NTD surface required for function. pH-driven dimerization proceeded with characteristic fast kinetics yielding high affinities. Results showed that energetics and kinetics of NTD self-assembly are highly conserved across spider species despite the different silk mechanical properties and web geometries they produce. KW - spider KW - N-terminal domain KW - spidroin Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-159272 VL - 7 ER - TY - JOUR A1 - Hefner, Jochen A1 - Berberich, Sara A1 - Lanvers, Elena A1 - Sanning, Maria A1 - Steimer, Ann-Kathrin A1 - Kunzmann, Volker T1 - New insights into frequency and contents of fear of cancer progression/recurrence (FOP/FCR) in outpatients with colorectal carcinoma (CRC) receiving oral capecitabine: a pilot study at a comprehensive cancer center JF - Patient Preference and Adherence N2 - Background: Fear of cancer progression/recurrence (FOP/FCR) is considered one of the most prevalent sources of distress in cancer survivors and associated with lower quality of life and functional impairment. Detailed measures of FOP/FCR are needed because little is known about the knowledge of FOP/FCR, its associations with the patient–doctor relationship, and the rate of adequate therapy. Colorectal cancer (CRC) is one of the most prevalent cancer entities, and oral capecitabine is widely prescribed as treatment. Therefore, we initiated a pilot study to expand the literature on FOP/FCR in CRC outpatients receiving capecitabine and to generate hypotheses for future investigations. Methods: This study included 58 patients treated at a comprehensive cancer center. FOP/FCR was assessed with the Fear of Progression Questionnaire (FOP-Q-SF). Satisfaction with the relationships with doctors was assessed with the Patient–Doctor Relationship Questionnaire-9 (PRDQ-9). Levels of side effects were rated by the patients on a visual analog scale. Clinical data were extracted from the charts. Results: A total of 19 out of 58 patients (36%) suffered from FOP/FCR according to our assessment. Levels of FOP/FCR seemed to be mostly moderate to high. Only four out of the 19 distressed patients (21%) were treated accordingly. Typical side effects of oncological treatment were associated with higher FOP/FCR. Satisfaction with doctor–patient relationships was not associated with FOP/FCR. Regarding single items of FOP/FCR, three out of the five most prevalent fears were associated with close relatives. Discussion: FOP/FCR occurred frequently in more than one in three patients, but was mostly untreated in this sample of consecutive outpatients with CRC receiving oral capecitabine. In detail, most fears were related to family and friends. In addition to an unmet need of patients, our data indicate sources of distress not considered thus far. If replicated in larger studies, results may help to inform intervention development and improve patient care. KW - fear of progression KW - comprehensive management KW - oral anticancer drugs KW - colorectal cancer KW - screening for distress Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-158476 VL - 11 ER - TY - JOUR A1 - Hausoel, A. A1 - Karolak, M. A1 - Şaşιoğlu, E. A1 - Lichtenstein, A. A1 - Held, K. A1 - Katanin, A. A1 - Toschi, A. A1 - Sangiovanni, G. T1 - Local magnetic moments in iron and nickel at ambient and Earth's core conditions JF - Nature Communications N2 - Some Bravais lattices have a particular geometry that can slow down the motion of Bloch electrons by pre-localization due to the band-structure properties. Another known source of electronic localization in solids is the Coulomb repulsion in partially filled d or f orbitals, which leads to the formation of local magnetic moments. The combination of these two effects is usually considered of little relevance to strongly correlated materials. Here we show that it represents, instead, the underlying physical mechanism in two of the most important ferromagnets: nickel and iron. In nickel, the van Hove singularity has an unexpected impact on the magnetism. As a result, the electron–electron scattering rate is linear in temperature, in violation of the conventional Landau theory of metals. This is true even at Earth’s core pressures, at which iron is instead a good Fermi liquid. The importance of nickel in models of geomagnetism may have therefore to be reconsidered. KW - ferromagnetism KW - electronic properties and materials KW - magnetic properties and materials KW - nickel KW - iron Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-170681 VL - 8 IS - 16062 ER - TY - JOUR A1 - Haunert, Jan-Henrik A1 - Wolff, Alexander T1 - Beyond maximum independent set: an extended integer programming formulation for point labeling JF - ISPRS International Journal of Geo-Information N2 - Map labeling is a classical problem of cartography that has frequently been approached by combinatorial optimization. Given a set of features in a map and for each feature a set of label candidates, a common problem is to select an independent set of labels (that is, a labeling without label–label intersections) that contains as many labels as possible and at most one label for each feature. To obtain solutions of high cartographic quality, the labels can be weighted and one can maximize the total weight (rather than the number) of the selected labels. We argue, however, that when maximizing the weight of the labeling, the influences of labels on other labels are insufficiently addressed. Furthermore, in a maximum-weight labeling, the labels tend to be densely packed and thus the map background can be occluded too much. We propose extensions of an existing model to overcome these limitations. Since even without our extensions the problem is NP-hard, we cannot hope for an efficient exact algorithm for the problem. Therefore, we present a formalization of our model as an integer linear program (ILP). This allows us to compute optimal solutions in reasonable time, which we demonstrate both for randomly generated point sets and an existing data set of cities. Moreover, a relaxation of our ILP allows for a simple and efficient heuristic, which yielded near-optimal solutions for our instances. KW - integer linear programming KW - cartographic requirements KW - map labeling KW - point-feature label placement KW - NP-hard Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-158960 VL - 6 IS - 11 ER - TY - JOUR A1 - Hassan, Musa A. A1 - Vasquez, Juan J. A1 - Guo-Liang, Chew A1 - Meissner, Markus A1 - Siegel, T. Nicolai T1 - Comparative ribosome profiling uncovers a dominant role for translational control in \(Toxoplasma\) \(gondii\) JF - BMC Genomics N2 - Background The lytic cycle of the protozoan parasite \(Toxoplasma\) \(gondii\), which involves a brief sojourn in the extracellular space, is characterized by defined transcriptional profiles. For an obligate intracellular parasite that is shielded from the cytosolic host immune factors by a parasitophorous vacuole, the brief entry into the extracellular space is likely to exert enormous stress. Due to its role in cellular stress response, we hypothesize that translational control plays an important role in regulating gene expression in \(Toxoplasma\) during the lytic cycle. Unlike transcriptional profiles, insights into genome-wide translational profiles of \(Toxoplasma\) \(gondii\) are lacking. Methods We have performed genome-wide ribosome profiling, coupled with high throughput RNA sequencing, in intracellular and extracellular \(Toxoplasma\) \(gondii\) parasites to investigate translational control during the lytic cycle. Results Although differences in transcript abundance were mostly mirrored at the translational level, we observed significant differences in the abundance of ribosome footprints between the two parasite stages. Furthermore, our data suggest that mRNA translation in the parasite is potentially regulated by mRNA secondary structure and upstream open reading frames. Conclusion We show that most of the \(Toxoplasma\) genes that are dysregulated during the lytic cycle are translationally regulated. KW - Biology KW - Ribosome profiling KW - RNA-sequencing KW - Translation efficiency KW - Toxoplasma gondii KW - Apicomplexan Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-172376 VL - 18 ER - TY - JOUR A1 - Harter, Philipp A1 - Hauke, Jan A1 - Heitz, Florian A1 - Reuss, Alexander A1 - Kommoss, Stefan A1 - Marmé, Frederik A1 - Heimbach, André A1 - Prieske, Katharina A1 - Richters, Lisa A1 - Burges, Alexander A1 - Neidhardt, Guido A1 - de Gregorio, Nikolaus A1 - El-Balat, Ahmed A1 - Hilpert, Felix A1 - Meier, Werner A1 - Kimmig, Rainer A1 - Kast, Karin A1 - Sehouli, Jalid A1 - Baumann, Klaus A1 - Jackisch, Christian A1 - Park-Simon, Tjoung-Won A1 - Hanker, Lars A1 - Kröber, Sandra A1 - Pfisterer, Jacobus A1 - Gevensleben, Heidrun A1 - Schnelzer, Andreas A1 - Dietrich, Dimo A1 - Neunhöffer, Tanja A1 - Krockenberger, Mathias A1 - Brucker, Sara Y. A1 - Nürnberg, Peter A1 - Thiele, Holger A1 - Altmüller, Janine A1 - Lamla, Josefin A1 - Elser, Gabriele A1 - du Bois, Andreas A1 - Hahnen, Eric A1 - Schmutzler, Rita T1 - Prevalence of deleterious germline variants in risk genes including \(BRCA1/2\) in consecutive ovarian cancer patients (AGO-TR-1) JF - PLoS ONE N2 - Background Identification of families at risk for ovarian cancer offers the opportunity to consider prophylactic surgery thus reducing ovarian cancer mortality. So far, identification of potentially affected families in Germany was solely performed via family history and numbers of affected family members with breast or ovarian cancer. However, neither the prevalence of deleterious variants in \(BRCA1/2\) in ovarian cancer in Germany nor the reliability of family history as trigger for genetic counselling has ever been evaluated. Methods Prospective counseling and germline testing of consecutive patients with primary diagnosis or with platinum-sensitive relapse of an invasive epithelial ovarian cancer. Testing included 25 candidate and established risk genes. Among these 25 genes, 16 genes (\(ATM\), \(BRCA1\), \(BRCA2\), \(CDH1\), \(CHEK2\), \(MLH1\), \(MSH2\), \(MSH6\), \(NBN\), \(PMS2\), \(PTEN\), \(PALB2\), \(RAD51C\), \(RAD51D\), \(STK11\), \(TP53\)) were defined as established cancer risk genes. A positive family history was defined as at least one relative with breast cancer or ovarian cancer or breast cancer in personal history. Results In total, we analyzed 523 patients: 281 patients with primary diagnosis of ovarian cancer and 242 patients with relapsed disease. Median age at primary diagnosis was 58 years (range 16–93) and 406 patients (77.6%) had a high-grade serous ovarian cancer. In total, 27.9% of the patients showed at least one deleterious variant in all 25 investigated genes and 26.4% in the defined 16 risk genes. Deleterious variants were most prevalent in the \(BRCA1\) (15.5%), \(BRCA2\) (5.5%), \(RAD51C\) (2.5%) and \(PALB2\) (1.1%) genes. The prevalence of deleterious variants did not differ significantly between patients at primary diagnosis and relapse. The prevalence of deleterious variants in \(BRCA1/2\) (and in all 16 risk genes) in patients <60 years was 30.2% (33.2%) versus 10.6% (18.9%) in patients \(\geq\)60 years. Family history was positive in 43% of all patients. Patients with a positive family history had a prevalence of deleterious variants of 31.6% (36.0%) versus 11.4% (17.6%) and histologic subtype of high grade serous ovarian cancer versus other showed a prevalence of deleterious variants of 23.2% (29.1%) and 10.2% (14.8%), respectively. Testing only for \(BRCA1/2\) would miss in our series more than 5% of the patients with a deleterious variant in established risk genes. Conclusions 26.4% of all patients harbor at least one deleterious variant in established risk genes. The threshold of 10% mutation rate which is accepted for reimbursement by health care providers in Germany was observed in all subgroups analyzed and neither age at primary diagnosis nor histo-type or family history sufficiently enough could identify a subgroup not eligible for genetic counselling and testing. Genetic testing should therefore be offered to every patient with invasive epithelial ovarian cancer and limiting testing to \(BRCA1/2\) seems to be not sufficient. KW - medicine KW - Genetic causes of cancer KW - ovarian cancer KW - cancer risk factors KW - histology KW - cancer detection and diagnosis KW - breast cancer KW - genetic testing KW - human genetics Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-173553 VL - 12 IS - 10 ER - TY - JOUR A1 - Hankir, Mohammed K. A1 - Patt, Marianne A1 - Patt, Jörg T. W. A1 - Becker, Georg A. A1 - Rullmann, Michael A1 - Kranz, Mathias A1 - Deuther-Conrad, Winnie A1 - Schischke, Kristin A1 - Seyfried, Florian A1 - Brust, Peter A1 - Hesse, Swen A1 - Sabri, Osama A1 - Krügel, Ute A1 - Fenske, Wiebke T1 - Suppressed fat appetite after Roux-en-Y gastric bypass surgery associates with reduced brain mu-opioid receptor availability in diet-induced obese male rats JF - Frontiers in Neuroscience N2 - Brain μ-opioid receptors (MORs) stimulate high-fat (HF) feeding and have been implicated in the distinct long term outcomes on body weight of bariatric surgery and dieting. Whether alterations in fat appetite specifically following these disparate weight loss interventions relate to changes in brain MOR signaling is unknown. To address this issue, diet-induced obese male rats underwent either Roux-en-Y gastric bypass (RYGB) or sham surgeries. Postoperatively, animals were placed on a two-choice diet consisting of low-fat (LF) and HF food and sham-operated rats were further split into ad libitum fed (Sham-LF/HF) and body weight-matched (Sham-BWM) to RYGB groups. An additional set of sham-operated rats always only on a LF diet (Sham-LF) served as lean controls, making four experimental groups in total. Corresponding to a stage of weight loss maintenance for RYGB rats, two-bottle fat preference tests in conjunction with small-animal positron emission tomography (PET) imaging studies with the selective MOR radioligand [\(^{11}\)C]carfentanil were performed. Brains were subsequently collected and MOR protein levels in the hypothalamus, striatum, prefrontal cortex and orbitofrontal cortex were analyzed by Western Blot. We found that only the RYGB group presented with intervention-specific changes: having markedly suppressed intake and preference for high concentration fat emulsions, a widespread reduction in [\(^{11}\)C]carfentanil binding potential (reflecting MOR availability) in various brain regions, and a downregulation of striatal and prefrontal MOR protein levels compared to the remaining groups. These findings suggest that the suppressed fat appetite caused by RYGB surgery is due to reduced brain MOR signaling, which may contribute to sustained weight loss unlike the case for dieting. KW - bariatric surgery KW - caloric-restriction KW - fat appetite KW - Brain μ-opioid receptors KW - positron emission tomography imaging Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-181130 VL - 10 ER - TY - JOUR A1 - Hampe, Irene A. I. A1 - Friedman, Justin A1 - Edgerton, Mira A1 - Morschhäuser, Joachim T1 - An acquired mechanism of antifungal drug resistance simultaneously enables Candida albicans to escape from intrinsic host defenses JF - PLoS Pathogens N2 - The opportunistic fungal pathogen Candida albicans frequently produces genetically altered variants to adapt to environmental changes and new host niches in the course of its life-long association with the human host. Gain-of-function mutations in zinc cluster transcription factors, which result in the constitutive upregulation of their target genes, are a common cause of acquired resistance to the widely used antifungal drug fluconazole, especially during long-term therapy of oropharyngeal candidiasis. In this study, we investigated if C. albicans also can develop resistance to the antimicrobial peptide histatin 5, which is secreted in the saliva of humans to protect the oral mucosa from pathogenic microbes. As histatin 5 has been shown to be transported out of C. albicans cells by the Flu1 efflux pump, we screened a library of C. albicans strains that contain artificially activated forms of all zinc cluster transcription factors of this fungus for increased FLU1 expression. We found that a hyperactive Mrr1, which confers fluconazole resistance by upregulating the multidrug efflux pump MDR1 and other genes, also causes FLU1 overexpression. Similarly to the artificially activated Mrr1, naturally occurring gain-of-function mutations in this transcription factor also caused FLU1 upregulation and increased histatin 5 resistance. Surprisingly, however, Mrr1-mediated histatin 5 resistance was mainly caused by the upregulation of MDR1 instead of FLU1, revealing a previously unrecognized function of the Mdr1 efflux pump. Fluconazole-resistant clinical C. albicans isolates with different Mrr1 gain-of-function mutations were less efficiently killed by histatin 5, and this phenotype was reverted when MRR1 was deleted. Therefore, antimycotic therapy can promote the evolution of strains that, as a consequence of drug resistance mutations, simultaneously have acquired increased resistance against an innate host defense mechanism and are thereby better adapted to certain host niches. KW - antimicrobial resistance KW - transcriptional control KW - Candida albicans KW - transcription factors KW - mutation KW - hyperexpression techniques KW - antifungals KW - point mutation Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-158883 VL - 13 IS - 9 ER - TY - JOUR A1 - Halder, Luke D. A1 - Abdelfatah, Mahmoud A. A1 - Jo, Emeraldo A. H. A1 - Jacobsen, Ilse D. A1 - Westermann, Martin A1 - Beyersdorf, Niklas A1 - Lorkowski, Stefan A1 - Zipfel, Peter F. A1 - Skerka, Christine T1 - Factor H binds to extracellular DNA traps released from human blood monocytes in response to Candida albicans JF - Frontiers in Immunology N2 - Upon systemic infection with human pathogenic yeast Candida albicans (C. albicans), human monocytes and polymorph nuclear neutrophilic granulocytes are the first immune cells to respond and come into contact with C. albicans. Monocytes exert immediate candidacidal activity and inhibit germination, mediate phagocytosis, and kill fungal cells. Here, we show that human monocytes spontaneously respond to C. albicans cells via phagocytosis, decondensation of nuclear DNA, and release of this decondensed DNA in the form of extracellular traps (called monocytic extracellular traps: MoETs). Both subtypes of monocytes (CD14\(^{++}\)CD16\(^−\)/CD14\(^+\)CD16\(^+\)) formed MoETs within the first hours upon contact with C. albicans. MoETs were characterized by the presence of citrullinated histone, myeloperoxidase, lactoferrin, and elastase. MoETs were also formed in response to Staphylococcus aureus and Escherichia coli, indicating a general reaction of monocytes to infectious microbes. MoET induction differs from extracellular trap formation in macrophages as MoETs are not triggered by simvastatin, an inhibitor of cholesterol synthesis and inducer of extracellular traps in macrophages. Extracellular traps from both monocytes and neutrophils activate complement and C3b is deposited. However, factor H (FH) binds via C3b to the extracellular DNA, mediates cofactor activity, and inhibits the induction of the inflammatory cytokine interleukin-1 beta in monocytes. Altogether, the results show that human monocytes release extracellular DNA traps in response to C. albicans and that these traps finally bind FH via C3b to presumably support clearance without further inflammation. KW - Candida KW - monocytes KW - DNA traps KW - MPO KW - factor H Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-181127 VL - 7 ER - TY - JOUR A1 - Halboth, Florian A1 - Roces, Flavio T1 - The construction of ventilation turrets in Atta vollenweideri leaf-cutting ants: Carbon dioxide levels in the nest tunnels, but not airflow or air humidity, influence turret structure JF - PLoS ONE N2 - Nest ventilation in the leaf-cutting ant Atta vollenweideri is driven via a wind-induced mechanism. On their nests, workers construct small turrets that are expected to facilitate nest ventilation. We hypothesized that the construction and structural features of the turrets would depend on the colony’s current demands for ventilation and thus might be influenced by the prevailing environmental conditions inside the nest. Therefore, we tested whether climate-related parameters, namely airflow, air humidity and CO\(_{2}\) levels in the outflowing nest air influenced turret construction in Atta vollenweideri. In the laboratory, we simulated a semi-natural nest arrangement with fungus chambers, a central ventilation tunnel providing outflow of air and an aboveground building arena for turret construction. In independent series, different climatic conditions inside the ventilation tunnel were experimentally generated, and after 24 hours, several features of the built turret were quantified, i.e., mass, height, number and surface area (aperture) of turret openings. Turret mass and height were similar in all experiments even when no airflow was provided in the ventilation tunnel. However, elevated CO\(_{2}\) levels led to the construction of a turret with several minor openings and a larger total aperture. This effect was statistically significant at higher CO\(_{2}\) levels of 5% and 10% but not at 1% CO\(_{2}\). The construction of a turret with several minor openings did not depend on the strong differences in CO\(_{2}\) levels between the outflowing and the outside air, since workers also built permeated turrets even when the CO\(_{2}\) levels inside and outside were both similarly high. We propose that the construction of turrets with several openings and larger opening surface area might facilitate the removal of CO\(_{2}\) from the underground nest structure and could therefore be involved in the control of nest climate in leaf-cutting ants. KW - carbon dioxide KW - animal sociality KW - ants KW - fungi KW - humidity KW - social systems KW - nesting habits KW - fungal structure Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-159133 VL - 12 IS - 11 ER - TY - THES A1 - Hagen, Franziska T1 - Sphingolipids in gonococcal infection T1 - Sphingolipide in der Gonokokken Infektion N2 - Neisseria gonorrhoeae, the causative agent of the sexually transmitted disease gonorrhea, has the potential to spread in the human host and cause a severe complication called disseminated gonococcal infection (DGI). The expression of the major outer membrane porin PorBIA is a characteristic of most gonococci associated with DGI. PorBIA binds to the scavenger receptor expressed on endothelial cells (SREC-I), which mediates the so-called low phosphate-dependent invasion (LPDI). This uptake mechanism enables N. gonorrhoeae to rapidly invade epithelial and endothelial cells in a phosphate-sensitive manner. We recently demonstrated that the neutral sphingomyelinase, which catalyses the hydrolysis of sphingomyelin to ceramide and phosphorylcholine, is required for the LPDI of gonococci in non-phagocytic cells. Neutral sphingomyelinase 2 (NSM2) plays a key role in the early PorBIA signaling by recruiting the PI3 kinase to caveolin. The following activation of the PI3 kinase-dependent downstream signaling leads to the engulfment of the bacteria. As a part of this work, I could confirm the involvement of the NSM2. The role of the enzyme was further elucidated by the generation of antibodies directed against NSM2 and the construction of an epithelium-based NSM2 knockout cell line using CRISPR/Cas9. The knockout of the NSM2 strongly inhibits the LPDI. The invasion could be, however, restored by the complementation of the knockout using an NSM2-GFP construct. However, the results could not be reproduced. In this work, I could show the involvement of further members of the sphingolipid pathway in the PorBIA-mediated invasion. Lipidome analysis revealed an increase of the bioactive molecules ceramide and sphingosine due to gonococcal infection. Both molecules do not only affect the host cell, but seem to influence the bacteria as well: while ceramide seems to be incorporated by the gonococci, sphingosine is toxic for the bacteria. Furthermore, the sphingosine kinase 2 (SPHK2) plays an important role in invasion, since the inhibition and knockdown of the enzyme revealed a negative effect on gonococcal invasion. To elucidate the role of the sphingosine kinases in invasion in more detail, an activity assay was established in this study. Additionally, the impact of the sphingosine-1-phosphate lyase (S1PL) on invasion was investigated. Inhibitor studies and infection experiments conducted with a CRISPR/Cas9 HeLa S1PL knockout cell line revealed a role of the enzyme not only in the PorBIA-mediated invasion, but also in the Opa50/HSPG-mediated gonococcal invasion. The signaling experiments allowed the categorization of the SPHK and S1PL activation in the context of infection. Like the NSM2, both enzymes play a role in the early PorBIA signaling events leading to the uptake of the bacteria. All those findings indicate an important role of sphingolipids in the invasion and survival of N. gonorrhoeae. In the last part of this work, the role of the NSM2 in the inhibition of apoptosis in neutrophils due to gonococcal infection was investigated. It could be demonstrated that the delayed onset of apoptosis is independent of neisserial porin and Opa proteins. Furthermore, the influence of neisserial peptidoglycan on PMN apoptosis was analysed using mutant strains, but no connection could be determined. Since the NSM2 is the most prominent sphingomyelinase in PMNs, fulfils manifold cell physiological functions and has already been connected to apoptosis, the impact of the enzyme on apoptosis inhibition due to gonococcal infection was investigated using inhibitors, with no positive results. N2 - Neisseria gonorrhoeae, der Auslöser der sexuell übertragbaren Krankheit Gonorrhö, hat das Potenzial sich im menschlichen Wirt auszubreiten und eine schwere Komplikation, die disseminierende Gonokokkeninfektion (DGI), hervorzurufen. Die Expression des Porins PorBIA, das eines der häufigsten Proteine der äußeren Membran ist, stellt ein Charakteristikum der mit DGI assoziierten Gonokokken dar. PorBIA bindet an SREC-I (scavenger receptor expressed on endothelial cells), der die phosphatabhängige Invasion (low phosphate-dependent invasion LPDI) vermittelt. Dieser Aufnahmemechanismus erlaubt es N. gonorrhoeae Epithel- sowie Endothelzellen, schnell zu invadieren. Wir haben kürzlich gezeigt, dass die neutrale Sphingomyelinase 2 (NSM2), welche die Hydrolyse von Sphingomyelin zu Ceramid und Phosphorylcholin katalysiert, für die LPDI der Gonokokken in nicht-phagozytische Zellen benötigt wird. Dabei spielt die neutrale Sphingomyelinase 2 eine Schlüsselrolle in der frühen PorBIA Signalübertragung, indem sie die PI3 Kinase zu Caveolin rekrutiert. Die darauffolgende Aktivierung von nachgeschalteten Signalwegen, die von der PI3 Kinase abhängig sind, führt zur Aufnahme der Bakterien. Als Teil dieser Arbeit konnte ich die Beteiligung der NSM2 bestätigen. Die Rolle des Enzyms sollte durch die Herstellung von NSM2-spezifischen Antikörpern und einer auf Epithelzellen basierenden NSM2 knockout Zelllinie, die mit Hilfe des CRISPR/Cas9 Systems hergestellt wurde, aufgeklärt werden. Der knockout der NSM2 führte zu einer starken Inhibition der LPDI. Die Invasion konnte jedoch durch die Komplementation mit Hilfe eines NSM2-GFP Konstruktes wiederhergestellt werden. Wobei die Ergebnisse jedoch nicht reproduziert werden konnten. In dieser Arbeit konnte ich die Beteiligung weiterer Mitglieder des Sphingolipid Signalwegs an der PorBIA-vermittelten Invasion zeigen. Die Lipidomanalysen zeigten einen Anstieg der bioaktiven Moleküle Ceramide und Sphingosin aufgrund der Gonokokkeninfektion. Beide Moleküle beeinflussen nicht nur die Wirtszelle, sondern schienen auch Auswirkungen auf die Bakterien selbst zu haben: während Ceramid anscheinend von den Gonokokken aufgenommen wird, ist Sphingosin für die Bakterien toxisch. Weiterhin spielt die Sphingosinkinase 2 (SPHK2) eine wichtige Rolle in der Invasion, da die Inhibierung und der Knockdown des Enzyms die Gonokokkeninfektion negativ beeinflussen. Um die Rolle der Sphingosinkinasen in der Invasion im Detail zu erforschen, wurde in dieser Arbeit ein Aktivitätsassay etabliert. Außerdem wurde der Einfluss der Sphingosin-1-phosphat Lyase (S1PL) auf die Invasion erforscht. Inhibitorstudien und Infektionsexperimente, die mit einer CRISPR/Cas9 HeLa S1PL knockout Zelllinie durchgeführt wurden, zeigten, dass das Enzym nicht nur eine Rolle in der PorBIA-vermittelten, sondern auch in der Opa50/HSPG-vermittelten Gonokokkeninfektion spielt. Die Experimente, die bezüglich der zugrundeliegenden Signalwege durchgeführt wurden, erlaubten die Einordnung der Aktivierung der SPHK und der S1PL im Kontext der Invasion. Wie auch die NSM2, spielen beide Enzyme in der frühen PorBIA Signalübertragung eine Rolle, die schließlich zur Aufnahme der Bakterien führt. Alle diese Ergebnisse weisen auf eine wichtige Rolle der Sphingolipide für die Invasion und das Überleben von N. gonorrhoeae hin. Im letzten Teil dieser Arbeit, wurde die Inhibierung der Apoptose von Neutrophilen aufgrund der Gonokokkeninfektion untersucht. Es konnte gezeigt werden, dass das verspätete Einsetzen der Apoptose von neisseriellen Porinen und Opa Proteinen unabhängig ist. Weiterhin wurde der Einfluss von neisseriellem Peptidoglycan auf die Apoptose der Neutrophilen mit Hilfe von Mutanten untersucht, wobei eine Verbindung nicht bestätigt werden konnte. Da die NSM2 die bedeutendste Sphingomyelinase in Neutrophilen darstellt, sowie vielfältige zellphysiologische Funktionen erfüllt und im Vorfeld schon mit der Apoptose in Verbindung gebracht wurde, wurde der Einfluss des Enzymes auf die Inhibierung der Apoptose durch die Gonokokkeninfektion mit Hilfe von Inhibitoren überprüft. KW - gonococcal KW - sphingolipids KW - gonococcal infection Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-153852 ER - TY - JOUR A1 - Hagemann, Christine A1 - Streng, Andrea A1 - Kraemer, Alexander A1 - Liese, Johannes G. T1 - Heterogeneity in coverage for measles and varicella vaccination in toddlers – analysis of factors influencing parental acceptance JF - BMC Public Health N2 - Background: In 2004, routine varicella vaccination was introduced in Germany for children aged 11–14 months. Routine measles vaccination had already been introduced in 1973 for the same age group, but coverage is still too low (<95%) in some areas to eliminate measles. The present study assessed varicella and measles vaccination coverage and determinants of parental acceptance in two study regions, situated in Northern and Southern Bavaria (Germany). Methods: From 2009 to 2011, annual cross-sectional parent surveys were performed on random samples of 600 children aged 18–36 months in the Bavarian regions of both Munich and Würzburg. Logistic regression models were used to identify factors associated with varicella and measles vaccination. Results: In 2009, 2010 and 2011, vaccination coverage was lower in Munich than in Würzburg, for both varicella (Munich 53%, 67%, 69% vs. Würzburg 72%, 81%, 83%) and for measles (Munich 88%, 89%, 91% vs. Würzburg 92%, 93%, 95%). Recommendation by the physician was the main independent factor associated with varicella vaccination in both regions (adjusted odd ratios (OR) with 95% confidence interval (CI): Munich OR 19.7, CI 13.6–28.6; Würzburg OR 34.7, CI 22.6–53.2). Attendance at a childcare unit was positively associated with a higher acceptance of varicella vaccination in Munich (OR 1.5, CI 1.1–2.2). Regarding measles vaccination, attendance at a childcare unit was positively associated in both regions (Munich OR 2.0; CI 1.3–3.0; Würzburg OR 1.8; CI 1.1–3.1), and a higher level of parental school education was negatively associated in Würzburg (OR 0.5, CI 0.3–0.9). Conclusions: Vaccination rates differed between regions, with rates constantly higher in Würzburg. Within each region, vaccination rates were lower for varicella than for measles. Measles vaccination status was mainly dependent upon socio-demographic factors (attendance at a childcare unit, parental school education), whereas for the more recently introduced varicella vaccination recommendation by the physician had the strongest impact. Hence, different strategies are needed to further improve vaccination rates for both diseases. KW - varicella KW - measles KW - vaccination KW - coverage KW - surveillance KW - pediatric Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-157827 VL - 17 IS - 724 ER - TY - JOUR A1 - Haertle, Larissa A1 - Maierhofer, Anna A1 - Böck, Julia A1 - Lehnen, Harald A1 - Böttcher, Yvonne A1 - Blüher, Matthias A1 - Schorsch, Martin A1 - Potabattula, Ramya A1 - El Hajj, Nady A1 - Appenzeller, Silke A1 - Haaf, Thomas T1 - Hypermethylation of the non-imprinted maternal MEG3 and paternal MEST alleles is highly variable among normal individuals JF - PLoS ONE N2 - Imprinted genes show parent-specific activity (functional haploidy), which makes them particularly vulnerable to epigenetic dysregulation. Here we studied the methylation profiles of oppositely imprinted genes at single DNA molecule resolution by two independent parental allele-specific deep bisulfite sequencing (DBS) techniques. Using Roche (GSJunior) next generation sequencing technology, we analyzed the maternally imprinted MEST promoter and the paternally imprinted MEG3 intergenic (IG) differentially methylated region (DMR) in fetal cord blood, adult blood, and visceral adipose tissue. Epimutations were defined as paternal or maternal alleles with >50% aberrantly (de)methylated CpG sites, showing the wrong methylation imprint. The epimutation rates (range 2–66%) of the paternal MEST and the maternal MEG3 IG DMR allele, which should be completely unmethylated, were significantly higher than those (0–15%) of the maternal MEST and paternal MEG3 alleles, which are expected to be fully methylated. This hypermethylation of the non-imprinted allele (HNA) was independent of parental origin. Very low epimutation rates in sperm suggest that HNA occurred after fertilization. DBS with Illumina (MiSeq) technology confirmed HNA for the MEST promoter and the MEG3 IG DMR, and to a lesser extent, for the paternally imprinted secondary MEG3 promoter and the maternally imprinted PEG3 promoter. HNA leads to biallelic methylation of imprinted genes in a considerable proportion of normal body cells (somatic mosaicism) and is highly variable between individuals. We propose that during development and differentiation maintenance of differential methylation at most imprinting control regions may become to some extent redundant. The accumulation of stochastic and environmentally-induced methylation errors on the non-imprinted allele may increase epigenetic diversity between cells and individuals. KW - DNA methylation KW - genomic imprinting KW - polymerase chain reaction KW - blood KW - epigenetics KW - sequence alignment KW - sperm Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-170433 VL - 12 IS - 8 ER - TY - JOUR A1 - Haertle, Larissa A1 - El Hajj, Nady A1 - Dittrich, Marcus A1 - Müller, Tobias A1 - Nanda, Indrajit A1 - Lehnen, Harald A1 - Haaf, Thomas T1 - Epigenetic signatures of gestational diabetes mellitus on cord blood methylation JF - Clinical Epigenetics N2 - Background: Intrauterine exposure to gestational diabetes mellitus (GDM) confers a lifelong increased risk for metabolic and other complex disorders to the offspring. GDM-induced epigenetic modifications modulating gene regulation and persisting into later life are generally assumed to mediate these elevated disease susceptibilities. To identify candidate genes for fetal programming, we compared genome-wide methylation patterns of fetal cord bloods (FCBs) from GDM and control pregnancies. Methods and results: Using Illumina’s 450K methylation arrays and following correction for multiple testing, 65 CpG sites (52 associated with genes) displayed significant methylation differences between GDM and control samples. Four candidate genes, ATP5A1, MFAP4, PRKCH, and SLC17A4, from our methylation screen and one, HIF3A, from the literature were validated by bisulfite pyrosequencing. The effects remained significant after adjustment for the confounding factors maternal BMI, gestational week, and fetal sex in a multivariate regression model. In general, GDM effects on FCB methylation were more pronounced in women with insulin-dependent GDM who had a more severe metabolic phenotype than women with dietetically treated GDM. Conclusions: Our study supports an association between maternal GDM and the epigenetic status of the exposed offspring. Consistent with a multifactorial disease model, the observed FCB methylation changes are of small effect size but affect multiple genes/loci. The identified genes are primary candidates for transmitting GDM effects to the next generation. They also may provide useful biomarkers for the diagnosis, prognosis, and treatment of adverse prenatal exposures. KW - fetal programming KW - insulin treatment KW - DNA methylation KW - fetal cord blood KW - gestational diabetes mellitus Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-159459 VL - 9 IS - 28 ER - TY - THES A1 - Gupta, Sanjay Kumar T1 - The human CCHC-type Zinc Finger Nucleic Acid Binding Protein (CNBP) binds to the G-rich elements in target mRNA coding sequences and promotes translation T1 - Das humane CCHC-Typ-Zinkfinger-Nukleinsäure-Binde-Protein (CNBP) bindet an G-reiche Elemente in der kodierenden Sequenz seiner Ziel-mRNAs und fördert deren Translation N2 - The genetic information encoded with in the genes are transcribed and translated to give rise to the functional proteins, which are building block of a cell. At first, it was thought that the regulation of gene expression particularly occurs at the level of transcription by various transcription factors. Recent discoveries have shown the vital role of gene regulation at the level of RNA also known as post-transcriptional gene regulation (PTGR). Apart from non-coding RNAs e.g. micro RNAs, various RNA binding proteins (RBPs) play essential role in PTGR. RBPs have been implicated in different stages of mRNA life cycle ranging from splicing, processing, transport, localization and decay. In last 20 years studies have shown the presence of hundreds of RBPs across eukaryotic systems many of which are widely conserved. Given the rising number of RBPs and their link to human diseases it is quite evident that RBPs have major role in cellular processes and their regulation. The current study is aimed to describe the so far unknown molecular mechanism of CCHC-type Zinc Finger Nucleic Acid Binding Protein (CNBP/ZNF9) function in vivo. CNBP is ubiquitously expressed across various human tissues and is a highly conserved RBP in eukaryotes. It is required for embryonic development in mammals and has been implicated in transcriptional as well as post-transcriptional gene regulation; however, its molecular function and direct target genes remain elusive. Here, we use multiple systems-wide approaches to identify CNBP targets and document the consequences of CNBP binding. We established CNBP as a cytoplasmic RNA-binding-protein and used Photoactivatable Ribonucleoside Enhanced Crosslinking and Immunoprecipitation (PAR-CLIP) to identify direct interactions of CNBP with 4178 mRNAs. CNBP preferentially bound a G-rich motif in the target mRNA coding sequences. Functional analyses, including ribosome profiling, RNA sequencing, and luciferase assays revealed the CNBP mode of action on target transcripts. CNBP binding was found to increase the translational efficiency of its target genes. We hypothesize that this is consistent with an RNA chaperone function of CNBP helping to resolve secondary structures, thus promoting translation. Altogether this study provides a novel mechanism of CNBP function in vivo and acts as a step-stone to study the individual CNBP targets that will bring us closer to understand the disease onset. N2 - Die in der DNA kodierte genetische Information wird transkribiert und translatiert, um funktionelle Proteine zu bilden, welche die Bausteine von Zellen sind. Lange Zeit wurde vermutet, dass die Regulation der Genexpression insbesondere auf dem Level der Transkription erfolgt. Kürzlich gemachte Entdeckungen haben jedoch die zentrale Rolle der Genregulation auf dem Level der RNA, auch bekannt als posttranskriptionelle Genregulation (PTGR), gezeigt. Neben nicht-kodierenden RNAs wie microRNAs, besitzen verschiedene RNA-Binde-Proteine (RBP) eine Schlüsselrolle in der PTGR. RBPs wurden mit diversen Ebenen des mRNA- Lebenszyklus, wie Speißen, Prozessieren, Transport, Lokalisation und Abbau in Verbindung gebracht. In den letzten 20 Jahren haben Studien die Existenz von Hunderten von RBPs in unterschiedlichen eukaryotischen Systemen gezeigt, von denen viele weithin konserviert sind. Bedenkt man die steigende Anzahl entdeckter und charakterisierter RBPs und ihren Bezug zu Krankheiten des Menschen, so ist es offensichtlich, dass RBPs eine große Rolle in der Regulation zellulärer Prozesse besitzen. Das Ziel der hier vorliegenden Studie bestand darin, die bis jetzt unbekannten molekularen Mechanismen der Funktion des CCHC-Typ-Zinkfinger-Nukleinsäure- Binde-Proteins (CNBP/ZNF9) in vivo zu beschreiben. CNBP ist in verschiedenen humanen Geweben ubiquitär exprimiert und ein hoch konserviertes RBP in Eukaryoten. Es ist für die embryonale Entwicklung in Säugetieren notwendig und wurde mit der transkriptionellen und posttranskriptionellen Genregulation in Verbindung gebracht. Seine molekulare Funktion sowie die unmittelbaren Zielgene blieben jedoch unklar. In dieser Studie verwendeten wir systemweit analysierende Methoden um CNPB-Zieltranskripte zu identifizieren und dokumentierten die Folgen der Bindung von CNBP an diese. Wir haben CNBP als ein zytoplasmatisches RNA-Binde-Protein charakterisiert und Quervernetzung und Immunpräzipitation mit photoaktivierbaren Ribonukleotiden (PAR-CLIP) angewendet. Dabei wurden direkte Interaktionen von CNBP mit 4178 mRNAs identifiziert. CNBP bindet bevorzugt an ein G-reiches Motiv in der kodierenden Sequenz der Ziel-mRNA. Funktionale Analysen, unter anderem Ribosom-Profil-Untersuchungen, RNA Sequenzierung und Luciferaseproben, zeigten die Art und Weise, wie CNBP auf die Zieltranskripte wirkt. Die Bindung von CNBP an seine Zieltranskripte erhöht deren Translationseffizienz. Wir vermuten, dass dies eine RNA-Chaperon- Funktion von CNBP darstellt, die hilft Sekundärstrukturen aufzulösen und die Translation zu fördern. Zusammengefasst liefert diese Studie einen neuen Mechanismus der Funktion von CNBP in vivo und kann als Startpunkt dienen um einzelne CNBP Ziele zu untersuchen. Dies wird uns helfen dem Verständnis der Krankheitsentstehung näher zu kommen. ... KW - CNBP KW - RNA binding potein CNBP Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-142917 ER - TY - JOUR A1 - Gulve, Nitish A1 - Frank, Celina A1 - Klepsch, Maximilian A1 - Prusty, Bhupesh K. T1 - Chromosomal integration of HHV-6A during non-productive viral infection JF - Scientific Reports N2 - Human herpesvirus 6A (HHV-6A) and 6B (HHV-6B) are two different species of betaherpesviruses that integrate into sub-telomeric ends of human chromosomes, for which different prevalence rates of integration have been reported. It has been demonstrated that integrated viral genome is stable and is fully retained. However, study of chromosomally integrated viral genome in individuals carrying inherited HHV-6 (iciHHV-6) showed unexpected number of viral DR copies. Hence, we created an in vitro infection model and studied retention of full or partial viral genome over a period of time. We observed an exceptional event where cells retained viral direct repeats (DRs) alone in the absence of the full viral genome. Finally, we found evidence for non-telomeric integration of HHV-6A DR in both cultured cells and in an iciHHV-6 individual. Our results shed light on several novel features of HHV-6A chromosomal integration and provide valuable information for future screening techniques. KW - herpes virus KW - infectious-disease diagnostics Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-158117 VL - 7 IS - 512 ER - TY - JOUR A1 - Grünewald, Benedikt A1 - Lange, Maren D A1 - Werner, Christian A1 - O'Leary, Aet A1 - Weishaupt, Andreas A1 - Popp, Sandy A1 - Pearce, David A A1 - Wiendl, Heinz A1 - Reif, Andreas A1 - Pape, Hans C A1 - Toyka, Klaus V A1 - Sommer, Claudia A1 - Geis, Christian T1 - Defective synaptic transmission causes disease signs in a mouse model of juvenile neuronal ceroid lipofuscinosis JF - eLife N2 - Juvenile neuronal ceroid lipofuscinosis (JNCL or Batten disease) caused by mutations in the CLN3 gene is the most prevalent inherited neurodegenerative disease in childhood resulting in widespread central nervous system dysfunction and premature death. The consequences of CLN3 mutation on the progression of the disease, on neuronal transmission, and on central nervous network dysfunction are poorly understood. We used Cln3 knockout (Cln3\(^{Δex1-6}\)) mice and found increased anxiety-related behavior and impaired aversive learning as well as markedly affected motor function including disordered coordination. Patch-clamp and loose-patch recordings revealed severely affected inhibitory and excitatory synaptic transmission in the amygdala, hippocampus, and cerebellar networks. Changes in presynaptic release properties may result from dysfunction of CLN3 protein. Furthermore, loss of calbindin, neuropeptide Y, parvalbumin, and GAD65-positive interneurons in central networks collectively support the hypothesis that degeneration of GABAergic interneurons may be the cause of supraspinal GABAergic disinhibition. KW - CLN3 KW - mutation KW - mouse model KW - synaptic transmission KW - amygdala KW - hippocampus Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-170004 VL - 6 IS - e28685 ER - TY - JOUR A1 - Grünblatt, Edna A1 - Oneda, Beatrice A1 - Ekici, Arif B. A1 - Ball, Juliane A1 - Geissler, Julia A1 - Uebe, Steffen A1 - Romanos, Marcel A1 - Rauch, Anita A1 - Walitza, Susanne T1 - High resolution chromosomal microarray analysis in paediatric obsessive-compulsive disorder JF - BMC Medical Genomics N2 - Background Obsessive-Compulsive Disorder (OCD) is a common and chronic disorder in which a person has uncontrollable, reoccurring thoughts and behaviours. It is a complex genetic condition and, in case of early onset (EO), the patients manifest a more severe phenotype, and an increased heritability. Large (>500 kb) copy number variations (CNVs) previously associated with autism and schizophrenia have been reported in OCD. Recently, rare CNVs smaller than 500 kb overlapping risk loci for other neurodevelopmental conditions have also been reported in OCD, stressing the importance of examining CNVs of any size range. The aim of this study was to further investigate the role of rare and small CNVs in the aetiology of EO-OCD. Methods We performed high-resolution chromosomal microarray analysis in 121 paediatric OCD patients and in 124 random controls to identify rare CNVs (>50 kb) which might contribute to EO-OCD. Results The frequencies and the size of the observed rare CNVs in the patients did not differ from the controls. However, we observed a significantly higher frequency of rare CNVs affecting brain related genes, especially deletions, in the patients (OR = 1.98, 95% CI 1.02–3.84; OR = 3.61, 95% CI 1.14–11.41, respectively). Similarly, enrichment-analysis of CNVs gene content, performed with three independent methods, confirmed significant clustering of predefined genes involved in synaptic/brain related functional pathways in the patients but not in the controls. In two patients we detected \(de-novo\) CNVs encompassing genes previously associated with different neurodevelopmental disorders \(\textit{NRXN1, ANKS1B, UHRF1BP1}\)). Conclusions Our results further strengthen the role of small rare CNVs, particularly deletions, as susceptibility factors for paediatric OCD. KW - Medicine KW - OCD KW - CNV KW - Enrichment analysis KW - De-novo KW - Early-onset Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-172791 VL - 10 IS - 68 ER - TY - JOUR A1 - Grob, Robin A1 - Fleischmann, Pauline N. A1 - Grübel, Kornelia A1 - Wehner, Rüdiger A1 - Rössler, Wolfgang T1 - The role of celestial compass information in Cataglyphis ants during learning walks and for neuroplasticity in the central complex and mushroom bodies JF - Frontiers in Behavioral Neuroscience N2 - Central place foragers are faced with the challenge to learn the position of their nest entrance in its surroundings, in order to find their way back home every time they go out to search for food. To acquire navigational information at the beginning of their foraging career, Cataglyphis noda performs learning walks during the transition from interior worker to forager. These small loops around the nest entrance are repeatedly interrupted by strikingly accurate back turns during which the ants stop and precisely gaze back to the nest entrance—presumably to learn the landmark panorama of the nest surroundings. However, as at this point the complete navigational toolkit is not yet available, the ants are in need of a reference system for the compass component of the path integrator to align their nest entrance-directed gazes. In order to find this directional reference system, we systematically manipulated the skylight information received by ants during learning walks in their natural habitat, as it has been previously suggested that the celestial compass, as part of the path integrator, might provide such a reference system. High-speed video analyses of distinct learning walk elements revealed that even exclusion from the skylight polarization pattern, UV-light spectrum and the position of the sun did not alter the accuracy of the look back to the nest behavior. We therefore conclude that C. noda uses a different reference system to initially align their gaze directions. However, a comparison of neuroanatomical changes in the central complex and the mushroom bodies before and after learning walks revealed that exposure to UV light together with a naturally changing polarization pattern was essential to induce neuroplasticity in these high-order sensory integration centers of the ant brain. This suggests a crucial role of celestial information, in particular a changing polarization pattern, in initially calibrating the celestial compass system. KW - sky-compass pathway KW - visual orientation KW - look-back behavior KW - desert ants KW - vector navigation KW - memory KW - central complex KW - mushroom body Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-159235 VL - 11 IS - 226 ER - TY - JOUR A1 - Grabarczyk, Daniel B. A1 - Berks, Ben C. T1 - Intermediates in the Sox sulfur oxidation pathway are bound to a sulfane conjugate of the carrier protein SoxYZ JF - PLoS ONE N2 - The Sox pathway found in many sulfur bacteria oxidizes thiosulfate to sulfate. Pathway intermediates are covalently bound to a cysteine residue in the carrier protein SoxYZ. We have used biochemical complementation by SoxYZ-conjugates to probe the identity of the intermediates in the Sox pathway. We find that unconjugated SoxYZ and SoxYZ-S-sulfonate are unlikely to be intermediates during normal turnover in disagreement with current models. By contrast, conjugates with multiple sulfane atoms are readily metabolised by the Sox pathway. The most parsimonious interpretation of these data is that the true carrier species in the Sox pathway is a SoxYZ-S-sulfane adduct. KW - thiosulfates KW - oxidation KW - sulfur KW - cysteine KW - sulfides KW - thermodynamics KW - sulfates KW - sulfites Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-171147 VL - 12 IS - 3 ER - TY - JOUR A1 - Gotschy, Alexander A1 - Bauer, Wolfgang R. A1 - Winter, Patrick A1 - Nordbeck, Peter A1 - Rommel, Eberhard A1 - Jakob, Peter M. A1 - Herold, Volker T1 - Local versus global aortic pulse wave velocity in early atherosclerosis: An animal study in ApoE\(^{-/-}\) mice using ultrahigh field MRI JF - PLoS ONE N2 - Increased aortic stiffness is known to be associated with atherosclerosis and has a predictive value for cardiovascular events. This study aims to investigate the local distribution of early arterial stiffening due to initial atherosclerotic lesions. Therefore, global and local pulse wave velocity (PWV) were measured in ApoE\(^{-/-}\) and wild type (WT) mice using ultrahigh field MRI. For quantification of global aortic stiffness, a new multi-point transit-time (TT) method was implemented and validated to determine the global PWV in the murine aorta. Local aortic stiffness was measured by assessing the local PWV in the upper abdominal aorta, using the flow/area (QA) method. Significant differences between age matched ApoE\(^{-/-}\) and WT mice were determined for global and local PWV measurements (global PWV: ApoE\(^{-/-}\): 2.7 ±0.2m/s vs WT: 2.1±0.2m/s, P<0.03; local PWV: ApoE\(^{-/-}\): 2.9±0.2m/s vs WT: 2.2±0.2m/s, P<0.03). Within the WT mouse group, the global PWV correlated well with the local PWV in the upper abdominal aorta (R\(^2\) = 0.75, P<0.01), implying a widely uniform arterial elasticity. In ApoE\(^{-/-}\) animals, however, no significant correlation between individual local and global PWV was present (R\(^2\) = 0.07, P = 0.53), implying a heterogeneous distribution of vascular stiffening in early atherosclerosis. The assessment of global PWV using the new multi-point TT measurement technique was validated against a pressure wire measurement in a vessel phantom and showed excellent agreement. The experimental results demonstrate that vascular stiffening caused by early atherosclerosis is unequally distributed over the length of large vessels. This finding implies that assessing heterogeneity of arterial stiffness by multiple local measurements of PWV might be more sensitive than global PWV to identify early atherosclerotic lesions. KW - MRI KW - Atherosclerosis KW - Aorta KW - Stiffness KW - Measurement KW - Time measurement KW - Magnetic resonance imaging KW - Mouse models KW - Systole Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-171824 VL - 12 IS - 2 ER - TY - JOUR A1 - Goos, Carina A1 - Dejung, Mario A1 - Janzen, Christian J. A1 - Butter, Falk A1 - Kramer, Susanne T1 - The nuclear proteome of Trypanosoma brucei JF - PLoS ONE N2 - Trypanosoma brucei is a protozoan flagellate that is transmitted by tsetse flies into the mammalian bloodstream. The parasite has a huge impact on human health both directly by causing African sleeping sickness and indirectly, by infecting domestic cattle. The biology of trypanosomes involves some highly unusual, nuclear-localised processes. These include polycistronic transcription without classical promoters initiated from regions defined by histone variants, trans-splicing of all transcripts to the exon of a spliced leader RNA, transcription of some very abundant proteins by RNA polymerase I and antigenic variation, a switch in expression of the cell surface protein variants that allows the parasite to resist the immune system of its mammalian host. Here, we provide the nuclear proteome of procyclic Trypanosoma brucei, the stage that resides within the tsetse fly midgut. We have performed quantitative label-free mass spectrometry to score 764 significantly nuclear enriched proteins in comparison to whole cell lysates. A comparison with proteomes of several experimentally characterised nuclear and non-nuclear structures and pathways confirmed the high quality of the dataset: the proteome contains about 80% of all nuclear proteins and less than 2% false positives. Using motif enrichment, we found the amino acid sequence KRxR present in a large number of nuclear proteins. KRxR is a sub-motif of a classical eukaryotic monopartite nuclear localisation signal and could be responsible for nuclear localization of proteins in Kinetoplastida species. As a proof of principle, we have confirmed the nuclear localisation of six proteins with previously unknown localisation by expressing eYFP fusion proteins. While proteome data of several T. brucei organelles have been published, our nuclear proteome closes an important gap in knowledge to study trypanosome biology, in particular nuclear-related processes. KW - Trypanosoma KW - gambiense KW - Trypanosoma brucei KW - proteomes KW - yellow fluorescent protein KW - mitochondria KW - protein structure KW - histones Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-158572 VL - 12 IS - 7 ER - TY - JOUR A1 - Godbole, Amod A1 - Lyga, Sandra A1 - Lohse, Martin J. A1 - Calebiro, Davide T1 - Internalized TSH receptors en route to the TGN induce local G\(_{S}\)-protein signaling and gene transcription JF - Nature Communications N2 - A new paradigm of G-protein-coupled receptor (GPCR) signaling at intracellular sites has recently emerged, but the underlying mechanisms and functional consequences are insufficiently understood. Here, we show that upon internalization in thyroid cells, endogenous TSH receptors traffic retrogradely to the trans-Golgi network (TGN) and activate endogenous Gs-proteins in the retromer-coated compartment that brings them to the TGN. Receptor internalization is associated with a late cAMP/protein kinase A (PKA) response at the Golgi/TGN. Blocking receptor internalization, inhibiting PKA II/interfering with its Golgi/TGN localization, silencing retromer or disrupting Golgi/TGN organization all impair efficient TSH-dependent cAMP response element binding protein (CREB) phosphorylation. These results suggest that retrograde trafficking to the TGN induces local G\(_{S}\)-protein activation and cAMP/PKA signaling at a critical position near the nucleus, which appears required for efficient CREB phosphorylation and gene transcription. This provides a new mechanism to explain the functional consequences of GPCR signaling at intracellular sites and reveals a critical role for the TGN in GPCR signaling. KW - G protein-coupled receptors KW - fluorescence imaging KW - hormone receptors KW - trans-Golgi network Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-170375 VL - 8 IS - 443 ER - TY - THES A1 - Glasgow, Rupert T1 - The Minimal Self N2 - The aim of The Minimal Self is to undertake a conceptual analysis of the term ‘self’ and thereby establish the minimal conditions that must be met to ascribe selfhood to an entity. This conceptual analysis focuses on what is termed ‘intrinsic reflexivity’, which is taken as the defining feature of selfhood. Three underlying categories of intrinsic reflexivity are distinguished: self-maintenance, self-reproduction and self-containment. These three fundamental categories provide a framework within which it is possible to distinguish entities that can be designated ‘selves’ from entities that are merely ‘self-like’, thus establishing the logical preconditions for the ‘emergence’ of selfhood. By examining the fuzzy borderlines between selves and the merely self-like as manifest in phenomena such as dissipative systems, genetic material, viruses and bacteria, it becomes possible to ascertain a form of ‘minimal selfhood’, a mode of being shared by all selves qua selves. Free-living single-celled organisms such as protozoa are paradigmatic instances of minimal selfhood to the extent that they can be characterized in terms of the three intrinsically reflexive processes of self-maintenance, self-reproduction and self-containment. Minimal selfhood is also presupposed by more complex multicellular selves such as animals. Such an analysis is found to shed light on the origin of life and on the nature of organisms and biological individuals. N2 - Das Ziel dieser Arbeit ist, eine Begriffsanalyse des ,Selbst‘ zu liefern und dadurch die Minimalbedingungen festzuschreiben, die erfüllt werden müssen, um eine Entität als Selbst zu bezeichnen. Im Mittelpunkt dieser Begriffsanalyse steht die sogenannte, intrinsische 'Reflexivität‘, die als wesentliches Merkmal des Selbst verstanden wird. Drei grundlegende Kategorien intrinsischer Reflexivität lassen sich unterscheiden: Selbsterhaltung, Selbstreproduktion und Selbstenthaltung (engl. self-containment). Diese drei grundlegenden Kategorien bilden einen Rahmen, mittels dessen zwischen Entitäten, denen ein Selbst zugeschrieben werden kann, und solchen, die bloss ,selbst-artig‘ sind, differenziert werden kann. Auf diese Weise lassen sich die logischen Voraussetzungen für die ,Entstehung‘ von Selbstheit erhellen. Durch eine Untersuchung der unscharfen Grenzen zwischen dem Selbst und dem bloss ,Selbst-artigen‘ (z.B. dissipativen Systemen, genetischem Material, Viren und Bakterien) wird es möglich, eine Organisationsform des ‚minimalen Selbst‘ festzulegen, d.h. einen Seinsmodus, der allen Selbsten qua Selbsten gemein ist. Freilebende Einzeller wie Protozoen sind insofern paradigmatische Beispiele eines minimalen Selbst, als sie sich durch die drei intrinsisch reflexiven Vorgänge charakterisieren lassen: Selbsterhaltung, Selbst-reproduktion und Selbstenthaltung. Das minimale Selbst bildet ferner die Grundlage für die komplexeren Formen von Selbstheit, die bei vielzelligen Tieren zu finden sind. Eine solche Auffassung des Selbst erweist sich als geeignet, neues Licht auf den Ursprung des Lebens und auf die Eigentümlichkeit von Organismen und biologischen Individuen zu werfen. KW - Selbst KW - self KW - intrinsic reflexivity KW - origin of life KW - Reflexivität KW - Individualität Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-145252 SN - 978-3-95826-052-8 (print) SN - 978-3-95826-053-5 (online) N1 - Parallel erschienen als Druckausgabe in Würzburg University Press, 978-3-95826-052-8, 34,90 EUR PB - Würzburg University Press CY - Würzburg ER - TY - JOUR A1 - Glaser, Kirsten A1 - Silwedel, Christine A1 - Fehrholz, Markus A1 - Waaga-Gasser, Ana M. A1 - Henrich, Birgit A1 - Claus, Heike A1 - Speer, Christian P. T1 - Ureaplasma Species Differentially Modulate Pro- and Anti-Inflammatory Cytokine Responses in Newborn and Adult Human Monocytes Pushing the State Toward Pro-Inflammation JF - Frontiers in Cellular and Infection Microbiology N2 - Background: Ureaplasma species have been associated with chorioamnionitis and preterm birth and have been implicated in the pathogenesis of neonatal short and long-term morbidity. However, being mostly commensal bacteria, controversy remains on the pro-inflammatory capacity of Ureaplasma. Discussions are ongoing on the incidence and impact of prenatal, perinatal, and postnatal infection. The present study addressed the impact of Ureaplasma isolates on monocyte-driven inflammation. Methods: Cord blood monocytes of term neonates and adult monocytes, either native or LPS-primed, were cultured with Ureaplasma urealyticum (U. urealyticum) serovar 8 (Uu8) and Ureaplasma parvum serovar 3 (Up3). Using qRT-PCR, cytokine flow cytometry, and multi-analyte immunoassay, we assessed mRNA and protein expression of tumor necrosis factor (TNF)-α, interleukin (IL)-1β, IL-8, IL-12p40, IL-10, and IL-1 receptor antagonist (IL-1ra) as well as Toll-like receptor (TLR) 2 and TLR4. Results: Uu8 and Up3 induced mRNA expression and protein release of TNF-α, IL-1β and IL-8 in term neonatal and adult monocytes (p < 0.01 and p < 0.05). Intracellular protein expression of TNF-α, IL-1β and IL-8 in Ureaplasma-stimulated cells paralleled those results. Ureaplasma-induced cytokine levels did not significantly differ from LPS-mediated levels except for lower intracellular IL-1β in adult monocytes (Uu8: p < 0.05). Remarkably, ureaplasmas did not induce IL-12p40 response and promoted lower amounts of anti-inflammatory IL-10 and IL-1ra than LPS, provoking a cytokine imbalance more in favor of pro-inflammation (IL-1β/IL-10, IL-8/IL-10 and IL-8/IL-1ra: p < 0.01, vs. LPS). In contrast to LPS, both isolates induced TLR2 mRNA in neonatal and adult cells (p < 0.001 and p < 0.05) and suppressed TLR4 mRNA in adult monocytes (p < 0.05). Upon co-stimulation, Uu8 and Up3 inhibited LPS-induced intracellular IL-1β (p < 0.001 and p < 0.05) and IL-8 in adult monocytes (p < 0.01), while LPS-induced neonatal cytokines were maintained or aggravated (p < 0.05). Conclusion: Our data demonstrate a considerable pro-inflammatory capacity of Ureaplasma isolates in human monocytes. Stimulating pro-inflammatory cytokine responses while hardly inducing immunomodulatory and anti-inflammatory cytokines, ureaplasmas might push monocyte immune responses toward pro-inflammation. Inhibition of LPS-induced cytokines in adult monocytes in contrast to sustained inflammation in term neonatal monocytes indicates a differential modulation of host immune responses to a second stimulus. Modification of TLR2 and TLR4 expression may shape host susceptibility to inflammation. KW - Ureaplasma KW - infection KW - inflammation KW - immunomodulation KW - chorioamnionitis KW - neonatal morbidity KW - monocytes KW - cord blood Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-169958 VL - 7 IS - 484 ER - TY - JOUR A1 - Gilbert, Fabian A1 - Klein, Detlef A1 - Weng, Andreas Max A1 - Köstler, Herbert A1 - Schmitz, Benedikt A1 - Schmalzl, Jonas A1 - Böhm, Dirk T1 - Supraspinatus muscle elasticity measured with real time shear wave ultrasound elastography correlates with MRI spectroscopic measured amount of fatty degeneration JF - BMC Muscoskeletal Disorders N2 - Background: Fatty Degeneration (FD) of the rotator cuff muscles influences functional and anatomical outcome after rotator cuff repair. The MRI based estimation of fatty degeneration is the gold standard. There is some evidence that Ultrasound elastography (EUS) can detect local differences of tissue stiffness in muscles and tendons. Shear-wave elastography (SWE) was evaluated to determine the extent to which shear wave velocity was associated with measures of fatty degeneration. MRI-spectroscopic fat measurement was used as a reference to quantify the amount of fat in the muscle belly. Methods: Forty-two patients underwent SWE of the supraspinatus muscles at its thickest diameter. After ultrasound evaluation an MRI-spectroscopic fat measurement of the supraspinatus muscle was performed using the SPLASH-technique. A gel filled capsule was used to locate the measured area in the MRI. The values of shear wave velocity (SWV) measured with SWE and spectroscopic fat measurement were correlated statistically using Pearson’s correlation test. Results: Correlation of the fat amount measured with MRI-spectroscopy and the SWV measured with SWE was ρ =0.82. Spectroscopic measured fat ratio of the supraspinatus muscle ranged from 0% to 77.41% and SWV from 1.59 m/s to 5.32 m/s. In 4 patients no sufficient SWE could be performed, these individuals showed a larger diameter of the overlying soft tissue. SWV measured with SWE showed a good correlation with MRI spectroscopic fat amount of the supraspinatus muscle. Conclusion: These preliminary data suggest that SWE may be a sufficient tool in detecting and estimating the amount of fatty degeneration in the supraspinatus muscle in real time. Large overlying soft tissue may be a limitation in performing sufficient EUS. KW - shoulder surgery KW - rotator cuff KW - MRI KW - ultrasound KW - fatty degeneration Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-159378 VL - 18 IS - 549 ER - TY - JOUR A1 - Gil-Pulido, Jesus A1 - Cochain, Clement A1 - Lippert, Malte A. A1 - Schneider, Nicole A1 - Butt, Elke A1 - Amézaga, Núria A1 - Zernecke, Alma T1 - Deletion of Batf3-dependent antigen-presenting cells does not affect atherosclerotic lesion formation in mice JF - PLoS ONE N2 - Atherosclerosis is the main underlying cause for cardiovascular events such as myocardial infarction and stroke and its development might be influenced by immune cells. Dendritic cells (DCs) bridge innate and adaptive immune responses by presenting antigens to T cells and releasing a variety of cytokines. Several subsets of DCs can be discriminated that engage specific transcriptional pathways for their development. Basic leucine zipper transcription factor ATF-like 3 (Batf3) is required for the development of classical CD8α\(^{+}\) and CD103\(^{+}\) DCs. By crossing mice deficient in Batf3 with atherosclerosis-prone low density lipoprotein receptor (Ldlr\(^{−/-}\))-deficient mice we here aimed to further address the contribution of Batf3-dependent CD8α\(^{+}\) and CD103\(^{+}\) antigen-presenting cells to atherosclerosis. We demonstrate that deficiency in Batf3 entailed mild effects on the immune response in the spleen but did not alter atherosclerotic lesion formation in the aorta or aortic root, nor affected plaque phenotype in low density lipoprotein receptor-deficient mice fed a high fat diet. We thus provide evidence that Batf3-dependent antigen-presenting cells do not have a prominent role in atherosclerosis. KW - atherosclerosis KW - dendritic cells KW - Batf3 KW - deficiency Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-170535 VL - 12 IS - 8 ER - TY - JOUR A1 - Giampaolo, Sabrina A1 - Wójcik, Gabriela A1 - Serfling, Edgar A1 - Patra, Amiya K. T1 - Interleukin-2-regulatory T cell axis critically regulates maintenance of hematopoietic stem cells JF - Oncotarget N2 - The role of IL-2 in HSC maintenance is unknown. Here we show that Il2\(^{−/-}\) mice develop severe anomalies in HSC maintenance leading to defective hematopoiesis. Whereas, lack of IL-2 signaling was detrimental for lympho- and erythropoiesis, myelopoiesis was enhanced in Il2\(^{−/-}\) mice. Investigation of the underlying mechanisms of dysregulated hematopoiesis in Il2\(^{−/-}\) mice shows that the IL-2-T\(_{reg}\) cell axis is indispensable for HSC maintenance and normal hematopoiesis. Lack of T\(_{reg}\) activity resulted in increased IFN-γ production by activated T cells and an expansion of the HSCs in the bone marrow (BM). Though, restoring T\(_{reg}\) population successfully rescued HSC maintenance in Il2\(^{-/-}\) mice, preventing IFN-γ activity could do the same even in the absence of T\(_{reg}\) cells. Our study suggests that equilibrium in IL-2 and IFN-γ activity is critical for steady state hematopoiesis, and in clinical conditions of BM failure, IL-2 or anti-IFN-γ treatment might help to restore hematopoiesis. KW - immunity KW - hematopoietic stem cells KW - IL-2 KW - treg cells KW - IL-10 KW - IFN-γ KW - immunology and microbiology section KW - immune response Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-170947 VL - 8 IS - 18 ER - TY - JOUR A1 - Ghosh, Sujal A1 - Hönscheid, Andrea A1 - Dückers, Gregor A1 - Ginzel, Sebastian A1 - Gohlke, Holger A1 - Gombert, Michael A1 - Kempkes, Bettina A1 - Klapper, Wolfram A1 - Kuhlen, Michaela A1 - Laws, Hans-Jürgen A1 - Linka, René Martin A1 - Meisel, Roland A1 - Mielke, Christian A1 - Niehues, Tim A1 - Schindler, Detlev A1 - Schneider, Dominik A1 - Schuster, Friedhelm R. A1 - Speckmann, Carsten A1 - Borkhardt, Arndt T1 - Human RAD52 - a novel player in DNA repair in cancer and immunodeficiency JF - Haematologica N2 - No abstract available. KW - human medicine KW - DNA-Repair KW - cancer KW - immunodeficiency KW - RAD52 Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-180862 VL - 102 IS - 2 ER - TY - JOUR A1 - Genheimer, Hannah A1 - Andreatta, Marta A1 - Asan, Esther A1 - Pauli, Paul T1 - Reinstatement of contextual conditioned anxiety in virtual reality and the effects of transcutaneous vagus nerve stimulation in humans JF - Scientific Reports N2 - Since exposure therapy for anxiety disorders incorporates extinction of contextual anxiety, relapses may be due to reinstatement processes. Animal research demonstrated more stable extinction memory and less anxiety relapse due to vagus nerve stimulation (VNS). We report a valid human three-day context conditioning, extinction and return of anxiety protocol, which we used to examine effects of transcutaneous VNS (tVNS). Seventy-five healthy participants received electric stimuli (unconditioned stimuli, US) during acquisition (Day1) when guided through one virtual office (anxiety context, CTX+) but never in another (safety context, CTX−). During extinction (Day2), participants received tVNS, sham, or no stimulation and revisited both contexts without US delivery. On Day3, participants received three USs for reinstatement followed by a test phase. Successful acquisition, i.e. startle potentiation, lower valence, higher arousal, anxiety and contingency ratings in CTX+ versus CTX−, the disappearance of these effects during extinction, and successful reinstatement indicate validity of this paradigm. Interestingly, we found generalized reinstatement in startle responses and differential reinstatement in valence ratings. Altogether, our protocol serves as valid conditioning paradigm. Reinstatement effects indicate different anxiety networks underlying physiological versus verbal responses. However, tVNS did neither affect extinction nor reinstatement, which asks for validation and improvement of the stimulation protocol. KW - psychology KW - vagus nerve stimulation KW - contextual anxiety KW - fear conditioning KW - extinction Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-169892 VL - 7 IS - 17886 ER - TY - THES A1 - Geißler, Florian T1 - Transport properties of helical Luttinger liquids T1 - Transporteigenschaften von helikalen Luttinger Flüssigkeiten N2 - The prediction and the experimental discovery of topological insulators has set the stage for a novel type of electronic devices. In contrast to conventional metals or semiconductors, this new class of materials exhibits peculiar transport properties at the sample surface, as conduction channels emerge at the topological boundaries of the system. In specific materials with strong spin-orbit coupling, a particular form of a two-dimensional topological insulator, the quantum spin Hall state, can be observed. Here, the respective one-dimensional edge channels are helical in nature, meaning that there is a locking of the spin orientation of an electron and its direction of motion. Due to the symmetry of time-reversal, elastic backscattering off interspersed impurities is suppressed in such a helical system, and transport is approximately ballistic. This allows in principle for the realization of novel energy-efficient devices, ``spintronic`` applications, or the formation of exotic bound states with non-Abelian statistics, which could be used for quantum computing. The present work is concerned with the general transport properties of one-dimensional helical states. Beyond the topological protection mentioned above, inelastic backscattering can arise from various microscopic sources, of which the most prominent ones will be discussed in this Thesis. As it is characteristic for one-dimensional systems, the role of electron-electron interactions can be of major importance in this context. First, we review well-established techniques of many-body physics in one dimension such as perturbative renormalization group analysis, (Abelian) bosonization, and Luttinger liquid theory. The latter allow us to treat electron interactions in an exact way. Those methods then are employed to derive the corrections to the conductance in a helical transport channel, that arise from various types of perturbations. Particularly, we focus on the interplay of Rashba spin-orbit coupling and electron interactions as a source of inelastic single-particle and two-particle backscattering. It is demonstrated, that microscopic details of the system, such as the existence of a momentum cutoff, that restricts the energy spectrum, or the presence of non-interacting leads attached to the system, can fundamentally alter the transport signature. By comparison of the predicted corrections to the conductance to a transport experiment, one can gain insight about the microscopic processes and the structure of a quantum spin Hall sample. Another important mechanism we analyze is backscattering induced by magnetic moments. Those findings provide an alternative interpretation of recent transport measurements in InAs/GaSb quantum wells. N2 - Mit der Vorhersage und der experimentellen Entdeckung von topologischen Isolatoren wurde die Grundlage für eine vollkommen neue Art von elektronischen Bauelementen geschaffen. Diese neue Klasse von Materialien zeichnet sich gegenüber herkömmlichen Metallen und Halbleitern durch besondere Transporteigenschaften der Probenoberfläche aus, wobei elektrische Leitung in Randkanälen an den topologischen Grenzflächen des Systems stattfindet. Eine spezielle Form des zweidimensionalen topologischen Isolators stellt der Quanten-Spin-Hall-Zustand dar, welcher in bestimmten Materialien mit starker Spin-Bahn-Kopplung beobachtet werden kann. Die hier auftretenden eindimensionalen Leitungskanäle sind von helikaler Natur, was bedeutet, dass die Orientierung des Spins eines Elektrons und seine Bewegungsrichtung fest miteinander gekoppelt sind. Aufgrund von Symmetrien wie Zeitumkehr ist elastische Rückstreuung an eventuell vorhandenen Störstellen in solchen helikalen Kanälen verboten, sodass elektrische Leitung als nahezu ballistisch betrachtet werden kann. Prinzipiell bieten sich dadurch neue Möglichkeiten zur Konstruktion von energieeffizienten Transistoren, “Spintronik“-Bauelementen, oder zur Erzeugung von speziellen Zuständen, die für den Betrieb eines Quantencomputers benutzt werden könnten. Die vorliegende Arbeit beschäftigt sich mit den allgemeinen Transporteigenschaften von eindimensionalen, helikalen Randzuständen. Neben dem oben erwähnten topologischen Schutz gibt es zahlreiche Störquellen, die inelastische Rückstreuprozesse induzieren. Die wichtigsten davon werden im Rahmen dieser Dissertation beleuchtet. Entscheidend wirkt hierbei oft die Rolle von Elektron-Elektron-Wechselwirkungen, welche in eindimensionalen Systemen generell von großer Bedeutung ist. Zunächst werden bewährte Techniken der Festkörperphysik wie etwa Abelsche Bosonisierung (mithilfe derer Wechselwirkungen in einer Raumdimension exakt berücksichtigt werden können), die Theorie von Luttinger Flüssigkeiten, oder die störungstheoretische Renormierungsgruppenanalyse rekapituliert. Diese Methoden werden im Weiteren benutzt, um die Korrekturen zum Leitwert eines helikalen Transportkanals zu berechnen, welche aufgrund von ausgewählten Störungen auftreten können. Ein Fokus liegt hierbei auf dem Zusammenspiel vonWechselwirkungen und Rashba Spin-Bahn-Kopplung als Quelle inelastischer Ein-Teilchen- oder Zwei-Teilchen-Rückstreuung. Mikroskopische Details wie etwa die Existenz einer Impulsobergrenze, welche das Energiespektrum beschränkt, oder die Anwesenheit von wechselwirkungsfreien Spannungskontakten, sind dabei von grundsätzlicher Bedeutung. Die charakteristische Form der vorhergesagten Korrekturen kann dazu dienen, die Struktur und die mikroskopischen Vorgänge im Inneren einer Quanten-Spin- Hall-Probe besser zu verstehen. Ein weiterer grundlegender Mechanismus ist Rückstreuung verursacht durch magnetische Momente. Aus der entsprechenden Analyse der Korrekturen zur Leitfähigkeit ergeben sich interessante Übereinstimmungen mit aktuellen Experimenten in InAs/GaSb Quantentrögen. KW - Topologischer Isolator KW - Luttinger-Flüssigkeit KW - 1D transport KW - Backscattering KW - Correlated electron effects KW - Transporteigenschaft KW - Elektronischer Transport KW - Dimension 1 Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-153450 ER - TY - JOUR A1 - Geiger, Julia A1 - Hirtler, Daniel A1 - Gottfried, Kristina A1 - Rahman, Ozair A1 - Bollache, Emilie A1 - Barker, Alex J. A1 - Markl, Michael A1 - Stiller, Brigitte T1 - Longitudinal Evaluation of Aortic Hemodynamics in Marfan Syndrome: New Insights from a 4D Flow Cardiovascular Magnetic Resonance Multi-Year Follow-Up Study JF - Journal of Cardiovascular Magnetic Resonance N2 - Background The aim of this 4D flow cardiovascular magnetic resonance (CMR) follow-up study was to investigate longitudinal changes in aortic hemodynamics in adolescent patients with Marfan syndrome (MFS). Methods 4D flow CMR for the assessment of in-vivo 3D blood flow with full coverage of the thoracic aorta was performed twice (baseline scan t1/follow-up scan t2) in 19 adolescent MFS patients (age at t1: 12.7 ± 3.6 years, t2: 16.2 ± 4.3 years) with a mean follow-up duration of 3.5 ± 1.2 years. Ten healthy volunteers (24 ± 3.8 years) served as a control group. Data analysis included aortic blood flow visualization by color-coded 3D pathlines, and grading of flow patterns (helices/vortices) on a 3-point scale (none, moderate, severe; blinded reading, 2 observers). Regional aortic peak systolic velocities and systolic 3D wall shear stress (WSS) along the entire aortic wall were quantified. Z-Scores of the aortic root and proximal descending aorta (DAo) were assessed. Results Regional systolic WSS was stable over the follow-up duration, except for a significant decrease in the proximal inner DAo segment (p = 0.02) between t1 and t2. MFS patients revealed significant lower mean systolic WSS in the proximal inner DAo compared with volunteers (0.78 ± 0.15 N/m\(^{2}\)) at baseline t1 (0.60 ± 0.18 N/m\(^{2}\); p = 0.01) and follow-up t2 (0.55 ± 0.16 N/m\(^{2}\); p = 0.001). There were significant relationships (p < 0.01) between the segmental WSS in the proximal inner DAo, DAo Z-scores (r = −0.64) and helix/vortex pattern grading (r = −0.55) at both t1 and t2. The interobserver agreement for secondary flow patterns assessment was excellent (Cohen’s k = 0.71). Conclusions MFS patients have lower segmental WSS in the inner proximal DAo segment which correlates with increased localized aberrant vortex/helix flow patterns and an enlarged diameter at one of the most critical sites for aortic dissection. General aortic hemodynamics are stable but these subtle localized DAo changes are already present at young age and tend to be more pronounced in the course of time. KW - Marfan syndrome KW - wall shear stress KW - hemodynamics KW - 4D flow cardiovascular magnetic resonance KW - follow-up KW - aorta Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-171119 VL - 19 IS - 33 ER - TY - THES A1 - Gehring, Jennifer T1 - Functional analysis of the latrophilin homolog dCirl in Drosophila melanogaster T1 - Funktionelle Analyse des latrophilin Homologs dCirl in Drosophila melanogaster N2 - Latrophilin, alternatively named calcium-independent receptor of α-latrotoxin (CIRL), resembles a prototype of the adhesion class G-protein coupled receptors (GPCRs). Initially identified as a high-affinity receptor for α-latrotoxin, a component of the black widow spider, latrophilins are now associated with various distinct functions, such as synaptic exocytosis, tissue polarity and fertility (Tobaben et al., 2002; Langenhan et al., 2009; Promel et al., 2012). Despite these exploratory efforts the precise subcellular localisation as well as the endogenous ligand of CIRL still remains elusive. In this work genetic experiments, imaging approaches and behavioural studies have been used to unravel the localisation and physiological function of the latrophilin homolog dCirl in Drosophila melanogaster. Containing only one latrophilin homolog together with its genetic accessibility and well-established transgenic approaches, Drosophila seemed an ideally suited model organism. The present study showed that dCirl is widely expressed in the larval central nervous system including moto- and sensory neurons. Further, this work revealed that removal of the latrophilin homolog does not greatly affect synaptic transmission but it seems that aspects of the postsynaptic structural layout are controlled by dCIRL in the fruit fly. Additionally, dCirl expression at the transcriptional level was confirmed in larval and adult chordotonal organs, specialised mechanosensors implicated in proprioception (Eberl, 1999). Expression of dCIRL at the protein level could not yet been confirmed in moto- and sensory neurons likely due to low endogenous expression. However, behavioural studies using dCirl knockout mutant larvae indicated a putative mechanosensory function of dCIRL regarding touch sensitivity and locomotion behaviour. The second part of this thesis presents a strategy to examine interactions between several presynaptic proteins in living cells. The attempt described in this work is based on the discovery that GFP when split into two non-fluorescent fragments can form a fluorescent complex. The association of the fragments can be facilitated by fusing them to two proteins that interact with each other. Therefore, the split GFP method enables direct visualization of synaptic protein interactions in living cells. In initial experiments I could show that full length reporter protein fusions with n-Synaptobrevin (n-Syb), Synaptotagmin (Syt) and Syntaxin (Syx) allow expression in Drosophila and confirmed that fusion to either end of each synaptic protein did not impair expression or influence the viability of transgenic flies. Further, transgenes containing protein fusions of Syx, Syt, and n-Syb with split GFP fragments were established in previous studies (Gehring, 2010). The present work characterises the interaction of these protein fusions during different stages of synaptic vesicle turnover at active zones such as synaptic vesicle docking at the presynaptic membrane and vesicle fusion. These results suggest that the spGFP assay seems only partly suitable for resolving fast and transient protein-protein interactions at larval Drosophila active zones in vivo. N2 - Latrophilin, auch als Calcium-unabhängiger Rezeptor für α-Latrotoxin (CIRL) bezeichnet, repräsentiert einen Prototyp der Adhäsions G-Protein gekoppelten Rezeptorklasse. Ursprünglich als hoch-affiner Rezeptor für α-Latrotoxin entdeckt, werden Latrophiline heute mit zahlreichen verschiedenen Funktionen, wie synaptischer Exozytose, Gewebepolarität und Fertilität assoziiert (Tobaben et al., 2002; Langenhan et al., 2009; Promel et al., 2012). Trotz dieser Fortschritte sind die genaue subzelluläre Lokalisation sowie der endogene Ligand noch weitgehend unbekannt. Diese Studie verwendet genetische Ansätze, bildgebende Verfahren und Verhaltensstudien, um die Lokalisation und physiologische Funktion des Latrophilinhomologs dCirl in Drosophila melanogaster aufzuklären. Die Tatsache, dass Drosophila nur ein einziges Latrophilin Homolog besitzt, zusammen mit den genetischen Möglichkeiten und den sehr gut etablierten transgenen Methoden, machen die Fruchtfliege zu einem idealen Modellorganismus. Die erhobenen Daten belegen, dass dCirl verstärkt im larvalen Nervensystem, einschließlich motorischer und sensorischer Neurone, exprimiert wird. Weiterhin konnte gezeigt werden, dass in dCirl Knockout-Mutanten die basale synaptische Transmission unverändert ist, vermutlich aber Teile der postsynaptischen Struktur durch dCIRL in der Fruchtfliege kontrolliert werden. Zusätzlich konnte nachgewiesen werden, dass dCirl auf Transkriptionsebene in den larvalen und adulten Chordotonalorganen exprimiert wird, spezifische Mechanosensoren, die an der Propriozeption beteiligt sind (Eberl, 1999). Die Expression von dCIRL auf Proteinebene in motorischen und sensorischen Neuronen konnte aufgrund niedriger endogener Expressionslevel noch nicht verifiziert werden. Allerdings deuten Verhaltensstudien, die Berührungsempfindlichkeit und Lokomotion untersuchen, auf eine mögliche mechanosensorische Funktion von dCIRL in den Larven von Drosophila hin. Der zweite Teil dieser Arbeit zeigt eine Strategie auf, die es ermöglicht, das Zusammenspiel verschiedener präsynaptischer Proteine in vivo zu untersuchen. Die hier beschriebene Methode basiert auf der Entdeckung, dass sich zwei nicht-fluoreszierende Fragmente des grün leuchtenden Proteins (GFP), zu einem fluoreszierenden Komplex zusammenlagern können. Diese geteilten GFP-Fragmente (split-GFPs) werden mit zwei unterschiedlichen Proteinen fusioniert, die miteinander interagieren. Die split-GFP Methode ermöglicht so eine direkte Visualisierung von Protein-Protein-Interaktionen in lebenden Zellen. In ersten Experimenten konnte ich zeigen, dass Synaptobrevin (n-Syb), Synaptotagmin (Syt) und Syntaxin (Syx), die mit vollständigen Fluorophoren markiert wurden, für die Expression in Drosophila geeignet sind und bestätigen, dass sowohl die N-terminale als auch die C-terminale Proteinfusion möglich ist. Zudem konnte durch diese Versuche die Überlebensfähigkeit der transgenen Fliegen überprüft werden. In vorangegangenen Studien wurden Transgene hergestellt, die Proteinfusionen von n-Syb, Syt und Syx mit split-GFP Fragmenten enthalten (Gehring, 2010). Die vorliegende Arbeit charakterisiert die Wechselwirkung dieser Proteinfusionen während unterschiedlicher Stufen der synaptischen Vesikelfreisetzung an der aktiven Zone, wie beispielsweise dem Vesikel-docking an der präsynaptischen Membran und der Vesikelfusion. Die Ergebnisse dieser Studie deuten darauf hin, dass die split-GFP Technik nur bedingt geeignet ist um schnelle und transiente Protein-Protein Interaktionen an der larvalen aktiven Zone von Drosophila in vivo darzustellen. KW - Taufliege KW - G-Protein gekoppelte Rezeptor KW - Drosophila melanogaster KW - Cirl KW - Latrophilin Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-101061 ER - TY - THES A1 - Gebert, Steffen Christian T1 - Architectures for Softwarized Networks and Their Performance Evaluation T1 - Architekturen für Software-basierte Netze und deren Leistungsbewertung N2 - This thesis contributes to several issues in the context of SDN and NFV, with an emphasis on performance and management. The main contributions are guide lines for operators migrating to software-based networks, as well as an analytical model for the packet processing in a Linux system using the Kernel NAPI. N2 - In der Dissertation werden mehrere Problemstellungen im Kontext von SDN und NFV, vor allem hinsichtlich Performance und Management, bearbeitet. Die Hauptbeiträge sind Guidelines für Netzbetreiber zum Management Software-basierter Netze sowie ein analytisches Modell, welches den Paketverarbeitungsprozess in der Linux Kernel NAPI beschreibt. T3 - Würzburger Beiträge zur Leistungsbewertung Verteilter Systeme - 01/17 KW - Telekommunikationsnetz KW - Software-based Networks KW - Software Defined Networking KW - Network Functions Virtualisation KW - Netzwerk KW - Software-defined networking KW - Leistungsbewertung Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-150634 SN - 1432-8801 ER - TY - THES A1 - Gaviraghi, Beatrice T1 - Theoretical and numerical analysis of Fokker-Planck optimal control problems for jump-diffusion processes T1 - Theoretische und numerische Analyse von Fokker-Planck Optimalsteuerungsproblemen von Sprung-Diffusions-Prozessen N2 - The topic of this thesis is the theoretical and numerical analysis of optimal control problems, whose differential constraints are given by Fokker-Planck models related to jump-diffusion processes. We tackle the issue of controlling a stochastic process by formulating a deterministic optimization problem. The key idea of our approach is to focus on the probability density function of the process, whose time evolution is modeled by the Fokker-Planck equation. Our control framework is advantageous since it allows to model the action of the control over the entire range of the process, whose statistics are characterized by the shape of its probability density function. We first investigate jump-diffusion processes, illustrating their main properties. We define stochastic initial-value problems and present results on the existence and uniqueness of their solutions. We then discuss how numerical solutions of stochastic problems are computed, focusing on the Euler-Maruyama method. We put our attention to jump-diffusion models with time- and space-dependent coefficients and jumps given by a compound Poisson process. We derive the related Fokker-Planck equations, which take the form of partial integro-differential equations. Their differential term is governed by a parabolic operator, while the nonlocal integral operator is due to the presence of the jumps. The derivation is carried out in two cases. On the one hand, we consider a process with unbounded range. On the other hand, we confine the dynamic of the sample paths to a bounded domain, and thus the behavior of the process in proximity of the boundaries has to be specified. Throughout this thesis, we set the barriers of the domain to be reflecting. The Fokker-Planck equation, endowed with initial and boundary conditions, gives rise to Fokker-Planck problems. Their solvability is discussed in suitable functional spaces. The properties of their solutions are examined, namely their regularity, positivity and probability mass conservation. Since closed-form solutions to Fokker-Planck problems are usually not available, one has to resort to numerical methods. The first main achievement of this thesis is the definition and analysis of conservative and positive-preserving numerical methods for Fokker-Planck problems. Our SIMEX1 and SIMEX2 (Splitting-Implicit-Explicit) schemes are defined within the framework given by the method of lines. The differential operator is discretized by a finite volume scheme given by the Chang-Cooper method, while the integral operator is approximated by a mid-point rule. This leads to a large system of ordinary differential equations, that we approximate with the Strang-Marchuk splitting method. This technique decomposes the original problem in a sequence of different subproblems with simpler structure, which are separately solved and linked to each other through initial conditions and final solutions. After performing the splitting step, we carry out the time integration with first- and second-order time-differencing methods. These steps give rise to the SIMEX1 and SIMEX2 methods, respectively. A full convergence and stability analysis of our schemes is included. Moreover, we are able to prove that the positivity and the mass conservation of the solution to Fokker-Planck problems are satisfied at the discrete level by the numerical solutions computed with the SIMEX schemes. The second main achievement of this thesis is the theoretical analysis and the numerical solution of optimal control problems governed by Fokker-Planck models. The field of optimal control deals with finding control functions in such a way that given cost functionals are minimized. Our framework aims at the minimization of the difference between a known sequence of values and the first moment of a jump-diffusion process; therefore, this formulation can also be considered as a parameter estimation problem for stochastic processes. Two cases are discussed, in which the form of the cost functional is continuous-in-time and discrete-in-time, respectively. The control variable enters the state equation as a coefficient of the Fokker-Planck partial integro-differential operator. We also include in the cost functional a $L^1$-penalization term, which enhances the sparsity of the solution. Therefore, the resulting optimization problem is nonconvex and nonsmooth. We derive the first-order optimality systems satisfied by the optimal solution. The computation of the optimal solution is carried out by means of proximal iterative schemes in an infinite-dimensional framework. N2 - Die vorliegende Arbeit beschäftigt sich mit der theoretischen und numerischen Analyse von Optimalsteuerungsproblemen, deren Nebenbedingungen die Fokker-Planck-Gleichungen von Sprung-Diffusions-Prozessen sind. Unsere Strategie baut auf der Formulierung eines deterministischen Problems auf, um einen stochastischen Prozess zu steuern. Der Ausgangspunkt ist, die Wahrscheinlichkeitsdichtefunktion des Prozesses zu betrachten, deren zeitliche Entwicklung durch die Fokker-Planck-Gleichung modelliert wird. Dieser Ansatz ist vorteilhaft, da er es ermöglicht, den gesamten Bereich des Prozesses durch die Wirkung der Steuerung zu beeinflussen. Zuerst beschäftigen wir uns mit Sprung-Diffusions-Prozessen. Wir definieren Ausgangswertprobleme, die durch stochastische Differentialgleichungen beschrieben werden, und präsentieren Ergebnisse zur Existenz und Eindeutigkeit ihrer Lösungen. Danach diskutieren wir, wie numerische Lösungen stochastischer Probleme berechnet werden, wobei wir uns auf die Euler-Maruyama-Methode konzentrieren. Wir wenden unsere Aufmerksamkeit auf Sprung-Diffusions-Modelle mit zeit- und raumabhängigen Koeffizienten und Sprüngen, die durch einen zusammengesetzten Poisson-Prozess modelliert sind. Wir leiten die zugehörigen Fokker-Planck-Glei-chungen her, die die Form von partiellen Integro-Differentialgleichungen haben. Ihr Differentialterm wird durch einen parabolischen Operator beschrieben, während der nichtlokale Integraloperator Spr\"{u}nge modelliert. Die Ableitung wird auf zwei unterschiedlichen Arten ausgef\"{u}hrt, je nachdem, ob wir einen Prozess mit unbegrenztem oder beschränktem Bereich betrachten. In dem zweiten Fall muss das Verhalten des Prozesses in der Nähe der Grenzen spezifiziert werden; in dieser Arbeit setzen wir reflektierende Grenzen. Die Fokker-Planck-Gleichung, zusammen mit einem Anfangswert und geeigneten Randbedingungen, erzeugt das Fokker-Planck-Problem. Die Lösbarkeit dieses Pro-blems in geeigneten Funktionenräumen und die Eigenschaften dessen Lösung werden diskutiert, nämlich die Positivität und die Wahrscheinlichkeitsmassenerhaltung. Da analytische Lösungen von Fokker-Planck-Problemen oft nicht verfügbar sind, m\"{u}ssen numerische Methoden verwendet werden. Die erste bemerkenswerte Leistung dieser Arbeit ist die Definition und Analyse von konservativen numerischen Verfahren, die Fokker-Planck-Probleme lösen. Unsere SIMEX1 und SIMEX2 (Splitting-Implizit-Explizit) Schemen basieren auf der Linienmethode. Der Differentialoperator wird durch das Finite-Volumen-Schema von Chang und Cooper diskretisiert, während der Integraloperator durch eine Mittelpunktregel angenähert wird. Dies führt zu einem großen System von gewöhnlichen Differentialgleichungen, das mit der Strang-Marchuk-Splitting-Methode gelöst wird. Diese Technik teilt das ursprüngliche Problem in eine Folge verschiedener Teilprobleme mit einer einfachen Struktur, die getrennt gelöst werden und danach durch deren Anfangswerte miteinander verbunden werden. Dank der Splitting-Methode kann jedes Teilproblem implizit oder explizit gelöst werden. Schließlich wird die numerische Integration des Anfangswertsproblems mit zwei Verfahren durchgeführt, n\"{a}mlich dem Euler-Verfahren und dem Predictor-Corrector-Verfahren. Eine umfassende Konvergenz- und Stabilitätsanalyse unserer Systeme ist enthalten. Darüber hinaus können wir beweisen, dass die Positivität und die Massenerhaltung der Lösung von Fokker-Planck-Problemen auf diskreter Ebene durch die numerischen Lösungen erfüllt werden, die mit den SIMEX-Schemen berechnet wurden. Die zweite bemerkenswerte Leistung dieser Arbeit ist die theoretische Analyse und die numerische Behandlung von Optimalsteuerungsproblemen, deren Nebenbedingungen die Fokker-Planck-Probleme von Sprung-Diffusions-Prozessen sind. Der Bereich der optimalen Steuerung befasst sich mit der Suche nach einer optimalen Funktion, die eine gegebene Zielfunktion minimiert. Wir zielen auf die Minimierung des Unterschieds zwischen einer bekannten Folge von Werten und dem ersten Moment eines Sprung-Diffusions-Prozesses. Auf diese Weise kann unsere Formulierung auch als ein Parameterschätzungsproblem für stochastische Prozesse angesehen werden. Zwei Fälle sind erläutert, in denen die Zielfunktion zeitstetig beziehungsweise zeitdiskret ist. Da die Steuerung ein Koeffizient des Integro-Differentialoperators der Zustandsglei-chung ist und die Zielfunktion einen $ L^1 $-Term beinhaltet, der die dünne Besetzung der Lösung erhöht, ist das Optimierungsproblem nichtkonvex und nichtglatt. Die von der optimalen L\"{o}sung erf\"{u}llten notwendigen Bedingungen werden hergeleitet, die man mit einem System beschreiben kann. Die Berechnung optimaler Lösungen wird mithilfe von Proximal-Methoden durchgeführt, die entsprechend um den unendlichdimensionalen Fall erweitert wurden. KW - Numerical analysis KW - Fokker-Planck KW - optimal control problems KW - jump-diffusion processes KW - Fokker-Planck-Gleichung KW - Optimale Kontrolle Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-145645 ER - TY - JOUR A1 - Gathungu, Duncan Kioi A1 - Borzì, Alfio T1 - Multigrid Solution of an Elliptic Fredholm Partial Integro-Differential Equation with a Hilbert-Schmidt Integral Operator JF - Applied Mathematics N2 - An efficient multigrid finite-differences scheme for solving elliptic Fredholm partial integro-differential equations (PIDE) is discussed. This scheme combines a second-order accurate finite difference discretization of the PIDE problem with a multigrid scheme that includes a fast multilevel integration of the Fredholm operator allowing the fast solution of the PIDE problem. Theoretical estimates of second-order accuracy and results of local Fourier analysis of convergence of the proposed multigrid scheme are presented. Results of numerical experiments validate these estimates and demonstrate optimal computational complexity of the proposed framework. KW - elliptic problems KW - finite differences KW - fredholm operator KW - multigrid schemes KW - numerical analysis Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-158525 VL - 8 IS - 7 ER - TY - JOUR A1 - García-Betancur, Juan-Carlos A1 - Goñi-Moreno, Angel A1 - Horger, Thomas A1 - Schott, Melanie A1 - Sharan, Malvika A1 - Eikmeier, Julian A1 - Wohlmuth, Barbara A1 - Zernecke, Alma A1 - Ohlsen, Knut A1 - Kuttler, Christina A1 - Lopez, Daniel T1 - Cell differentiation defines acute and chronic infection cell types in Staphylococcus aureus JF - eLife N2 - A central question to biology is how pathogenic bacteria initiate acute or chronic infections. Here we describe a genetic program for cell-fate decision in the opportunistic human pathogen Staphylococcus aureus, which generates the phenotypic bifurcation of the cells into two genetically identical but different cell types during the course of an infection. Whereas one cell type promotes the formation of biofilms that contribute to chronic infections, the second type is planktonic and produces the toxins that contribute to acute bacteremia. We identified a bimodal switch in the agr quorum sensing system that antagonistically regulates the differentiation of these two physiologically distinct cell types. We found that extracellular signals affect the behavior of the agr bimodal switch and modify the size of the specialized subpopulations in specific colonization niches. For instance, magnesium-enriched colonization niches causes magnesium binding to S. aureusteichoic acids and increases bacterial cell wall rigidity. This signal triggers a genetic program that ultimately downregulates the agr bimodal switch. Colonization niches with different magnesium concentrations influence the bimodal system activity, which defines a distinct ratio between these subpopulations; this in turn leads to distinct infection outcomes in vitro and in an in vivo murine infection model. Cell differentiation generates physiological heterogeneity in clonal bacterial infections and helps to determine the distinct infection types. KW - Staphylococcus aureus KW - infection KW - cell differentiation KW - pathogenic bacteria Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-170346 VL - 6 IS - e28023 ER - TY - JOUR A1 - Garcia-Larsen, Vanessa A1 - Arthur, Rhonda A1 - Potts, James F. A1 - Howarth, Peter H. A1 - Ahlström, Matti A1 - Haahtela, Tari A1 - Loureiro, Carlos A1 - Bom, Ana Todo A1 - Brożek, Grzegorz A1 - Makowska, Joanna A1 - Kowalski, Marek L. A1 - Thilsing, Trine A1 - Keil, Thomas A1 - Matricardi, Paolo M. A1 - Torén, Kjell A1 - van Zele, Thibaut A1 - Bachert, Claus A1 - Rymarczyk, Barbara A1 - Janson, Christer A1 - Forsberg, Bertil A1 - Niżankowska-Mogilnicka, Ewa A1 - Burney, Peter G. J. T1 - Is fruit and vegetable intake associated with asthma or chronic rhino-sinusitis in European adults? Results from the Global Allergy and Asthma Network of Excellence (GA\(^2\)LEN) Survey JF - Clinical and Translational Allergy N2 - Background: Fruits and vegetables are rich in compounds with proposed antioxidant, anti-allergic and anti-inflammatory properties, which could contribute to reduce the prevalence of asthma and allergic diseases. Objective: We investigated the association between asthma, and chronic rhino-sinusitis (CRS) with intake of fruits and vegetables in European adults. Methods: A stratified random sample was drawn from the Global Allergy and Asthma Network of Excellence (GA\(^2\)LEN) screening survey, in which 55,000 adults aged 15–75 answered a questionnaire on respiratory symptoms. Asthma score (derived from self-reported asthma symptoms) and CRS were the outcomes of interest. Dietary intake of 22 subgroups of fruits and vegetables was ascertained using the internationally validated GA\(^2\)LEN Food Frequency Questionnaire. Adjusted associations were examined with negative binomial and multiple regressions. Simes procedure was used to control for multiple testing. Results: A total of 3206 individuals had valid data on asthma and dietary exposures of interest. 22.8% reported having at least 1 asthma symptom (asthma score ≥1), whilst 19.5% had CRS. After adjustment for potential confounders, asthma score was negatively associated with intake of dried fruits (β-coefficient −2.34; 95% confidence interval [CI] −4.09, −0.59), whilst CRS was statistically negatively associated with total intake of fruits (OR 0.73; 95% CI 0.55, 0.97). Conversely, a positive association was observed between asthma score and alliums vegetables (adjusted β-coefficient 0.23; 95% CI 0.06, 0.40). None of these associations remained statistically significant after controlling for multiple testing. Conclusion and clinical relevance: There was no consistent evidence for an association of asthma or CRS with fruit and vegetable intake in this representative sample of European adults. KW - Fruits KW - Vegetables KW - Asthma KW - Chronic rhino‑sinusitis KW - Adults KW - Europe KW - Meta‑analysis KW - GA\(^2\)LEN Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-180887 VL - 7 ER - TY - THES A1 - Garcia Guerrero, Estefania T1 - Strategies to Obtain Tumor-Reactive Cells for Cancer Immunotherapy by Cell Sorting and Genetic Modifications of T Lymphocytes T1 - Zellsortierung und genetische Modifikation von T-Lymphozyten zur Gewinnung tumorreaktiver Zellen für die Krebsimmuntherapie N2 - Recent advances in the field of cancer immunotherapy have enabled this therapeutic approach to enter the mainstream of modern cancer treatment. In particular, adoptive T cell therapy (ACT) is a potentially powerful immunotherapy approach that relies on the administration of tumor-specific T cells into the patient. There are several strategies to obtain tumor-reactive cytotoxic T lymphocytes (CTLs), which have already been shown to induce remarkable responses in the clinical setting. However, there are concerns and limitations regarding the conventional approaches to obtain tumor-reactive T cells, such as accuracy of the procedure and reproducibility. Therefore, we aimed to develop two approaches to improve the precision and efficacy of tumor-reactive T cells therapy. These two techniques could constitute effective, safe and broadly applicable alternatives to the conventional methods for obtaining tumor-specific CTLs. The first approach of this study is the so called “Doublet Technology”. Here, we demonstrate that peptide-human leukocyte antigen-T cell receptor (pHLA-TCR) interactions that involve immune reactive peptides are stable and strong. Therefore, the CTLs that are bound by their TCR to tumor cells can be selected and isolated through FACS-based cell sorting taking advantage of this stable interaction between the CTLs and the target cells. The CTLs from acute myeloid leukemia (AML) patients obtained with this technique show cytolytic activity against blast cells suggesting a potential clinical use of these CTLs. “Doublet Technology” offers a personalized therapy in which there is no need for a priori knowledge of the exact tumor antigen. The second approach of this study is the Chimeric Antigen Receptor (CAR) Technology. We design several CARs targeting the B-Cell Maturation Antigen (BCMA). BCMA CAR T cells show antigen-specific cytolytic activity, production of cytokines including IFN-γ and IL-2, as well as productive proliferation. Although we confirm the presence of soluble BCMA in serum of multiple myeloma (MM) patients, we demonstrate that the presence of soluble protein does not abrogate the efficacy of BCMA CAR T cells suggesting that BCMA CAR T cells can be used in the clinical setting to treat MM patients. The high antigen specificity of CAR T cells allows efficient tumor cell eradication and makes CAR Technology attractive for broadly applicable therapies. N2 - Durch jüngste Fortschritte auf dem Gebiet der Krebsimmuntherapie konnte dieser therapeutische Ansatz in der Mitte moderner Krebsbehandlungen ankommen. Insbesondere die adoptive T-Zelltherapie (ACT), die auf der Verabreichung tumorspezifischer T-Zellen an den Patienten beruht, stellt einen potentiell schlagkräftigen immuntherapeutischen Ansatz dar. Es existieren bereits verschiedene Strategien um tumorreaktive zytotoxische T-Lymphozyten (CTL) herzustellen, von denen bereits gezeigt wurde, dass sie klinisch bemerkenswerte Antworten hervorrufen. Dennoch gibt es Bedenken und Grenzen bezüglich dieser konventionellen Ansätze zur Herstellung tumorreaktiver T-Zellen, wie zum Beispiel die Genauigkeit und Reproduzierbarkeit des Verfahrens. Daher arbeiteten wir an der Entwicklung zweier Ansätze um die Präzision und Effizienz der tumorreaktiven T-Zelltherapie zu verbessern. Diese beiden Techniken könnten effektive, sichere und breit anwendbare Alternativen zu den konventionellen Methoden der tumorspezifischen CTL-Gewinnung darstellen. Der erste Ansatz dieser Studie wird als „Doublet Technology“ bezeichnet. Hierbei zeigen wir, dass die Interaktionen zwischen Peptid/MHC-Komplex und T-Zellrezeptor (pHLA-TCR), die immunreaktive Peptide involvieren, stabil und solide sind. Außerdem zeigen wir, dass CTLs, die über ihren TCR an Tumorzellen gebunden sind, selektioniert und durch FACS-basierte Zellsortierung isoliert werden können. Hierbei wird die Stabilität der Interaktion von CTLs und Zielzellen genutzt. Die CTLs von Patienten mit Akuter Myeloischer Leukämie (AML), die auf diese Weise gewonnen werden, zeigen zytolytische Aktivität gegenüber Blasten, was auf einen potentiellen klinischen Nutzen dieser CTLs hinweisen könnte. Die „Doublet Technology“ bietet eine personalisierte Therapie, die kein vorheriges Wissen über ein exaktes Tumorantigen erfordert. Der zweite Ansatz dieser Studie ist die Chimere Antigenrezeptor (CAR) Technologie. Wir entwickeln verschiedene CARs gegen das B-Zellmaturationsantigen (BCMA). BCMA-CAR T-Zellen zeigen antigenspezifische zytolytische Aktivität, Produktion der Zytokine IFN-γ und IL-2 sowie produktive Proliferation. Obwohl wir bestätigen, dass lösliches BCMA im Serum von Multiplen Myelompatienten zu finden ist, zeigen wir auch, dass dieses lösliche Protein nicht die Effizienz von BCMA-CAR T-Zellen beeinträchtigt und somit BCMA-CAR T-Zellen zur Behandlung von Multiplen Myelompatienten klinisch genutzt werden können. Die hohe Antigenspezifität der CAR-T-Zellen erlaubt eine effiziente Vernichtung von Tumorzellen und macht die CAR-Technologie attraktiv für breit einsetzbare Therapien. KW - Immunotherapy KW - Cancer KW - Strategies to Obtain Tumor-Reactive Cells Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-150547 ER - TY - THES A1 - Gao, Shiqiang T1 - Characterizing new photoreceptors to expand the Optogenetic toolbox T1 - Charakterisierung neuer Photorezeptoren zur Erweiterung der Optogenetik N2 - Optogenetics is a method to control the cell activity with light by expression of a natural or engineered photoreceptor via genetic modification technology. Optogenetics early success came with the light-gated cation channel "Channelrhodopsin-2" in neurons and expanded from neuroscience to other research fields such as cardiac research and cell signaling, also due to the enrichment by new photoreceptors. In this study, I focus on searching and characterizing new photoreceptors to expand the optogenetic tool box. In this work I characterize three newly discovered microbial rhodopsins and some engineered mutants of them. The first rhodopsin is a proton pump from the diatom Fragilariopsis cylindrus, Fragilariopsis Rhodopsin or abbreviated: FR. I cloned the full-length FR and proved it to be a light-activated proton pump with high efficacy in comparison to Bacteriorhodopsin (BR). During this study, I also developed a new method to improve the plasma membrane targeting of several microbial rhodopsins. I also obtained a FR mutant (channel-like FR or chFR) which behaves like a light-gated proton channel. FR can be used for optogenetic hyperpolarization or alkalization of a cell while the chFR could be used for depolarization or lowering of the cellular pH. The induction of FR expression under iron-limited conditions in the diatom indicated an alternative energy generation mechanism of F. cylindrus when iron-containing enzymes are scarce. I then characterized a new microbial rhodopsin with novel light-regulated Guanylyl Cyclase (GC) activity. This rhodopsin guanylyl cyclase from the fungus Blastocladiella emersonii (B.e. CyclaseOpsin or BeCyclOp) has been proven by me to be an efficient light-gated GC with high specificity and fast kinetics. BeCyclOp also has a novel structure with eight transmembrane helices, containing a long cytosolic N-terminus which participates in the tight regulation of the GC activity. In collaboration with Prof. Alexander Gottschalk (Univ. Frankfurt/M.), BeCyclOp has been tested in muscle cells and sensory neurons of Caenorhabditis elegans and proven to be a powerful optogenetic tool in a living animal. I also generated a BeCyclOp mutant with enhanced light sensitivity. Already more than ten years ago, guanylyl cyclase rhodopsins were suggested to exist in Chlamydomonas reinhardtii by analyzing genomic sequence data. But until now no functional proof existed. By further cloning and sequencing I discovered such a rhodopsin with light-regulated guanylyl cyclase activity. This functional Cyclaseopsin (COP6c) is quite different to BeCyclOp, as it was proven to be a light-inhibited GC. Cop6c is much larger than BeCyclOp with a His-Kinase and a response regulator domain between the rhodopsin and the cyclase domain. I also introduced a new strategy for generating optogenetic tools by fusing the photoactivated adenylyl cyclase bPAC to two different CNG channels. These new tools function via light-gated cAMP production and subsequent CNG channel activation. These tools combined the properties of bPAC (highly sensitive to blue light) and CNG channels (high single-channel conductance and high Ca2+ permeability), as demonstrated by expression in Xenopus oocytes. As a further benefit the fusing of bPAC to CNG channels leads to a bPAC with a more than tenfold reduced dark activity which is a valuable improvement for bPAC itself as an optogenetic tool. N2 - Als Optogenetik wird die Technik bezeichnet, durch genetische Veränderung Photorezeptoren in Zellen einzubringen, um die Zellaktivität mit Licht zu steuern. Frühe Erfolge der Optogenetik wurden mit dem Licht-gesteuerten Kationenkanal "Channelrhodopsin-2" in Neuronen von lebenden Tieren erzielt. Die Anwendung erweiterte sich von den Neurowissenschaften zu anderen Forschungsfeldern, wie Herzforschung und Zellbiologie, auch durch die Bereicherung mit neuen Photorezeptoren. Hier konzentriere ich mich auf die Suche und Charakterisierung neuer Photorezeptoren. In dieser Arbeit werden drei neu entdeckte, natürliche mikrobielle Rhodopsine, sowie ausgewählte Mutanten, charakterisiert. Das erste Rhodopsin ist eine Protonenpumpe aus der Kieselalge (Diatomee) Fragilariopsis cylindrus, Fragilariopsis-Rhodopsin, abgekürzt FR. Ich klonierte FR und bewies, dass FR eine Licht-aktivierte Protonenpumpe mit hoher Wirksamkeit ist. In dieser Studie zeige ich auch eine Methode, um die Plasmamembran-Lokalisation von FR und mehreren anderen Rhodopsinen zu verbessern. Ich identifizierte eine FR-Mutante (chFR), die sich wie ein Licht-gesteuerter Protonenkanal verhält. FR kann für die Licht-gesteuerte Hyperpolarisation oder Alkalisierung der Zelle verwendet werden, während chFR möglicherweise verwendet werden könnte, um den zellulären pH Licht-gesteuert abzusenken. Die Induktion der FR-Expression unter Eisenmangel-Bedingungen legt einen neuen Energieerzeugungsmechanismus von F. cylindrus nahe, wenn Eisen-haltige Enzyme in den Chloroplasten fehlen. Ich habe dann ein neues mikrobielles Rhodopsin mit Licht-geregelter Guanylylcyclase (GC) Aktivität untersucht. Für dieses Cyclaseopsin aus dem Pilz Blastocladiella emersonii (BeCyclOp) konnte ich zeigen, dass es sich um eine effiziente lichtgesteuerte GC mit hoher Spezifität und schneller Kinetik handelt. BeCyclOp hat eine für ein Opsin neuartige Struktur mit acht Transmembranhelices. Für den langen cytosolischen N-Terminus zeigte ich eine Beteiligung an der Regulierung der GC-Aktivität. BeCyclOp wurde im Labor von Prof. A. Gottschalk (Univ. Frankfurt/M.) in den Muskelzellen und sensorischen Neuronen von Caenorhabditis elegans getestet und erwies sich als ein leistungsfähiges Werkzeug in optogenetisch veränderten, lebenden Tieren. Ich habe dann auch eine BeCyclOp Mutante mit verbesserter Lichtempfindlichkeit hergestellt. Bereits vor über zehn Jahren wurden anhand genomischer Daten Guanylylcyclase-Rhodopsine in Chlamydomonas reinhardtii postuliert, konnten aber funktionell bisher nicht nachgewiesen werden. Durch Klonieren von verschiedenen Chlamydomonas reinhardtii Stämmen gelang es mir, solch ein Opsin (Cop6c) zu entdecken, dessen Guanylylcyclase-Aktivität eindeutig Licht-reguliert ist. COP6c ist ganz anders als BeCyclOp, nicht nur weil die GC-Aktivität durch Licht inhibiert wird. Außerdem ist Cop6c ein viel größeres Protein mit einer zusätzlichen His-Kinase-, sowie einer Transducer-Domäne zwischen der Rhodopsin- und der Cyclase-Domäne. Schlussendlich zeige ich auch eine neue Strategie zur Erzeugung von optogenetischen Werkzeugen durch Fusion der Licht-aktivierten Adenylyl-Cyclase (AC) bPAC mit CNG-Kanälen. Diese neuen "Werkzeuge" funktionieren über Licht-gesteuerte cAMP-Produktion und die anschließende Aktivierung eines cAMP-sensitiven Kationen-(CNG-) Kanals. Hierbei werden die positiven Eigenschaften von bPAC (sehr empfindlich auf blaues Licht) und CNG-Kanälen (hohe Leitfähigkeit bei hoher Ca2+-Durchlässigkeit) kombiniert. Darüber hinaus konnte ich demonstrieren, dass die Fusion der bPAC an den CNG-Kanal zu einer bPAC mit stark reduzierter AC-Aktivität im Dunkeln führte, was allein schon eine gute Verbesserung der bPAC als optogenetische Werkzeug ist. KW - Photorezeptor KW - Optogenetik KW - Optogenetics KW - photoreceptors KW - microbial rhodopsin KW - Characterizing New Photoreceptors to Expand the Optogenetic Toolbox KW - Guanylyl Cyclase KW - proton pump Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-112941 ER - TY - THES A1 - Gallego Valencia, Juan Pablo T1 - On Runge-Kutta discontinuous Galerkin methods for compressible Euler equations and the ideal magneto-hydrodynamical model T1 - Runge-Kutta Discontinuous-Galerkin Verfahren für die kompressiblen Euler Gleichungen und das ideale magnetohydrodynamische Modell N2 - An explicit Runge-Kutta discontinuous Galerkin (RKDG) method is used to device numerical schemes for both the compressible Euler equations of gas dynamics and the ideal magneto- hydrodynamical (MHD) model. These systems of conservation laws are known to have discontinuous solutions. Discontinuities are the source of spurious oscillations in the solution profile of the numerical approximation, when a high order accurate numerical method is used. Different techniques are reviewed in order to control spurious oscillations. A shock detection technique is shown to be useful in order to determine the regions where the spurious oscillations appear such that a Limiter can be used to eliminate these numeric artifacts. To guarantee the positivity of specific variables like the density and the pressure, a positivity preserving limiter is used. Furthermore, a numerical flux, proven to preserve the entropy stability of the semi-discrete DG scheme for the MHD system is used. Finally, the numerical schemes are implemented using the deal.II C++ libraries in the dflo code. The solution of common test cases show the capability of the method. N2 - Ein explizite Runge-Kutta discontinous Galerkin (RKDG) Verfahren wird angewendet, um numerische Diskretisierungen, sowohl für die kompressiblen Eulergleichungen der Gasdynamik, als auch für die idealen Magnetohydrodynamik (MHD) Gleichungen zu entwickeln. Es ist bekannt, dass diese System von Erhaltungsgleichungen unstetige Lösungen besitzen. Unstetigkeiten sind die Quelle von störenden Oszillationen im Lösungsprofil der numerischen Näherung, wenn ein numerisches Verfahren von hoher Ordnung verwendet wird. Verschiedene Techniken werden miteinander verglichen um störende Oszillationen zu kontrollieren, die bei der Approximation von Unstetigkeiten in der Lösung auftreten. Ein Verfahren zur Lokalisierung von Schockwellen wird vorgestellt und es wird gezeigt, dass dieses Verfahren nützlich ist um Regionen, in denen störende Oszillationen auftreten, zu bestimmen, so dass ein Limiter verwendet werden kann um diese numerischen Artefakte zu eliminieren. Um die Positivität spezieller Variablen, wie die Dichte und den Druck, zu bewahren, wird ein spezieller „positivitätserhaltender“ Limiter verwendet. Des Weiteren wird ein numerischer Fluss, für den bewiesenermaßen das semi-diskrete DG Verfahren für das MHD System Entropie-Stabil ist, verwendet. Abschließend werden die numerischen Verfahren unter Verwendung der deal.II C++ Bibliotheken im dflo code implementiert. Simulationen bekannter Testbeispiele zeigen das Potential dieses numerischen Verfahrens. KW - explicit discontinuous Galerkin KW - conservation laws KW - numerical methods KW - Euler equations KW - MHD KW - Eulersche Differentialgleichung KW - Galerkin-Methode KW - Numerisches Verfahren Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-148874 ER - TY - THES A1 - Fuchs, Benjamin Felix T1 - Effects of timing and herbivory on a grass-endophyte association and its trophic interactions T1 - Auswirkungen von Timing und Herbivorie auf eine Gras-Endophyten Assoziation und ihre trophischen Interaktionen N2 - I.) Plant associated microorganisms can affect the plant`s interaction with herbivores and higher trophic levels. For instance, endophytic fungi infecting aerial plant parts of grass species produce bioactive alkaloids that can negatively affect species from higher trophic levels, indicating a defensive mutualism between the grass and the endophyte. However, beneficial insects can also be negatively affected by the endophyte, which might question the mutualistic effect of endophytic fungi. On the other hand, grass-endophytes are affected by environmental conditions and species interactions. Grazing can increase endophyte frequencies in natural habitats. Furthermore, endophyte mediated effects on herbivores are most pronounced during warm summers following rainy springs. In this study, we investigated whether endophyte derived alkaloids cascade up a food chain (chapter II) and whether their concentrations depend on plant age and season (chapter III). Further we analysed, whether altered herbivore phenology affects the endophytic fungus (chapter IV) and whether endophyte derived alkaloid production is induced by different herbivore species (chapter V). II.) In our first experimental study we analysed whether grass-endophyte derived alkaloids decreased the performance of two ladybird species feeding on aphids exclusively reared on endophyte infected grass (6 weeks young grass). Further, we screened species from three trophic levels (grass, herbivores and aphid predators) for their alkaloid content using two year old infected grass as diet for herbivores. We established an UPLC-MS method to detect and quantify the amount of the endophyte derived alkaloids peramine and lolitrem B extracted from the organic plant and insect material. Performance parameters of ladybirds revealed little differences between ladybirds fed on aphids reared on endophyte infected and non-infected grass, which probably resulted from low alkaloid concentrations in the young (6-weeks old) endophyte infected grass used in this part of the study. Alkaloid quantification of the two year old endophyte infected grass, herbivores and aphid predators revealed similar concentrations between grass and aphids, while aphid predators contained approximately half of that amount which still exceeded the bioactive threshold. We conclude that alkaloids produced by grass-endophytes cascade up the food chain and are responsible for fitness disadvantages of higher trophic levels. III.) In the second study we investigated the impact of plant age and seasonal timing on grass-endophyte growth and alkaloid production. Plants were sown in April of 2013 and sampled monthly over 30 consecutive months. Endophyte growth was quantified with real-time PCR (qPCR) and alkaloid concentrations with UPLC-MS. We showed that alkaloid concentrations and fungal growth followed a seasonal rhythmicity and that alkaloid concentrations increased with plant age. Alkaloid concentrations peak during summer, when also herbivore abundances are high. Consequently, we conclude that plant age and season contribute to the toxicity of endophytes on grass herbivores IV.) In the third study we simulated earlier spring arrival of aphids by enhancing aphid abundance on endophyte infected and endophyte-free grass in spring and analysed responses across three trophic levels. Enhanced aphid abundance in spring caused higher aphid abundances during the study period. Predators stayed unaffected by increased herbivore abundances; however they did level aphid numbers within two weeks after arrival on the plants, independent of aphid abundance. Grass-endophyte showed a time delayed growth, two weeks after aphid abundance peak and after predators already controlled aphid infestations on the plants. We conclude that phenology shifts of herbivorous insects can affect multi-trophic interactions leading to desynchronizations between phenologies of interacting species and mismatches in food-webs. V.) In the fourth study we analysed whether herbivores induce endophyte growth and alkaloid production and whether different types of herbivores induce specific alkaloid production. We applied three different herbivore treatments on endophyte infected grass over 18 weeks. Locust herbivory increased the insect deterring alkaloid peramine and clipping of plants (simulation of grazing livestock) increased the vertebrate toxic alkaloid lolitrem B. Aphid herbivory did not affect endophyte derived alkaloid concentrations. Endophyte responses to herbivory were species specific which indicates a primarily plant protecting role of alkaloid synthesis in endophyte infected plants and a close chemical crosstalk between interacting species. VI.) In summary, we showed that endophyte derived alkaloids affect higher trophic levels and that alkaloid concentrations in the plant depend on prevalent herbivore species, plant age and seasonal timing. Our results indicate a close chemical crosstalk between the host plant and the endophytic fungus which is susceptible to environmental changes altering the endophyte`s alkaloid production in plants. We gained insights into the grass-endophyte symbiosis in ecological contexts and conclude that several factors determine the herbivore toxic potential of endophytic fungi and thereby their plant mutualistic or parasitic character. Future studies should investigate the mechanisms behind the herbivore induced alkaloid concentration increase, shown in this thesis, especially whether plant signals mediate the endophyte response. Furthermore it would be interesting to study the induction of indirect endophyte mediated defence and how it affects multi-trophic level interactions. N2 - I.) Mit Pflanzen assoziierte Mikroorganismen können die Interaktionen von Pflanzen mit Herbivoren und höheren trophischen Ebenen beeinflussen. Endophytische Pilze, die oberirdische Pflanzenteile von Gräsern infizieren, produzieren bioaktive Alkaloide, die negative Effekte auf pflanzenfressende Organismen haben können. Blattlaus parasitierende und räuberische Insekten hatten ebenso Fitnessnachteile, wenn sie mit Blattläusen gefüttert wurden, die auf Epichloë festucae var. lolii infiziertem Lolium perenne gezüchtet wurden. Umwelteinflüsse und Interaktionen zu anderen Arten beeinträchtigen das Wachstum und die Alkaloid Produktion von Endophyten. Die Häufigkeit von Endophyten in natürlichen Habitaten können von Herbivorie beeinflusst werden. Weiterhin sind Endophyten verursachte Effekte auf Pflanzenfresser am häufigsten in warmen Sommermonaten nach regenreichen Frühlingsmonaten. In dieser Studie analysieren wir, ob Endophyten produzierte Alkaloide in einer Nahrungskette aufsteigen und in höheren trophischen Ebenen gefunden werden (Kapitel II) und ob ihre Konzentrationen von Pflanzenalter und Saison abhängig sind (Kapitel III). Weiterhin analysieren wir, ob veränderte Phänologie von herbivoren Insekten den endophytischen Pilz beeinflussen (Kapitel IV) und ob Alkaloid Produktion von verschiedenen Pflanzenfressern induziert wird (Kapitel V). II.) In der ersten Studie analysierten wir, ob Alkaloide, die von Gras Endophyten produziert werden, die Fitness von zwei Marienkäfer Arten verringern, wenn sie mit Blattläusen gefüttert werden, die ausschließlich auf Endophyten infiziertem Gras (6 Wochen alt) gezüchtet wurden. Weiterhin analysierten wir Arten aus drei trophischen Ebenen (Gras, Herbivore, Blattlaus Prädatoren) auf ihren Alkaloid Gehalt mit zwei Jahre altem Endophyten infizierten Gras als Futter für pflanzenfressende Insekten. Wir etablierten eine UPLC-MS Methode, um die Endophyten produzierten Alkaloide Peramin und Lolitrem B zu detektieren und zu quantifizieren, nach der Extraktion aus organischem Material von Pflanzen und Insekten. Fitness von Marienkäfern zeigte nur geringe Unterschiede zwischen Marienkäfern, denen Blattläuse gefüttert wurden, die ausschließlich auf Endophyten infizierten Grass oder nicht infiziertem Grass gezüchtet wurden. Die Ursache dafür, ist wahrscheinlich eine zu geringe Alkaloid Konzentration in dem jungen, Endophyten-infizierten Grass (6 Wochen alt), das für diesen Teil der Studie verwendet wurde. Die Quantifizierung der Alkaloide von zwei Jahre altem Endophyten infiziertem Gras, Herbivoren und Prädatoren zeigte ähnliche Konzentrationen zwischen Gras und Blattläusen, wohingegen Prädatoren etwa eine halb so hohe Alkaloid Konzentration enthielten, die aber dennoch den Grenzwert für biologische Wirksamkeit überschritt. Wir folgern, dass Endophyten produzierte Alkaloide innerhalb der Nahrungskette weitergegeben werden und somit verantwortlich für Nachteile auf die Fitness höherer trophischer Ebenen sind. III.) In der zweiten Studie untersuchten wir den Einfluss von Pflanzenalter und Saison auf Wachstum des Endophyten und dessen Alkaloid Produktion. Pflanzen wurden im April 2013 gesät und über einen Zeitraum von 30 Monaten monatlich beprobt. Endophyten Wachstum wurde mittels real-time PCR (qPCR) und Alkaloide mittels UPLC-MS quantifiziert. Wir zeigten, dass Pilzwachstum und Alkaloid Produktion einer saisonalen Rhythmik folgen und Alkaloid Konzentrationen zudem mit dem Pflanzenalter ansteigen. Demzufolge tragen Pflanzenalter und Saison zur Toxizität von endophytischen Pilzen bei. Alkaloid Konzentrationen sind am höchsten im Sommer, wenn auch die Abundanzen von Herbivoren besonders hoch sind. IV.) In der dritten Studie simulierten wir frühzeitiges Blattlausvorkommen, indem wir Blattlausabundanzen auf Endophyten freien und infizierten Graspflanzen im Frühling erhöhten und die Reaktionen auf drei trophischen Ebenen analysierten. Top-Down Kontrolle durch Blattlausprädatoren wurde nicht von erhöhten Blattlausabundanzen beeinflusst, aber innerhalb von zwei Wochen nach ihrem Erscheinen, reduzierten Prädatoren die Anzahl an Blattläusen erheblich, unabhängig von den Blattlausabundanzen. Bottom-Up Kontrolle durch erhöhtes Wachstum der Grasendophyten war zeitlich verzögert, zwei Wochen nachdem Blattlausabundanzen ihre Maxima erreichten und bereits durch Prädatoren stark dezimiert waren. Daraus schlussfolgern wir, dass Phänologieverschiebungen von pflanzenfressenden Insekten multi-trophische Interaktionen beeinflussen und zu einer Desynchronisierung der Phänologien von interagierenden Arten und somit unausgeglichenen Beziehungen in Nahrungsnetzen führen können. V.) In der vierten Studie analysierten wir, ob Herbivore Insekten das Wachstum und die Alkaloid Produktion von endophytischen Pilzen induzieren und ob verschiedene Arten von Herbivorie die Produktion spezifischer Alkaloide induzieren. Wir applizierten drei verschieden Arten von Pflanzenfraß Treatments an Endophyten infiziertem Grass über einen Zeitraum von 18 Wochen und fanden heraus, dass Heuschrecken eine Erhöhung der Konzentration des insektenwirksamen Alkaloids induzieren und Schnitt der Pflanze (Simulierung von Weidevieh) eine Erhöhung des Vertebraten toxischen Alkaloids Lolitrem B. Herbivorie durch Blattläuse hatte keinen Einfluss auf Konzentrationen von Endophyten produzierten Alkaloiden. Reaktionen von endophytischen Pilzen auf Herbivorie sind demnach artspezifisch, was darauf hinweist, dass Alkaloide vorrangig zu Pflanzenschutz Zwecken gegen Fraßfeinde produziert werden. VI.) Zusammenfassend zeigt die vorliegende Arbeit, dass die von endophytischen Pilzen produzierten Alkaloide, Organismen höherer trophischer Ebenen beeinflussen können und dass Alkaloid Konzentrationen im Wirtsgras von Herbivorietyp, Pflanzenalter und saisonbedingten Umwelteinflüssen abhängig sind. Schlussendlich deuten unsere Ergebnisse auf eine enge chemische Verständigung zwischen Wirtsgras und endophytischem Pilz hin, empfindlich gegenüber Umweltveränderungen, die folglich eine Veränderung in der Konzentration von Endophyten produzierten Alkaloiden auslösen. Zukünftige Studien sollten die Mechanismen hinter induziertem Anstieg von Alkaloid Konzentrationen analysieren, speziell, ob Pflanzensignale die Reaktion des Endophyten auf Herbivorie vermitteln. Weiterhin könnte eine Endophyten-vermittelte Induktion von indirekter Pflanzenabwehr zur Interaktion zwischen mehreren trophischen Ebenen beitragen. KW - fungal endophytes of grasses KW - plant defense KW - alkaloids KW - endophyte KW - grass KW - symbiosis Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-141465 ER - TY - JOUR A1 - Fröhlich, M. A1 - Pinart, M. A1 - Keller, T. A1 - Reich, A. A1 - Cabieses, B. A1 - Hohmann, C. A1 - Postma, D. S. A1 - Bousquet, J. A1 - Antó, J. M. A1 - Keil, T. A1 - Roll, S. T1 - Is there a sex-shift in prevalence of allergic rhinitis and comorbid asthma from childhood to adulthood? A meta-analysis JF - Clinical and Translational Allergy N2 - Background: Allergic rhinitis and asthma as single entities affect more boys than girls in childhood but more females in adulthood. However, it is unclear if this prevalence sex-shift also occurs in allergic rhinitis and concurrent asthma. Thus, our aim was to compare sex-specifc differences in the prevalence of coexisting allergic rhinitis and asthma in childhood, adolescence and adulthood. Methods: Post-hoc analysis of systematic review with meta-analysis concerning sex-specific prevalence of allergic rhinitis. Using random-effects meta-analysis, we assessed male–female ratios for coexisting allergic rhinitis and asthma in children (0–10 years), adolescents (11–17) and adults (> 17). Electronic searches were performed using MEDLINE and EMBASE for the time period 2000–2014. We included population-based observational studies, reporting coexisting allergic rhinitis and asthma as outcome stratifed by sex. We excluded non-original or non-population-based studies, studies with only male or female participants or selective patient collectives. Results: From a total of 6539 citations, 10 studies with a total of 93,483 participants met the inclusion criteria. The male–female ratios (95% CI) for coexisting allergic rhinitis and asthma were 1.65 (1.52; 1.78) in children (N = 6 studies), 0.61 (0.51; 0.72) in adolescents (N = 2) and 1.03 (0.79; 1.35) in adults (N = 2). Male–female ratios for allergic rhinitis only were 1.25 (1.19; 1.32, N = 5) in children, 0.80 (0.71; 0.89, N = 2) in adolescents and 0.98 (0.74; 1.30, N = 2) in adults, respectively. Conclusions: The prevalence of coexisting allergic rhinitis and asthma shows a clear male predominance in childhood and seems to switch to a female predominance in adolescents. This switch was less pronounced for allergic rhinitis only. KW - Medicine KW - Allergic rhinitis KW - Asthma KW - Multimorbidity KW - Prevalence KW - Systematic review Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-172508 VL - 7 ER - TY - JOUR A1 - Frank, Erik Thomas A1 - Schmitt, Thomas A1 - Hovestadt, Thomas A1 - Mitesser, Oliver A1 - Stiegler, Jonas A1 - Linsenmair, Karl Eduard T1 - Saving the injured: Rescue behavior in the termite-hunting ant Megaponera analis JF - Science Advances N2 - Predators of highly defensive prey likely develop cost-reducing adaptations. The ant Megaponera analis is a specialized termite predator, solely raiding termites of the subfamily Macrotermitinae (in this study, mostly colonies of Pseudocanthotermes sp.) at their foraging sites. The evolutionary arms race between termites and ants led to various defensive mechanisms in termites (for example, a caste specialized in fighting predators). Because M. analis incurs high injury/mortality risks when preying on termites, some risk-mitigating adaptations seem likely to have evolved. We show that a unique rescue behavior in M. analis, consisting of injured nestmates being carried back to the nest, reduces combat mortality. After a fight, injured ants are carried back by their nestmates; these ants have usually lost an extremity or have termites clinging to them and are able to recover within the nest. Injured ants that are forced experimentally to return without help, die in 32% of the cases. Behavioral experiments show that two compounds, dimethyl disulfide and dimethyl trisulfide, present in the mandibular gland reservoirs, trigger the rescue behavior. A model accounting for this rescue behavior identifies the drivers favoring its evolution and estimates that rescuing enables maintenance of a 28.7% larger colony size. Our results are the first to explore experimentally the adaptive value of this form of rescue behavior focused on injured nestmates in social insects and help us to identify evolutionary drivers responsible for this type of behavior to evolve in animals. KW - Megaponera analis KW - rescue behavior Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-157933 VL - 3 IS - 4 ER - TY - JOUR A1 - Forkuor, Gerald A1 - Hounkpatin, Ozias K.L. A1 - Welp, Gerhard A1 - Thiel, Michael T1 - High resolution mapping of soil properties using remote sensing variables in south-western Burkina Faso: a comparison of machine learning and multiple linear regression models JF - PLOS One N2 - Accurate and detailed spatial soil information is essential for environmental modelling, risk assessment and decision making. The use of Remote Sensing data as secondary sources of information in digital soil mapping has been found to be cost effective and less time consuming compared to traditional soil mapping approaches. But the potentials of Remote Sensing data in improving knowledge of local scale soil information in West Africa have not been fully explored. This study investigated the use of high spatial resolution satellite data (RapidEye and Landsat), terrain/climatic data and laboratory analysed soil samples to map the spatial distribution of six soil properties–sand, silt, clay, cation exchange capacity (CEC), soil organic carbon (SOC) and nitrogen–in a 580 km2 agricultural watershed in south-western Burkina Faso. Four statistical prediction models–multiple linear regression (MLR), random forest regression (RFR), support vector machine (SVM), stochastic gradient boosting (SGB)–were tested and compared. Internal validation was conducted by cross validation while the predictions were validated against an independent set of soil samples considering the modelling area and an extrapolation area. Model performance statistics revealed that the machine learning techniques performed marginally better than the MLR, with the RFR providing in most cases the highest accuracy. The inability of MLR to handle non-linear relationships between dependent and independent variables was found to be a limitation in accurately predicting soil properties at unsampled locations. Satellite data acquired during ploughing or early crop development stages (e.g. May, June) were found to be the most important spectral predictors while elevation, temperature and precipitation came up as prominent terrain/climatic variables in predicting soil properties. The results further showed that shortwave infrared and near infrared channels of Landsat8 as well as soil specific indices of redness, coloration and saturation were prominent predictors in digital soil mapping. Considering the increased availability of freely available Remote Sensing data (e.g. Landsat, SRTM, Sentinels), soil information at local and regional scales in data poor regions such as West Africa can be improved with relatively little financial and human resources. KW - Agricultural soil science KW - Forecasting KW - Machine learning KW - Support vector machines KW - Paleopedology KW - Trees KW - Clay mineralogy KW - Remote sensing KW - South-western Burkina Faso Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-180978 VL - 12 IS - 1 ER - TY - JOUR A1 - Foerster, Anna A1 - Pfister, Roland A1 - Reuss, Heiko A1 - Kunde, Wilfried T1 - Commentary: Feeling the Conflict: The Crucial Role of Conflict Experience in Adaptation JF - Frontiers in Psychology N2 - A commentary on: Feeling the Conflict: The Crucial Role of Conflict Experience in Adaptationby Desender, K., Van Opstal, F., and Van den Bussche, E. (2014). Psychol. Sci. 25, 675–683. doi:10.1177/0956797613511468 Conflict adaptation in masked priming has recently been proposed to rely not on successful conflictresolution but rather on conflict experience (Desender et al., 2014). We re-assessed this proposal ina direct replication and also tested a potential confound due toconflict strength. The data supported this alternative view, but also failed to replicate basic conflict adaptation effects of the original studydespite considerable power. KW - conflict adaptation KW - conflict experience KW - conflict strength KW - cognitive conflict KW - cognitive control Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-190032 SN - 1664-1078 VL - 8 IS - 1405 ER - TY - THES A1 - Flohr, Elena Leonie Ruth T1 - The Scents of Interpersonality - On the Influence of Smells on the Evaluation and Processing of Social Stimuli T1 - Die Düfte der Zwischenmenschlichkeit - Über den Einfluss von Gerüchen auf die Bewertung und Verarbeitung von sozialen Reizen N2 - In daily life, olfactory stimuli are potential generators of affective states, but also have a strong influence on social interaction. Pleasant odors have been shown to increase perceived attractiveness and pro-social behavior, whereas unpleasant body odors are often associated with negative personality traits. Since both pleasant odors and positive affective state facilitate pro-social behavior, it is conceivable that the influence of the odors on social interaction is mediated by the induced affective state elicited by the odor itself. The present thesis aims at exploring the impact of hedonic, i.e., pleasant or unpleasant, odors on the processing and evaluation of social stimuli as assessed by verbal, physiological, and behavioral indices. First, I investigate the effects of initially neutral odors which gained threatening value through an aversive conditioning procedure on social stimuli (Study 1). Second, I study the influence of naturally hedonic odors on social interaction. Third, this thesis aims at disentangling differences in the effects of an odor attributed to either a social interaction partner or the environment where the social encounter takes place (Study 2, 3, and 4). In the first study, a context conditioning procedure was applied, during which one out of two long-lasting neutral odors was paired with an unpredictable aversive unconditioned stimulus (US, i.e., white noise). This odor (CTX+) thereby gained threatening value, while another odor (CTX-) remained unpaired and therefore signaled safety. During a test session, facial stimuli were presented within both conditioned olfactory contexts. Results indicate that autonomic arousal was increased to faces when presented in the threatening odor context. Additionally, participants rated facial stimuli as more aversive when presented in the threatening odor as compared to the safety odor, indicating that faces acquire hedonic value from the odor they were presented in. Strikingly, angry facial expressions received additional processing resources when presented within a threatening olfactory context, as reflected on verbal reports and electrodermal activity (EDA). This latter finding suggests that threat-related stimuli, here angry faces, are preferentially processed within an olfactory context where a threat might happen. Considering that the hedonic value of an odor may be quite subjective, I conducted a pilot study in order to identify odors with pleasant vs. unpleasant properties for most participants. Seven odors (four pleasant and three unpleasant) were rated with respect to their valence (pleasant vs. unpleasant), arousal (arousing vs. calm), and intensity. Additionally, EDA was measured. Two pleasant (Citral and Eucalyptol) and two unpleasant (“Animalis” and Isobutyraldehyde) odors were chosen from the original seven. The unpleasant odors were rated as more negative, arousing, and intense than the positive ones, but no differences were found regarding EDA. These four odors were subsequently used in a virtual reality (VR) paradigm with two odor attribution groups. Participants of the social attribution group (n = 59) were always passively guided into the same room (an office) towards one out of two virtual agents who were either paired with the pleasant or the unpleasant odor. Participants of the contextual attribution group (n = 58) were guided into one out of two rooms which were either paired with the pleasant or the unpleasant odor and where they always met the same agent. For both groups, the agents smiled, frowned or remained with a neutral facial expression. This design allowed evaluating the influence of odor valence as a within-subjects factor and the influence of odor attribution as a between-subjects factor. Unpleasant odors facilitated the processing of social cues as reflected by increased verbal and physiological arousal as well as reduced active approach behavior. Specific influence of odor valence on emotional facial expressions was found for ratings, EDA, and facial mimicry, with the unpleasant odor causing a levelling effect on the differences between facial expressions. The social attribution group exhibited larger differences between odors than the contextual group with respect to some variables (i.e., ratings and EDA), but not to others (i.e., electrocortical potentials – ERPs – and approach behavior). In sum, unpleasant in comparison to pleasant odors diminished emotional responses during social interaction, while an additional enhancing effect of the social attribution was observed on some variables. Interestingly, the awareness that an interaction partner would smell (pleasantly or unpleasantly) boosted the emotional reactivity towards them. In Study 3, I adapted the VR paradigm to a within-subjects design, meaning that the different attribution conditions were now manipulated block-wise. Instead of an approach task, participants had to move away from the virtual agent (withdrawal task). Results on the ratings were replicated from Study 2. Specifically, the difference between pleasant and unpleasant odors on valence, arousal, and sympathy ratings was larger in the social as compared to the contextual attribution condition. No effects of odor or attribution were found on EDA, whereas heart rate (HR) showed a stronger acceleration to pleasant odors while participants were passively guided towards the agent. Instead of an approach task, I focused on withdrawal behavior in this study. Interestingly, independently of the attribution condition, participants spent more time withdrawing from virtual agents, when an unpleasant odor was presented. In sum, I demonstrated that the attribution of the odors to the social agent itself had an enhancing effect on their influence on social interaction. In the fourth and last study, I applied a similar within-subjects protocol as in Study 3 with an additional Ultimatum Game task as a measure of social interaction. Overall findings replicated the results of Study 3 with respect to HR and EDA. Strikingly, participants offered less money to virtual agents in the bad smelling room than in the good smelling room. In contrast to Study 3, no effects of odor attribution were found in Study 4. In sum, again I demonstrated that unpleasant odor may lessen social interaction not only when the interaction partner smells badly, but also in more complex interaction situations. In conclusion, I demonstrated that hedonic odors in general influence social interaction. Thus, pleasant odors seem to facilitate, while unpleasant odors seem to reduce interpersonal exchanges. Therefore, the present thesis extends the body of literature on the influence of odors on the processing of social stimuli. Although I found a direct influence of odors on social preferences as well as on the physiological and behavioral responses to social stimuli, I did not disentangle impact of odor per se from the impact of the affective state. Interestingly, odor attribution might play an additional role as mediator of social interactions such as odor effects in social interactions might be boosted when the smell is attributed to an individual. However, the results in this regard were less straightforward, and therefore further investigations are needed. Future research should also take into account gender or other inter-individual differences like social anxiety. N2 - Im täglichen Leben dienen Gerüche als starke Auslöser von emotionalen Zuständen, doch üben sie auch einen starken Einfluss auf soziale Interaktion aus. Angenehme Gerüche sollten die Attraktivität von Gesichtern und prosoziales Verhalten verstärken, während unangenehme Körpergerüche oft mit negativen Persönlichkeitseigenschaften assoziiert werden. Dieser Zusammenhang zeigt sich auch auf physiologischen und Verhaltensmaßen. Während angenehme Gerüche prosoziales Verhalten verstärken, kann derselbe Effekt auch durch einen positiven affektiven Zustand erreicht werden. Der Einfluss von Gerüchen auf soziale Interaktion könnte daher auch durch den affektiven Zustand der Versuchspersonen vermittelt werden. Die vorliegende Arbeit hatte zum Ziel, den Einfluss von hedonischen Gerüchen auf soziale Interaktion, wie er sich auf verschiedenen verbalen, physiologischen und Verhaltensvariablen abbilden lässt, darzustellen. Auf der einen Seite wurde der Einfluss von ursprünglich neutralen Gerüchen untersucht, die in einer Kontextkonditionierung bedrohliche Bedeutung erhielten (Studie 1). Auf der anderen Seite sollte der Einfluss eines Geruchs, der direkt von einem sozialen Interaktionspartner ausgeht, von dem eines eher kontextuellen Geruchs getrennt werden, der auf den Raum attribuiert wurde, in dem die soziale Interaktion stattfand (Studien 2, 3 und 4). In der ersten Studie wurde auf einen von zwei ursprünglich neutralen Gerüchen eine Kontextkonditionierungsprozedur angewandt. Dieser Geruch erhielt somit durch die Paarung mit einem aversiven unvorhersehbaren unkonditionierten Stimulus (US) bedrohliche Bedeutung, während der andere Geruch niemals mit einem unkonditionierten Stimulus gepaart wurde und dadurch Sicherheit signalisierte. In der Testphase wurden Gesichter entweder innerhalb des bedrohlichen Geruchs oder des Sicherheitsgeruchs präsentiert. Es konnte gezeigt werden, dass im Anschluss daran der bedrohliche Geruch die elektrokortikalen Potenziale (EKPs) auf Gesichter verstärkt, die in diesem Geruchskontext präsentiert werden. Zudem war das autonome Arousal während der Präsentation der Gesichsstimuli in diesem Kontext erhöht. Subjektive Ratings unterstützen zusätzlich die Annahme, dass die bedrohliche Bedeutung des Kontexts, in dem Gesichter präsentiert werden, auf diese übergeht. Zusätzlich zu diesem generellen Effekt konnte auf den subjektiven Ratings wie auch auf der elektrodermalen Aktivität (EDA) ein spezifischer Einfluss des olfaktorischen Kontexts auf die Verarbeitung von Gesichtern gezeigt werden. Ärgerliche Gesichter zogen dabei zusätzliche Verarbeitungsressourcen auf sich, wenn sie innerhalb eines bedrohlichen olfaktorischen Kontexts präsentiert wurden, wie sich auf der EDA und den verbalen Ratings zeigte. Zusammengefasst legen die letzteren Ergebnisse nahe, dass bedrohliche Reize (hier ärgerliche Gesichter) bevorzugt verarbeitet werden, wenn sie in einem ebenfalls bedrohlichen Kontext präsentiert werden. Um für die anschließenden Studien Gerüche zu identifizieren, die von den meisten Versuchspersonen als angenehm bzw. unangenehm bewertet werden, wurde vor der zweiten Studie eine Pilotstudie durchgeführt. Sieben Gerüche (vier angenehme und drei unangenehme) wurden bezüglich Valenz, Arousal und Intensität evaluiert. Zusätzlich wurde die EDA aufgezeichnet. Aus den ursprünglichen sieben Gerüchen wurden zwei angenehme (Citral und Eukalyptol) und zwei unangenehme („Animalis“ und Isobutanal) ausgewählt. Die unangenehmen Gerüche wurden als unangenehmer, aufregender und intensiver bewertet als die angenehmen, wohingegen in der EDA keine Unterschiede gefunden wurden. Studie 2 wandte die ausgewählten Gerüche in einem Experiment in virtueller Realität an. Um eine soziale und eine kontextuelle Attribution der Gerüche abzubilden, erhob ich zwei Attributions-gruppen. Versuchspersonen der sozialen Attributionsgruppe (n = 59) wurden passiv immer in denselben Raum geführt, in dem sie auf einen von zwei virtuellen Agenten trafen. Jeder dieser Agenten wurden mit entweder dem angenehmen oder dem unangenehmen Geruch gepaart. Probanden der kontextuellen Attributionsgruppe (n = 58) wurden jeweils passiv in einen von zwei Räumen geführt, der entweder mit dem angenehmen oder dem unangenehmen Geruch gepaart wurde. In diesen Räumen trafen sie immer auf denselben virtuellen Agenten. So war es möglich, den Einfluss der Geruchshedonik als Innersubjektfaktor und den Einfluss der Geruchsattribution als Zwischensubjektfaktor darzustellen. Der unangenehme Geruch erzeugte eine verstärkte Verarbeitung sozialer Reize, was sich in erhöhtem physiologischen Arousal, in subjektiven Ratings und vermindertem aktiven Annäherungsverhalten zeigte. Ein spezifischer Einfluss auf emotionale Gesichtsausdrücke war außerdem auf den subjektiven Ratings, EDA und der fazialen Mimikry zu beobachten. Hierbei zeigte sich ein abflachender Effekt auf den Unterschied zwischen den Gesichtsausdrücken, wenn der unangenehme Geruch präsentiert wurde. In der sozialen Attributionsgruppe fanden sich auf manchen Variablen stärkere Effekte als in der kontextuellen Attributionsgruppe (wie den Ratings und der EDA), aber auf anderen Variablen nicht (wie den EKPs und dem Annäherungsverhalten). Zusammenfassend konnte gezeigt werden, dass unangenehme Gerüche im Vergleich zu angenehmen emotionale Reaktionen auf soziale Interaktion vermindern. Ein zusätzlicher verstärkender Effekt durch die soziale Attribution der Gerüche war auf einigen Variablen zu beobachten. Interessanterweise scheint das Wissen darüber, dass ein Interaktionspartner riechen könnte, die emotionale Reaktion auf ihn zu verstärken. Für die dritte Studie passte ich das Paradigma für ein Innersubjektdesign an, wobei nun die beiden Attributionsbedingungen blockweise manipuliert wurden. Die Resultate der Ratings replizierten die aus Studie 2. Außerdem zeigten sich stärkere Effekte der Geruchsvalenz in der sozialen Attributionsbedingung auf allen Ratings. In der EDA wurden keine Effekte gefunden, aber in der Herzrate zeigte sich eine verstärkte Verarbeitung der angenehmen Gerüche während der passiven Annäherung an den Agenten. Statt des Annäherungsverhaltens wurde in dieser Studie das Rückzugsverhalten gemessen. Die Versuchspersonen verbrachten mehr Zeit damit, von einem Agenten zurückzuweichen, wenn ein unangenehmer Geruch präsentiert wurde. In Summe konnte ich zeigen, dass die Attribution der Gerüche auf den sozialen Agenten einen verstärkenden Effekt auf den Einfluss der Gerüche auf die soziale Interaktion hat. In der letzten Studie wurde dasselbe Protokoll wie in Studie 3 mit einer zusätzlichen Ultimatumspielaufgabe durchgeführt. Die Ergebnisse aus Studie 3 wurden bezüglich der Herzrate und der EDA repliziert. Außerdem boten die Versuchspersonen dem Agenten im Kontext eines unangenehmen Geruchs weniger Geld an als im Kontext eines angenehmen. In Studie 4 wurde kein Effekt für die Attribution des Geruchs gefunden. Zusammenfassend wurde gezeigt dass unangenehme Gerüche einen reduzierenden Effekt auf soziale Interaktion auch in komplexeren interaktiven Situationen ausüben. Zusammenfassend zeigte ich, dass Gerüche soziale Interaktion beeinflussen. Angenehme Gerüche scheinen soziale Interaktionen zu vereinfachen, während unangenehme Gerüche sie erschweren. Damit erweitert die vorliegende Arbeit bereits bestehende Forschung über den Einfluss von Gerüchen auf die Verarbeitung sozialer Stimuli. Obwohl ich einen direkten Einfluss von Gerüchen auf soziale Präferenzen sowie auf die physiologischen und behavioralen Reaktionen auf soziale Stimuli fand, konnte ich den Einfluss von Gerüchen per se nicht von dem Einfluss des affektiven Zustandes abgrenzen. Interessanterweise scheint die Attribution von Gerüchen einen zusätzlichen Faktor als Mediator von sozialen Interaktionen darzustellen, so dass der Effekt der Gerüche verstärkt wird, wenn er mit einem Individuum assoziiert ist. Nichtsdestotrotz waren die diesbezüglichen Effekte weniger klar und mehr Forschung auf diesem Gebiet könnte diese Unklarheit auflösen. Zukünftige Forschung sollte auch den Faktor Geschlecht nicht außer Acht lassen sowie andere inter-individuelle Unterschiede wie soziale Ängstlichkeit. KW - smell KW - social cognition KW - smells KW - social stimuli KW - social interaction Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-153352 ER - TY - JOUR A1 - Flechsenhar, Aleya Felicia A1 - Gamer, Matthias T1 - Top-down influence on gaze patterns in the presence of social features JF - PLoS ONE N2 - Visual saliency maps reflecting locations that stand out from the background in terms of their low-level physical features have proven to be very useful for empirical research on attentional exploration and reliably predict gaze behavior. In the present study we tested these predictions for socially relevant stimuli occurring in naturalistic scenes using eye tracking. We hypothesized that social features (i.e. human faces or bodies) would be processed preferentially over non-social features (i.e. objects, animals) regardless of their low-level saliency. To challenge this notion, we included three tasks that deliberately addressed non-social attributes. In agreement with our hypothesis, social information, especially heads, was preferentially attended compared to highly salient image regions across all tasks. Social information was never required to solve a task but was regarded nevertheless. More so, after completing the task requirements, viewing behavior reverted back to that of free-viewing with heavy prioritization of social features. Additionally, initial eye movements reflecting potentially automatic shifts of attention, were predominantly directed towards heads irrespective of top-down task demands. On these grounds, we suggest that social stimuli may provide exclusive access to the priority map, enabling social attention to override reflexive and controlled attentional processes. Furthermore, our results challenge the generalizability of saliency-based attention models. KW - eye movements KW - social features KW - visual saliency KW - gaze KW - face KW - attention Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-170468 VL - 12 IS - 8 ER - TY - JOUR A1 - Fisseler, Denis A1 - Müller, Gerfrid G. W. A1 - Weichert, Frank T1 - Web-Based scientific exploration and analysis of 3D scanned cuneiform datasets for collaborative research JF - Informatics N2 - The three-dimensional cuneiform script is one of the oldest known writing systems and a central object of research in Ancient Near Eastern Studies and Hittitology. An important step towards the understanding of the cuneiform script is the provision of opportunities and tools for joint analysis. This paper presents an approach that contributes to this challenge: a collaborative compatible web-based scientific exploration and analysis of 3D scanned cuneiform fragments. The WebGL -based concept incorporates methods for compressed web-based content delivery of large 3D datasets and high quality visualization. To maximize accessibility and to promote acceptance of 3D techniques in the field of Hittitology, the introduced concept is integrated into the Hethitologie-Portal Mainz, an established leading online research resource in the field of Hittitology, which until now exclusively included 2D content. The paper shows that increasing the availability of 3D scanned archaeological data through a web-based interface can provide significant scientific value while at the same time finding a trade-off between copyright induced restrictions and scientific usability. KW - cuneiform KW - 3D viewer KW - WebGL KW - Hittitology KW - 3D collation Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-197958 SN - 2227-9709 VL - 4 IS - 4 ER - TY - JOUR A1 - Fischer, Annette A1 - Harrison, Kelly S A1 - Ramirez, Yesid A1 - Auer, Daniela A1 - Chowdhury, Suvagata Roy A1 - Prusty, Bhupesh K A1 - Sauer, Florian A1 - Dimond, Zoe A1 - Kisker, Caroline A1 - Hefty, P Scott A1 - Rudel, Thomas T1 - Chlamydia trachomatis-containing vacuole serves as deubiquitination platform to stabilize Mcl-1 and to interfere with host defense JF - eLife N2 - Obligate intracellular Chlamydia trachomatis replicate in a membrane-bound vacuole called inclusion, which serves as a signaling interface with the host cell. Here, we show that the chlamydial deubiquitinating enzyme (Cdu) 1 localizes in the inclusion membrane and faces the cytosol with the active deubiquitinating enzyme domain. The structure of this domain revealed high similarity to mammalian deubiquitinases with a unique α-helix close to the substrate-binding pocket. We identified the apoptosis regulator Mcl-1 as a target that interacts with Cdu1 and is stabilized by deubiquitination at the chlamydial inclusion. A chlamydial transposon insertion mutant in the Cdu1-encoding gene exhibited increased Mcl-1 and inclusion ubiquitination and reduced Mcl-1 stabilization. Additionally, inactivation of Cdu1 led to increased sensitivity of C. trachomatis for IFNγ and impaired infection in mice. Thus, the chlamydial inclusion serves as an enriched site for a deubiquitinating activity exerting a function in selective stabilization of host proteins and protection from host defense. KW - cell-autonomous defense KW - Chlamydia trachomatis KW - deubiquitinase KW - Mcl-1 Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-171073 VL - 6 IS - e21465 ER - TY - RPRT A1 - Fischer (Hrsg.), Doris T1 - Tourism in Würzburg: Suggestions on how to enhance the travel experience for Chinese tourists BT - A student project at the Julius-Maximilian-University Würzburg N2 - This report provides suggestions on how to enhance the travel experience for Chinese tourists in the German city of Würzburg. Based on a user experience survey and a market research, this work includes a quantitative and competitive analysis. It further provides concrete and hands-on measurements for the city council to improve the experience of Chinese visitors coming to Würzburg. KW - China KW - Tourismus KW - user experience KW - travel experience KW - Würzburg KW - chinese tourists KW - Würzburg Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-143898 ET - 1. Auflage ER - TY - THES A1 - Fischbach, Martin Walter T1 - Enhancing Software Quality of Multimodal Interactive Systems T1 - Verbesserung der Softwarequalität multimodaler interaktiver Systeme N2 - Multimodal interfaces (MMIs) are a promising human-computer interaction paradigm. They are feasible for a wide rang of environments, yet they are especially suited if interactions are spatially and temporally grounded with an environment in which the user is (physically) situated. Real-time interactive systems (RISs) are technical realizations for situated interaction environments, originating from application areas like virtual reality, mixed reality, human-robot interaction, and computer games. RISs include various dedicated processing-, simulation-, and rendering subsystems which collectively maintain a real-time simulation of a coherent application state. They thus fulfil the complex functional requirements of their application areas. Two contradicting principles determine the architecture of RISs: coupling and cohesion. On the one hand, RIS subsystems commonly use specific data structures for multiple purposes to guarantee performance and rely on close semantic and temporal coupling between each other to maintain consistency. This coupling is exacerbated if the integration of artificial intelligence (AI) methods is necessary, such as for realizing MMIs. On the other hand, software qualities like reusability and modifiability call for a decoupling of subsystems and architectural elements with single well-defined purposes, i.e., high cohesion. Systems predominantly favour performance and consistency over reusability and modifiability to handle this contradiction. They thus accept low maintainability in general and hindered scientific progress in the long-term. This thesis presents six semantics-based techniques that extend the established entity-component system (ECS) pattern and pose a solution to this contradiction without sacrificing maintainability: semantic grounding, a semantic entity-component state, grounded actions, semantic queries, code from semantics, and decoupling by semantics. The extension solves the ECS pattern's runtime type deficit, improves component granularity, facilitates access to entity properties outside a subsystem's component association, incorporates a concept to semantically describe behavior as complement to the state representation, and enables compatibility even between RISs. The presented reference implementation Simulator X validates the feasibility of the six techniques and may be (re)used by other researchers due to its availability under an open-source licence. It includes a repertoire of common multimodal input processing steps that showcase the particular adequacy of the six techniques for such processing. The repertoire adds up to the integrated multimodal processing framework miPro, making Simulator X a RIS platform with explicit MMI support. The six semantics-based techniques as well as the reference implementation are validated by four expert reviews, multiple proof of concept prototypes, and two explorative studies. Informal insights gathered throughout the design and development supplement this assessment in the form of lessons learned meant to aid future development in the area. N2 - Multimodale Schnittstellen sind ein vielversprechendes Paradigma der Mensch-Computer-Interaktion. Sie sind in einer Vielzahl von Umgebungen einsetzbar und eignen sich besonders wenn Interaktionen zeitlich und räumlich mit einer Umgebung verankert sind in welcher der Benutzer (physikalisch) situiert ist. Interaktive Echtzeitsysteme (engl. Real-time Interactive Systems, RIS) sind technische Umsetzungen situierter Interaktionsumgebungen, die vor allem in Anwendungsgebieten wie der virtuellen Realität, der gemischten Realität, der Mensch-Roboter-Interaktion und im Bereich der Computerspiele eingesetzt werden. Interaktive Echtzeitsysteme bestehen aus vielfältigen dedizierten Subsystemen, die zusammen die Echtzeitsimulation eines kohärenten Anwendungszustands aufrecht erhalten und die komplexen funktionalen Anforderungen des Anwendungsgebiets erfüllen. Zwei gegensätzliche Prinzipien bestimmen die Softwarearchitekturen interaktiver Echtzeitsysteme: Kopplung und Kohäsion. Einerseits verwenden Subsysteme typischerweise spezialisierte Datenstrukturen um Performanzanforderungen gerecht zu werden. Um Konsistenz aufrecht zu erhalten sind sie zudem auf enge zeitliche- und semantische Abhängigkeiten untereinander angewiesen. Diese enge Kopplung wird verstärkt, falls Methoden der künstlichen Intelligenz in das RIS integriert werden müssen, wie es für die Umsetzung multimodaler Schnittstellen der Fall ist. Andererseits bedingen Softwarequalitätsmerkmale wie Wiederverwendbarkeit und Modifizierbarkeit die Entkopplung von Subsystemen und Architekturelementen und fordern hohe Kohäsion. Bestehende Systeme lösen diesen Konflikt überwiegend zu Gunsten von Performanz und Konsistenz und zu Lasten von Wiederverwendbarkeit und Modifizierbarkeit. Insgesamt wird auf diese Weise geringe Wartbarkeit akzeptiert und auf lange Sicht der wissenschaftliche Fortschritt eingeschränkt. Diese Arbeit stellt sechs Softwaretechniken auf Basis von Methoden der Wissensrepräsentation vor, welche das etablierte Entity-Component System (ECS) Entwurfsmuster erweitern und eine Lösung des Konflikts darstellen, die die Wartbarkeit nicht missachtet: semantic grounding, semantic entity-component state, grounded actions, semantic queries, code from semantics und decoupling by semantics. Diese Erweiterung löst das Introspektionsdefizit des ECS-Musters, verbessert die Granularität von ECS-Komponenten, erleichtert den Zugriff auf Entity-Eigenschaften außerhalb der Subsystem-Komponentenzuordnung, beinhaltet ein Konzept zur einheitlichen Beschreibung von Verhalten als Komplement zur Zustandsrepräsentation und ermöglicht sogar Kompatibilität zwischen interaktiven Echtzeitsystemen. Die vorgestellte Referenzimplementierung Simulator X weist die technische Machbarkeit der sechs Softwaretechniken nach. Sie kann von anderen Forschern auf Basis einer Open-Source Lizenz (wieder)verwendet werden und beinhaltet ein Repertoire an üblichen Verarbeitungsschritten für multimodalen Eingaben, welche die besondere Eignung der sechs Softwaretechniken für eine solche Eingabeverarbeitung veranschaulichen. Dieses Repertoire bildet zusammen das integrierte multimodale Eingabeverarbeitungs-Framework miPro und macht damit Simulator X zu einem RIS, welches explizit die Umsetzung von multimodalen Schnittstellen unterstützt. Die sechs Softwaretechniken sowie die Referenzimplementierung sind durch vier Expertengutachten, eine Vielzahl an technischen Demonstrationen sowie durch zwei explorative Studien validiert. Informelle Erkenntnisse, die während Design und Entwicklung gesammelt wurden, ergänzen diese Beurteilung in Form von lessons learned, welche bei künftigen Entwicklungsarbeiten in diesem Gebiet helfen sollen. KW - Echtzeitsystem KW - Framework KW - Ontologie KW - Multimodales System KW - Intelligent Real-time Interactive System KW - Virtual Reality KW - Mixed Reality KW - Multimodal System KW - Software Quality KW - Software Architecture KW - Multimodal Processing KW - Virtuelle Realität KW - Software Engineering Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-152723 ER - TY - JOUR A1 - Ferero, Andrea A1 - Rivero, Olga A1 - Wäldchen, Sina A1 - Ku, Hsing-Ping A1 - Kiser, Dominik P. A1 - Gärtner, Yvonne A1 - Pennington, Laura S. A1 - Waider, Jonas A1 - Gaspar, Patricia A1 - Jansch, Charline A1 - Edenhofer, Frank A1 - Resink, Thérèse J. A1 - Blum, Robert A1 - Sauer, Markus A1 - Lesch, Klaus-Peter T1 - Cadherin-13 Deficiency Increases Dorsal Raphe 5-HT Neuron Density and Prefrontal Cortex Innervation in the Mouse Brain JF - Frontiers in Cellular Neuroscience N2 - Background: During early prenatal stages of brain development, serotonin (5-HT)-specific neurons migrate through somal translocation to form the raphe nuclei and subsequently begin to project to their target regions. The rostral cluster of cells, comprising the median and dorsal raphe (DR), innervates anterior regions of the brain, including the prefrontal cortex. Differential analysis of the mouse 5-HT system transcriptome identified enrichment of cell adhesion molecules in 5-HT neurons of the DR. One of these molecules, cadherin-13 (Cdh13) has been shown to play a role in cell migration, axon pathfinding, and synaptogenesis. This study aimed to investigate the contribution of Cdh13 to the development of the murine brain 5-HT system. Methods: For detection of Cdh13 and components of the 5-HT system at different embryonic developmental stages of the mouse brain, we employed immunofluorescence protocols and imaging techniques, including epifluorescence, confocal and structured illumination microscopy. The consequence of CDH13 loss-of-function mutations on brain 5-HT system development was explored in a mouse model of Cdh13 deficiency. Results: Our data show that in murine embryonic brain Cdh13 is strongly expressed on 5-HT specific neurons of the DR and in radial glial cells (RGCs), which are critically involved in regulation of neuronal migration. We observed that 5-HT neurons are intertwined with these RGCs, suggesting that these neurons undergo RGC-guided migration. Cdh13 is present at points of intersection between these two cell types. Compared to wildtype controls, Cdh13-deficient mice display increased cell densities in the DR at embryonic stages E13.5, E17.5, and adulthood, and higher serotonergic innervation of the prefrontal cortex at E17.5. Conclusion: Our findings provide evidence for a role of CDH13 in the development of the serotonergic system in early embryonic stages. Specifically, we indicate that Cdh13 deficiency affects the cell density of the developing DR and the posterior innervation of the prefrontal cortex (PFC), and therefore might be involved in the migration, axonal outgrowth and terminal target finding of DR 5-HT neurons. Dysregulation of CDH13 expression may thus contribute to alterations in this system of neurotransmission, impacting cognitive function, which is frequently impaired in neurodevelopmental disorders including attention-deficit/hyperactivity and autism spectrum disorders. KW - serotonin KW - cadherin-13 (CDH13) KW - T-cadherin KW - neurodevelopment KW - psychiatric disorders KW - radial glia KW - dorsal raphe KW - prefrontal cortex Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-170313 VL - 11 IS - 307 ER - TY - THES A1 - Feichtner, Thorsten T1 - Optimal Design of Focusing Nanoantennas for Light : Novel Approaches: From Evolution to Mode-Matching T1 - Optimierung von Nano-Antennen zur Fokussierung von Licht: Neue Ansätze: Von Evolution zu Moden-Anpassung N2 - Optische Antennen arbeiten ähnlich wie Antennen für Radiowellen und wandeln elektromagnetische Strahlung in elektrische Wechselströme um. Ladungsdichteansammlungen an der Antennen-Oberfläche führen zu starken und lokalisierten Nahfeldern. Da die meisten optischen Antennen eine Ausdehnung von wenigen hundert Nanometern besitzen, ermöglichen es ihre Nahfelder, Licht auf ein Volumen weit unterhalb des Beugungslimits zu fokussieren, mit Intensitäten, die mehrere Größenordnungen über dem liegen, was man mit klassischer beugender und reflektierender Optik erreichen kann. Die Aufgabe, die Abstrahlung eines Quantenemitters zu maximieren, eines punktförmigen Objektes, welches einzelne Photonen absorbieren und emittieren kann, ist identisch mit der Aufgabe, die Feldintensität am Ort des Quantenemitters zu maximieren. Darum ist es erstrebenswert, den Fokus optischer Antennen zu optimieren Optimierte Radiofrequenz-Antennen, welche auf Größenordnungen von wenigen 100 Nanometern herunterskaliert werden, zeigen bereits eine gute Funktionalität. Jedoch liegen optische Frequenzen in der Nähe der Plasmafrequenz von den Metallen, die für optische Antennen genutzt werden und die Masse der Elektronen kann nicht mehr vernachlässigt werden. Dadurch treten neue physikalische Phänomene auf. Es entstehen gekoppelte Zustände aus Licht und Ladungsdichte-Schwingungen, die sogenannten Plasmonen. Daraus folgen Effekte wie Volumenströme und kürzere effektive Wellenlängen. Zusätzlich führt die endliche Leitfähigkeit zu thermischen Verluste. Das macht eine Antwort auf die Frage nach der optimalen Geometrie für fokussierende optische Antennen schwer. Jedoch stand vor dieser Arbeit der Beweis noch aus, dass es für optische Antennen bessere Alternativen gibt als herunterskalierte Radiofrequenz-Konzepte. In dieser Arbeit werden optische Antennen auf eine bestmögliche Fokussierung optimiert. Dafür wird ein Ansatz gewählt, welcher bei Radiofrequenz-Antennen für komplexe Anwendungsfelder (z.B. isotroper Breitbandempfang) schon oft Erfolg hatte: evolutionäre Algorithmen. Die hier eingeführte erste Implementierung erlaubt eine große Freiheit in Bezug auf Partikelform und Anzahl, da sie quadratische Voxel auf einem planaren, quadratischen Gitter beliebig anordnet. Die Geometrien werden in einer binären Matrix codiert, welche als Genom dient und somit Methoden wie Mutation und Paarung als Verbesserungsmechanismus erlaubt. So optimierte Antennen-Geometrien übertreffen vergleichbare klassische Dipol-Geometrien um einen Faktor von Zwei. Darüber hinaus lässt sich aus den optimierten Antennen ein neues Funktionsprinzip ableiten: ein magnetische Split-Ring-Resonanz kann mit Dipol-Antennen leitend zu neuartigen und effektiveren Split-Ring-Antennen verbunden werden, da sich ihre Ströme nahe des Fokus konstruktiv überlagern. Im nächsten Schritt wird der evolutionäre Algorithmus so angepasst, so die Genome real herstellbare Geometrien beschreiben. Zusätzlich wird er um eine Art ''Druckertreiber'' erweitert, welcher aus den Genomen direkt Anweisungen zur fokussierten Ionenstrahl-Bearbeitung von einkristallinen Goldflocken erstellt. Mit Hilfe von konfokaler Mikroskopie der Zwei-Photonen-Photolumineszenz wird gezeigt, dass Antennen unterschiedlicher Effizienz reproduzierbar aus dem evolutionären Algorithmus heraus hergestellt werden können. Außerdem wird das Prinzip der Split-Ring-Antenne verbessert, indem zwei Ring-Resonanzen zu einer Dipol-Resonanz hinzugefügt werden. Zu guter Letzt dient die beste Antenne des zweiten evolutionäre Algorithmus als Inspiration für einen neuen Formalismus zur Beschreibung des Leistungsübertrages zwischen einer optischen Antenne und einem Punkt-Dipol, welcher sich als "dreidimensionaler Modenüberlapp" beschreiben lässt. Damit können erstmals intuitive Regeln für die Form einer optischen Antenne aufgestellt werden. Die Gültigkeit der Theorie wird analytisch für den Fall eines Dipols nahe einer metallischen Nano-Kugel gezeigt. Das vollständige Problem, Licht mittels einer optischen Antenne zu fokussieren, lässt sich so auf die Erfüllung zweier Modenüberlapp-Bedingungen reduzieren -- mit dem Feld eines Punktdipols, sowie mit einer ebenen Welle. Damit lassen sich zwei Arten idealer Antennenmoden identifizieren, welche sich von der bekannten Dipol-Antennen-Mode grundlegend unterscheiden. Zum einen lässt sich dadurch die Funktionalität der evolutionären und Split-Ring-Antennen erklären, zum lassen sich neuartige plasmonische Hohlraum-Antennen entwerfen, welche zu besserer Fokussierung von Licht führen. Dies wird numerisch im direkten Vergleich mit einer klassischen Dipolantennen-Geometrie gezeigt. N2 - Optical antennas work similar to antennas for the radio-frequency regime and convert electromagnetic radiation into oscillating electrical currents. Charge density accumulations form at the antenna surface leading to strong and localized near-fields. Since most optical antennas have dimensions of a few hundred nanometers, their near-fields allow the focusing of electromagnetic fields to volumes much smaller than the diffraction limit, with intensities several orders of magnitude larger than achievable with classical diffractive and refractive optical elements. The task to maximize the emission of a quantum emitter, a point-like entity capable of reception and emission of single photons, is identical to the task to maximize the field intensity at the position of the quantum emitter. Therefore it is desirable to optimize the capabilities of focusing optical antennas. Radio-frequency-antenna designs scaled to optical dimensions of several hundred nanometers show already a decent performance. However, optical frequencies lie near the plasma frequency of the metals used for optical antennas and the mass of electrons cannot be neglected anymore. This leads to new physical phenomena. Light can couple to charge density oscillations, yielding a so-called Plasmon. Effects emerge which have no equivalent in the very advanced field of radio-frequency-technology, e.g.~volume currents and shortened effective wavelengths. Additionally the conductivity is not infinite anymore, leading to thermal losses. Therefore, the question for the optimal geometry of a focusing optical antenna is not easy to answer. However, up to now there was no evidence that there exist better alternatives for optical antennas than down-scaled radio-frequency designs. In this work the optimization of focusing optical antennas is based on an approach, which often proved successful for radio-frequency-antennas in complex applications (e.g.~broadband and isotropic reception): evolutionary algorithms. The first implementation introduced here allows a large freedom regarding particle shape and count, as it arranges cubic voxels on a planar, square grid. The geometries are encoded in a binary matrix, which works as a genome and enables the methods of mutation and crossing as mechanism of improvement. Antenna geometries optimized in this way surpass a comparable dipolar geometry by a factor of 2. Moreover, a new working principle can be deduced from the optimized antennas: a magnetic split-ring resonance can be coupled conductively to dipolar antennas, to form novel and more effective split-ring-antennas, as their currents add up constructively near the focal point. In a next step, the evolutionary algorithm is adapted so that the binary matrices describe geometries with realistic fabrication constraints. In addition a 'printer driver' is developed which converts the binary matrices into commands for focused ion-beam milling in mono-crystalline gold flakes. It is shown by means of confocal two-photon photo-luminescence microscopy that antennas with differing efficiency can be fabricated reliably directly from the evolutionary algorithm. Besides, the concept of the split-ring antenna is further improved by adding this time two split-rings to the dipole-like resonance. The best geometry from the second evolutionary algorithm inspires a fundamentally new formalism to determine the power transfer between an antenna and a point dipole, best termed 'three-dimensional mode-matching'. Therewith, for the first time intuitive design rules for the geometry of an focusing optical antenna can be deduced. The validity of the theory is proven analytically at the case of a point dipole in from of a metallic nano sphere. The full problem of focusing light by means of an optical antenna can, thus, be reduced to two simultaneous mode-matching conditions -- on the one hand with the fields of a point dipole, on the other hand with a plane wave. Therefore, two types of ideal focusing optical antenna mode patterns are identified, being fundamentally different from the established dipolar antenna mode. This allows not only to explain the functionality of the evolutionary antennas and the split-ring antenna, but also helps to design novel plamonic cavity antennas, which lead to an enhanced focusing of light. This is proven numerically in direct comparison to a classical dipole antenna design. KW - Physik KW - Plasmon KW - optical antennas KW - plasmonics KW - nano optics KW - LDOS KW - evolutionary optimization KW - mode matching KW - Optische Antennen KW - Plasmonik KW - Nano-Optik KW - Evolutionäre Optimierung Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-140604 ER - TY - JOUR A1 - Fehrholz, Markus A1 - Seidenspinner, Silvia A1 - Kunzmann, Steffen T1 - Expression of surfactant protein B is dependent on cell density in H441 lung epithelial cells JF - PLoS ONE N2 - Background Expression of surfactant protein (SP)-B, which assures the structural stability of the pulmonary surfactant film, is influenced by various stimuli, including glucocorticoids; however, the role that cell-cell contact plays in SP-B transcription remains unknown. The aim of the current study was to investigate the impact of cell-cell contact on SP-B mRNA and mature SP-B expression in the lung epithelial cell line H441. Methods Different quantities of H441 cells per growth area were either left untreated or incubated with dexamethasone. The expression of SP-B, SP-B transcription factors, and tight junction proteins were determined by qPCR and immunoblotting. The influence of cell density on SP-B mRNA stability was investigated using the transcription inhibitor actinomycin D. Results SP-B mRNA and mature SP-B expression levels were significantly elevated in untreated and dexamethasone-treated H441 cells with increasing cell density. High cell density as a sole stimulus was found to barely have an impact on SP-B transcription factor and tight junction mRNA levels, while its stimulatory ability on SP-B mRNA expression could be mimicked using SP-B-negative cells. SP-B mRNA stability was significantly increased in high-density cells, but not by dexamethasone alone. Conclusion SP-B expression in H441 cells is dependent on cell-cell contact, which increases mRNA stability and thereby potentiates the glucocorticoid-mediated induction of transcription. Loss of cell integrity might contribute to reduced SP-B secretion in damaged lung cells via downregulation of SP-B transcription. Cell density-mediated effects should thus receive greater attention in future cell culture-based research. KW - messenger RNA KW - surfactants KW - epithelial cells KW - transcription factors KW - gene expression KW - tight junctions KW - adenocarcinoma of the lung KW - immunoblotting Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-158291 VL - 12 IS - 9 ER - TY - JOUR A1 - Fehrholz, Markus A1 - Glaser, Kirsten A1 - Speer, Christian P. A1 - Seidenspinner, Silvia A1 - Ottensmeier, Barbara A1 - Kunzmann, Steffen T1 - Caffeine modulates glucocorticoid-induced expression of CTGF in lung epithelial cells and fibroblasts JF - Respiratory Research N2 - Background: Although caffeine and glucocorticoids are frequently used to treat chronic lung disease in preterm neonates, potential interactions are largely unknown. While anti-inflammatory effects of glucocorticoids are well defined, their impact on airway remodeling is less characterized. Caffeine has been ascribed to positive effects on airway inflammation as well as remodeling. Connective tissue growth factor (CTGF, CCN2) plays a key role in airway remodeling and has been implicated in the pathogenesis of chronic lung diseases such as bronchopulmonary dysplasia (BPD) in preterm infants. The current study addressed the impact of glucocorticoids on the regulation of CTGF in the presence of caffeine using human lung epithelial and fibroblast cells. Methods: The human airway epithelial cell line H441 and the fetal lung fibroblast strain IMR-90 were exposed to different glucocorticoids (dexamethasone, budesonide, betamethasone, prednisolone, hydrocortisone) and caffeine. mRNA and protein expression of CTGF, TGF-β1-3, and TNF-α were determined by means of quantitative real-time PCR and immunoblotting. H441 cells were additionally treated with cAMP, the adenylyl cyclase activator forskolin, and the selective phosphodiesterase (PDE)-4 inhibitor cilomilast to mimic caffeine-mediated PDE inhibition. Results: Treatment with different glucocorticoids (1 μM) significantly increased CTGF mRNA levels in H441 (p < 0.0001) and IMR-90 cells (p < 0.01). Upon simultaneous exposure to caffeine (10 mM), both glucocorticoid-induced mRNA and protein expression were significantly reduced in IMR-90 cells (p < 0.0001). Of note, 24 h exposure to caffeine alone significantly suppressed basal expression of CTGF mRNA and protein in IMR-90 cells. Caffeine-induced reduction of CTGF mRNA expression seemed to be independent of cAMP levels, adenylyl cyclase activation, or PDE-4 inhibition. While dexamethasone or caffeine treatment did not affect TGF-β1 mRNA in H441 cells, increased expression of TGF-β2 and TGF-β3 mRNA was detected upon exposure to dexamethasone or dexamethasone and caffeine, respectively. Moreover, caffeine increased TNF-α mRNA in H441 cells (6.5 ± 2.2-fold, p < 0.05) which has been described as potent inhibitor of CTGF expression. Conclusions: In addition to well-known anti-inflammatory features, glucocorticoids may have adverse effects on long-term remodeling by TGF-β1-independent induction of CTGF in lung cells. Simultaneous treatment with caffeine may attenuate glucocorticoid-induced expression of CTGF, thereby promoting restoration of lung homeostasis. KW - airway remodeling KW - fibrosis KW - bronchopulmonary dysplasia KW - caffeine KW - CCN2 KW - CTGF KW - glucocorticoids KW - H441 KW - IMR-90 Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-157672 VL - 18 IS - 51 ER - TY - JOUR A1 - Fayez, Shaimaa A1 - Feineis, Doris A1 - Mudogo, Virima A1 - Awale, Suresh A1 - Bringmann, Gerhard T1 - Ancistrolikokines E-H and related 5,8\('\)-coupled naphthylisoquinoline alkaloids from the Congolese liana \(Ancistrocladus\) \(likoko\) with antiausterity activities against PANC-1 human pancreatic cancer cells JF - RSC Advances N2 - A striking feature of the metabolite profile of \(Ancistrocladus\) \(likoko\) (Ancistrocladaceae) is the exclusive production of 5,8\('\)-linked naphthylisoquinoline alkaloids varying in their OMe/OH substitution patterns and in the hydrogenation degree in their isoquinoline portions. Here we present nine new compounds of this coupling type isolated from the twigs of this remarkable Central African liana. Three of them, the ancistrolikokines E (9), E\(_2\) (10), and F (11), are the first 5,8\('\)-linked naphthyldihydroisoquinolines found in nature with \(R\)-configuration at C-3. The fourth new metabolite, ancistrolikokine G (12), is so far the only representative of the 5,8\('\)-coupling type that belongs to the very rare group of alkaloids with a fully dehydrogenated isoquinoline portion. Moreover, five new \(N\)-methylated naphthyltetrahydroisoquinolines, named ancistrolikokines A\(_2\) (13), A\(_3\) (14), C\(_2\) (5), H (15), and H\(_2\) (16) are presented, along with six known 5,8\('\)-linked alkaloids, previously identified in related African \(Ancistrocladus\) species, now found for the first time in \(A.\) \(likoko\). The structural elucidation was achieved by spectroscopic analysis (HRESIMS, 1D and 2D NMR) and by chemical (oxidative degradation) and chiroptical (electronic circular dichroism) methods. The new ancistrolikokines showed moderate to good preferential cytotoxic activities towards pancreatic PANC-1 cells in nutrient-deprived medium (NDM), without causing toxicity under normal, nutrient-rich conditions, with ancistrolikokine H\(_2\) (16) being the most potent compound. KW - chemistry KW - Ancistrocladus likoko KW - alkaloids KW - bioactive compound KW - anti-cancer-agent KW - pancreatic cancer KW - naphthylisoquinoline alkaloid KW - spectroscopic analysis Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-172008 VL - 7 IS - 85 ER - TY - JOUR A1 - Faggion, Clovis Mariano, Jr. A1 - Apaza, Karol A1 - Ariza-Fritas, Tania A1 - Málaga, Lilian A1 - Giannakopoulos, Nikolaos Nikitas A1 - Alarcón, Marco Antonio T1 - Methodological quality of consensus guidelines in implant dentistry JF - PLOS One N2 - Background: Consensus guidelines are useful to improve clinical decision making. Therefore, the methodological evaluation of these guidelines is of paramount importance. Low quality information may guide to inadequate or harmful clinical decisions. Objective: To evaluate the methodological quality of consensus guidelines published in implant dentistry using a validated methodological instrument. Methods: The six implant dentistry journals with impact factors were scrutinised for consensus guidelines related to implant dentistry. Two assessors independently selected consensus guidelines, and four assessors independently evaluated their methodological quality using the Appraisal of Guidelines for Research & Evaluation (AGREE) II instrument. Disagreements in the selection and evaluation of guidelines were resolved by consensus. First, the consensus guidelines were analysed alone. Then, systematic reviews conducted to support the guidelines were included in the analysis. Non-parametric statistics for dependent variables (Wilcoxon signed rank test) was used to compare both groups. Results: Of 258 initially retrieved articles, 27 consensus guidelines were selected. Median scores in four domains (applicability, rigour of development, stakeholder involvement, and editorial independence), expressed as percentages of maximum possible domain scores, were below 50% (median, 26%, 30.70%, 41.70%, and 41.70%, respectively). The consensus guidelines and consensus guidelines + systematic reviews data sets could be compared for 19 guidelines, and the results showed significant improvements in all domain scores (p < 0.05). Conclusions: Methodological improvement of consensus guidelines published in major implant dentistry journals is needed. The findings of the present study may help researchers to better develop consensus guidelines in implant dentistry, which will improve the quality and trust of information needed to make proper clinical decisions. KW - Medical implants KW - Dentistry KW - Systematic reviews KW - Medical journals KW - Treatment guidelines KW - Osseointegration KW - Osteology KW - Database searching Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-180987 VL - 12 IS - 1 ER - TY - THES A1 - Ezenwa, Paul Chinedu T1 - The Value of Human Dignity: A Socio-Cultural Approach to Analyzing the Crisis of Values among Igbo People of Nigeria T1 - Der Wert der Menschenwürde: Ein soziokultureller Ansatz zur Analyse der Krise der Werte unter den Igbo-Menschen in Nigeria N2 - Starting from conception till death, man as a being relates with others. In this relationship he often encounters lots of problems that threaten his existence. One of them is the threat to his dignity. This experience is vivid in many countries particularly in Africa. But my work is limited to an ethnic group in Nigeria, namely Igbo people. The work discloses the extent 'displacement of value' in Igboland has contributed to the devaluation of human dignity and the attempts made to combat it. This displacement resulted in what we can call "value crisis". Some elements, like Igbo culture and cultural communication with foreign cultures that have tentacles in modernized orientation, are discussed as 'transmission carriers'. In order to x-ray properly the heart of this research and communicate the necessary messages, the work is presented in six chapters. However, this summary will not be presented in chapters. Thus the need for a research on the reason for the failings and crisis of approach regarding this aspect of Igbo life that deals with the value of human dignity. This comes to term with the question which asked has the interest in the enhancement of the dignity of man waned because the effort towards this goal seem futile and unnecessary…Or is human dignity something we care about but take for granted as a cultural inheritance that no longer needs defence?” This question arouses thoughts on the value of HD. The entire work tried to justify the view that the protection of HD is for all times a true assignment of all. This must neither be considered to be relevant only for a time nor only for a portion or a group of individuals. Thus a special attention on this regard is demanded especially in modern day Igbo society. N2 - Von der Zeugung bis zum Tod ist der Mensch ein Wesen in Beziehung zu anderen. Unabhängig davon hat der Mensch ein Problem damit, die Würde des anderen wahr werden zulassen. Daher die Notwendigkeit einer Forschung bezüglich der Annäherungskrise in der Richtung eines Igbo Lebens, das sich mit dem Wert der menschlichen Würde beschäftigt. Das steht im Zusammenhang mit der Frage: Ist die Sorge um die menschliche Würde etwas, womit man sich mal beschäftigt hat, heute aber nicht mehr, weil die Mühe umsonst zu sein scheint, oder ist diese menschliche Würde etwas wichtiges, aber auch als selbstverständliches Kulturerbe, das keiner Verteidigung mehr bedarf? Diese Frage setzt Gedanken hinsichtlich der menschlichen Würde in Bewegung. Das Projekt berechtigt die Annahme, dass die Verteidigung des Werts der menschlichen Würde eine gemeinsame Aufgabe ist. Dabei sollte es nicht als für eine gewisse Zeit relevant angesehen werden, noch für eine bestimmte Gruppierung. Das bedarf einer gewissen Aufmerksamkeit in der modernen Gesellschaft der Igbo. KW - Dignity KW - Socio-Cultural KW - Crisis KW - Value KW - Igbo KW - Soziale-Kulturelle KW - Würde KW - Krise KW - Werte KW - Nigeria KW - Ibo KW - Menschenwürde Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-147603 ER - TY - JOUR A1 - Ewald, Jan A1 - Bartl, Martin A1 - Dandekar, Thomas A1 - Kaleta, Christoph T1 - Optimality principles reveal a complex interplay of intermediate toxicity and kinetic efficiency in the regulation of prokaryotic metabolism JF - PLOS Computational Biology N2 - A precise and rapid adjustment of fluxes through metabolic pathways is crucial for organisms to prevail in changing environmental conditions. Based on this reasoning, many guiding principles that govern the evolution of metabolic networks and their regulation have been uncovered. To this end, methods from dynamic optimization are ideally suited since they allow to uncover optimality principles behind the regulation of metabolic networks. We used dynamic optimization to investigate the influence of toxic intermediates in connection with the efficiency of enzymes on the regulation of a linear metabolic pathway. Our results predict that transcriptional regulation favors the control of highly efficient enzymes with less toxic upstream intermediates to reduce accumulation of toxic downstream intermediates. We show that the derived optimality principles hold by the analysis of the interplay between intermediate toxicity and pathway regulation in the metabolic pathways of over 5000 sequenced prokaryotes. Moreover, using the lipopolysaccharide biosynthesis in Escherichia coli as an example, we show how knowledge about the relation of regulation, kinetic efficiency and intermediate toxicity can be used to identify drug targets, which control endogenous toxic metabolites and prevent microbial growth. Beyond prokaryotes, we discuss the potential of our findings for the development of antifungal drugs. KW - Enzyme regulation KW - Toxicity KW - Metabolic pathways KW - Enzymes KW - Transcriptional control KW - Enzyme kinetics KW - Enzyme metabolism KW - Predictive toxicology Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-180870 VL - 13 IS - 2 ER - TY - JOUR A1 - Erlbeck, Helena A1 - Mochty, Ursula A1 - Kübler, Andrea A1 - Real, Ruben G. L. T1 - Circadian course of the P300 ERP in patients with amyotrophic lateral sclerosis - implications for brain-computer interfaces (BCI) JF - BMC Neurology N2 - Background: Accidents or neurodegenerative diseases like amyotrophic lateral sclerosis (ALS) can lead to progressing, extensive, and complete paralysis leaving patients aware but unable to communicate (locked-in state). Brain-computer interfaces (BCI) based on electroencephalography represent an important approach to establish communication with these patients. The most common BCI for communication rely on the P300, a positive deflection arising in response to rare events. To foster broader application of BCIs for restoring lost function, also for end-users with impaired vision, we explored whether there were specific time windows during the day in which a P300 driven BCI should be preferably applied. Methods: The present study investigated the influence of time of the day and modality (visual vs. auditory) on P300 amplitude and latency. A sample of 14 patients (end-users) with ALS and 14 healthy age matched volunteers participated in the study and P300 event-related potentials (ERP) were recorded at four different times (10, 12 am, 2, & 4 pm) during the day. Results: Results indicated no differences in P300 amplitudes or latencies between groups (ALS patients v. healthy participants) or time of measurement. In the auditory condition, latencies were shorter and amplitudes smaller as compared to the visual condition. Conclusion: Our findings suggest applicability of EEG/BCI sessions in patients with ALS throughout normal waking hours. Future studies using actual BCI systems are needed to generalize these findings with regard to BCI effectiveness/efficiency and other times of day. KW - brain computer interface KW - amyotrophic lateral sclerosis KW - ALS KW - P300 KW - auditory KW - visual KW - BCI Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-157423 VL - 17 IS - 3 ER - TY - JOUR A1 - Erdmenger, Johanna A1 - Hoyos, Carlos A1 - O'Bannon, Andy A1 - Papadimitriou, Ioannis A1 - Probst, Jonas A1 - Wu, Jackson M.S. T1 - Two-point functions in a holographic Kondo model JF - Journal of High Energy Physics N2 - We develop the formalism of holographic renormalization to compute two-point functions in a holographic Kondo model. The model describes a (0 + 1)-dimensional impurity spin of a gauged SU(N ) interacting with a (1 + 1)-dimensional, large-N , strongly-coupled Conformal Field Theory (CFT). We describe the impurity using Abrikosov pseudo-fermions, and define an SU(N )-invariant scalar operator O built from a pseudo-fermion and a CFT fermion. At large N the Kondo interaction is of the form O\(^{†}\)O, which is marginally relevant, and generates a Renormalization Group (RG) flow at the impurity. A second-order mean-field phase transition occurs in which O condenses below a critical temperature, leading to the Kondo effect, including screening of the impurity. Via holography, the phase transition is dual to holographic superconductivity in (1 + 1)-dimensional Anti-de Sitter space. At all temperatures, spectral functions of O exhibit a Fano resonance, characteristic of a continuum of states interacting with an isolated resonance. In contrast to Fano resonances observed for example in quantum dots, our continuum and resonance arise from a (0 + 1)-dimensional UV fixed point and RG flow, respectively. In the low-temperature phase, the resonance comes from a pole in the Green’s function of the form −i〈O〉\(^{2}\), which is characteristic of a Kondo resonance. KW - holography and condensed matter physics (AdS/CMT) KW - AdS-CFT Correspondence KW - gauge-gravity correspondence Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-171139 VL - 3 IS - 39 ER - TY - JOUR A1 - Erdmenger, Johanna A1 - Fernández, Daniel A1 - Flory, Mario A1 - Megías, Eugenio A1 - Straub, Ann-Kathrin A1 - Witkowski, Piotr T1 - Time evolution of entanglement for holographic steady state formation JF - Journal of High Energy Physics N2 - Within gauge/gravity duality, we consider the local quench-like time evolution obtained by joining two 1+1-dimensional heat baths at different temperatures at time \(t\) = 0. A steady state forms and expands in space. For the 2+1-dimensional gravity dual, we find that the “shockwaves” expanding the steady-state region are of spacelike nature in the bulk despite being null at the boundary. However, they do not transport information. Moreover, by adapting the time-dependent Hubeny-Rangamani-Takayanagi prescription, we holographically calculate the entanglement entropy and also the mutual information for different entangling regions. For general temperatures, we find that the entanglement entropy increase rate satisfies the same bound as in the ‘entanglement tsunami’ setups. For small temperatures of the two baths, we derive an analytical formula for the time dependence of the entanglement entropy. This replaces the entanglement tsunami-like behaviour seen for high temperatures. Finally, we check that strong subadditivity holds in this time-dependent system, as well as further more general entanglement inequalities for five or more regions recently derived for the static case. KW - Physics KW - AdS-CFT Correspondence KW - Gauge-gravity correspondence KW - Holography and condensed matter physics (AdS/CMT) Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-173798 VL - 2017 IS - 10 ER - TY - JOUR A1 - Emmert, Adrian A1 - Kneisel, Christof T1 - Internal structure of two alpine rock glaciers investigated by quasi-3-D electrical resistivity imaging JF - The Cryosphere N2 - Interactions between different formative processes are reflected in the internal structure of rock glaciers. Therefore, the detection of subsurface conditions can help to enhance our understanding of landform development. For an assessment of subsurface conditions, we present an analysis of the spatial variability of active layer thickness, ground ice content and frost table topography for two different rock glaciers in the Eastern Swiss Alps by means of quasi-3-D electrical resistivity imaging (ERI). This approach enables an extensive mapping of subsurface structures and a spatial overlay between site-specific surface and subsurface characteristics. At Nair rock glacier, we discovered a gradual descent of the frost table in a downslope direction and a constant decrease of ice content which follows the observed surface topography. This is attributed to ice formation by refreezing meltwater from an embedded snow bank or from a subsurface ice patch which reshapes the permafrost layer. The heterogeneous ground ice distribution at Uertsch rock glacier indicates that multiple processes on different time domains were involved in the development. Resistivity values which represent frozen conditions vary within a wide range and indicate a successive formation which includes several advances, past glacial overrides and creep processes on the rock glacier surface. In combination with the observed topography, quasi-3-D ERI enables us to delimit areas of extensive and compressive flow in close proximity. Excellent data quality was provided by a good coupling of electrodes to the ground in the pebbly material of the investigated rock glaciers. Results show the value of the quasi-3-D ERI approach but advise the application of complementary geophysical methods for interpreting the results. KW - Fernerkundung KW - Gletscher KW - Alpen KW - Struktur Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-157569 VL - 11 ER - TY - JOUR A1 - Elsässer, S. A1 - Schiebl, M. A1 - Mukhin, A. A. A1 - Balbashov, A. M. A1 - Pimenov, A. A1 - Geurts, J. T1 - Impact of temperature-dependent local and global spin order in \(R\)MnO\(_3\) compounds for spin-phonon coupling and electromagnon activity JF - New Journal of Physics N2 - The orthorhombic rare-earth manganite compounds \(R\)MnO\(_3\) show a global magnetic order for \(T\) < \(T\)\(_N\), and several representatives are multiferroic with a cycloidal spin ground state order for \(T\) < \(T\)\(_c\)\(_y\)\(_c\)\(_l\) < \(T\)\(_N\) \(\approx\) 40 K. We deduce from the temperature dependence of spin–phonon coupling in Raman spectroscopy for a series of \(R\)MnO\(_3\) compounds that their spin order locally persists up to about twice \(T\)\(_N\). Along the same line, our observation of the persistence of the electromagnon in GdMnO\(_3\) up to \(T\) \(\approx\) 100 K is attributed to a local cycloidal spin order for \(T\) > \(T\)\(_c\)\(_y\)\(_c\)\(_l\), in contrast to the hitherto assumed incommensurate sinusoidal phase in the intermediate temperature range. The development of the magnetization pattern can be described in terms of an order–disorder transition at \(T\)\(_c\)\(_y\)\(_c\)\(_l\) within a pseudospin model of localized spin cycloids with opposite chirality. KW - physics KW - RMnO3 KW - multiferroics KW - electromagnon KW - Raman spectroscopy KW - spin-phonon coupling Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-171978 VL - 19 ER - TY - THES A1 - ElBashir, Rasha T1 - Development of New Mass Spectrometry-based Methods for the Analysis of Posttranslational Modifications T1 - Entwicklung neuer massenspektrometrischer Methoden für die Analyse posttranslationaler Proteinmodifikationen N2 - Posttranslational modifications (PTMs) play a crucial role in many cellular processes. They are reversible, dynamic, and highly regulated events that alter the properties of proteins and increase their functional diversity. The identification and quantification of PTMs are critical for deciphering the molecular mechanisms of PTMs-related biological processes and disease treatment and prevention. Two of the most common and important PTMs that regulate many protein functions are acetylation and phosphorylation. An important role of acetylation is the regulation of DNA/RNA-protein interactions. A prominent example for this are histones, whose tail regions are lysine-rich and can be highly acetylated at their N-terminal domain. In spite of the utmost importance of this PTM, methods that allow the accurate measuring the site-specific acetylation degree are missing. One of the challenges in quantifying the acetylation degree at an individual lysine residue of the histones N-termini is the occurrence of multiple lysines in close proximity. Herein, we describe the development of the ”Fragment Ion Patchwork Quantification,” a new mass spectrometry-based approach for the highly accurate quantification of sites-pecific acetylation degrees. This method combines 13C1-acetyl derivatization on the protein level, proteolysis by low-specificity proteases and quantification on the fragment ion level. Acetylation degrees are determined from the isotope patterns of acetylated b and y ions. We have shown that this approach allows determining the site-specific acetylation degrees of all lysine residues for all core histones of Trypanosoma brucei. In addition, we demonstrate the use of this approach to identify the substrate sites of histone acetyltransferases and to monitor the changes in acetylation of the histones of canonical nucleosome and transcription start site nucleosomes. Phosphorylation is one of the most common and most important PTMs. The analysis of the human genome showed that there are about 518 kinases and more than 500,000 phosphorylation sites are believed to exist in the cellular proteome. Protein phosphorylation plays a crucial role in signaling many different cell processes, such as intercellular communication, cell growth, differentiation of proliferation and apoptosis. Whereas MS-based identification and relative quantification of singly phosphorylated peptides have been greatly improved during the last decade, and large-scale analysis of thousands of phosphopeptides can now be performed on a routine-base, the analysis of multi-phosphorylated peptides is still lagging vastly behind. The low pKa value of phosphate group and the associated negative charge are considered the major source of the problems with the analysis of multi-phosphorylated peptides. These problems include the formation of phosphopeptide-metal complexes during liquid chromatography (e.g. Fe 3+), which leads to a drastic deterioration of the chromatographic properties of these peptides (peak tailing), the decreased ionization efficiencies of phosphorylated peptides compared to their unphosphorylated counterparts, the labile nature of phosphate during CID/HCD fragmentation, and the unsuitability of low-charged phosphopeptides for ETD fragmentation are the most important factors that hinder phosphorylation analysis by LC-MS/MS. Here we aimed to develop a method for improving the identification of multi-phosphorylated peptides as well as the localization of phosphorylation sites by charge-reversal derivatization of the phosphate groups. This method employs a carbodiimide-mediated phosphoramidation to converted the phosphates to stable aromatic phosphoramidates. This chemical modification of phosphosite(s) reversed the negative charge of the phosphate group(s) and increased the number of the positive charges within the phosphopeptide. This modification prevented the formation of phosphopeptide-metal ion complexes that dramatically decreases or completely diminishes the signal intensity of protonated phosphopeptides, specifically multi-phosphorylated peptides. Furthermore, the increased net charge the (phospho-)peptides made them suitable for ETD fragmentation, which generated a high number of fragment ions with high intensities that led to a better phosphopeptide identification and localization of phosphosite(s) with high confidence. N2 - Posttranslationale Modifikationen (PTMs) spielen eine entscheidende Rolle in vielen zellulären Prozessen. Sie sind reversible, dynamische und hochregulierte Ereignisse, die die Proteineneigenschaften verändern und ihre funktionale Diversität erhöhen. Die Identifizierung und Quantifizierung von PTMs sind wesentlich für die Entschlüsselung der molekularen Mechanismen von PTM-regulierten biologischen Prozessen und für ein besseres Verständnis der Rolle posttranslationaler Modifikationen bei einer Vielzahl von Krankheiten. Zwei der bedeutendsten PTMs, welche die Funktion unzähliger Proteine regulieren sind die Acetylierung an Lysin-Resten und die Phosphorylierung an Serin-, Threonin- und Tyrosinresten. Im Rahmen dieser Arbeit wurden eine neue Methode zur Bestimmung des positionsspezifischen Acetylierungsgrades, sowie verbesserte Methoden für die Analyse der Phosphorylierung mittels Flüssigchromatographie-gekoppelter Tandem Massenspektrometrie entwickelt. Wir haben eine neue MS-basierte Methode (”Fragment Ion Patchwork Quantification”) entwickelt, welche es erlaubt die Acetylierungsgrade an individuellen Positionen mit hoher Genauigkeit zu messen. Diese Methode kombiniert die 13C1- Acetylderivatisierung von intakte Proteine, die Proteolyse durch Proteasen mit niedriger Spezifität, und die Quantifizierung auf dem MS2-Level. Die Acetylierungsgrade werden aus den Isotopenmustern von acetylierten b- und y-Ionen bestimmt. Obwohl unsere Methode zur Quantifizierung der positionsspezifischen Acetylierungsgrade auf jedes beliebige Protein angewandt werden kann, stand bei der Methodenentwicklung die Analyse der Histonacetylierung aufgrund ihrer herausragenden Bedeutung bei der Regulation der Genexpression im Vordergrund. Wir haben gezeigt, dass mit dieser Methode die Bestimmung der positionsspezifischen Acetylierungsgrade an allen Lysin Resten aller Core-Histone von Nukleosomhistone von Trypanosoma brucei möglich ist. Darüber hinaus haben wir diese Methode angewandt, um die Substrat-Positionen von Histon Acetyltransferasen zu identifizieren und um quantitative Veränderungen der Acetylierung an Histonen aus kanonischen Nukleosomen sowie Nukleosomen an Transkriptionsstartstellen zu analysieren. Phosphorylierung ist eine der häufigsten und wichtigsten posttranslational Proteinmodifikationen. Im Verlauf des Sequenzierung des humanen Genoms wurden 518 Gene für Proteinkinasen entdeckt und es wird angenommen, dass im zellulären Proteom mehr als 500 000 Phosphorylierungsstellen existieren. Die Proteinphosphorylierung spielet eine entscheidende Rolle in der Signalisierung vieler verschiedener Zellprozesse wie zum Beispiel der interzellulären Kommunikation, dem Zellwachstum, der Differenzierung der Proliferation und der Apoptose. Während bei der massenspektrometrie-basierte Identifizierung und relativen Quantifizierung von einfach phosphorylierten Peptiden in den letzten große Fortschritte erzielt wurden, und die Analyse tausender Phosphopeptide mittlerweile häufig routinemäßig durchgeführt werden kann, bereitet die massenspektrometrische Analyse merhfach phosphorylierter Peptide nach wie vor große Probleme. Der niedrige pKa-Wert der Phosphatgruppe, und die damit einhergehende negative Ladung ist die Hauptursache für die Probleme bei der Analyse merhfach phosphorylierter Peptide. Die mehrfache negative Ladung dieser Peptide führt zu einer ausgeprägten Neigung zur Komplexbildung mit mehrwertigen Metallionen (wie z.B. Fe3+), welche zu einer drmatischen Verschlechterung der chromatographischen Eigenschaften dieser Peptide führt (Peak Tailing), zu einer Verschlechterung der Ionisierungseffizienz, und zu einem ungewöhnlich niedrigen Protonierungsgrad im Positivionen-Modus, welcher diese Peptide für eine Fragmentierung mittels ETD ungeeignet macht. Im Rahmen dieser Arbeit wurde mittels chemischer Modifikation der Phosphatgruppe versucht sowohl die Detektion von mehrfach-phosphorylierten Peptiden, als auch die Lokalisierung von Phosphorylierungsstellen zu verbessern. Hierfür wurden die Phosphatgruppen unter Verwendung des Aktivierungsreagenzes EDC in hydrolysestabile, aromatische Phosphoramidate überführt. Die durch diese Modifikation erzielte Ladungsumkehr führt wie erwartet zu einer verbesserten Signalintensität bei den entsprechend modifizierten Phosphopeptiden, sowie zu einem verbesserten Fragmentierungsverhalten bei ETD, und somit letztlich zu einer verbesserten Lokalisierbarkeit der Phosphatgruppe inerhalb des Peptids. KW - LC-MS KW - Posttranslationale Änderung KW - Acetylierung KW - Phosphorylierung KW - Quantifizierung KW - Mass Spectrometry KW - PTMs KW - Acetylation KW - Quantitation KW - Phosphorylation Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-153731 ER - TY - JOUR A1 - Eisele, Marion A1 - Boczor, Sigrid A1 - Rakebrandt, Anja A1 - Blozik, Eva A1 - Trader, Jens-Martin A1 - Stork, Stefan A1 - Herrmann-Lingen, Christoph A1 - Scherer, Martin T1 - General practitioners' awareness of depressive symptomatology is not associated with quality of life in heart failure patients - cross-sectional results of the observational RECODE-HF Study JF - BMC Family Practice N2 - Background Depression is a common comorbidity in patients with chronic heart failure (HF) and linked to a wider range of symptoms which, in turn, are linked to a decreased health-related quality of life (HRQOL). Treatment of depression might improve HRQOL but detecting depression is difficult due to the symptom overlap between HF and depression. Therefore, clinical guidelines recommend to routinely screen for depression in HF patients. No studies have so far investigated the treatment after getting aware of a depressive symptomatology and its correlation with HRQOL in primary care HF patients. Therefore, we examined the factors linked to depression treatment and those linked to HRQOL in HF patients. We hypothesized that GPs’ awareness of depressive symptomatology was associated with depression treatment and HRQOL in HF patients. Methods For this observational study, HF patients were recruited in primary care practices and filled out a questionnaire including PHQ-9 and HADS. A total of 574 patients screened positive for depressive symptomatology. Their GPs were interviewed by phone regarding the patients’ comorbidities and potential depression treatment. Descriptive and regression analysis were performed. Results GPs reported various types of depression treatments (including dialogue/counselling by the GP him/herself in 31.8% of the patients). The reported rates differed considerably between GP-reported initiated treatment and patient-reported utilised treatment regarding psychotherapy (16.4% vs. 9.5%) and pharmacotherapy (61.2% vs. 30.3%). The GPs' awareness of depressive symptomatology was significantly associated with the likelihood of receiving pharmacotherapy (OR 2.8; p < 0.001) but not psychotherapy. The patient’s HRQOL was not significantly associated with the GPs' awareness of depression. Conclusion GPs should be aware of the gap between GP-initiated and patient-utilised depression treatments in patients with chronic HF, which might lead to an undersupply of depression treatment. It remains to be investigated why GPs’ awareness of depressive symptomatology is not linked to patients’ HRQOL. We hypothesize that GPs are aware of cases with reduced HRQOL (which improves under depression treatment) and unaware of cases whose depression do not significantly impair HRQOL, resulting in comparable levels of HRQOL in both groups. This hypothesis needs to be further investigated. KW - Medicine KW - Depression KW - Heart failure KW - Recognition of depression KW - Quality of life KW - Depression treatment KW - Observational study KW - Primary care KW - Healthcare research KW - Depressive symptomatology Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-172445 VL - 18 ER - TY - JOUR A1 - Effenberger, Madlen A1 - Bommert, Kathryn S. A1 - Kunz, Viktoria A1 - Kruk, Jessica A1 - Leich, Ellen A1 - Rudelius, Martina A1 - Bargou, Ralf A1 - Bommert, Kurt T1 - Glutaminase inhibition in multiple myeloma induces apoptosis via MYC degradation JF - Oncotarget N2 - Multiple Myeloma (MM) is an incurable hematological malignancy affecting millions of people worldwide. As in all tumor cells both glucose and more recently glutamine have been identified as important for MM cellular metabolism, however there is some dispute as to the role of glutamine in MM cell survival. Here we show that the small molecule inhibitor compound 968 effectively inhibits glutaminase and that this inhibition induces apoptosis in both human multiple myeloma cell lines (HMCLs) and primary patient material. The HMCL U266 which does not express MYC was insensitive to both glutamine removal and compound 968, but ectopic expression of MYC imparted sensitivity. Finally, we show that glutamine depletion is reflected by rapid loss of MYC protein which is independent of MYC transcription and post translational modifications. However, MYC loss is dependent on proteasomal activity, and this loss was paralleled by an equally rapid induction of apoptosis. These findings are in contrast to those of glucose depletion which largely affected rates of proliferation in HMCLs, but had no effects on either MYC expression or viability. Therefore, inhibition of glutaminolysis is effective at inducing apoptosis and thus serves as a possible therapeutic target in MM. KW - Multiple Myeloma KW - glutaminase inhibition KW - apoptosis KW - MYC Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-170168 VL - 8 IS - 49 ER - TY - JOUR A1 - Dütting, Sebastian A1 - Gaits-Iacovoni, Frederique A1 - Stegner, David A1 - Popp, Michael A1 - Antkowiak, Adrien A1 - van Eeuwijk, Judith M.M. A1 - Nurden, Paquita A1 - Stritt, Simon A1 - Heib, Tobias A1 - Aurbach, Katja A1 - Angay, Oguzhan A1 - Cherpokova, Deya A1 - Heinz, Niels A1 - Baig, Ayesha A. A1 - Gorelashvili, Maximilian G. A1 - Gerner, Frank A1 - Heinze, Katrin G. A1 - Ware, Jerry A1 - Krohne, Georg A1 - Ruggeri, Zaverio M. A1 - Nurden, Alan T. A1 - Schulze, Harald A1 - Modlich, Ute A1 - Pleines, Irina A1 - Brakebusch, Cord A1 - Nieswandt, Bernhard T1 - A Cdc42/RhoA regulatory circuit downstream of glycoprotein Ib guides transendothelial platelet biogenesis JF - Nature Communications N2 - Blood platelets are produced by large bone marrow (BM) precursor cells, megakaryocytes (MKs), which extend cytoplasmic protrusions (proplatelets) into BM sinusoids. The molecular cues that control MK polarization towards sinusoids and limit transendothelial crossing to proplatelets remain unknown. Here, we show that the small GTPases Cdc42 and RhoA act as a regulatory circuit downstream of the MK-specific mechanoreceptor GPIb to coordinate polarized transendothelial platelet biogenesis. Functional deficiency of either GPIb or Cdc42 impairs transendothelial proplatelet formation. In the absence of RhoA, increased Cdc42 activity and MK hyperpolarization triggers GPIb-dependent transmigration of entire MKs into BM sinusoids. These findings position Cdc42 (go-signal) and RhoA (stop-signal) at the centre of a molecular checkpoint downstream of GPIb that controls transendothelial platelet biogenesis. Our results may open new avenues for the treatment of platelet production disorders and help to explain the thrombocytopenia in patients with Bernard–Soulier syndrome, a bleeding disorder caused by defects in GPIb-IX-V. KW - megakaryocytes KW - blood platelets KW - regulatory circuit downstream KW - glycoprotein Ib Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-170797 VL - 8 IS - 15838 ER - TY - JOUR A1 - Düking, Peter A1 - Holmberg, Hans-Christer A1 - Sperlich, Billy T1 - Instant Biofeedback Provided by Wearable Sensor Technology Can Help to Optimize Exercise and Prevent Injury and Overuse JF - Frontiers in Physiology KW - sports KW - training optimization KW - performance monitoring KW - health monitoring KW - technology KW - coaching Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-158044 VL - 8 IS - 167 ER - TY - JOUR A1 - Döhler, Anja A1 - Schneider, Theresa A1 - Eckert, Ina A1 - Ribechini, Eliana A1 - Andreas, Nico A1 - Riemann, Marc A1 - Reizis, Boris A1 - Weih, Falk A1 - Lutz, Manfred B. T1 - RelB\(^{+}\) Steady-State Migratory Dendritic Cells Control the Peripheral Pool of the Natural Foxp3\(^{+}\) Regulatory T Cells JF - Frontiers in Immunology N2 - Thymus-derived natural Foxp3\(^{+}\) CD4\(^{+}\) regulatory T cells (nTregs) play a key role in maintaining immune tolerance and preventing autoimmune disease. Several studies indicate that dendritic cells (DCs) are critically involved in the maintenance and proliferation of nTregs. However, the mechanisms how DCs manage to keep the peripheral pool at constant levels remain poorly understood. Here, we describe that the NF-κB/Rel family transcription factor RelB controls the frequencies of steady-state migratory DCs (ssmDCs) in peripheral lymph nodes and their numbers control peripheral nTreg homeostasis. DC-specific RelB depletion was investigated in CD11c-Cre × RelB\(^{fl/fl}\) mice (RelB\(^{DCko}\)), which showed normal frequencies of resident DCs in lymph nodes and spleen while the subsets of CD103\(^{-}\) Langerin\(^{-}\) dermal DCs (dDCs) and Langerhans cells but not CD103\(^{+}\) Langerin\(^{+}\) dDC of the ssmDCs in skin-draining lymph nodes were increased. Enhanced frequencies and proliferation rates were also observed for nTregs and a small population of CD4\(^{+}\) CD44\(^{high}\) CD25\(^{low}\) memory-like T cells (Tml). Interestingly, only the Tml but not DCs showed an increase in IL-2-producing capacity in lymph nodes of RelB\(^{DCko}\) mice. Blocking of IL-2 in vivo reduced the frequency of nTregs but increased the Tml frequencies, followed by a recovery of nTregs. Taken together, by employing RelB\(^{DCko}\) mice with increased frequencies of ssmDCs our data indicate a critical role for specific ssmDC subsets for the peripheral nTreg and IL-2\(^{+}\) Tml frequencies during homeostasis. KW - lymph nodes KW - dendritic cells KW - RelB KW - regulatory T cells KW - IL-2 Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-158121 VL - 8 IS - 726 ER - TY - JOUR A1 - Dziom, V. A1 - Shuvaev, A. A1 - Pimenov, A. A1 - Astakhov, G.V. A1 - Ames, C. A1 - Bendias, K. A1 - Böttcher, J. A1 - Tkachov, G. A1 - Hankiewicz, E.M. A1 - Brüne, C. A1 - Buhmann, H. A1 - Molenkamp, L.W. T1 - Observation of the universal magnetoelectric effect in a 3D topological insulator JF - Nature Communications N2 - The electrodynamics of topological insulators (TIs) is described by modified Maxwell’s equations, which contain additional terms that couple an electric field to a magnetization and a magnetic field to a polarization of the medium, such that the coupling coefficient is quantized in odd multiples of α/4π per surface. Here we report on the observation of this so-called topological magnetoelectric effect. We use monochromatic terahertz (THz) spectroscopy of TI structures equipped with a semitransparent gate to selectively address surface states. In high external magnetic fields, we observe a universal Faraday rotation angle equal to the fine structure constant α=e\(^{2}\)/2E\(_{0}\)hc (in SI units) when a linearly polarized THz radiation of a certain frequency passes through the two surfaces of a strained HgTe 3D TI. These experiments give insight into axion electrodynamics of TIs and may potentially be used for a metrological definition of the three basic physical constants. KW - topological matter KW - infrared spectroscopy KW - topological insulators KW - topological magnetoelectric effect Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-170875 VL - 8 IS - 15197 ER - TY - JOUR A1 - Drescher, Nora A1 - Klein, Alexandra-Maria A1 - Neumann, Peter A1 - Yañez, Orlando A1 - Leonhardt, Sara D. T1 - Inside Honeybee Hives: Impact of Natural Propolis on the Ectoparasitic Mite Varroa destructor and Viruses JF - Insects N2 - Social immunity is a key factor for honeybee health, including behavioral defense strategies such as the collective use of antimicrobial plant resins (propolis). While laboratory data repeatedly show significant propolis effects, field data are scarce, especially at the colony level. Here, we investigated whether propolis, as naturally deposited in the nests, can protect honeybees against ectoparasitic mites Varroa destructor and associated viruses, which are currently considered the most serious biological threat to European honeybee subspecies, Apis mellifera, globally. Propolis intake of 10 field colonies was manipulated by either reducing or adding freshly collected propolis. Mite infestations, titers of deformed wing virus (DWV) and sacbrood virus (SBV), resin intake, as well as colony strength were recorded monthly from July to September 2013. We additionally examined the effect of raw propolis volatiles on mite survival in laboratory assays. Our results showed no significant effects of adding or removing propolis on mite survival and infestation levels. However, in relation to V. destructor, DWV titers increased significantly less in colonies with added propolis than in propolis-removed colonies, whereas SBV titers were similar. Colonies with added propolis were also significantly stronger than propolis-removed colonies. These findings indicate that propolis may interfere with the dynamics of V. destructor-transmitted viruses, thereby further emphasizing the importance of propolis for honeybee health. KW - social immunity KW - Apis mellifera KW - deformed wing virus KW - plant-insect interactions KW - resin KW - sacbrood virus Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-171164 VL - 8 IS - 1 ER - TY - JOUR A1 - Drenckhahn, Detlev A1 - Baumgartner, Werner A1 - Zonneveld, Ben T1 - Different genome sizes of Western and Eastern Ficaria verna lineages shed light on steps of Ficaria evolution JF - Forum Geobotanicum N2 - The genus Ficaria is now considered to comprize eight Eurasian species. The most widespread European species is the tetraploid F. verna Huds. The present study provides evidence for the existence of two main lineages of F. verna that differ considerably in their genomic size by about 3 pg. A Western F. verna lineage west of river Rhine displays a mean genome size (2C-value) of 34.2 pg and is almost precisely codistributed with the diploid F. ambigua Boreau (20 pg) north of the Mediterranean. The remaining part of Europe appears to be occupied by the Eastern F. verna lineage solely (mean genome size of 31.3 pg) which codistributes in South-Eastern Europe with the diploid F. calthifolia Rchb. (15 pg). There is little overlap at the boundary of Western and Eastern F. verna lineages with the occurrence of a separate intermediate group in the Netherlands (mean genomic size of 33.2 pg) that appears to result from hybridization of both lineages. On the basis of these observations and further considerations we propose development of F. ambigua and F. calthifolia south of the Alps with subsequent divergence to populate their current Western and Eastern European ranges, respectively. The Western F. verna lineage is proposed to originate from autotetraploidization of F. ambigua (precursor) with moderate genomic downsizing and the Eastern F. verna lineage from auto¬tetraploidization of F. calthifolia (precursor). KW - Ficaria verna KW - Ficaria calthifolia KW - Ficaria ambigua KW - Durchflusscytometrie KW - Evolution KW - Genom Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-155061 UR - http://www.forum-geobotanicum.net/articles/vol_7-2016/drenckhahn-baumgartner-zonnefeld_ficaria_verna/drenckhahn-baumgartner-zonnefeld_ficaria_verna.pdf SN - 1867-9315 VL - 7 ER - TY - JOUR A1 - Dong, Hailong A1 - Kuzmanoski, Ana A1 - Wehner, Tobias A1 - Mueller-Buschbaum, Klaus A1 - Feldmann, Claus T1 - Microwave-assisted polyol synthesis of water dispersible red-emitting Eu\(^{3+}\)-modified carbon dots JF - Materials N2 - Eu\(^{3+}\)-modified carbon dots (C-dots), 3–5 nm in diameter, were prepared, functionalized, and stabilized via a one-pot polyol synthesis. The role of Eu\(^{2+}\)/Eu\(^{3+}\), the influence of O\(_2\) (oxidation) and H\(_2\)O (hydrolysis), as well as the impact of the heating procedure (conventional resistance heating and microwave (MW) heating) were explored. With the reducing conditions of the polyol at the elevated temperature of synthesis (200–230 °C), first of all, Eu\(^{2+}\) was obtained resulting in the blue emission of the C-dots. Subsequent to O\(_2\)-driven oxidation, Eu\(^{3+}\)-modified, red-emitting C-dots were realized. However, the Eu\(^{3+}\) emission is rapidly quenched by water for C-dots prepared via conventional resistance heating. In contrast to the hydroxyl functionalization of conventionally-heated C-dots, MW-heating results in a carboxylate functionalization of the C-dots. Carboxylate-coordinated Eu\(^{3+}\), however, turned out as highly stable even in water. Based on this fundamental understanding of synthesis and material, in sum, a one-pot polyol approach is established that results in H\(_2\)O-dispersable C-dots with intense red Eu\(^{3+}\)-line-type emission. KW - carbon dot KW - europium KW - microwave KW - polyol KW - surface conditioning Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-181674 VL - 10 ER - TY - JOUR A1 - Dombert, Benjamin A1 - Balk, Stefanie A1 - Lüningschrör, Patrick A1 - Moradi, Mehri A1 - Sivadasan, Rajeeve A1 - Saal-Bauernschubert, Lena A1 - Jablonka, Sibylle T1 - BDNF/trkB induction of calcium transients through Ca\(_{v}\)2.2 calcium channels in motoneurons corresponds to F-actin assembly and growth cone formation on β2-chain laminin (221) JF - Frontiers in Molecular Neuroscience N2 - Spontaneous Ca\(^{2+}\) transients and actin dynamics in primary motoneurons correspond to cellular differentiation such as axon elongation and growth cone formation. Brain-derived neurotrophic factor (BDNF) and its receptor trkB support both motoneuron survival and synaptic differentiation. However, in motoneurons effects of BDNF/trkB signaling on spontaneous Ca\(^{2+}\) influx and actin dynamics at axonal growth cones are not fully unraveled. In our study we addressed the question how neurotrophic factor signaling corresponds to cell autonomous excitability and growth cone formation. Primary motoneurons from mouse embryos were cultured on the synapse specific, β2-chain containing laminin isoform (221) regulating axon elongation through spontaneous Ca\(^{2+}\) transients that are in turn induced by enhanced clustering of N-type specific voltage-gated Ca\(^{2+}\) channels (Ca\(_{v}\)2.2) in axonal growth cones. TrkB-deficient (trkBTK\(^{-/-}\)) mouse motoneurons which express no full-length trkB receptor and wildtype motoneurons cultured without BDNF exhibited reduced spontaneous Ca\(^{2+}\) transients that corresponded to altered axon elongation and defects in growth cone morphology which was accompanied by changes in the local actin cytoskeleton. Vice versa, the acute application of BDNF resulted in the induction of spontaneous Ca\(^{2+}\) transients and Ca\(_{v}\)2.2 clustering in motor growth cones, as well as the activation of trkB downstream signaling cascades which promoted the stabilization of β-actin via the LIM kinase pathway and phosphorylation of profilin at Tyr129. Finally, we identified a mutual regulation of neuronal excitability and actin dynamics in axonal growth cones of embryonic motoneurons cultured on laminin-221/211. Impaired excitability resulted in dysregulated axon extension and local actin cytoskeleton, whereas upon β-actin knockdown Ca\(_{v}\)2.2 clustering was affected. We conclude from our data that in embryonic motoneurons BDNF/trkB signaling contributes to axon elongation and growth cone formation through changes in the local actin cytoskeleton accompanied by increased Ca\(_{v}\)2.2 clustering and local calcium transients. These findings may help to explore cellular mechanisms which might be dysregulated during maturation of embryonic motoneurons leading to motoneuron disease. KW - growth cone KW - BDNF KW - trkB KW - Ca\(_{v}\)2.2 KW - F-actin KW - motor axon Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-159094 VL - 10 IS - 346 ER - TY - JOUR A1 - Dick, Julia A1 - Krauß, Patrizia A1 - Hillenkamp, Jost A1 - Kohlmorgen, Britta A1 - Schoen, Christoph T1 - Postoperative Tropheryma whipplei endophthalmitis – a case report highlighting the additive value of molecular testing JF - JMM Case Reports N2 - Introduction. Tropheryma whipplei is the causative agent of Whipple’s disease. Gastrointestinal and lymphatic tissues are affected in the majority of cases, resulting in diarrhoea, malabsorption and fever. Here, we report a rare case of ocular manifestation in a patient lacking the typical Whipple symptoms. Case presentation. A 74-year-old Caucasian female presented with blurred vision in the right eye over a period of 1–2 months, accompanied by stinging pain and conjunctival hyperaemia for the last 2 days. Upon admission, visual acuity was hand motion in the affected eye. Ophthalmological examination showed typical signs of intraocular inflammation. Diagnostic and therapeutic pars plana vitrectomy including vitreous biopsy and intravitreal instillation of vancomycin and amikacin was performed within hours of initial presentation. Both microscopic analysis and microbial cultures of the vitreous biopsy remained negative for bacteria and fungi. The postoperative antibiotic regime included intravenous administration of ceftriaxone in combination with topical tobramycin and ofloxacin. Due to the empirical therapy the inflammation ceased and the patient was discharged after 5 days with cefpodoxime orally and local antibiotic and steroidal therapy. Meanwhile, the vitreous body had undergone testing by PCR for the eubacterial 16S rRNA gene, which was found to be positive. Analysis of the PCR product revealed a specific sequence of T. whipplei. Conclusion. In our patient, endophthalmitis was the first and only symptom of Morbus Whipple, while most patients with Whipple’s disease suffer from severe gastrointestinal symptoms. 16S rDNA PCR should be considered for any intraocular infection when microscopy and standard culture methods remain negative. KW - intravitreal vancomycin and amikacin KW - intravenous ceftriaxone KW - topic ofloxacin KW - Whipple's disease KW - endophthalmitis KW - Tropheryma whipplei KW - ocular infection KW - vitrectomy KW - oral cefpodoxime KW - oral doxycycline Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-158823 VL - 4 ER - TY - THES A1 - Dhara, Ayan T1 - Stimuli-Responsive Self-Assembly and Spatial Functionalization of Organic Cages Based on Tribenzotriquinacenes T1 - Stimuli-responsive Selbstorganisation und räumliche Funktionalisierung organischer Käfige auf Basis von Tribenzotriquinacenen N2 - Within this thesis, synthetic strategies for self-assembled organic cage compounds have been developed that allow for both stimuli-responsive control over assembly/disassembly processes and spatial control over functionalization. To purposefully operate the reversible assembly of organic cages, boron-nitrogen dative bonds have been exploited for the formation of a well-defined, discrete bipyramidal organic assembly in solution. Thermodynamic association equilibria for cage formation have been investigated by Isothermal Titration Calorimetry (ITC). Temperature-dependent NMR studies revealed a reversible cage opening upon heating and quantitative reassembly upon cooling. For the spatial functionalization of organic cages, two divergent molecular building units have been designed and synthesized, namely tribenzotriquinacene derivatives possessing a terminal alkyne moiety at the apical position and a meta-diboronic acid having a pyridyl group at the 2-position. Facile access to a variety of apically functionalized tribenzotriquinacenes has been illustrated by post-synthetic modifications at the terminal alkyne group by Sonogashira cross-coupling and azide-alkyne click reactions. Finally, these apically functionalized tribenzotriquinacene building blocks have been implemented into boronate ester-based organic cage compounds showing modular exohedral functionalities. N2 - Im Rahmen dieser Dissertation wurden Synthesiestrategien für selbstorganisierte organische Käfigstrukturen entwickelt, die eine stimuli-responsive Kontrolle über den Auf- und Abbau sowie eine räumliche Kontrolle über die Funktionalisierung dieser Nanostrukturen erlauben. Um den Assemblierungsprozess organischer Käfige gezielt zu steuern, wurden dative Bor-Stickstoff-Bindungen für die Bildung eines wohldefinierten, diskreten, bipyramidalen organischen Käfigs in Lösung eingesetzt. Die thermodynamischen Assoziationsleichgewichte für die Käfigbildung wurden durch isotherme Titrationskalorimetrie (ITC) tersucht. Temperaturabhängige NMR-Studien zeigten eine reversible Käfigöffnung beim Erwärmen und die quantitative Wiedergewinnung des Käfigs beim Abkühlen. Für die räumliche Funktionalisierung organischer Käfige wurden zwei divergente molekulare Bausteine entworfen und synthetisiert: Zum Einen Tribenzotriquinacen-Derivate die eine terminale Alkinfunktion an der apikalen Position aufweisen und zum Anderen eine meta-Diboronsäure mit einer Pyridylgruppe in 2-Position. Der einfache Zugang zu einer Vielzahl an apikal funktionalisierten Tribenzotriquinacenen wurde durch postsynthetische Modifizierungen der terminalen Alkineinheit durch Sonogashira-Kreuzkupplungen und Azid-Alkin-Klick-Reaktionen veranschaulicht. Schließlich wurden diese apikal funktionalisierten Tribenzotriquinacen-Bausteine in organische Boronatester-Käfige mit modularer exohedraler Funktionalität implementiert. KW - Selbstorganisation KW - Bor-Stickstoff-Verbindungen KW - Käfigverbindungen KW - Self-assembly KW - Selbstassemblierung KW - Cage KW - Boron-Nitrogen Dative Bond Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-154762 ER - TY - THES A1 - Deppermann, Carsten T1 - The role of platelet granules in thrombosis, hemostasis, stroke and inflammation T1 - Zur Rolle der Thrombozytengranula in Thrombose, Hämostase, Schlaganfall und Entzündung N2 - Platelets are small anucleate cell fragments derived from bone marrow megakaryocytes (MKs) and are important players in hemostasis and thrombosis. Platelet granules store factors which are released upon activation. There are three major types of platelet granules: alpha-granules, dense granules and lysosomes. While dense granules contain non-proteinacious factors which support platelet aggregation and adhesion, platelet alpha-granules contain more than 300 different proteins involved in various functions such as inflammation, wound healing and the maintenanceof vascular integrity, however, their functional significance in vivo remains unknown. This thesis summarizes analyses using three mouse models generated to investigate the role of platelet granules in thrombosis, hemostasis, stroke and inflammation. Unc13d-/- mice displayed defective platelet dense granule secretion, which resulted in abrogated thrombosis and hemostasis. Remarkably, Munc13-4-deficient mice were profoundly protected from infarct progression following transient middle cerebral artery occlusion (tMCAO) and this was not associated with increased intracranial bleeding indicating an essential involvementof dense granule secretion in infarct progression but not intracranial hemostasis during acute stroke with obvious therapeutic implications. In the second part of this thesis, the role of platelet alpha-granules was investigated using the Nbeal2-/- mouse. Mutations in NBEAL2 have been linked to the gray platelet syndrome (GPS), a rare inherited bleeding disorder. Nbeal2-/- mice displayed the characteristics of human GPS, with defective alpha-granule biogenesis in MKs and their absence from platelets. Nbeal2-deficiency did not affect MK differentiation and proplatelet formation in vitro or platelet life span in vivo. Nbeal2-/- platelets displayed impaired adhesion, aggregation, and coagulant activity ex vivo that translated into defective arterial thrombus formation and protection from thrombo-inflammatory brain infarction in vivo. In a model of skin wound repair, Nbeal2-/- mice exhibited impaired development of functional granulation tissue due to severely reduced differentiation of myofibroblasts. In the third part, the effects of combined deficiency of alpha- and dense granule secretion were analyzed using Unc13d-/-/Nbeal2-/- mice. Platelets of these mice showed impaired aggregation and adhesion to collagen under flow ex vivo, which translated into infinite tail bleeding times and severely defective arterial thrombus formation in vivo. When subjected to in vivo models of skin or lung inflammation, the double mutant mice showed no signs of hemorrhage. In contrast, lack of platelet granule release resulted in impaired vascular integrity in the ischemic brain following tMCAO leading to increased mortality. This indicates that while defective dense granule secretion or the paucity of alpha-granules alone have no effect on vascular integrity after stroke, the combination of both impairs vascular integrity and causes an increase in mortality. N2 - Thrombozyten sind kleine, kernlose Zellfragmente, die von Megakaryozyten (MKs) im Knochenmark gebildet werden und eine zentrale Rolle in Thrombose und Hämostase spielen. Thrombozytengranula speichern Faktoren, die nach Thrombozytenaktivierung freigesetzt werden. Die drei wichtigsten Thrombozytengranula sind alpha- und dichte Granula, sowie Lysosomen. Während dichte Granula vor allem anorganische Faktoren enthalten, welche die Thrombozytenaktivierung und -aggregation fördern, speichern alpha-Granula mehr als 300 verschiedene Proteine mit einer Vielzahl an Funktionen. Sie sind beispielsweise an Entzündungsprozessen, Wundheilung und der Aufrechterhaltung vaskulärer Integrität beteiligt. Die funktionelle Signifikanz dieser Faktoren, insbesondere in vivo, blieb bisher allerdings ungeklärt. Diese Doktorarbeit beschreibt die Analyse der Rolle von Thrombozytengranula in Thrombose, Hämostase, Schlaganfall und Entzündung unter Verwendung von drei Knockout-Mauslinien. Unc13d-/- Mäuse dienten als Modell, um die Rolle der dichten Granulasekretion in Thrombose, Hämostase, Schlaganfall und der Aufrechterhaltung der vaskulären Integrität nach Thromboinflammation zu untersuchen. Die fehlende Freisetzung des Inhalts dichter Granula aus Thrombozyten dieser Mäuse führte zu defekter Thrombose und Hämostase. Unc13d-/- Mäuse zeigten deutlich kleinere Infarkte im tMCAO (transient middle cerebral artery occlusion)-Modell des ischämischen Schlaganfalls. Gleichzeitig wurde jedoch keine erhöhte Blutungsneigung im Gehirn nach Schlaganfall festgestellt. Dies deutet auf eine Schlüsselrolle der Sekretion dichter Granula in der Infarktentwicklung hin, die jedoch nicht die intrakranielle H¨amostase w¨ahrend des akuten Schlaganfalls beeinflusst. Der zweite Teil dieser Doktorarbeit behandelt die Rolle von alpha-Granula unter Verwendung der Nbeal2-/- Maus. Vor Kurzem wurde gezeigt, dass Mutationen im NBEAL2-Gen das Gray Platelet Syndrome (GPS) hervorrufen. Das GPS ist eine seltene erbliche Blutungskrankheit mit Makrothrombozytopenie, defekter alpha-Granulabiogenese in MKs und dem Fehlen thrombozytärer alpha-Granula. Nbeal2-Defizienz führte zu unveränderter MK-Differenzierung, Proplättchenbildung in vitro und Thrombozytenlebensdauer in vivo. Nbeal2-defiziente Thrombozyten zeigten jedoch verringerte Adhäsion, Aggregation und Koagulation ex vivo, welche zu einer gestörten arteriellen Thrombusbildung und Schutz vor thromboinflammatorischem Schlaganfall nach zerebraler Ischämie führte. In einem Wundheilungsmodell der Haut zeigte sich bei Nbeal2-defizienten Mäusen eine verringerte Bildung von Granulationsgewebe während des Heilungsvorgangs. Die Ursache hierfür lag in der reduzierten Myofibroblastendifferenzierung aufgrund fehlender alpha-Granulaausschüttung. Zusammengenommen zeigen diese Ergebnisse, dass alpha-Granulabestandteile nicht nur für Thrombose und Hämostase, sondern auch für akute thromboinflammatorische Krankheitszust¨ande und Geweberegeneration nach Verletzung essentiell sind. Im dritten Teil dieser Arbeit wurde der Effekt einer kombinierten Sekretionsdefizienz von alpha- und dichten Granula mithilfe von Unc13d-/-/Nbeal2-/- Mäusen untersucht. Thrombozyten dieser Mäuse zeigten verringerte Aggregation und Adhäsion an Kollagen unter Flussbedingungen ex vivo, sowie massiv verlängerte Blutungszeiten und defekte Thrombusbildung in vivo. Die defekte Granulafreisetzung in Unc13d-/-/Nbeal2-/- Mäusen führte zum Zusammenbruch der vaskulären Integrität im tMCAO-Modell des ischämischen Schlaganfalls und zu einer erhöhten Mortalitätsrate. Im Gegensatz dazu zeigten die doppeldefizienten Mäuse in in vivo Modellen der Haut- oder Lungenentzündung keine Einblutungen. Dies deutet darauf hin, dass die fehlende Sekretion dichter Granula oder die Abwesenheit von alpha-Granula für sich genommen keinen Einfluss auf die Aufrechterhaltung der vaskulären Integrität nach Schlaganfall hat. Die Kombination beider Defekte führt jedoch zum Zusammenbruch der zerebrovaskulären Integrität und erhöhter Mortalität nach Schlaganfall. KW - Thrombozyten KW - Schlaganfall KW - Entzündung KW - Platelet granules KW - Thrombosis KW - Hemostasis KW - Stroke KW - Inflammation Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-121010 ER - TY - JOUR A1 - Denner, Ansgar A1 - Lang, Jean-Nicolas A1 - Uccirati, Sandro T1 - NLO electroweak corrections in extended Higgs sectors with RECOLA2 JF - Journal of High Energy Physics N2 - We present the computer code RECOLA2 along with the first NLO electroweak corrections to Higgs production in vector-boson fusion and updated results for Higgs strahlung in the Two-Higgs-Doublet Model and Higgs-Singlet extension of the Standard Model. A fully automated procedure for the generation of tree-level and one-loop matrix elements in general models, including renormalization, is presented. We discuss the application of the Background-Field Method to the extended models. Numerical results for NLO electroweak cross sections are presented for different renormalization schemes in the Two-Higgs-Doublet Model and the Higgs-Singlet extension of the Standard Model. Finally, we present distributions for the production of a heavy Higgs boson. KW - NLO computations KW - phenomenological models KW - Higgs boson Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-170673 VL - 7 IS - 87 ER - TY - JOUR A1 - Denner, Ansgar A1 - Lang, Jean-Nicolas A1 - Pellen, Mathieu A1 - Uccirati, Sandro T1 - Higgs production in association with off-shell top-antitop pairs at NLO EW and QCD at the LHC JF - Journal of High Energy Physics N2 - We present NLO electroweak corrections to Higgs production in association with off-shell top-antitop quark pairs. The full process pp → e +νeµ −ν¯µbb¯H is considered, and hence all interference, off-shell, and non-resonant contributions are taken into account. The electroweak corrections turn out to be below one per cent for the integrated cross section but can exceed 10% in certain phase-space regions. In addition to its phenomenological relevance, the computation constitutes a major technical achievement as the full NLO virtual corrections involving up to 9-point functions have been computed exactly. The results of the full computation are supported by two calculations in the double-pole approximation. These also allow to infer the effect of off-shell contributions and emphasise their importance especially for the run II of the LHC. Finally, we present combined predictions featuring both NLO electroweak and QCD corrections in a common set-up that will help the experimental collaborations in their quest of precisely measuring the aforementioned process. KW - high energy physics KW - NLO computations Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-171871 IS - 2 ER - TY - JOUR A1 - Degen, Tobias A1 - Hovestadt, Thomas A1 - Mitesser, Oliver A1 - Hölker, Franz T1 - Altered sex-specific mortality and female mating success: ecological effects and evolutionary responses JF - Ecosphere N2 - Theory predicts that males and females should often join the mating pool at different times (sexual dimorphism in timing of emergence [SDT]) as the degree of SDT affects female mating success. We utilize an analytical model to explore (1) how important SDT is for female mating success, (2) how mating success might change if either sex's mortality (abruptly) increases, and (3) to what degree evolutionary responses in SDT may be able to mitigate the consequences of such mortality increase. Increasing male pre‐mating mortality has a non‐linear effect on the fraction of females mated: The effect is initially weak, but at some critical level a further increase in male mortality has a stronger effect than a similar increase in female mortality. Such a change is expected to impose selection for reduced SDT. Increasing mortality during the mating season has always a stronger effect on female mating success if the mortality affects the sex that emerges first. This bias results from the fact that enhancing mortality of the earlier emerging sex reduces female–male encounter rates. However, an evolutionary response in SDT may effectively mitigate such consequences. Further, if considered independently for females and males, the predicted evolutionary response in SDT could be quite dissimilar. The difference between female and male evolutionary response in SDT leads to marked differences in the fraction of fertilized females under certain conditions. Our model may provide general guidelines for improving harvesting of populations, conservation management of rare species under altered environmental conditions, or maintaining long‐term efficiency of pest‐control measures. KW - evolutionary response KW - sexual dimorphism in timing KW - sex-specific mortality KW - reproductive asynchrony KW - mating success Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-170953 VL - 8 IS - 5 ER - TY - JOUR A1 - Deacon, R. S. A1 - Wiedenmann, J. A1 - Bocquillon, E. A1 - Domínguez, F. A1 - Klapwijk, T. M. A1 - Leubner, P. A1 - Brüne, C. A1 - Hankiewicz, E. M. A1 - Tarucha, S. A1 - Ishibashi, K. A1 - Buhmann, H. A1 - Molenkamp, L. W. T1 - Josephson Radiation from Gapless Andreev Bound States in HgTe-Based Topological Junctions JF - Physical Review X N2 - Frequency analysis of the rf emission of oscillating Josephson supercurrent is a powerful passive way of probing properties of topological Josephson junctions. In particular, measurements of the Josephson emission enable the detection of topological gapless Andreev bound states that give rise to emission at half the Josephson frequency f\(_{J}\) rather than conventional emission at f\(_{J}\). Here, we report direct measurement of rf emission spectra on Josephson junctions made of HgTe-based gate-tunable topological weak links. The emission spectra exhibit a clear signal at half the Josephson frequency f\(_{J}\)/2. The linewidths of emission lines indicate a coherence time of 0.3–4 ns for the f\(_{J}\)/2 line, much shorter than for the f\(_{J}\) line (3–4 ns). These observations strongly point towards the presence of topological gapless Andreev bound states and pave the way for a future HgTe-based platform for topological quantum computation. KW - condensed matter physics KW - Josephson junctions KW - topological materials KW - gapless Andreev bound states Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-170969 VL - 7 IS - 021011 ER - TY - JOUR A1 - Danner, Nadja A1 - Keller, Alexander A1 - Härtel, Stephan A1 - Steffan-Dewenter, Ingolf T1 - Honey bee foraging ecology: Season but not landscape diversity shapes the amount and diversity of collected pollen JF - PLoS ONE N2 - The availability of pollen in agricultural landscapes is essential for the successful growth and reproduction of honey bee colonies (Apis mellifera L.). The quantity and diversity of collected pollen can influence the growth and health of honey bee colonies, but little is known about the influence of landscape structure on pollen diet. In a field experiment, we rotated 16 honey bee colonies across 16 agricultural landscapes, used traps to collect samples of collected pollen and observed intra-colonial dance communication to gain information about foraging distances. DNA metabarcoding was applied to analyze mixed pollen samples. Neither the amount of collected pollen nor pollen diversity was related to landscape diversity. However, we found a strong seasonal variation in the amount and diversity of collected pollen in all sites independent of landscape diversity. The observed increase in foraging distances with decreasing landscape diversity suggests that honey bees compensated for lower landscape diversity by increasing their pollen foraging range in order to maintain pollen amount and diversity. Our results underscore the importance of a diverse pollen diet for honey bee colonies. Agri-environmental schemes aiming to support pollinators should focus on possible spatial and temporal gaps in pollen availability and diversity in agricultural landscapes. KW - honey bees KW - pollen KW - season KW - foraging Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-170424 VL - 12 IS - 8 ER - TY - THES A1 - Danner, Nadja T1 - Honey bee foraging in agricultural landscapes T1 - Sammelverhalten von Honigbienen in der Agrarlandschaft N2 - 1. Today honey bee colonies face a wide range of challenges in modern agricultural landscapes which entails the need for a comprehensive investigation of honey bees in a landscape context and the assessment of environmental risks. Within this dissertation the pollen foraging of honey bee colonies is studied in different agricultural landscapes to gain insight into the use of pollen resources and the influence of landscape structure across the season. General suggestions for landscape management to support honey bees and other pollinators are derived. 2. Decoding of waggle dances and a subsequent spatial foraging analysis are used as methods in Chapters 4 and 5 to study honey bee colonies in agricultural landscapes. The recently developed metabarcoding of mixed pollen samples was applied for the first time in honey bee foraging ecology and allowed for a detailed analysis of pollen, that was trapped from honey bees in front hive entrances (Chapter 6). 3. Pollen identification through molecular sequencing and DNA barcoding has been proposed as an alternative approach to light microscopy, which still is a tedious and error-prone task. In this study we assessed mixed pollen probes through next-generation sequencing and developed a bioinformatic workflow to analyse these high-throughput data with a newly created reference database. To evaluate the feasibility, we compared results from classical identification based on light microscopy from the same samples with our sequencing results. Abundance estimations from sequencing data were significantly correlated with counted abundances through light microscopy. Next-generation sequencing thus presents a useful and efficient workflow to identify pollen at the genus and species level without requiring specialized palynological expert knowledge. 4. During maize flowering, four observation hives were placed in and rotated between 11 landscapes covering a gradient in maize acreage. A higher foraging frequency on maize fields compared to other landuse types showed that maize is an intensively used pollen resource for honey bee colonies. Mean foraging distances were significantly shorter for maize pollen than for other pollen origins, indicating that effort is put into collecting a diverse pollen diet. The percentage of maize pollen foragers did not increase with maize acreage in the landscape and was not reduced by grassland area as an alternative pollen resource. Our findings allow estimating the distance-related exposure risk of honey bee colonies to pollen from surrounding maize fields treated with systemic insecticides. 5. It is unknown how an increasing area of mass-flowering crops like oilseed rape (OSR) or a decrease of semi-natural habitats (SNH) change the temporal and spatial availability of pollen resources for honey bee colonies, and thus foraging distances and frequency in different habitat types. Sixteen observation hives were placed in and rotated between 16 agricultural landscapes with independent gradients of OSR and SNH area within 2 km to analyze foraging distances and frequencies. SNH and OSR reduced foraging distance at different spatial scales and depending on season, with possible benefits for the performance of honey bee colonies. Frequency of pollen foragers per habitat type was equally high for SNH, grassland and OSR fields, but lower for other crops and forest. In landscapes with a small proportion of SNH a significantly higher density of pollen foragers on SNH was observed, indicating the limitation of pollen resources in simple agricultural landscapes and the importance of SNH. 6. Quantity and diversity of collected pollen can influence the growth and health of honey bee colonies, but little is known about the influence of landscape structure on pollen diet. In a field experiment we rotated 16 honey bee colonies across 16 agricultural landscapes (see also Chapter 5), used traps to get samples of collected pollen and observed the intra-colonial dance communication to gain information about foraging distances. Neither the amount of collected pollen nor pollen diversity were related to landscape diversity. The revealed increase of foraging distances with decreasing landscape diversity suggests that honey bees compensate for a lower landscape diversity by increasing their pollen foraging range in order to maintain pollen amount and diversity. 7. Our results show the importance of diverse pollen resources for honey bee colonies in agricultural landscapes. Beside the risk of exposure to pesticides honey bees face the risk of nutritional deficiency with implications for their health. By modifying landscape composition and therefore availability of resources we are able to contribute to the wellbeing of honey bees. Agri-environmental schemes aiming to support pollinators should focus on possible spatial and temporal gaps in pollen availability and diversity in agricultural landscapes. N2 - 1. Honigbienen stehen heutzutage vor einer Vielzahl von Herausforderungen in der modernen Agrarlandschaft, was umfassende Untersuchungen von Honigbienen im Landschafskontext erforderlich macht. Im Rahmen dieser Arbeit wurde das Pollensammeln von Honigbienenvölkern in verschiedenen Agrarlandschaften studiert, um Einblick in die Nutzung von Pollenressourcen und auf den Einfluss der Landschaftsstruktur zu gewinnen. 2. Die Dekodierung von Schwänzeltänzen und eine anschließende räumliche Analyse des Sammelverhaltens werden als Methoden in den Kapiteln 4 und 5 eingesetzt, um Bienenvölker in Agrarlandschaften zu untersuchen. Das kürzlich entwickelte Metabarcoding von gemischten Pollenproben wurde zum ersten Mal in der Honigbienenökologie angewandt und ermöglichte eine detaillierte Analyse von Pollenproben, die per Pollenfallen vor den Stockeingängen gesammelt wurden (Kapitel 6). 3. Pollenbestimmung durch molekulare Sequenzierung und DNA Barcoding wurde als Alternative zur Lichtmikroskopie vorgeschlagen, die immer noch sehr mühsam und fehlerbehaftet ist. In dieser Studie bestimmten wir gemischte Pollenproben durch Next-Generation-Sequenzierung und entwickelten einen bioinformatischen Arbeitsablauf um diese Hochdurchsatz-Daten mit einer neu kreierten Referenzdatanbank zu analysieren. Um die Durchführbarkeit zu evaluieren verglichen wir Ergebnisse aus der klassischen Identifizierung via Lichtmikroskopie derselben Proben mit unseren Sequenzier-Ergebnissen. Häufigkeitsschätzungen auf Basis der Sequenzierdaten waren signifikant mit den gezählten Häufigkeiten via Lichtmikroskopie korreliert. Next-Generation-Sequenzierung stellt daher einen nützlichen und effizienten Arbeitsablauf dar, um Pollen auf dem Gattungs- und Artniveau zu bestimmen ohne spezielles palynologisches Expertenwissen zu benötigen. 4. Während der Maisblüte wurden vier Beobachtungsstöcke in 11 Landschaften mit einem Maisflächengradienten platziert und zwischen diesen rotiert. Maisfelder wurden intensiver genutzt als Flächen anderer Landnutzungstypen. Die mittleren Sammeldistanzen waren signifikant niedriger für Maispollen als Pollen anderer Herkunft, was darauf hinweist, dass Aufwand in das Sammeln einer diversen Pollendiät gesetzt wird. Der Anteil an Maispollensammlerinnen stieg nicht mit der Maisanbaufläche in der Landschaft und wurde nicht durch Grünlandfläche als alternative Pollenressource reduziert. Unsere Ergebnisse ermöglichen die Schätzung des entfernungsbezogenen Expositionsrisikos von Honigbienenvölker auf Pollen aus den umliegenden Maisfeldern, die mit systemischen Insektiziden behandelt werden. 5. Es ist nicht bekannt, wie eine Zunahme von Massentrachten wie Raps (OSR) oder eine Abnahme von halbnatürlichen Habitaten (SNH) die zeitliche und räumliche Verfügbarkeit von Pollenressourcen für die Honigbienen, und damit Sammeldistanzen und -frequenzen in verschiedenen Lebensraumtypen verändert. Sechzehn Beobachtungsstöcke wurden in 16 Agrarlandschaften mit unabhängigen Gradienten an OSR- und SNH-Fläche innerhalb von 2 km platziert und regelmäßig rotiert, um Sammeldistanzen und -frequenzen zu analysieren. SNH und OSR reduzierten die Sammeldistanzen auf verschiedenen räumlichen Skalen und je nach Saison, mit möglichen Vorteilen für die Leistungsfähigkeit von Bienenvölkern. Die Häufigkeit der Pollensammler pro Habitattyp war gleich hoch für SNH, Grünland und OSR, aber niedriger für andere Kulturen und Wald. In Landschaften mit einem kleinen Anteil von SNH wurde eine deutlich höhere Dichte von Pollensammlerinnen auf SNH beobachtet, was auf die Begrenzung der Pollenressourcen in einfachen Agrarlandschaften und die Bedeutung von SNH hinweist. 6. Menge und Diversität des gesammelten Pollens können das Wachstum und die Gesundheit von Honigbienenvölkern beeinflussen, aber es ist wenig über den Einfluss der Landschaftsstruktur auf die Pollendiät bekannt. In einem Feldexperiment rotierten wir 16 Honigbienenkolonien über 16 Agrarlandschaften (siehe auch Kapitel 5), nutzten Pollenfallen um Proben des gesammelten Pollens zu nehmen und beobachteten die intrakoloniale Tanzkommunikation, um Informationen über die Sammeldistanzen zu erhalten. Weder Pollenmenge noch -diversität waren von der Landschaftsdiversität abhängig. Der offenbarte Anstieg von Sammeldistanzen mit abnehmender Landschaftsdiversität legt nahe, dass Honigbienen durch die Erweiterung des Pollensammelbereichs eine niedrigere Landschaftsdiversität kompensieren, um Pollenmenge und -diversität zu erhalten. 7. Unsere Ergebnisse zeigen die Bedeutung eines diversen Pollenangebots für Bienenvölker in der Agrarlandschaft. Neben dem Risiko einer Exposition gegenüber Pestiziden, stehen Bienenvölker vor der Gefahr von Mangelernährung mit Auswirkungen auf ihre Gesundheit. Durch eine Änderung der Landschaftzusammensetzung und damit der Verfügbarkeit von Ressourcen können wir zum Wohlergehen der Honigbienen beitragen. Agrarumweltmaßnahmen mit dem Ziel Bestäuber zu unterstützen, sollten sich auf mögliche räumliche und zeitliche Lücken in der Pollenverfügbarkeit und Vielfalt in der Agrarlandschaft konzentrieren. KW - Apis mellifera KW - Zea mays KW - Resource Use KW - Exposure Risk KW - Oilseed Rape KW - foraging distances KW - Sammeldistanzen KW - semi-natural habitat KW - halbnatürliche Habitate KW - next-generation sequencing KW - pollen KW - Pollen KW - Next-Generation Sequenzierung KW - Landschaftsstruktur KW - landscape structure Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-139322 ER - TY - JOUR A1 - Dainese, Matteo A1 - Schneider, Gudrun A1 - Krauss, Jochen A1 - Steffan-Dewenter, Ingolf T1 - Complementarity among natural enemies enhances pest suppression JF - Scientific Reports N2 - Natural enemies have been shown to be effective agents for controlling insect pests in crops. However, it remains unclear how different natural enemy guilds contribute to the regulation of pests and how this might be modulated by landscape context. In a field exclusion experiment in oilseed rape (OSR), we found that parasitoids and ground-dwelling predators acted in a complementary way to suppress pollen beetles, suggesting that pest control by multiple enemies attacking a pest during different periods of its occurrence in the field improves biological control efficacy. The density of pollen beetle significantly decreased with an increased proportion of non-crop habitats in the landscape. Parasitism had a strong effect on pollen beetle numbers in landscapes with a low or intermediate proportion of non-crop habitats, but not in complex landscapes. Our results underline the importance of different natural enemy guilds to pest regulation in crops, and demonstrate how biological control can be strengthened by complementarity among natural enemies. The optimization of natural pest control by adoption of specific management practices at local and landscape scales, such as establishing non-crop areas, low-impact tillage, and temporal crop rotation, could significantly reduce dependence on pesticides and foster yield stability through ecological intensification in agriculture. KW - ecosystem services KW - agroecology Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-158621 VL - 7 ER - TY - JOUR A1 - Costea, Paul I. A1 - Coelho, Louis Pedro A1 - Sunagawa, Shinichi A1 - Munch, Robin A1 - Huerta-Cepas, Jaime A1 - Forslund, Kristoffer A1 - Hildebrand, Falk A1 - Kushugulova, Almagul A1 - Zeller, Georg A1 - Bork, Peer T1 - Subspecies in the global human gut microbiome JF - Molecular Systems Biology N2 - Population genomics of prokaryotes has been studied in depth in only a small number of primarily pathogenic bacteria, as genome sequences of isolates of diverse origin are lacking for most species. Here, we conducted a large‐scale survey of population structure in prevalent human gut microbial species, sampled from their natural environment, with a culture‐independent metagenomic approach. We examined the variation landscape of 71 species in 2,144 human fecal metagenomes and found that in 44 of these, accounting for 72% of the total assigned microbial abundance, single‐nucleotide variation clearly indicates the existence of sub‐populations (here termed subspecies). A single subspecies (per species) usually dominates within each host, as expected from ecological theory. At the global scale, geographic distributions of subspecies differ between phyla, with Firmicutes subspecies being significantly more geographically restricted. To investigate the functional significance of the delineated subspecies, we identified genes that consistently distinguish them in a manner that is independent of reference genomes. We further associated these subspecies‐specific genes with properties of the microbial community and the host. For example, two of the three Eubacterium rectale subspecies consistently harbor an accessory pro‐inflammatory flagellum operon that is associated with lower gut community diversity, higher host BMI, and higher blood fasting insulin levels. Using an additional 676 human oral samples, we further demonstrate the existence of niche specialized subspecies in the different parts of the oral cavity. Taken together, we provide evidence for subspecies in the majority of abundant gut prokaryotes, leading to a better functional and ecological understanding of the human gut microbiome in conjunction with its host. KW - biology KW - genetic variation KW - metagenomics KW - microbiome KW - population structure KW - prokaryotic subspecies Y1 - 2017 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-172674 VL - 13 IS - 12 ER -