TY - THES A1 - Zenk, Markus T1 - On Numerical Methods for Astrophysical Applications T1 - Über numerische Methoden für astrophysikalische Anwendungen N2 - Diese Arbeit befasst sich mit der Approximation der Lösungen von Modellen zur Beschreibung des Strömungsverhaltens in Atmosphären. Im Speziellen umfassen die hier behandelten Modelle die kompressiblen Euler Gleichungen der Gasdynamik mit einem Quellterm bezüglich der Gravitation und die Flachwassergleichungen mit einem nicht konstanten Bodenprofil. Verschiedene Methoden wurden bereits entwickelt um die Lösungen dieser Gleichungen zu approximieren. Im Speziellen geht diese Arbeit auf die Approximation von Lösungen nahe des Gleichgewichts und, im Falle der Euler Gleichungen, bei kleinen Mach Zahlen ein. Die meisten numerischen Methoden haben die Eigenschaft, dass die Qualität der Approximation sich mit der Anzahl der Freiheitsgrade verbessert. In der Praxis werden deswegen diese numerischen Methoden auf großen Computern implementiert um eine möglichst hohe Approximationsgüte zu erreichen. Jedoch sind auch manchmal diese großen Maschinen nicht ausreichend, um die gewünschte Qualität zu erreichen. Das Hauptaugenmerk dieser Arbeit ist darauf gerichtet, die Qualität der Approximation bei gleicher Anzahl von Freiheitsgrade zu verbessern. Diese Arbeit ist im Zusammenhang einer Kollaboration zwischen Prof. Klingenberg des Mathemaitschen Instituts in Würzburg und Prof. Röpke des Astrophysikalischen Instituts in Würzburg entstanden. Das Ziel dieser Kollaboration ist es, Methoden zur Berechnung von stellarer Atmosphären zu entwickeln. In dieser Arbeit werden vor allem zwei Problemstellungen behandelt. Die erste Problemstellung bezieht sich auf die akkurate Approximation des Quellterms, was zu den so genannten well-balanced Schemata führt. Diese erlauben genaue Approximationen von Lösungen nahe des Gleichgewichts. Die zweite Problemstellung bezieht sich auf die Approximation von Strömungen bei kleinen Mach Zahlen. Es ist bekannt, dass Lösungen der kompressiblen Euler Gleichungen zu Lösungen der inkompressiblen Euler Gleichungen konvergieren, wenn die Mach Zahl gegen null geht. Klassische numerische Schemata zeigen ein stark diffusives Verhalten bei kleinen Mach Zahlen. Das hier entwickelte Schema fällt in die Kategorie der asymptotic preserving Schematas, d.h. das numerische Schema ist auf einem diskrete Level kompatibel mit dem auf dem Kontinuum gezeigten verhalten. Zusätzlich wird gezeigt, dass die Diffusion des hier entwickelten Schemas unabhängig von der Mach Zahl ist. In Kapitel 3 wird ein HLL approximativer Riemann Löser für die Approximation der Lösungen der Flachwassergleichungen mit einem nicht konstanten Bodenprofil angewendet und ein well-balanced Schema entwickelt. Die meisten well-balanced Schemata für die Flachwassergleichungen behandeln nur den Fall eines Fluids im Ruhezustand, die so genannten Lake at Rest Lösungen. Hier wird ein Schema entwickelt, welches sich mit allen Gleichgewichten befasst. Zudem wird eine zweiter Ordnung Methode entwickelt, welche im Gegensatz zu anderen in der Literatur nicht auf einem iterativen Verfahren basiert. Numerische Experimente werden durchgeführt um die Vorteile des neuen Verfahrens zu zeigen. In Kapitel 4 wird ein Suliciu Relaxations Löser angepasst um die hydrostatischen Gleichgewichte der Euler Gleichungen mit einem Gravitationspotential aufzulösen. Die Gleichungen der hydrostatischen Gleichgewichte sind unterbestimmt und lassen deshalb keine Eindeutigen Lösungen zu. Es wird jedoch gezeigt, dass das neue Schema für eine große Klasse dieser Lösungen die well-balanced Eigenschaft besitzt. Für bestimmte Klassen werden Quadraturformeln zur Approximation des Quellterms entwickelt. Es wird auch gezeigt, dass das Schema robust, d.h. es erhält die Positivität der Masse und Energie, und stabil bezüglich der Entropieungleichung ist. Die numerischen Experimente konzentrieren sich vor allem auf den Einfluss der Quadraturformeln auf die well-balanced Eigenschaften. In Kapitel 5 wird ein Suliciu Relaxations Schema angepasst für Simulationen im Bereich kleiner Mach Zahlen. Es wird gezeigt, dass das neue Schema asymptotic preserving und die Diffusion kontrolliert ist. Zudem wird gezeigt, dass das Schema für bestimmte Parameter robust ist. Eine Stabilität wird aus einer Chapman-Enskog Analyse abgeleitet. Resultate numerische Experimente werden gezeigt um die Vorteile des neuen Verfahrens zu zeigen. In Kapitel 6 werden die Schemata aus den Kapiteln 4 und 5 kombiniert um das Verhalten des numerischen Schemas bei Flüssen mit kleiner Mach Zahl in durch die Gravitation geschichteten Atmosphären zu untersuchen. Es wird gezeigt, dass das Schema well-balanced ist. Die Robustheit und die Stabilität werden analog zu Kapitel 5 behandelt. Auch hier werden numerische Tests durchgeführt. Es zeigt sich, dass das neu entwickelte Schema in der Lage ist, die Dynamiken besser Aufzulösen als vor der Anpassung. Das Kapitel 7 beschäftigt sich mit der Entwicklung eines multidimensionalen Schemas basierend auf der Suliciu Relaxation. Jedoch ist die Arbeit an diesem Ansatz noch nicht beendet und numerische Resultate können nicht präsentiert werden. Es wird aufgezeigt, wo sich die Schwächen dieses Ansatzes befinden und weiterer Entwicklungsbedarf besteht. N2 - This work is concerned with the numerical approximation of solutions to models that are used to describe atmospheric or oceanographic flows. In particular, this work concen- trates on the approximation of the Shallow Water equations with bottom topography and the compressible Euler equations with a gravitational potential. Numerous methods have been developed to approximate solutions of these models. Of specific interest here are the approximations of near equilibrium solutions and, in the case of the Euler equations, the low Mach number flow regime. It is inherent in most of the numerical methods that the quality of the approximation increases with the number of degrees of freedom that are used. Therefore, these schemes are often run in parallel on big computers to achieve the best pos- sible approximation. However, even on those big machines, the desired accuracy can not be achieved by the given maximal number of degrees of freedom that these machines allow. The main focus in this work therefore lies in the development of numerical schemes that give better resolution of the resulting dynamics on the same number of degrees of freedom, compared to classical schemes. This work is the result of a cooperation of Prof. Klingenberg of the Institute of Mathe- matics in Wu¨rzburg and Prof. R¨opke of the Astrophysical Institute in Wu¨rzburg. The aim of this collaboration is the development of methods to compute stellar atmospheres. Two main challenges are tackled in this work. First, the accurate treatment of source terms in the numerical scheme. This leads to the so called well-balanced schemes. They allow for an accurate approximation of near equilibrium dynamics. The second challenge is the approx- imation of flows in the low Mach number regime. It is known that the compressible Euler equations tend towards the incompressible Euler equations when the Mach number tends to zero. Classical schemes often show excessive diffusion in that flow regime. The here devel- oped scheme falls into the category of an asymptotic preserving scheme, i.e. the numerical scheme reflects the behavior that is computed on the continuous equations. Moreover, it is shown that the diffusion of the numerical scheme is independent of the Mach number. In chapter 3, an HLL-type approximate Riemann solver is adapted for simulations of the Shallow Water equations with bottom topography to develop a well-balanced scheme. In the literature, most schemes only tackle the equilibria when the fluid is at rest, the so called Lake at rest solutions. Here a scheme is developed to accurately capture all the equilibria of the Shallow Water equations. Moreover, in contrast to other works, a second order extension is proposed, that does not rely on an iterative scheme inside the reconstruction procedure, leading to a more efficient scheme. In chapter 4, a Suliciu relaxation scheme is adapted for the resolution of hydrostatic equilibria of the Euler equations with a gravitational potential. The hydrostatic relations are underdetermined and therefore the solutions to that equations are not unique. However, the scheme is shown to be well-balanced for a wide class of hydrostatic equilibria. For specific classes, some quadrature rules are computed to ensure the exact well-balanced property. Moreover, the scheme is shown to be robust, i.e. it preserves the positivity of mass and energy, and stable with respect to the entropy. Numerical results are presented in order to investigate the impact of the different quadrature rules on the well-balanced property. In chapter 5, a Suliciu relaxation scheme is adapted for the simulations of low Mach number flows. The scheme is shown to be asymptotic preserving and not suffering from excessive diffusion in the low Mach number regime. Moreover, it is shown to be robust under certain parameter combinations and to be stable from an Chapman-Enskog analysis. Numerical results are presented in order to show the advantages of the new approach. In chapter 6, the schemes developed in the chapters 4 and 5 are combined in order to investigate the performance of the numerical scheme in the low Mach number regime in a gravitational stratified atmosphere. The scheme is shown the be well-balanced, robust and stable with respect to a Chapman-Enskog analysis. Numerical tests are presented to show the advantage of the newly proposed method over the classical scheme. In chapter 7, some remarks on an alternative way to tackle multidimensional simulations are presented. However no numerical simulations are performed and it is shown why further research on the suggested approach is necessary. KW - Strömung KW - Numerical Methods KW - Hyperbolic Partial Differential Equations KW - Well-Balanced KW - Asymptotic Preserving KW - Atmosphäre KW - Mathematisches Modell KW - PDE Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-162669 ER - TY - THES A1 - Nguyen-Ngoc, Anh T1 - On Performance Assessment of Control Mechanisms and Virtual Components in SDN-based Networks T1 - Zur Leistungsbewertung von Regelungsmechanismen und virtuellen Komponenten in SDN-basierten Netzwerken N2 - This dissertation focuses on the performance evaluation of all components of Software Defined Networking (SDN) networks and covers whole their architecture. First, the isolation between virtual networks sharing the same physical resources is investigated with SDN switches of several vendors. Then, influence factors on the isolation are identified and evaluated. Second, the impact of control mechanisms on the performance of the data plane is examined through the flow rule installation time of SDN switches with different controllers. It is shown that both hardware-specific and controller instance have a specific influence on the installation time. Finally, several traffic flow monitoring methods of an SDN controller are investigated and a new monitoring approach is developed and evaluated. It is confirmed that the proposed method allows monitoring of particular flows as well as consumes fewer resources than the standard approach. Based on findings in this thesis, on the one hand, controller developers can refer to the work related to the control plane, such as flow monitoring or flow rule installation, to improve the performance of their applications. On the other hand, network administrators can apply the presented methods to select a suitable combination of controller and switches in their SDN networks, based on their performance requirements N2 - Diese Dissertation konzentriert sich auf die Leistungsbewertung aller Komponenten von SDN-Netzwerken (Software Defined Networking) und deckt deren gesamte Architektur ab. Zuerst wird die Isolation zwischen virtuellen Netzwerken, die dieselben physischen Ressourcen teilen, mit SDN-Switches verschiedener Hersteller untersucht. Dann werden Einflussfaktoren auf die Isolation identifiziert und ausgewertet. Anschließen wird die Auswirkung von Kontrollmechanismen auf die Leistung der Datenebene durch die Flussregel-Installationszeit von SDN-Switches mit unterschiedlichen Controllern untersucht. Es wird gezeigt, dass sowohl Hardware-spezifische als auch Controller-Instanz einen spezifischen Einfluss auf die Installationszeit haben. Abschließend werden verschiedene Methoden der Verkehrsflussüberwachung eines SDN-Controllers untersucht und ein neuer Monitoringansatz entwickelt und evaluiert. Es wird bestätigt, dass die vorgeschlagene Methode die Überwachung bestimmter Flüsse ermöglicht und weniger Ressourcen verbraucht als der Standardansatz. Basierend auf den Ergebnissen dieser Arbeit können Controller-Entwickler einerseits die Arbeiten zur Steuerungsebene, wie zum Beispiel die Flussüberwachung oder die Flussregelinstallation, zur Verbesserung der Leistung ihrer Anwendungen verwenden. Auf der anderen Seite können Netzwerkadministratoren die vorgestellte Methode anwenden, um basierend auf ihren Leistungsanforderungen eine geeignete Kombination aus Controller und Switches in ihren SDN-Netzwerken auszuwählen. T3 - Würzburger Beiträge zur Leistungsbewertung Verteilter Systeme - 02/18 KW - Leistungsbewertung KW - SDN KW - Netzwerk KW - OpenFlow KW - Software Defined Networking KW - SDN Switches KW - Performance Evaluation KW - SDN Controllers Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-169328 SN - 1432-8801 ER - TY - JOUR A1 - Lichtenstein, Leonie A1 - Grübel, Kornelia A1 - Spaethe, Johannes T1 - Opsin expression patterns coincide with photoreceptor development during pupal development in the honey bee, Apis mellifera JF - BMC Developmental Biology N2 - Background: The compound eyes of insects allow them to catch photons and convert the energy into electric signals. All compound eyes consist of numerous ommatidia, each comprising a fixed number of photoreceptors. Different ommatidial types are characterized by a specific set of photoreceptors differing in spectral sensitivity. In honey bees, males and females possess different ommatidial types forming distinct retinal mosaics. However, data are lacking on retinal ontogeny and the mechanisms by which the eyes are patterned. In this study, we investigated the intrinsic temporal and circadian expression patterns of the opsins that give rise to the ultraviolet, blue and green sensitive photoreceptors, as well as the morphological maturation of the retina during pupal development of honey bees. Results: qPCR and histological labeling revealed that temporal opsin mRNA expression differs between sexes and correlates with rhabdom elongation during photoreceptor development. In the first half of the pupal stage, when the rhabdoms of the photoreceptors are still short, worker and (dorsal) drone retinae exhibit similar expression patterns with relatively high levels of UV (UVop) and only marginal levels of blue (BLop) and green (Lop1) opsin mRNA. In the second half of pupation, when photoreceptors and rhabdoms elongate, opsin expression in workers becomes dominated by Lop1 mRNA. In contrast, the dorsal drone eye shows high expression levels of UVop and BLop mRNA, whereas Lop1 mRNA level decreases. Interestingly, opsin expression levels increase up to 22-fold during early adult life. We also found evidence that opsin expression in adult bees is under the control of the endogenous clock. Conclusions: Our data indicate that the formation of the sex-specific retinal composition of photoreceptors takes place during the second half of the pupal development, and that opsin mRNA expression levels continue to increase in young bees, which stands in contrast to Drosophila, where the highest expression levels are found during the late pupal stage and remain constant in adults. From an evolutionary perspective, we hypothesize that the delayed retinal maturation during the early adult phase is linked to the delayed transition from indoor to outdoor activities in bees, when vision becomes important. KW - insect vision KW - photoreceptor KW - spectral sensitivity KW - visual pigments KW - behavioral transition Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-175665 VL - 18 IS - 1 ER - TY - JOUR A1 - Dittmann, Jonas A1 - Balles, Andreas A1 - Zabler, Simon T1 - Optimization based evaluation of grating interferometric phase stepping series and analysis of mechanical setup instabilities JF - Journal of Imaging N2 - The diffraction contrast modalities accessible by X-ray grating interferometers are not imaged directly but have to be inferred from sine-like signal variations occurring in a series of images acquired at varying relative positions of the interferometer’s gratings. The absolute spatial translations involved in the acquisition of these phase stepping series usually lie in the range of only a few hundred nanometers, wherefore positioning errors as small as 10 nm will already translate into signal uncertainties of 1–10% in the final images if not accounted for. Classically, the relative grating positions in the phase stepping series are considered input parameters to the analysis and are, for the Fast Fourier Transform that is typically employed, required to be equidistantly distributed over multiples of the gratings’ period. In the following, a fast converging optimization scheme is presented simultaneously determining the phase stepping curves’ parameters as well as the actually performed motions of the stepped grating, including also erroneous rotational motions which are commonly neglected. While the correction of solely the translational errors along the stepping direction is found to be sufficient with regard to the reduction of image artifacts, the possibility to also detect minute rotations about all axes proves to be a valuable tool for system calibration and monitoring. The simplicity of the provided algorithm, in particular when only considering translational errors, makes it well suitable as a standard evaluation procedure also for large image series. KW - X-ray imaging KW - Talbot–Lau interferometer KW - grating interferometer KW - phase contrast imaging KW - darkfield imaging KW - phase stepping KW - optimization Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-197723 SN - 2313-433X VL - 4 IS - 6 ER - TY - JOUR A1 - Malsch, Carolin A1 - Liman, Thomas A1 - Wiedmann, Silke A1 - Siegerink, Bob A1 - Georgakis, Marios K. A1 - Tiedt, Steffen A1 - Endres, Matthias A1 - Heuschmann, Peter U. T1 - Outcome after stroke attributable to baseline factors—the PROSpective Cohort with Incident Stroke (PROSCIS) JF - PLoS ONE N2 - Background The impact of risk factors on poor outcome after ischemic stroke is well known, but estimating the amount of poor outcome attributable to single factors is challenging in presence of multimorbidity. We aim to compare population attributable risk estimates obtained from different statistical approaches regarding their consistency. We use a real-life data set from the PROSCIS study to identify predictors for mortality and functional impairment one year after first-ever ischemic stroke and quantify their contribution to poor outcome using population attributable risks. Methods The PROSpective Cohort with Incident Stroke (PROSCIS) is a prospective observational hospital-based cohort study of patients after first-ever stroke conducted independently in Berlin (PROSCIS-B) and Munich (PROSCIS-M). The association of baseline factors with poor outcome one year after stroke in PROSCIS-B was analysed using multiple logistic regression analysis and population attributable risks were calculated, which were estimated using sequential population attributable risk based on a multiple generalized additive regression model, doubly robust estimation, as well as using average sequential population attributable risk. Findings were reproduced in an independent validation sample from PROSCIS-M. Results Out of 507 patients with available outcome information after 12 months in PROSCIS-B, 20.5% suffered from poor outcome. Factors associated with poor outcome were age, pre-stroke physical disability, stroke severity (NIHSS), education, and diabetes mellitus. The order of risk factors ranked by magnitudes of population attributable risk was almost similar for all methods, but population attributable risk estimates varied markedly between the methods. In PROSCIS-M, incidence of poor outcome and distribution of baseline parameters were comparable. The multiple logistic regression model could be reproduced for all predictors, except pre-stroke physical disability. Similar to PROSCIS-B, the order of risk factors ranked by magnitudes of population attributable risk was almost similar for all methods, but magnitudes of population attributable risk differed markedly between the methods. Conclusions Ranking of risk factors by population impact is not affected by the different statistical approaches. Thus, for a rational decision on which risk factor to target in disease interventions, population attributable risk is a supportive tool. However, population attributable risk estimates are difficult to interpret and are not comparable when they origin from studies applying different methodology. The predictors for poor outcome identified in PROSCIS-B have a relevant impact on mortality and functional impairment one year after first-ever ischemic stroke. KW - ischemic stroke KW - stroke KW - physical activity KW - diabetes mellitus KW - regression analysis KW - hemorrhagic stroke KW - atrial fibrillation KW - hypertension Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-177342 VL - 13 IS - 9 ER - TY - JOUR A1 - Schenk, Mariela A1 - Mitesser, Oliver A1 - Hovestadt, Thomas A1 - Holzschuh, Andrea T1 - Overwintering temperature and body condition shift emergence dates of spring-emerging solitary bees JF - PeerJ N2 - Solitary bees in seasonal environments must align their life-cycles with favorable environmental conditions and resources; the timing of their emergence is highly fitness relevant. In several bee species, overwintering temperature influences both emergence date and body weight at emergence. High variability in emergence dates among specimens overwintering at the same temperatures suggests that the timing of emergence also depends on individual body conditions. However, possible causes for this variability, such as individual differences in body size or weight, have been rarely studied. In a climate chamber experiment using two spring-emerging mason bees (Osmia cornuta and O. bicornis), we investigated the relationship between temperature, emergence date, body weight, and body size, the last of which is not affected by overwintering temperature. Our study showed that body weight declined during hibernation more strongly in warm than in cold overwintering temperatures. Although bees emerged earlier in warm than in cold overwintering temperatures, at the time of emergence, bees in warm overwintering temperatures had lower body weights than bees in cold overwintering temperatures (exception of male O. cornuta). Among specimens that experienced the same overwintering temperatures, small and light bees emerged later than their larger and heavier conspecifics. Using a simple mechanistic model we demonstrated that spring-emerging solitary bees use a strategic approach and emerge at a date that is most promising for their individual fitness expectations. Our results suggest that warmer overwintering temperatures reduce bee fitness by causing a decrease in body weight at emergence. We showed furthermore that in order to adjust their emergence dates, bees use not only temperature but also their individual body condition as triggers. This may explain differing responses to climate warming within and among bee populations and may have consequences for bee-plant interactions as well as for the persistence of bee populations under climate change. KW - Wild bees KW - Timing KW - Fitness KW - Hibernation KW - Climate change KW - Mechanistic model KW - Osmia KW - Body weight KW - Body size KW - Pollinators Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-228544 VL - 6 ER - TY - THES A1 - Martin, Corinna T1 - Oxidized phospholipids and their role in neuronal excitation of primary sensory neurons T1 - Oxidierte Phospholipide und ihre Funktion in neuronaler Erregbarkeit in primären sensorischen Neuronen N2 - Recently, our research group identified in a study novel proalgesic targets in acute and chronic inflammatory pain: oxidized phospholipids (OxPL). OxPL, endogenous chemical irritants, are generated in inflamed tissue and mediate their pain-inducing function by activating the transient receptor potential channels TRPA1 and TRPV1. Both channels are sensors for chemical stimuli on primary afferent nociceptors and are involved in nociception. Here, with the help of calcium imaging and whole cell patch clamp recording techniques, it was found that OxPL metabolites acutely activate TRPA1 and TRPV1 ion channels to excite DRG neurons. OxPL species act predominantly via TRPA1 ion channels and mediate long- lasting non-selective inward currents. Notably, one pure OxPL compound, PGPC, activated a TRPA1 mutant lacking the binding site for electrophilic agonists, suggesting that OxPL activate TRP ion channels by an indirect mechanical mechanism. Next, it was investigated how OxPL influence the excitability of primary sensory neurons. Acute stimulation and fast calcium imaging revealed that OxPL elicit repetitive, spike-like calcium transients in small- diameter DRG neurons, which were fully blocked by antagonists against TRPA1/V1 and N- type voltage-gated calcium channels. In search of a mechanism that drives repetitive spiking of DRG neurons, it was asked whether NaV1.9, a voltage-gated sodium channel involved in subthreshold excitability and nociception, is needed to trigger OxPL-induced calcium spikes and action potential firing. In electrophysiological recordings, both the combination of local application of OxPL and current injection were required to efficiently increase the action potential (AP) frequency of small-diameter sensory neurons. However, no difference was monitored in the resting membrane potential or OxPL-induced AP firing rate between wt and NaV1.9-deficient small diameter DRG neurons. To see whether NaV1.9 needs inflammatory conditions to be integrated in the OxPL-induced excitation cascade, sensory neurons were pretreated with a mixture of inflammatory mediators before OxPL application. Under inflammatory conditions both the AP and the calcium-spike frequency were drastically enhanced in response to an acute OxPL stimulus. Notably, this potentiation of OxPL stimuli was entirely lost in NaV1.9 deficient sensory neurons. Under inflammatory conditions, the resting membrane potential of NaV1.9-deficient neurons was more negative compared to wt neurons, suggesting that NaV1.9 shows resting activity only under inflammatory conditions. In conclusion, OxPL are endogenous irritants that induce excitability in small-diameter DRG neurons, a cellular model of nociceptors, via TRP activation. This effect is potentiated under inflammatory conditions. Under these conditions, NaV1.9 functions as essential mediator as it eases the initiation of excitability after OxPL stimulation. As mutants in the human NaV1.9 mediate an enhanced or painless perception, this study provides new insight into the mechanism on how NaV1.9 amplifies stimuli of endogenous irritants under inflammatory conditions. N2 - Im Zuge einer Studie über Entzündungsschmerz hat unsere Arbeitsgruppe oxidierte Phospholipide (OxPL) als neue endogene Entzündungsmediatoren entdeckt. Diese werden im entzündeten Gewebe produziert und vermitteln ihre schmerzinduzierende Funktion durch Aktivierung von sogenannten transienten Rezeptorpotentialkanälen TRPA1 und TRPV1. Beide Ionenkanäle werden von afferenten Nozizeptoren exprimiert und sind Sensoren für chemische Reize. In dieser Arbeit wurde mithilfe von Calcium Imaging und elektrophysiologischen Messungen gezeigt, dass oxidierte Phospholipide TRPA1 und TRPV1 aktivieren und eine erhöhte Erregbarkeit in sensorischen Neuronen der Hinterwurzelganglien (DRG Neuronen) auslösen. Hierbei aktivieren oxidierte Phospholipide TRPA1 stärker als TRPV1 und induzieren langanhaltende, nicht-selektive Einwärtsströme. Ein Bestandteil von OxPL, das Oxidationsprodukt PGPC, aktiviert zudem eine Mutante von TRPA1, die nicht die Bindungsstelle für elektrophile Agonisten trägt. Dies lässt vermuten, dass OxPL die TRP Kanäle über einen indirekten, mechanischen Mechanismus aktivieren. Als nächstes wurde der Einfluss von OxPL auf die Erregbarkeit von sensorischen Neuronen untersucht. Schnelles Calcium Imaging zeigte, dass eine akute Stimulation mit OxPL zu wiederholten spike-ähnlichen Signalen in DRG Neuronen führt. Diese waren nur in Neuronen mit kleinem Durchmessern zu finden und deren Aktivierung konnte sowohl durch Antagonisten gegen TRPA1/V1 als auch mit Inhibitoren spannungsgesteuerter N-Typ Kalziumkänale blockiert werden. Elektrophysiologische Untersuchungen zeigten, dass eine Strominjektion mit gleichzeitiger lokaler Applikation von OxPL zur Erhöhung der Aktionspotentialsrate in kleinen DRG Neuronen führt. Deshalb wurde untersucht, ob der spannungsgesteuerte Natriumkanal NaV1.9 für die durch OxPL induzierten Kalziumspikes und Aktionspotentiale verantwortlich ist, da er an der unterschwelligen Erregbarkeit von Neuronen beteiligt ist. Es konnte jedoch kein Unterschied beim Ruhemembranpotential oder der OxPL induzierten Aktionspotentialsrate zwischen den wt und NaV1.9-defizienten (NaV1.9 KO) Neuronen festgestellt werden. Um zu verstehen, ob NaV1.9 unter inflammatorischen Bedingungen in die OxPL induzierte Erregungskaskade integriert wird, wurden die sensorischen Neurone mit inflammatorischen Mediatoren vorbehandelt und anschließend mit OxPL stimuliert. Dies führte sowohl zu einer stark erhöhten Kalziumspike- als auch Aktionspotentialfrequenz im wt, während die NaV1.9 KO Neurone sich wie unter nicht inflammatorischen Bedingungen verhielten. Unter inflammatorischen Bedingungen konnte zudem eine Erniedrigung des Ruhemembranpotentials im Vergleich zwischen NaV1.9 KO und wt Neuronen beobachtet werden. Das lässt vermuten, dass NaV1.9 seine Ruheaktivität nur unter Entzündungsbedingungen zeigt. In dieser Arbeit wurde gezeigt, dass OxPL endogene Agonisten sind, die kleine DRG Neurone, ein zelluläres Model für Nozizeptoren, über TRPA1 und TRPV1 aktivieren. Dieser Effekt wird unter Entzündungsbedingungen verstärkt. Hierbei spielt der unterschwellig aktive Kanal NaV1.9 eine essentielle Vermittlerrolle, indem er die Auslösung von Aktionspotentialen nach einem OxPL Stimulus erleichtert. Da Mutationen im menschlichen Na1.9 Kanal zu einem erhöhten oder sogar fehlendem Schmerzempfinden führen können, gibt diese Studie einen neuen Einblick in den Mechanismus mit dem NaV1.9 Stimuli endogener, reizauslösender Substanzen unter Entzündungsbedingungen amplifiziert. KW - inflammatory pain KW - Entzündungsschmerz KW - NaV1.9. oxidized phospholipids KW - TRPA1 KW - TRPV1 KW - DRG KW - oxidierte Phospholipide KW - Entzündung KW - Schmerz KW - Phospholipide Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-160665 ER - TY - JOUR A1 - Hefner, Jochen A1 - Berberich, Sara A1 - Lanvers, Elena A1 - Sanning, Maria A1 - Steimer, Ann-Kathrin A1 - Kunzmann, Volker T1 - Patient-doctor relationship and adherence to capecitabine in outpatients of a German comprehensive cancer center JF - Patient Preference and Adherence N2 - Purpose: The prescribing of oral chemotherapy agents has introduced the new challenge of ensuring patients’ adherence to therapy. Aspects of a close patient–doctor relationship are reported to be correlated with adherence to oral anticancer drugs, but data on capecitabine are scarce. Patients and methods: Sixty-four outpatients with a diagnosis of cancer and prescribed capecitabine were recruited from a German Comprehensive Cancer Center. We used the Patient–Doctor Relationship Questionnaire (PDRQ-9), the Medical Adherence Rating Scale (MARS), the Beliefs about Medicines Questionnaire (BMQ), and the Satisfaction with Information about Medicines Scale (SIMS) to assess patients’ perceptions and behavior. Medical data were extracted from the charts. Results: Non-adherence was reported by 20% of the 64 participants. The perceived quality of the patient–doctor relationship was high in general, but it did not emerge as a predictor of adherence in our survey (odds ratio [OR]=0.915, P=0.162, 95% CI=0.808–1.036). However, beliefs about medicine (OR=1.268, P<0.002; 95% CI=1.090–1.475) as well as satisfaction with information about medicine (OR=1.252, P<0.040, 95% CI=1.010–1.551) were predictors of adherence and the quality of the patient–doctor relationship was correlated with both variables (r=0.373, P=0.002 for SIMS sum score; r=0.263, P=0.036 for BMQ necessity/concern difference). Overall, adherence to capecitabine was high with a conviction that the therapy is necessary. However, concerns were expressed regarding the long-term effect of capecitabine use. Patients have unmet information needs regarding interactions of capecitabine with other medicines and the impairment of their intimate life. Conclusions: In order to ensure adherence to capecitabine, our results seem to encourage the default use of modern and perhaps more impersonal means of information brokerage (eg, email, internet). However, the contents of some of patients’ informational needs as well as the associations of patients’ beliefs and satisfaction about the information received suggest a benefit from a trustful patient–doctor relationship. KW - oral anticancer drugs KW - patient-doctor-relationship KW - capecitabine Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-177143 VL - 12 ER - TY - JOUR A1 - Sommerfeld, Andreas A1 - Senf, Cornelius A1 - Buma, Brian A1 - D'Amato, Anthony W. A1 - Després, Tiphaine A1 - Díaz-Hormazábal, Ignacio A1 - Fraver, Shawn A1 - Frelich, Lee E. A1 - Gutiérrez, Álvaro G. A1 - Hart, Sarah J. A1 - Harvey, Brian J. A1 - He, Hong S. A1 - Hlásny, Tomáš A1 - Holz, Andrés A1 - Kitzberger, Thomas A1 - Kulakowski, Dominik A1 - Lindenmayer, David A1 - Mori, Akira S. A1 - Müller, Jörg A1 - Paritsis, Juan A1 - Perry, George L. W. A1 - Stephens, Scott L. A1 - Svoboda, Miroslav A1 - Turner, Monica G. A1 - Veblen, Thomas T. A1 - Seidl, Rupert T1 - Patterns and drivers of recent disturbances across the temperate forest biome JF - Nature Communications N2 - Increasing evidence indicates that forest disturbances are changing in response to global change, yet local variability in disturbance remains high. We quantified this considerable variability and analyzed whether recent disturbance episodes around the globe were consistently driven by climate, and if human influence modulates patterns of forest disturbance. We combined remote sensing data on recent (2001–2014) disturbances with in-depth local information for 50 protected landscapes and their surroundings across the temperate biome. Disturbance patterns are highly variable, and shaped by variation in disturbance agents and traits of prevailing tree species. However, high disturbance activity is consistently linked to warmer and drier than average conditions across the globe. Disturbances in protected areas are smaller and more complex in shape compared to their surroundings affected by human land use. This signal disappears in areas with high recent natural disturbance activity, underlining the potential of climate-mediated disturbance to transform forest landscapes. KW - forest ecology KW - forestry Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-239157 VL - 9 ER - TY - JOUR A1 - Sathyanarayana, Vijaya A1 - Lee, Beth A1 - Wright, Neville B. A1 - Santos, Rui A1 - Bonney, Denise A1 - Wynn, Robert A1 - Patel, Leena A1 - Chandler, Kate A1 - Cheesman, Ed A1 - Schindler, Detlev A1 - Webb, Nicholas J. A. A1 - Meyer, Stefan T1 - Patterns and frequency of renal abnormalities in Fanconi anaemia: implications for long-term management JF - Pediatric Nephrology N2 - Fanconi anaemia (FA) is an inherited disease with bone marrow failure, variable congenital and developmental abnormalities, and cancer predisposition. With improved survival, non-haematological manifestations of FA become increasingly important for long-term management. While renal abnormalities are recognized, detailed data on patterns and frequency and implications for long-term management are sparse. We reviewed clinical course and imaging findings of FA patients with respect to renal complications in our centre over a 25-year period to formulate some practical suggestions for guidelines for management of renal problems associated with FA. Thirty patients including four sibling sets were reviewed. On imaging, 14 had evidence of anatomical abnormalities of the kidneys. Two cases with severe phenotype, including renal abnormalities, had chronic kidney disease (CKD) at diagnosis. Haematopoietic stem cell transplantation was complicated by significant acute kidney injury (AKI) in three cases. In three patients, there was CKD at long-term follow-up. All patients had normal blood pressure. Evaluation of renal anatomy with ultrasound imaging is important at diagnostic workup of FA. While CKD is uncommon at diagnosis, our data suggests that the incidence of CKD increases with age, in particular after haematopoietic stem cell transplantation. Monitoring of renal function is essential for management of FA. Based on these long-term clinical observations, we formulate some practical guidelines for assessment and management of renal abnormalities in FA. KW - Fanconi anaemia KW - Renal abnormalities KW - Long-term follow-up Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-227400 VL - 33 IS - 9 ER - TY - JOUR A1 - Prusty, Bhupesh K. A1 - Chowdhury, Suvagata R. A1 - Gulve, Nitish A1 - Rudel, Thomas T1 - Peptidase Inhibitor 15 (PI15) Regulates Chlamydial CPAF Activity JF - Frontiers in Cellular and Infection Microbiology N2 - Obligate intracellular pathogenic Chlamydia trachomatis express several serine proteases whose roles in chlamydial development and pathogenicity are not completely understood. The chlamydial protease CPAF is expressed during the replicative phase of the chlamydial developmental cycle and is secreted into the lumen of the Chlamydia-containing vacuole called inclusion. How the secreted protease is activated in the inclusion lumen is currently not fully understood. We have identified human serine peptidase inhibitor PI15 as a potential host factor involved in the regulation of CPAF activation. Silencing expression as well as over expression of PI15 affected normal development of Chlamydia. PI15 was transported into the chlamydial inclusion lumen where it co-localized with CPAF aggregates. We show that PI15 binds to the CPAF zymogen and potentially induces CPAF protease activity at low concentrations. However, at high concentrations PI15 inhibits CPAF activity possibly by blocking its protease domain. Our findings shed light on a new aspect of chlamydial host co-evolution which involves the recruitment of host cell proteins into the inclusion to control the activation of bacterial proteases like CPAF that are important for the normal development of Chlamydia. KW - chlamydia KW - CPAF activation KW - peptidase inhibitor PI15 KW - chlamydial inclusion KW - chlamydia serine proteases Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-196918 SN - 2235-2988 VL - 8 IS - 183 ER - TY - JOUR A1 - Lapa, Constantin A1 - Kircher, Malte A1 - Hänscheid, Heribert A1 - Schirbel, Andreas A1 - Grigoleit, Götz Ulrich A1 - Klinker, Erdwine A1 - Böck, Markus A1 - Samnick, Samuel A1 - Pelzer, Theo A1 - Buck, Andreas K T1 - Peptide receptor radionuclide therapy as a new tool in treatment-refractory sarcoidosis - initial experience in two patients JF - Theranostics N2 - Sarcoidosis is a multisystem granulomatous disorder of unknown etiology that can involve virtually all organ systems. Whereas most patients present without symptoms, progressive and disabling organ failure can occur in up to 10% of subjects. Somatostatin receptor (SSTR)-directed peptide receptor radionuclide therapy (PRRT) has recently received market authorization for treatment of SSTR-positive neuroendocrine tumors. Methods: We describe the first case series comprising two patients with refractory multi-organ involvement of sarcoidosis who received 4 cycles of PRRT. Results: PRRT was well-tolerated without any acute adverse effects. No relevant toxicities could be recorded during follow-up. Therapy resulted in partial response accompanied by a pronounced reduction in pain (patient #1) and stable disease regarding morphology as well as disease activity (patient #2), respectively. Conclusion: Peptide receptor radionuclide therapy in sarcoidosis is feasible and might be a new valuable tool in patients with otherwise treatment-refractory disease. Given the long experience with and good tolerability of PRRT, further evaluation of this new treatment option for otherwise treatment-refractory sarcoidosis in larger patient cohorts is warranted. KW - peptide receptor KW - PRRT KW - sarcoidosis KW - somatostatin receptors KW - radionuclide therapy Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-158983 VL - 8 IS - 3 ER - TY - JOUR A1 - Welz, M. A1 - Eickhoff, S. A1 - Abdullah, Z. A1 - Trebicka, J. A1 - Gartlan, K. H. A1 - Spicer, J. A. A1 - Demetris, A. J. A1 - Akhlaghi, H. A1 - Anton, M. A1 - Manske, K. A1 - Zehn, D. A1 - Nieswandt, B. A1 - Kurts, C. A1 - Trapani, J. A. A1 - Knolle, P. A1 - Wohlleber, D. A1 - Kastenmüller, W. T1 - Perforin inhibition protects from lethal endothelial damage during fulminant viral hepatitis JF - Nature Communications N2 - CD8 T cells protect the liver against viral infection, but can also cause severe liver damage that may even lead to organ failure. Given the lack of mechanistic insights and specific treatment options in patients with acute fulminant hepatitis, we develop a mouse model reflecting a severe acute virus-induced CD8 T cell-mediated hepatitis. Here we show that antigen-specific CD8 T cells induce liver damage in a perforin-dependent manner, yet liver failure is not caused by effector responses targeting virus-infected hepatocytes alone. Additionally, CD8 T cell mediated elimination of cross-presenting liver sinusoidal endothelial cells causes endothelial damage that leads to a dramatically impaired sinusoidal perfusion and indirectly to hepatocyte death. With the identification of perforin-mediated killing as a critical pathophysiologic mechanism of liver failure and the protective function of a new class of perforin inhibitor, our study opens new potential therapeutic angles for fulminant viral hepatitis. KW - cytotoxic T cells KW - hepatology KW - imaging the immune system KW - viral infection Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-233593 VL - 9 ER - TY - JOUR A1 - Boelch, S. P. A1 - Jakuscheit, A. A1 - Doerries, S. A1 - Fraissler, L. A1 - Hoberg, M. A1 - Arnholdt, J. A1 - Rudert, M. T1 - Periprosthetic infection is the major indication for TKA revision – experiences from a university referral arthroplasty center JF - BMC Musculoskeletal Disorders N2 - Background: We hypothesized, that periprosthetic joint infection (PJI) accounts for the major proportion of first (primary) and repeated (secondary) Total Knee Arthroplasty revisions at our university referral arthroplasty center. Methods: One thousand one hundred forty-three revisions, performed between 2008 and 2016 were grouped into primary (55%) and secondary (45%) revisions. The rate of revision indications was calculated and indications were categorized by time after index operation. The odds ratios of the indications for primary versus secondary revision were calculated. Results: In the primary revision group PJI accounted for 22.3%, instability for 20.0%, aseptic loosening for 14.9% and retropatellar arthrosis for 14.2%. PJI (25.6%) was the most common indication up to 1 year after implantation, retropatellar arthrosis (26.8%) 1–3 years and aseptic loosening (25.6%) more than 3 years after implantation. In the secondary revision group PJI accounted for 39.7%, aseptic loosening for 16.2% and instability for 13.2%. PJI was the most common indication at any time of revision with 43.8% up to one, 35.4% 1–3 years and 39.4% more the 3 years after index operation. The odds ratios in repeated revision were 2.32 times higher (p = 0.000) for PJI. For instability and retropatellar arthrosis the odds ratios were 0.60 times (p = 0.006) and 0.22 times (p = 0.000) lower. Conclusions: PJI is the most common indication for secondary TKA revision and within one year after primary TKA. Aseptical failures such as instability, retropatellar arthrosis and aseptical loosening are the predominant reasons for revision more than one year after primary TKA. KW - knee arthroplasty KW - revision KW - failure KW - periprosthetic infection Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-176983 VL - 19 IS - 395 ER - TY - JOUR A1 - Jarick, Katja J. A1 - Mokhtari, Zeinab A1 - Scheller, Lukas A1 - Hartweg, Julia A1 - Thusek, Sina A1 - Le, Duc-Dung A1 - Ranecky, Maria A1 - Shaikh, Haroon A1 - Qureischi, Musga A1 - Heinze, Katrin G. A1 - Beilhack, Andreas T1 - Photoconversion of Alloreactive T Cells in Murine Peyer’s Patches During Acute Graft-Versus-Host Disease: Tracking the Homing Route of Highly Proliferative Cells In Vivo JF - Frontiers in Immunology N2 - The regulation of immune cell migration throughout the body is essential to warrant immunosurveillance and to maintain immune homeostasis. Marking and tracking of these cells has proven important to study mechanisms of immune cell trafficking and cell interaction in vivo. Photoconversion is a well-suited technique for intravital application because it enables contactless time- and location-specific marking of cells in the tissue without surgically manipulating the microenvironment of the cells in question. However, in dividing cells the converted fluorescent protein may decline quickly. Here, we provide a detailed description of the photoconversion technique and its applicability to tracking highly proliferating T cells from the priming site of T cell activation to peripheral target organs of effector function in a preclinical model. Dendra2+ T cells were photoconverted in the Peyer’s patches during the initiation phase of acute graft-versus-host disease (GvHD) and tracked through the mesenteric lymph nodes and the peripheral blood to the small intestine with flow cytometry and intravital two-photon microscopy. Photoconverted alloreactive T cells preserved the full proliferative capacity, homing, and migration of alloreactive T cells in the intestinal lamina propria. We conclusively proved that photoconversion of highly proliferative alloreactive T cells in the Peyer’s patches is an effective tool to study trafficking of alloreactive T cells under physiologic conditions and to GvHD target tissues. This technique can also be applied to the study of immune cell tracking under inflammatory and non-inflammatory conditions. KW - T cell migration KW - acute graft-versus-host disease KW - mouse models KW - photoconversion KW - Dendra2 KW - Peyer's patch KW - in vivo cell tracking KW - lymphocyte homing Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-323309 VL - 9 ER - TY - THES A1 - Bolze, Tom T1 - Photodynamics of a fluorescent tetrazolium salt and shaping of femtosecond Laguerre-Gaussian laser modes in time and space T1 - Photodynamik eines fluoreszierenden Tetrazoliumsalzes und Formung von Femtosekunden Laguerre-Gauss Lasermoden in Raum und Zeit N2 - This thesis will outline studies performed on the fluorescence dynamics of phenyl-benzo- [c]-tetrazolo-cinnolium chloride (PTC) in alcoholic solutions with varying viscosity using time-resolved fluoro-spectroscopic methods. Furthermore, the properties of femtosecond Laguerre-Gaussian (LG) laser pulses will be investigated with respect to their temporal and spatial features and an approach will be developed to measure and control the spatial intensity distribution on the time scale of the pulse. Tetrazolium salts are widely used in biological assays for their low oxidation and reduction thresholds and spectroscopic properties. However, a neglected feature in these applications is the advantage that detection of emitted light has over the determination of the absorbance. To corroborate this, PTC as one of the few known fluorescent tetrazolium salts was investigated with regard to its luminescent features. Steady-state spectroscopy revealed how PTC can be formed by a photoreaction from 2,3,5-triphenyl-tetrazolium chloride (TTC) and how the fluorescence quantum yield behaved in alcoholic solvents with different viscosity. In the same array of solvents time correlated single photon counting (TCSPC) measurements were performed and the fluorescence decay was investigated. Global analysis of the results revealed different dynamics in the different solvents, but although the main emission constant did change with the solvent, taking the fluorescence quantum yield into consideration resulted in an independence of the radiative rate from the solvent. The non-radiative rate, however, was highly solvent dependent and responsible for the observed solvent-related changes in the fluorescence dynamics. Further studies with the increased time resolution of femtosecond fluorescence upconversion revealed an independence of the main emission constant from the excitation energy, however the dynamics of the cooling processes prior to emission were prolonged for higher excitation energy. This led to a conceivable photoreaction scheme with one emissive state with a competing non-radiative relaxation channel, that may involve an intermediate state. LG laser beams and their properties have seen a lot of scientific attention over the past two decades. Also in the context of new techniques pushing the limit of technology further to explore new phenomena, it is essential to understand the features of this beam class and check the consistency of the findings with theoretical knowledge. The mode conversion of a Hermite-Gaussian (HG) mode into a LG mode with the help of a spiral phase plate (SPP) was investigated with respect to its space-time characteristics. It was found that femtosecond LG and HG pulses of a given temporal duration share the same spectrum and can be characterized using the same well-established methods. The mode conversion proved to only produce the desired LG mode with its characteristic orbital angular momentum (OAM), that is conserved after frequency doubling the pulse. Furthermore, it was demonstrated that temporal shaping of the HG pulse does not alter the result of its mode-conversion, as three completely different temporal pulse shapes produced the same LG mode. Further attention was given to the sum frequency generation of fs LG beams and dynamics of the interference of a HG and a LG pulse. It was found that if both are chirped with inverse signs the spatial intensity distribution does rotate around the beam axis on the time scale of the pulse. A strategy was found that would enable a measurement of these dynamics by upconversion of the interference with a third gate pulse. The results of which are discussed theoretically and an approach of an experimental realization had been made. The simulated findings had only been reproduced to a limited extend due to experimental limitations, especially the interferometric stability of the setup. N2 - Die vorliegende Arbeit wird eine Übersicht über die durchgeführten Studien, die die Fluoreszenzdynamiken von Phenyl-Beno-[c]-Tetrazolo-Cinnolinum Chlorid (PTC) in alkoholischen Lösungsmitteln verschiedener Viskosität mit Hilfe von zeitaufgelöster Fluoreszenzspektroskopie untersuchen, liefern. Des weiteren werden die Eigenschaften von Laserpulsen mit Laguerre-Gauss (LG) strahlprofilen in Hinblick auf ihre räumlichen und zeitlichen Charakteristika beleuchtet und ein Ansatz entwickelt, die räumliche Intensitätsverteilung zu messen und auf der Zeitskala der Pulse zu kontrollieren. Tetrazoliumsalze sind aufgrund ihrer niedrigen Oxidations- und Reduktionspotentiale und ihrere spektroskopischen Eigenschaften weit verbreitet in biologischen Assays. Allerdings wird in diesen Anwendungen der Vorteil, den Messungen der Lichtesmission gegenüber der Lichtabsorption haben, vernachlässigt. Um das zu ergründen wurde PTC, als eines der wenigen bekannten Tetrazoliumsalze welches fluoresziert, im Hinblick auf seine lichtemittierenden Eigenschaften untersucht. Statische Spektroskopie wies nach, wie PTC aus einer Photoreaktion aus 2,3,5-Triphenyl-Tetrazoliumchlorid (TTC) erzeugt werden konnte und wie sich die Fluoreszenzquantenausbeute in alkoholischen Lösungsmitteln mit unterschiedlicher Viskosität verhält. In den gleichen Lösungsmitteln wurden zeitkorreliertes Einzelphotonen Zählen (TCSPC) durchgeführt und der Fluoreszenzzerfall untersucht. Die globale Analyse der Ergebnisse hat gezeigt, das die Dynamiken sich in den verschiedenen Lösungsmitteln unterscheiden, die Konstante, welche die Hauptemission beschreibt, sich in den unterschiedlichen Lösungsmitteln zwar verändert, aber wenn die Fluoreszenzquantenausbeute auch berücksichtigt wird, zu Raten der Lichtemission führte, die unabhängig vom Lösungsmittel sind. Die nichststrahlende Rate allerdings hängt stark vom Lösungsmittel ab und ist auch verantwortlich für die unterschiedlichen Dynamiken in den verschiedenen Lösungen. Weitere Studien, die mit der höheren zeitlichen Auflösung der Fluoreszenzaufkonversionsmethode durchgeführt wurden, ergaben, dass die Hauptfluoreszenz unabhängig von der Anregungsenergie ist, aber die Relaxationsprozesse, welche vor der Lichtaussendung stattfinden, mit höherer Anregungsenergie länger dauern. Die Ergebnisse mündeten in ein denkbares Photoreaktionsschema, das durch einen strahlenden Zustand gekennzeichnet ist und einen konkurrierenden nichtstrahlenden Zerfallspfad besitzt, welcher einen kurzlebigen Zwischenzustand besitzen könnte. Laguerre-Gauss Laserstrahlen und ihre Eigensachften haben in den letzten zwei Jahrzehnten viel wissenschaftliche Aufmerksamkeit erhalten. Auch im Hinblick auf neue Methoden, die die technologische Machbarkeitsgrenze verschieben, um neue Phänomene zu erforschen, ist es notwendig, das Verständnis über diese Strahlklasse zu erweitern und die Konsistenz der Resultate mit dem theoretischen Wissen abzugleichen und in Einklang zu bringen. Die Konversion einer Hermite-Gauss (HG) Mode in eine LG Mode, mit Hilfe einer spiralen Phasenplatte (SPP), wurde im Hinblick auf ihre räumlich-zeitlichen Charakteristika untersucht. Es wurde herausgefunden, dass Femtosekunden HG und LG Pulse einer bestimmten zeitlichen Dauer das gleiche Spektrum besitzen und durch die gleichen etablierten Methoden charakterisiert werden können. Es stellte sich heraus, dass die Modenkonversion nur die gewünschte LG Mode mit ihrem charakeristischen orbitalen Drehimpuls (OAM), der bei Frequenzverdopplung erhalten bleibt, erzeugt. Außerdem wurde demonstriert, dass ein zeitlich geformter Femtosekunden HG Puls nicht das Resultat der Modenkonversion beeinflusst, da zeitlich völlig verschieden strukturierte Pulse die gleiche LG Mode erzeugen. Des weiteren wurde die Summenfrequenz von fs LG Strahlen und die Dynamik der Interferenz eines HG und eines LG Pulses beleuchtet. Es wurde gefunden, dass wenn beide entgegengesetzt gechirpt sind, die räumliche Intensitätsverteilung auf der Zeitskala der Pulse um die Strahlachse rotiert. Theoretisch wurde ein Vorgehen entwickelt, das eine Messung dieser Dynamik, durch die Aufkonversion der Interferenz mit einem dritten Gate-Puls, ermöglicht. Die Ergebnisse dieser Methode wurden auf theoretischer Ebende diskutiert und ein Versuch einer experimentellen Realisierung wurde unternommen. Allerdings konnten die gemessenen Resultate, aufgrund experimenteller Limitierungen insbesondere der interferometrischen Stabilität, die theoretischen Erwartungen nur bedingt demonstrieren. KW - Tetrazoliumsalze KW - Fluoreszenz KW - Femtosekundenlaser KW - Zeitauflösung KW - Impulsformung KW - Lasermode KW - Laguerre-Gauss Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-160902 ER - TY - THES A1 - Munz, Eberhard T1 - Physiological and metabolical high-resolution MRI of plants T1 - Physiologische und metabolische hochaufgelöste Pflanzen-Magnetresonanzbildgebung N2 - The noninvasive magnetic resonance imaging technique allows for the investigation of functional processes in the living plant. For this purpose during this work, different NMR imaging methods were further developed and applied. For the localisation of the intrusion of water into the germinating rape seed with the simultaneous depiction of the lipid-rich tissue via a 3D rendering, in Chap. 5 the technique of interleaved chemical selective acquisition of water and lipid was used in the germinating seed. The utilization of high-resolution MR images of germinated seeds enabled the localization of a predetermined water gap in the lipid-rich aleurone layer, which resides directly under the seed coat. The for a long time in biology prevalent discussion, whether such a gap exists or the seed soaks up the water from all sides, rather like a sponge, could hereby, at least for the rapeseed seed, be answered clearly. Furthermore, the segmentation and 3D visualization of the vascular tissue in the rapeseed seeds was enabled by the high-resolution datasets, a multiply branched structure preconstructed in the seed could be shown. The water is directed by the vascular tissue and thus awakens the seed gradually to life. This re-awakening could as well be tracked by means of invasive imaging via an oxygen sensor. In the re-awakened seeds, the lipid degradation starts, other than expected, not in the lipid-rich cotyledons but in the residual endosperm remaining from seed development and in the aleurone layer which previously protected the embryo. Within this layer, the degradation could be verified in the high-resolution MR datasets. The method presented in Chap. 6 provides a further characteristic trait for phenotyping of seeds and lipid containing plants in general. The visualization of the compounds of fatty acids in plant seeds and fruits could be achieved by the distinct utilization of chemical shift-selective imaging techniques. Via the application of a CSI sequence the fatty acid compounds in an olive were localized in a 2D slice. In conjunction with an individually adjusted CHESS presaturation module Haa85 the high-resolution 3D visualization of saturated and unsaturated fatty acid compounds in different seeds was achieved. The ratio maps calculated from these datasets allow to draw conclusions from the developmental stage or the type of seed. Furthermore, it could be shown that the storage condition of two soybean seeds with different storage time durations lead to no degradation of the fatty acid content. Additional structural information from inside of dry seeds are now accessible via MRI. In this work the imaging of cereal seeds could be significantly improved by the application of the UTE sequence. The hitherto existing depictions of the lipid distribution, acquired with the spin echo sequence, were always sufficient for examinations of the lipid content, yet defects in the starchy endosperm or differences in the starch concentration within the seed remained constantly unseen with this technique. In a direct comparison of the datasets acquired with the previous imaging technique (spin echo) and with UTE imaging, the advantage of data acquisition with UTE could be shown. By investigating the potential seed compounds (starch, proteins, sugar) in pure form, the constituent parts contributing to the signal could be identified as bound water (residual moisture) and starch. The application of a bi-exponential fit on the datasets of the barley seed enabled the separate mapping of magnetization and of relaxation time of two components contributing to the NMR signal. The direct comparison with histological stainings verified the previous results, thus this technique can be used for the selective imaging of starch in dry seeds. Conclusions on the translocation characteristics in plants can be drawn by the technique proposed in Chap. 8. The associated translocation velocities can now, even in the range of several um/h, be determined in the living plant. Based on calculated concentrations of an MR contrast agent, which was taken up by the plant, these translocation velocities were estimated both in longitudinal direction, thus along the vascular bundle, and in horizontal direction, thus out of the bundle. The latter velocity is located below the contrast agent's velocity value of free diffusion. By adjusting a dynamic contrast-enhancing imaging technique (DCE-Imaging, Tof91) the acquisition duration of a T1-map was significantly reduced. By means of these maps, local concentrations of the contrast agent in plant stems and the siliques of the rapeseed plant could be determined. Numerous questions in plant science can only be answered by non-invasive techniques such as MRI. For this reason, besides the experimental results achieved in this work, further NMR methods were tested and provided for the investigation of plants. As an example, the study on the imaging of magnetic exchange processes are mentioned, which provided the groundwork for a possible transfer of CEST experiments (Chemical Exchange Saturation Transfer) to the plant. The results are presented in the bachelor thesis of A. Jäger Jae17, which was performed under my supervision, they find great interest under biologists. The development of new technologies, which extend the possibilities for the investigation of living organisms, is of great importance. For this reason, I have contributed to the development of the currently unpublished method RACETE (Refocused Acquisition of Chemical Exchange Transferred Excitations [Jak17, Reu17, Gut18a]). By rephasing the transferred magnetization the utilization of properties which have not been available in chemical "`exchange"' experiments is enabled. With this method a positive contrast is generated, thus a reference experiment is not mandatory. Furthermore, the image phase, which in classical experiments contains no information about the exchanged protons, can be used for the distinct identification of multiple substances which have been excited simultaneously. This recently at the Department of Experimental Physics V developed method can be used in particular for the identification of lipids and for the localization of sugars and amino acids, thus it can serve the enhancement and improvement of non-invasive analytical methods. N2 - Die nicht-invasive Bildgebungstechnik der Magnetresonanz ermöglicht es, funktionelle Prozesse in Pflanzen am lebenden Objekt zu untersuchen. Hierfür wurden im Rahmen dieser Arbeit verschiedene NMR-Bildgebungsmethoden weiterentwickelt und angewendet. Da Pflanzen ein magnetisch sehr inhomogenes Gewebe besitzen, bedingt durch Lufteinschlüsse und das Vorhandensein verschiedenster gelöster Stoffe im Pflanzengewebe, wurden daher hauptsächlich Spin-Echo-Methoden für die Bildgebung verwendet. Um das erste Eindringen des Wassers in den keimenden Raps-Samen bei gleichzeitiger Darstellung des lipid-reichen Gewebes mittels einer 3D-Visualisierung zu lokalisieren, wurde in Kapitel 5 die Technik der verschachtelten, chemisch selektiven Aufnahme von Wasser und Lipid im keimenden Samen verwendet. Durch Verwendung von hochausgelösten MR-Aufnahmen an gekeimten Samen konnte weiterhin in der lipid-reichen Aleuron-Schicht, die sich direkt unter der Samenschale befindet, ein gezielt angelegter Einlass für das Wasser verortet werden. Die in der Biologie lange Zeit verbreitete Diskussion, ob es einen solchen Einlass gibt oder der keimende Samen das Wasser eher wie ein Schwamm von allen Seiten aufsaugt, konnte hierdurch, zumindest für den Raps-Samen, eindeutig beantwortet werden. Weiterhin konnte durch die hoch-aufgelösten Aufnahmen das vaskuläre Gewebe in den Raps-Samen segmentiert und in 3D veranschaulicht werden, es zeigte sich eine mehrfach verzweigte Struktur, die bereits im Samen angelegt ist. Das Wasser folgt hierbei dem vaskulären Gewebe und erweckt hierdurch den Samen schrittweise zum Leben. Dieses Wieder-Erwachen konnte ebenfalls durch die invasive Bildgebung mittels eines Sauerstoff-Sensors nachverfolgt werden. Im nun erwachten Samen selbst beginnt der Lipid-Abbau, anders als zunächst angenommen, nicht in den lipid-haltigen Kotyledonen sondern im von der Samen-Entwicklung verbliebenden Endosperm und in der den Keimling vormals schützenden Aleuron-Schicht. In dieser konnte der Abbau an gekeimten Samen durch hochaufgelöste MR-Aufnahmen nachgewiesen werden. Die in Kapitel 6 vorgeschlagene Methode liefert ein weiteres Merkmal zur Phenotypisiserung von Samen und lipidhaltigen Pflanzenbestandteilen im Allgemeinen. Die Darstellung der Bestandteile ungesättigter Fettsäuren in Pflanzensamen und -Früchten konnte durch gezielte Verwendung von chemisch selektiven Bildgebungstechniken erreicht werden. Durch die Anwendung einer CSI-Sequenz konnten die Fettsäurebestandteile in Oliven in einer 2D-Schicht lokalisiert werden. In Verbindung mit einem jeweils angepassten CHESS-Vorsättigungsmodul Haa85 wurde die hochaufgelöste 3D-Darstellung von gesättigten und ungesättigten Fettsäurebestandteilen in unterschiedlichen Samen erreicht. Rückschlüsse über das Entwicklungsstadium sowie die Sorte der verwendeten Samen können aus den Verhältnis-Karten, die aus den jeweiligen Datensätzen berechnet wurden, gezogen werden. Dass in diesem Fall die Aufbewahrungsmethode zu keiner Degradation der Fettsäurezusammensetzung geführt hat, konnte weiterhin am Beispiel von zwei Sojasamen mit unterschiedlicher Lagerdauer gezeigt werden. Zusätzliche strukturelle Informationen aus dem Inneren trockener Samen sind nun mittels MRT zugänglich. In dieser Arbeit konnte durch die UTE-Sequenz die Bildgebung von Getreidesamen deutlich vorangebracht werden. Die bisherigen Darstellungen der Lipid-Verteilung, aufgenommen mit einer Spin-Echo Sequenz, waren zwar für die Betrachtung des Lipid-Gehalts stets ausreichend, Defekte im stärkehaltigen Endosperm oder Unterschiede in der Stärke-Konzentration innerhalb des Samen blieben mit dieser Technik jedoch stets verborgen. Im direkten Vergleich der mit der bisherigen Technik (Spin-Echo) und der UTE-Bildgebung aufgenommenen Datensätze konnte der Vorteil der Datenaufnahme mit UTE gezeigt werden. Durch die Untersuchung der möglichen Samenbestandteile (Stärke, Proteine, Zucker) in Reinform konnten die zum Signal beitragen Bestandteile als gebundenes Wasser (Restfeuchte) und Stärke identifiziert werden. Die Verwendung bi-exponentiellen Fits and die Messdaten ermöglichte es im Gersten-Samen, zwei zum Signal beitragende Komponenten in getrennten Karten bezüglich ihrer Magnetisierung und Relaxationszeit zu trennen. Der Vergleich mit histologischen Färbungen bestätigte die bisherigen Ergebnisse, somit kann diese Technik zur selektiven Darstellung von Stärke in trockenen Samen verwendet werden. Rückschlüsse auf das Transportverhalten in Pflanzen können durch die in Kapitel 8 vorgestellte Technik gezogen werden. Die zugehörigen Transportgeschwindigkeiten im lebenden Pflanzenobjekt können nun, selbst im Bereich von wenigen $\mu$m/h, bestimmt werden. Diese wurden anhand von berechneten Konzentrationen eines von der Pflanze aufgenommenen MR-Kontrastmittels sowohl in longitudinaler Richtung, also entlang des Leitgewebebündels, als auch in horizontaler Richtung, also aus dem Leitbündel heraus, abgeschätzt werden; Letztere Geschwindigkeit liegt deutlich unter dem Wert der freien Diffusionsgeschwindigkeit des Kontrastmittels. Hierfür wurden durch Anpassung einer dynamischen Kontrast-erhöhenden Bildgebungstechnik (DCE-Imaging, Tof91) die Aufnahmedauer einer für die weiteren Berechnungen benötigen T1-Karte deutlich reduziert. Mittels dieser Karten konnten die lokalen Konzentrationen des Kontrastmittels in Pflanzenstängeln und Schoten der Rapspflanze bestimmt werden. Zahlreiche Fragen in der Pflanzenforschung können nur durch nicht-invasive Techniken wie MRT beantwortet werden. Deswegen wurden, neben den experimentellen Ergebnissen, die mittels dieser Arbeit erreicht wurden, auch weitere NMR Methoden für die Untersuchung von Pflanzen getestet und zur Verfügung gestellt. Als Beispiel seien hier die Untersuchungen zur Bildgebung von magnetischen Austauschprozessen genannt, welche eine Vorarbeit zur möglichen Übertragung con CEST-Experimenten (Chemical Exchange Saturation Transfer) auf das Modell Pflanze liefern. Die Ergebnisse sind in der Bachelor-Arbeit von A. Jäger \cite{jaeger17}, an deren Durchführung ich als Betreuer maßgeblich beteiligt war, dargestellt und finden großes Interesse bei Biologen. Von besonderer Wichtigkeit sind auch die Entwicklungen neuer Technologien, die die Möglichkeiten zur Untersuchung von lebenden Organismen erweitern können. Deswegen habe ich zu der Entwicklung der bislang unveröffentlichten Methode RACETE (Refocused Acquisition of Chemical Exchange Transferred Excitations [Jak17, Reu17, Gut18a]) beigetragen. Durch das Rephasieren der transferierten Magnetisierung können Eigenschaften, die bislang in chemischen "`Austausch"'-Experimenten nicht zur Verfügung stehen, ausgenutzt werden. Mit dieser Methode wird ein positiver Kontrast erzeugt, sie ist deshalb nicht zwingend auf ein Referenz-Experiment angewiesen. Weiterhin kann die Bildphase, welche in klassichen CEST-Experimenten keine Information über die ausgetauschten Protonen enthält, zur eindeutigen Identifizierung mehrerer parallel angeregter Substanzen verwendet werden. KW - Kernspintomografie KW - Pflanzen KW - Pflanzenbildgebung Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-172518 ER - TY - JOUR A1 - Wei, Chunzhu A1 - Blaschke, Thomas T1 - Pixel-wise vs. object-based impervious surface analysis from remote sensing: correlations with land surface temperature and population density JF - Urban Science N2 - Impervious surface areas (ISA) are heavily influenced by urban structure and related structural features. We examined the effects of object-based impervious surface spatial pattern analysis on land surface temperature and population density in Guangzhou, China, in comparison to classic per-pixel analyses. An object-based support vector machine (SVM) and a linear spectral mixture analysis (LSMA) were integrated to estimate ISA fraction using images from the Chinese HJ-1B satellite for 2009 to 2011. The results revealed that the integrated object-based SVM-LSMA algorithm outperformed the traditional pixel-wise LSMA algorithm in classifying ISA fraction. More specifically, the object-based ISA spatial patterns extracted were more suitable than pixel-wise patterns for urban heat island (UHI) studies, in which the UHI areas (landscape surface temperature >37 °C) generally feature high ISA fraction values (ISA fraction >50%). In addition, the object-based spatial patterns enable us to quantify the relationship of ISA with population density (correlation coefficient >0.2 in general), with global human settlement density (correlation coefficient >0.2), and with night-time light map (correlation coefficient >0.4), and, whereas pixel-wise ISA did not yield significant correlations. These results indicate that object-based spatial patterns have a high potential for UHI detection and urbanization monitoring. Planning measures that aim to reduce the urbanization impacts and UHI intensities can be better supported. KW - impervious surface areas KW - object-based image analysis KW - land surface temperature KW - population density Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-197829 SN - 2413-8851 VL - 2 IS - 1 ER - TY - JOUR A1 - Breitinger, Ulrike A1 - Bahnassawy, Lamiaa M. A1 - Janzen, Dieter A1 - Römer, Vera A1 - Becker, Cord-Michael A1 - Villmann, Carmen A1 - Breitinger, Hans-Georg T1 - PKA and PKC modulators affect ion channel function and internalization of recombinant alpha1 and alpha1-beta glycine receptors JF - Frontiers in Molecular Neurosience N2 - Glycine receptors (GlyRs) are important mediators of fast inhibitory neurotransmission in the mammalian central nervous system. Their function is controlled by multiple cellular mechanisms, including intracellular regulatory processes. Modulation of GlyR function by protein kinases has been reported for many cell types, involving different techniques, and often yielding contradictory results. Here, we studied the effects of protein kinase C (PKC) and cAMP-dependent protein kinase A (PKA) on glycine induced currents in HEK293 cells expressing human homomeric \(\alpha\)1 and heteromeric \(\alpha\)1-\(\beta\) GlyRs using whole-cell patch clamp techniques as well as internalization assays. In whole-cell patch-clamp measurements, modulators were applied in the intracellular buffer at concentrations between 0.1 \(\mu\)M and 0.5 \(\mu\)M. EC50 of glycine increased upon application of the protein kinase activators Forskolin and phorbol-12-myristate-13-acetate (PMA) but decreased in the presence of the PKC inhibitor Staurosporine aglycon and the PKA inhibitor H-89. Desensitization of recombinant \(\alpha\)1 receptors was significantly increased in the presence of Forskolin. Staurosporine aglycon, on the other hand decreased desensitization of heteromeric \(\alpha\)1-\(\beta\) GlyRs. The time course of receptor activation was determined for homomeric \(\alpha\)1 receptors and revealed two simultaneous effects: cells showed a decrease of EC50 after 3-6 min of establishing whole-cell configuration. This effect was independent of protein kinase modulators. All modulators of PKA and PKC, however, produced an additional shift of EC50, which overlay and eventually exceeded the cells intrinsic variation of EC50. The effect of kinase activators was abolished if the corresponding inhibitors were co-applied, consistent with PKA and PKC directly mediating the modulation of GlyR function. Direct effects of PKA-and PKC-modulators on receptor expression on transfected HEK cells were monitored within 15 min of drug application, showing a significant increase of receptor internalization with PKA and PKC activators, while the corresponding inhibitors had no significant effect on receptor surface expression or internalization. Our results confirm the observation that phosphorylation via PKA and PKC has a direct effect on the GlyR ion channel complex and plays an important role in the fine-tuning of glycinergic signaling. KW - glycine receptor KW - PKA KW - PKC KW - activators/inhibitors of phosphorylation KW - whole-cell currents KW - modulation kinetics KW - receptor internalization Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-220401 VL - 11 ER - TY - JOUR A1 - Albrecht, Jörg A1 - Classen, Alice A1 - Vollstädt, Maximilian G.R. A1 - Mayr, Antonia A1 - Mollel, Neduvoto P. A1 - Schellenberger Costa, David A1 - Dulle, Hamadi I. A1 - Fischer, Markus A1 - Hemp, Andreas A1 - Howell, Kim M. A1 - Kleyer, Michael A1 - Nauss, Thomas A1 - Peters, Marcell K. A1 - Tschapka, Marco A1 - Steffan-Dewenter, Ingolf A1 - Böhning-Gaese, Katrin A1 - Schleuning, Matthias T1 - Plant and animal functional diversity drive mutualistic network assembly across an elevational gradient JF - Nature Communications N2 - Species' functional traits set the blueprint for pair-wise interactions in ecological networks. Yet, it is unknown to what extent the functional diversity of plant and animal communities controls network assembly along environmental gradients in real-world ecosystems. Here we address this question with a unique dataset of mutualistic bird-fruit, bird-flower and insect-flower interaction networks and associated functional traits of 200 plant and 282 animal species sampled along broad climate and land-use gradients on Mt. Kilimanjaro. We show that plant functional diversity is mainly limited by precipitation, while animal functional diversity is primarily limited by temperature. Furthermore, shifts in plant and animal functional diversity along the elevational gradient control the niche breadth and partitioning of the respective other trophic level. These findings reveal that climatic constraints on the functional diversity of either plants or animals determine the relative importance of bottom-up and top-down control in plant-animal interaction networks. KW - Traits-Environment Relationships KW - Species Traits KW - Ecological Networks KW - 4TH-Corner Problem KW - Multiple Traits KW - Bottom-up KW - Biodiversity KW - Community ecology KW - Ecological networks KW - Ecology KW - Ecosystem ecology Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-221056 VL - 9 ER - TY - JOUR A1 - Schiele, Miriam A. A1 - Ziegler, Christiane A1 - Kollert, Leonie A1 - Katzorke, Andrea A1 - Schartner, Christoph A1 - Busch, Yasmin A1 - Gromer, Daniel A1 - Reif, Andreas A1 - Pauli, Paul A1 - Deckert, Jürgen A1 - Herrmann, Martin J. A1 - Domschke, Katharina T1 - Plasticity of Functional MAOA Gene Methylation in Acrophobia JF - International Journal of Neuropsychopharmacology N2 - Epigenetic mechanisms have been proposed to mediate fear extinction in animal models. Here, MAOA methylation was analyzed via direct sequencing of sodium bisulfite-treated DNA extracted from blood cells before and after a 2-week exposure therapy in a sample of n = 28 female patients with acrophobia as well as in n = 28 matched healthy female controls. Clinical response was measured using the Acrophobia Questionnaire and the Attitude Towards Heights Questionnaire. The functional relevance of altered MAOA methylation was investigated by luciferase-based reporter gene assays. MAOA methylation was found to be significantly decreased in patients with acrophobia compared with healthy controls. Furthermore, MAOA methylation levels were shown to significantly increase after treatment and correlate with treatment response as reflected by decreasing Acrophobia Questionnaire/Attitude Towards Heights Questionnaire scores. Functional analyses revealed decreased reporter gene activity in presence of methylated compared with unmethylated pCpGfree_MAOA reporter gene vector constructs. The present proof-of-concept psychotherapy-epigenetic study for the first time suggests functional MAOA methylation changes as a potential epigenetic correlate of treatment response in acrophobia and fosters further investigation into the notion of epigenetic mechanisms underlying fear extinction. KW - monoamine oxidase A KW - anxiety KW - extinction KW - epigenetics KW - DNA methylation Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-228571 VL - 21 IS - 9 ER - TY - JOUR A1 - Reidenberg, Bruce E. A1 - Wanner, Christoph A1 - Polsky, Bruce A1 - Castanheira, Mariana A1 - Shelip, Alla A1 - Stalleicken, Dirk A1 - Pfaffle, Antony E. T1 - Postmarketing experience with Neutrolin® (taurolidine, heparin, calcium citrate) catheter lock solution in hemodialysis patients JF - European Journal of Clinical Microbiology & Infectious Diseases N2 - Catheter-related bloodstream infections (CRBSI) are major complications for patients with life-threatening conditions requiring chronic vascular catheterization. The wide range of etiologic microbes and the ongoing development of resistance to antimicrobials with specific mechanisms of action make this an appropriate target for applying a nonspecific antimicrobial therapeutic. Taurolidine hydrolyzes into two antimicrobial moieties, formaldehyde and methylene glycol, which react with microbial surfaces. NeutrolinA (R) (taurolidine, heparin, calcium citrate) was recently introduced in Germany as an antimicrobial catheter lock solution. This postmarketing experience collected data on 201 patients at 20 centers from January 2014 through September 2016. Likely CRBSI was observed in 13 episodes in 47,118 days (0.2759 per 1000 days [0.1468, 0.4718]). Thrombosed catheter was observed in seven catheters in 47,118 days (0.1486 per 1000 days [0.0595, 0.3061]). No adverse drug reactions that led to the discontinuation of NeutrolinA (R) use were reported. Two patients experienced occasional transient dysgeusia. NeutrolinA (R), when used in conjunction with guideline-based catheter care, showed reduction in the rate of both CRBSI and catheter thrombosis relative to recent historical controls. KW - Taurolidine KW - Postmarketing Experience KW - Catheter Lock Solution KW - Calcium Citrate KW - Catheter-related Bloodstream Infections (CRBSI) Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-225091 VL - 37 IS - 4 ER - TY - THES A1 - Bucher, Hannes T1 - Pre-clinical modeling of viral- and bacterial-induced exacerbations of chronic obstructive pulmonary disease T1 - Prä-klinische Modellierung von viral und bakteriell induzierten Exazerbationen von Chronisch Obstruktiver Lungenerkrankung N2 - Chronic Obstructive Pulmonary Disease (COPD) exacerbations are a considerable reason for increased morbidity and mortality in patients. Infections with influenza virus (H1N1), respiratory syncytial virus (RSV) or nontypeable Haemophilus influenzae (NTHi) are important triggers of exacerbations. To date, no treatments are available which can stop the progression of COPD. Novel approaches are urgently needed. Pre-clinical models of the disease are crucial for the development of novel therapeutic options. In order to establish pre-clinical models which mimic aspects of human COPD exacerbations, mice were exposed to cigarette smoke (CS) and additionally infected with H1N1, RSV and/or NTHi. Clinically relevant treatments such as the corticosteroids Fluticasone propionate and Dexamethasone, the phosphodiesterase-4 (PDE-4) inhibitor Roflumilast and the long-acting muscarinic receptor antagonist Tiotropium were tested in the established models. Furthermore, a novel treatment approach using antibodies (Abs) directed against IL-1α, IL-1β or IL-1R1 was examined in the established CS/H1N1 model. Levels of IFN-γ, IL-1β, IL-2, IL-6, KC, TNF-α, RANTES, IL-17, MCP-1, MIP 1α and MIP-1β were measured in lung homogenate. Numbers of total cells, neutrophils and macrophages were assessed in bronchoalveolar lavage (BAL) fluid. Hematoxylin- and eosin- (H&E-) stained lung slices were analyzed to detect pathological changes. Quantitative polymerase-chain-reaction (qPCR) was used to investigate gene expression of ICAM-1 and MUC5 A/C. The viral/bacterial load was investigated in lung homogenate or BAL fluid. In addition to the in vivo studies, the effects of the above mentioned treatments were investigated in vitro in H1N1, RSV or NTHi-infected (primary) human bronchial epithelial cells using submerged or air-liquid-interface (ALI) cell culture systems. Four pre-clinical models (CS/H1N1, CS/RSV, CS/NTHi, CS/H1N1/NTHi) were established depicting clinically relevant aspects of COPD exacerbations such as increased inflammatory cells and cytokines in the airways and impaired lung function. In the CS/H1N1 model, Tiotropium improved lung function and was superior in reducing inflammation in comparison to Fluticasone or Roflumilast. Moreover, Fluticasone increased the loss of body-weight, levels of IL-6, KC and TNF-α and worsened lung function. In CS/RSV-exposed mice Tiotropium but not Fluticasone or Roflumilast treatment reduced neutrophil numbers and IL-6 and TNF α levels in the lung. The viral load of H1N1 and RSV was significantly elevated in CS/virus-exposed mice and NCI-H292 cells after Fluticasone and Dexamethasone treatment. The results from these studies demonstrate that Tiotropium has anti-inflammatory effects on CS/virus-induced inflammation and might help to explain the observed reduction of exacerbation rates in Tiotropium-treated COPD patients. Furthermore, the findings from this work indicate that treatment with Fluticasone or Dexamethasone might not be beneficial to reduce inflammation in the airways of COPD patients and supports clinical studies that link treatment with corticosteroids to an increased risk for pneumonia. Testing of anti-IL-1α, anti-IL-1β or anti-IL-1R1 Abs in the CS/H1N1 model suggests that, in line with clinical data, antagonization of IL-1β is not sufficient to reduce pulmonary inflammation and indicates a predominant role of IL-1α in CS/virus-induced airway inflammation. In line with the in vivo findings, anti-IL-1α but not anti-IL-1β Abs reduced levels of TNF-α and IL-6 in H1N1-infected primary human bronchial epithelial ALI cell culture. Blocking the IL-1R1 provided significant inhibitory effects on inflammatory cells in vivo but was inferior compared to inhibiting both its soluble ligands IL-1α and IL-1β. Concomitant usage of Abs against IL-1α/IL-1β revealed strong effects and reduced total cells, neutrophils and macrophages. Additionally, levels of KC, IL-6, TNF-α, MCP-1, MIP-1α and MIP-1β were significantly reduced and ICAM-1 mRNA expression was attenuated. These results suggest that combined inhibition of IL-1α/IL-1β might be beneficial to reduce inflammation and exacerbations in COPD patients. Moreover, combined targeting of both IL-1α/IL-1β might be more efficient compared to inhibition of the IL-1R1. As in the CS/virus models, corticosteroid treatment failed to reduce inflammatory cells in the CS/NTHi and CS/H1N1/NTHi models, increased the loss of body-weight and the bacterial load. Furthermore, Roflumilast administration had no significant effects on cell counts or cytokines. However, it improved compliance in the CS/NTHi model. Treatment with Azithromycin reduced the bacterial load in the CS/NTHi model and reduced numbers of total cells, neutrophils, macrophages and levels of KC and TNF-α in the CS/H1N1/NTHi model. In conclusion, the established CS/H1N1, CS/RSV, CS/NTHi, CS/H1N1/NTHi models depict clinically relevant aspects of human COPD exacerbations in mice and provide the opportunity to investigate underlying disease mechanisms and to test novel therapies. N2 - Exazerbationen von Chronisch Obstruktiver Lungenerkrankung (COPD) sind ein bedeutender Grund für erhöhte Morbidität und Mortalität von Patienten. Infektionen mit Influenza Virus (H1N1), Respiratory Syncytial Virus (RSV) oder nontypeable Haemophilus influenzae (NTHi) gelten als wichtige Auslöser von Exazerbationen. Bis heute gibt es keine Therapien, welche die Progression von COPD verhindern können. Neue Therapieansätze werden daher dringend benötigt. Prä-klinische Modelle spielen bei der Entwicklung neuer Therapien eine entscheidende Rolle. Um Aspekte einer humanen COPD-Exazerbation abzubilden, wurden Mäuse Zigarettenrauch (CS) ausgesetzt und zusätzlich mit H1N1, RSV und/oder NTHi infiziert. Klinisch relevante Behandlungen, z.B. die Kortikosteroide Fluticasonpropionat und Dexamethason, der Phosphodiesterase 4 (PDE-4) Inhibitor Roflumilast und der muskarinische Rezeptorantagonist Tiotropium, wurden in den etablierten Modellen getestet. Zudem wurde ein neuer therapeutischer Ansatz untersucht bei dem IL-1α, IL-1β neutralisierende bzw. IL-1R1 blockierende Antikörper (Ak) zum Einsatz kamen. Die Mengen von IFN-γ, IL-1β, IL 2, IL-6, KC, TNF-α, RANTES, IL-17, MCP-1, MIP-1α und MIP-1β wurden im Lungenhomogenat gemessen. Die Gesamtzellzahl und die Anzahl von Neutrophilen und Makrophagen wurden in bronchoalveolärer Lavage (BAL) Flüssigkeit bestimmt. Hematoxylin- und Eosin- (H&E-) gefärbte Lungenschnitte wurden analysiert, um pathologische Veränderungen zu detektieren. Quantitative Polymerase-Kettenreaktion (qPCR) wurde genutzt, um die Genexpression von ICAM-1 und MUC5 A/C zu untersuchen. Die Virus /Bakterienlast wurde in BAL Flüssigkeit oder Lungenhomogenat gemessen. Darüber hinaus wurden die Effekte der oben genannten Behandlungen in vitro in H1N1, RSV oder NTHi infizierten (primären) humanen bronchialen Epithelzellen in „submerged“ oder „air-liquid-interface (ALI)“ Zellkultur-Systemen untersucht. Vier prä-klinische Modelle (CS/H1N1, CS/RSV, CS/NTHi, CS/H1N1/NTHi) wurden etabliert, die relevante Aspekte einer Exazerbation, wie beispielsweise den Einstrom inflammatorischer Zellen, erhöhte Zytokinlevel oder verminderte Lungenfunktion abbilden. Im CS/H1N1-Modell verbesserte Tiotropium die Lungenfunktion und zeigte stärker anti-entzündliche Effekte als Fluticason oder Roflumilast. Zudem verstärkte Fluticason den Gewichtsverlust, erhöhte die Level von IL-6 und TNF-α und verschlechterte die Lungenfunktion. Im CS/RSV-Modell reduzierte Tiotropium, aber nicht Fluticason oder Roflumilast die Zahl der Neutrophilen sowie IL-6 und TNF-α Mengen. Die Menge von H1N1 und RSV war in den CS/Virus-Modellen sowie in NCI-H292 Zellen nach Fluticason- oder Dexamethason-Behandlung signifikant erhöht. Die Ergebnisse dieser Studien demonstrieren anti-inflammatorische Effekte von Tiotropium auf CS/Virus-induzierte Entzündung und könnten helfen, reduzierte Exazerbationshäufigkeiten in mit Tiotropium behandelten Patienten zu erklären. Zudem könnten die Resultate dieser Arbeit darauf hindeuten, dass die Behandlung mit Kortikosteroiden nicht geeignet ist, um Entzündung in COPD-Patienten zu reduzieren, und könnten dabei helfen, das in klinischen Studien festgestellte erhöhte Risiko von Pneumonien bei Behandlung mit Kortikosteroiden zu erklären. Im Einklang mit klinischen Daten deutet die Testung von anti-IL-1α, anti-IL-1β oder anti IL-1R1 Ak im CS/H1N1-Modell darauf hin, dass die Neutralisation von IL-1β nicht ausreicht, um die Entzündung in der Lunge zu reduzieren, und impliziert eine prädominierende Rolle von IL-1α in CS/H1N1-induzierter Atemwegsentzündung. Konform mit den in vivo Ergebnissen, reduzierten anti-IL-1α, aber nicht anti-IL-1β Ak, TNF-α und IL-6 in H1N1-infizierter primärer humaner bronchialer epithelialer ALI-Zellkultur. Die Blockade von IL-1R1 zeigte in vivo signifikante inhibitorische Effekte auf inflammatorische Zellen, die verglichen mit der Neutralisation seiner löslichen Liganden IL-1α/IL-1β allerdings unterlegen waren. Die kombinierte Neutralisation von IL-1α/IL-1β war sehr effektiv und reduzierte die Gesamtzellzahl sowie die Zahl der Neutrophilen und Makrophagen in der Lunge. Zusätzlich wurden die Level von KC, IL-6, TNF-α, MCP-1, MIP-1α und MIP-1β signifikant reduziert. Diese Ergebnisse deuten darauf hin, dass kombinierte Inhibition von IL-1α/IL-1β geeignet sein könnte, um Entzündung und Exazerbationen in COPD-Patienten zu reduzieren. Zudem könnte IL-1α/IL-1β-Neutralisation effektiver sein als IL-1R1-Blockade. Wie in den CS/Virus-Modellen wurden inflammatorische Zellen durch Kortikosteroid-Behandlung im CS/NTHi- und CS/H1N1/NTHi-Modell nicht reduziert, verstärkten zudem den Gewichtsverlust und erhöhten die Bakterienmenge. Roflumilast zeigte keine Effekte auf Zellzahlen und Zytokine. Allerdings verbesserte die Behandlung damit die Compliance im CS/NTHi-Modell. Die Behandlung mit Azithromycin reduzierte die Bakterienmenge im CS/NTHi-Modell und reduzierte die Gesamtzellzahl und Anzahl von Neutrophilen und Makrophagen, sowie die Level von KC und TNF-α im CS/H1N1/NTHi-Modell. Zusammenfassend bilden die etablierten CS/H1N1-, CS/RSV-, CS/NTHi-, CS/H1N1/NTHi-Modelle klinisch relevante Aspekte von humanen COPD-Exazerbationen ab und ermöglichen die Erforschung von Krankheitsmechanismen und neuen Therapieansätze. KW - Obstruktive Ventilationsstörung KW - COPD KW - Exacerbation KW - Tiotropium KW - Influenza KW - NTHi KW - Preclinical KW - Model KW - Treatment KW - Exazerbation KW - Maus Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-144368 ER - TY - INPR A1 - Werner, Rudolf A. A1 - Ilhan, Harun A1 - Lehner, Sebastian A1 - Papp, László A1 - Zsótér, Norbert A1 - Schatka, Imke A1 - Muegge, Dirk O. A1 - Javadi, Mehrbod S. A1 - Higuchi, Takahiro A1 - Buck, Andreas K. A1 - Bartenstein, Peter A1 - Bengel, Frank A1 - Essler, Markus A1 - Lapa, Constantin A1 - Bundschuh, Ralph A. T1 - Pre-therapy Somatostatin-Receptor-Based Heterogeneity Predicts Overall Survival in Pancreatic Neuroendocrine Tumor Patients Undergoing Peptide Receptor Radionuclide Therapy T2 - Molecular Imaging and Biology N2 - Purpose: Early identification of aggressive disease could improve decision-support in pancreatic neuroendocrine tumor (pNET) patients prior to peptide receptor radionuclide therapy (PRRT). The prognostic value of intratumoral textural features (TF) determined by baseline somatostatin receptor (SSTR)-PET before PRRT was analyzed. Procedures: 31 patients with G1/G2 pNET were enrolled (G2, n=23/31). Prior to PRRT with [\(^{177}\)Lu]DOTATATE (mean, 3.6 cycles), baseline SSTR-PET/CT was performed. By segmentation of 162 (median per patient, 5) metastases, intratumoral TF were computed. The impact of conventional PET parameters (SUV\(_{mean/max}\)), imaging-based TF as well as clinical parameters (Ki67, CgA) for prediction of both progression-free (PFS) and overall survival (OS) after PRRT was evaluated. Results: Within a median follow-up of 3.7y, tumor progression was detected in 21 patients (median, 1.5y) and 13/31 deceased (median, 1.9y). In ROC analysis, the TF Entropy, reflecting derangement on a voxel-by-voxel level, demonstrated predictive capability for OS (cutoff=6.7, AUC=0.71, p=0.02). Of note, increasing Entropy could predict a longer survival (>6.7, OS=2.5y, 17/31), whereas less voxel-based derangement portended inferior outcome (<6.7, OS=1.9y, 14/31). These findings were supported in a G2 subanalysis (>6.9, OS=2.8y, 9/23 vs. <6.9, OS=1.9y, 14/23). Kaplan-Meier analysis revealed a significant distinction between high- and low-risk groups using Entropy (n=31, p<0.05). For those patients below the ROC-derived threshold, the relative risk of death after PRRT was 2.73 (n=31, p=0.04). Ki67 was negatively associated with PFS (p=0.002); however, SUVmean/max failed in prognostication (n.s.). Conclusions: In contrast to conventional PET parameters, assessment of intratumoral heterogeneity demonstrated superior prognostic performance in pNET patients undergoing PRRT. This novel PET-based strategy of outcome prediction prior to PRRT might be useful for patient risk stratification. KW - Pancreas KW - Positronen-Emissions-Tomografie KW - PET KW - neuroendocrine tumor KW - tumor heterogeneity KW - [68Ga] KW - [177Lu]-DOTATATE/-DOTATOC KW - PET/CT KW - SSTR Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-164624 UR - https://link.springer.com/article/10.1007/s11307-018-1252-5 SN - 1536-1632 N1 - This is a post-peer-review, pre-copyedit version of an article published in Molecular Imaging and Biology. The final authenticated version is available online at: http://dx.doi.org/s11307-018-1252-5 N1 - Die finale Version dieses Artikels steht unter https://doi.org/10.1007/s11307-018-1252-5 bzw. http://nbn-resolving.org/urn:nbn:de:bvb:20-opus-167168 open access zur Verfügung. ER - TY - JOUR A1 - Werner, Rudolf A. A1 - Ilhan, Harun A1 - Lehner, Sebastian A1 - Papp, László A1 - Zsótér, Norbert A1 - Schatka, Imke A1 - Muegge, Dirk O. A1 - Javadi, Mehrbod S. A1 - Higuchi, Takahiro A1 - Buck, Andreas K. A1 - Bartenstein, Peter A1 - Bengel, Frank A1 - Essler, Markus A1 - Lapa, Constantin A1 - Bundschuh, Ralph A. T1 - Pre-therapy Somatostatin-Receptor-Based Heterogeneity Predicts Overall Survival in Pancreatic Neuroendocrine Tumor Patients Undergoing Peptide Receptor Radionuclide Therapy JF - Molecular Imaging and Biology N2 - Purpose: Early identification of aggressive disease could improve decision-support in pancreatic neuroendocrine tumor (pNET) patients prior to peptide receptor radionuclide therapy (PRRT). The prognostic value of intratumoral textural features (TF) determined by baseline somatostatin receptor (SSTR)-PET before PRRT was analyzed. Procedures: 31 patients with G1/G2 pNET were enrolled (G2, n=23/31). Prior to PRRT with [\(^{177}\)Lu]DOTATATE (mean, 3.6 cycles), baseline SSTR-PET/CT was performed. By segmentation of 162 (median per patient, 5) metastases, intratumoral TF were computed. The impact of conventional PET parameters (SUV\(_{mean/max}\)), imaging-based TF as well as clinical parameters (Ki67, CgA) for prediction of both progression-free (PFS) and overall survival (OS) after PRRT was evaluated. Results: Within a median follow-up of 3.7y, tumor progression was detected in 21 patients (median, 1.5y) and 13/31 deceased (median, 1.9y). In ROC analysis, the TF Entropy, reflecting derangement on a voxel-by-voxel level, demonstrated predictive capability for OS (cutoff=6.7, AUC=0.71, p=0.02). Of note, increasing Entropy could predict a longer survival (>6.7, OS=2.5y, 17/31), whereas less voxel-based derangement portended inferior outcome (<6.7, OS=1.9y, 14/31). These findings were supported in a G2 subanalysis (>6.9, OS=2.8y, 9/23 vs. <6.9, OS=1.9y, 14/23). Kaplan-Meier analysis revealed a significant distinction between high- and low-risk groups using Entropy (n=31, p<0.05). For those patients below the ROC-derived threshold, the relative risk of death after PRRT was 2.73 (n=31, p=0.04). Ki67 was negatively associated with PFS (p=0.002); however, SUVmean/max failed in prognostication (n.s.). Conclusions: In contrast to conventional PET parameters, assessment of intratumoral heterogeneity demonstrated superior prognostic performance in pNET patients undergoing PRRT. This novel PET-based strategy of outcome prediction prior to PRRT might be useful for patient risk stratification. KW - tumor heterogeneity KW - Positronen-Emissions-Tomografie KW - PET KW - PET/CT KW - pancreas KW - SSTR KW - [177Lu]-DOTATATE/-DOTATOC KW - [68Ga] KW - neuroendocrine tumor Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-167168 SN - 1536-1632 ER - TY - THES A1 - Jung, Jamin T1 - Precise timing of the trypanosome cell division cycle T1 - Präzises Timing des trypanosomalen Zellzyklus N2 - African trypanosomes are the causative agents of fatal diseases in humans and livestock. Trypanosomes show a complex lifecycle and shuttle between the transmitting vector, the tsetse (Glossina spec.), and the mammalian host. As a result of this the parasite undergoes tremendous changes in morphology and metabolism to adapt to the different living environments. The two best-studied lifecycle stages are the procyclic forms (PCF) that live in the tsetse fly and the proliferative bloodstream form (BSF) that resides in the mammalian blood. The most conspicuous weapon that trypanosomes use to evade the host immune attack is a dense layer of a single protein type, the variant surface glycoprotein (VSG), which shields the entire cell surface. Immune evasion required high rates of surface membrane turnover and surface coat recycling. Trypanosomes show highly polarised cell architecture with all major eukaryotic organelles (endoplasmic reticulum, Golgi apparatus, endosomal apparatus, lysosome, mitochondrion and peroxisome-like glycosomes) generally present in single copy. Furthermore, trypanosomes possess a single flagellum, which is important not only for cellular motility but also for cell division. How the duplication of all these cellular components is coordinated in order to progresss through the cell division cycle is poorly understood. We used trypanosomes as a model organism due to the relative simplicity and the polarised nature of their cell architecture and determined the duplication of all their compartments. This was only possible due to a new synchronisation approach developed during this project. In the first part of the thesis a precise temporal map of the cell division cycle of the BSF T. brucei cell division cycle was generated. By the use of well-described morphological markers (K/N status, new flagellum outgrowth and DNA synthesis) the position of individual cells was determined with high temporal resolution; this allowed us for the first time to synchronise a cell population in silico without affecting the naturally asynchronous growth. In the second part of the thesis we used this tool to follow duplication events of the Major organelles during progression through the cell division cycle. We precisely determined the time points of organelle duplication and found that it is ordered in trypanosomes. Furthermore we found that BSF T. brucei cells do not grow continuously, cell size start to increase rapidly, during a short period of time, late in the cell division cycle. We speculate that the initiation of cell volume increase is temporally separated from the formation of all secretory organelles in order to ensure maintenance of the protective coat, which must remain intact at all times in order for BSF trypanosomes to be able to evade the host immune response. N2 - Afrikanische Trypanosomen sind Erreger fataler Krankheiten sowohl bei Menschen also auch bei Nutztieren. Trypanosomen weisen einen komplexen Lebenszyklus auf und wechseln hierbei zwischen ihrem Überträger, der Tsetse Fliege (Glossina spec.) und ihrem Säugerwirt. Hieraus resultierend, erlebt der Parasit dramatische Veränderungen der Zellmorphologie und des Zell- metabolismus um sich an die jeweiligen Lebensräume anzupassen. Die zwei am besten unter- suchten Lebensstadien sind die Prozyklische Form (PCF), welche in der Tsetse Fliege vor- kommt und die Blutstrom Form, welche im Säugerwirt zirkuliert. BSF Trypanosomen leben extrazellulär im Säugerblut und sind hier kontinuierlich der Immunabwehr des Wirtes ausge- setzt. Durch einen dichten Proteinmantel eines einzigen Proteintyps, dem variablen Oberflä- chenglykoproteins (VSG) ummantelt der Parasit seine Zelloberfläche und schützt so invariable Proteine vor der Erkennung durch das Immunsystem. Um diesen VSG Mantel aufrecht zu er- halten werden enorm hohe Raten an Oberflächen-membran- und VSG- Recycling benötigt. Trypanosomen weisen eine hoch polarisierte Zellarchitektur auf und die wichtigen Organellen (Endoplasmatisches Retikulum, Golgi Apparat, Endosomaler Apparat, Lysosome, Mitochondri- um und Glykosomen) sind generell in einfacher Kopie vorhanden. Weiterhin besitzen Trypano- somen ein einzenes Flagellum welches sowohl für die Bewegung als auch die Zellteilung des Parasiten von großer Bedeutung ist. All diese Bestandteile müssen während des Zellzyklus verdoppelt werden um zwei lebensfähige Tochterzellen zu generieren. Über die Koordinierung und die Mechanismen der Organellenteilung ist kaum etwas bekannt. Wir nutzen den einfachen Zellaufbau und die polarisierte Zellarchitektur von Trypanosomen um die Verdopplung der zel- lulären Bestandteile zu untersuchen. Dies war jedoch nur durch einen neuen Synchronisie- rungsansatz möglich der im Rahmen dieser Arbeit entwickelt und etabliert wurde. Im ersten Teil der Arbeit wurde eine zeitlich hoch aufgelöste Kartierung des Zellzyklus vorge- nommen. Wir nutzen morphologisch gut beschriebene Marker um die Position einzelner Zellen im Zellzyklus zeitlich sehr genau zu bestimmen, somit kann eine in silico Synchronisierung durchgeführt werde ohne das natürliche Verhalten der Zellpopulation zu beeinflussen. Im zweiten Teil der Arbeit wurde mittels dieser zeitlichen Zellzykluskarte der Teilungszeitpunkt aller wichtigen Organellen bestimmt. Hierbei fanden wir heraus, dass die Teilung der Zellorga- nellen in einer definierten Reihenfolge stattfindet. Weiterhin konnten wir zeigen, dass Trypano- somen nicht kontinuierlich wachsen, die Zelle wächst in einer relativ kurzen Phase, spät im Zellzyklus. Wir vermuten, dass die Teilung der sekretorischen Organellen und das Zellwachs- tums zeitlich voneinander getrennt sind um so den schützenden Proteinmantel, der für das überleben im Blut unabdingbar ist, aufrecht zu erhalten. KW - Zellteilung KW - Trypanosomes KW - Trypanosomen KW - Zellbiologie Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-114932 ER - TY - JOUR A1 - Werner, Rudolf A1 - Schmid, Jan-Stefan A1 - Higuchi, Takahiro A1 - Javadi, Mehrbod S. A1 - Rowe, Steven P. A1 - Märkl, Bruno A1 - Aulmann, Christoph A1 - Fassnacht, Martin A1 - Kroiß, Matthias A1 - Reiners, Christoph A1 - Buck, Andreas A1 - Kreissl, Michael A1 - Lapa, Constantin T1 - Predictive value of \(^{18}\)F-FDG PET in patients with advanced medullary thyroid carcinoma treated with vandetanib JF - Journal of Nuclear Medicine N2 - Introduction: Therapeutic options in advanced medullary thyroid carcinoma (MTC) have markedly improved since the introduction of tyrosine kinase inhibitors (TKI). We aimed to assess the role of metabolic imaging using 2-deoxy-2-(\(^{18}\)F)fluoro-D-glucose (\(^{18}\)F-FDG) positron emission tomography/computed tomography (PET/CT) shortly before and 3 months after initiation of TKI treatment. Methods: Eighteen patients with advanced and progressive MTC scheduled for vandetanib treatment underwent baseline \(^{18}\)F-FDG PET/CT prior to and 3 months after TKI treatment initiation. During follow-up, CT scans were performed every 3 months and analyzed according to Response Evaluation Criteria In Solid Tumors (RECIST). The predictive value for estimating progression-free (PFS) and overall survival (OS) was examined by investigating \(^{18}\)F-FDG mean/maximum standardized uptake values (SUVmean/max) of the metabolically most active lesion as well as by analyzing clinical parameters (tumor marker doubling times {calcitonin, carcinoembryonic antigen (CEA)}, prior therapies, RET (rearranged during transfection) mutational status, and disease type). Results: Within a median follow-up of 5.2 years, 9 patients experienced disease progression after a median time interval of 2.1y whereas the remainder had ongoing disease control (n=5 partial response and n=4 stable disease). Eight of the 9 patients with progressive disease died from MTC after a median of 3.5y after TKI initiation. Pre-therapeutic SUVmean >4.0 predicted a significantly shorter PFS (PFS: 1.9y vs. 5.2y; p=0.04). Furthermore, sustained high 18F-FDG uptake at 3 months with a SUVmean>2.8 tended to portend an unfavorable prognosis with a PFS of 1.9y (vs. 3.5y; p=0.3). Prolonged CEA doubling times were significantly correlated with longer PFS (r=0.7) and OS (r=0.76, p<0.01, respectively). None of the other clinical parameters had prognostic significance. Conclusions: Pre-therapeutic \(^{18}\)F-FDG PET/CT holds prognostic information in patients with advanced MTC scheduled for treatment with the TKI vandetanib. Low tumor metabolism of SUVmean < 4.0 prior to treatment predicts longer progression-free survival. KW - positron emission tomography KW - Medullärer Schilddrüsenkrebs KW - Positronen-Emissions-Tomografie KW - medullary thyroid carcinoma KW - tyrosine kinase inhibitor KW - vandetanib KW - 2- deoxy-2-(18F)fluoro-D-glucose KW - 18F-FDG Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-161256 SN - 0161-5505 N1 - This research was originally published in JNM. Rudolf A. Werner, Jan-Stefan Schmid, Takahiro Higuchi, Mehrbod S. Javadi, Steven P. Rowe, Bruno Märkl, Christoph Aulmann, Martin Fassnacht, Matthias Kroiss, Christoph Reiners, Andreas K. Buck, Michael C. Kreissl, Constantin Lapa. Predictive value of 18F-FDG PET in patients with advanced medullary thyroid carcinoma treated with vandetanib. J Nucl Med. May 1, 2018;vol. 59 no. 5: 756-761. © SNMMI. ER - TY - JOUR A1 - Prauße, Maria T. E. A1 - Lehnert, Teresa A1 - Timme, Sandra A1 - Hünniger, Kerstin A1 - Leonhardt, Ines A1 - Kurzai, Oliver A1 - Figge, Marc Thilo T1 - Predictive Virtual Infection Modeling of Fungal Immune Evasion in Human Whole Blood JF - Frontiers in Immunology N2 - Bloodstream infections by the human-pathogenic fungi Candida albicans and Candida glabrata increasingly occur in hospitalized patients and are associated with high mortality rates. The early immune response against these fungi in human blood comprises a concerted action of humoral and cellular components of the innate immune system. Upon entering the blood, the majority of fungal cells will be eliminated by innate immune cells, i.e., neutrophils and monocytes. However, recent studies identified a population of fungal cells that can evade the immune response and thereby may disseminate and cause organ dissemination, which is frequently observed during candidemia. In this study, we investigate the so far unresolved mechanism of fungal immune evasion in human whole blood by testing hypotheses with the help of mathematical modeling. We use a previously established state-based virtual infection model for whole-blood infection with C. albicans to quantify the immune response and identified the fungal immune-evasion mechanism. While this process was assumed to be spontaneous in the previous model, we now hypothesize that the immune-evasion process is mediated by host factors and incorporate such a mechanism in the model. In particular, we propose, based on previous studies that the fungal immune-evasion mechanism could possibly arise through modification of the fungal surface by as of yet unknown proteins that are assumed to be secreted by activated neutrophils. To validate or reject any of the immune-evasion mechanisms, we compared the simulation of both immune-evasion models for different infection scenarios, i.e., infection of whole blood with either C. albicans or C. glabrata under non-neutropenic and neutropenic conditions. We found that under non-neutropenic conditions, both immune-evasion models fit the experimental data from whole-blood infection with C. albicans and C. glabrata. However, differences between the immune-evasion models could be observed for the infection outcome under neutropenic conditions with respect to the distribution of fungal cells across the immune cells. Based on these predictions, we suggested specific experimental studies that might allow for the validation or rejection of the proposed immune-evasion mechanism. KW - immune evasion KW - state-based model KW - innate immune response KW - polymorphonuclear neutrophils KW - whole-blood infection assay Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-197493 SN - 1664-3224 VL - 9 IS - 560 ER - TY - JOUR A1 - Saudek, František A1 - Cahová, Monika A1 - Havrdová, Terezie A1 - Zacharovová, Klára A1 - Daňková, Helena A1 - Voska, Luděk A1 - Lánská, Věra A1 - Üçeyler, Nurcan A1 - Sommer, Claudia T1 - Preserved Expression of Skin Neurotrophic Factors in Advanced Diabetic Neuropathy Does Not Lead to Neural Regeneration despite Pancreas and Kidney Transplantation JF - Journal of Diabetes Research N2 - Diabetic peripheral neuropathy (DPN) is a common complication of diabetes with potential severe consequences. Its pathogenesis involves hyperglycemia-linked mechanisms, which may include changes in the expression of neurotrophic growth factors. We analyzed the expression of 29 factors potentially related to nerve degeneration and regeneration in skin biopsies from 13 type 1 diabetic pancreas and kidney recipients with severe DPN including severe depletion of intraepidermal nerve fibers (IENF) in lower limb skin biopsies (group Tx1 1st examination). The investigation was repeated after a median 28-month period of normoglycemia achieved by pancreas transplantation (group Tx1 2nd examination). The same tests were performed in 13 stable normoglycemic pancreas and kidney recipients 6-12 years posttransplantation (group Tx2), in 12 matched healthy controls (group HC), and in 12 type 1 diabetic subjects without severe DPN (group DM). Compared to DM and HC groups, we found a significantly higher (p < 0.05-0.001) expression of NGF (nerve growth factor), NGFR (NGF receptor), NTRK1 (neurotrophic receptor tyrosine kinase 1), GDNF (glial cell-derived neurotrophic factor), GFRA1 (GDNF family receptor alpha 1), and GFAP (glial fibrillary acidic protein) in both transplant groups (Tx1 and Tx2). Enhanced expression of these factors was not normalized following the median 28-month period of normoglycemia (Tx1 2nd examination) and negatively correlated with IENF density and with electrophysiological indices of DPN (vibration perception threshold, electromyography, and autonomic tests). In contrast to our expectation, the expression of most of 29 selected factors related to neural regeneration was comparable in subjects with severe peripheral nerve fiber depletion and healthy controls and the expression of six factors was significantly upregulated. These findings may be important for better understanding the pathophysiology of nerve regeneration and for the development of intervention strategies. KW - Nerve growth-factorcopy KW - Corneal confocal microscopy KW - Factor messenger-RNA KW - Schwann-cells KW - Gene-expression KW - Receptors KW - Identification KW - Innervation KW - Mechanisms KW - Gland Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-227469 VL - 2018 IS - 2309108 ER - TY - JOUR A1 - Engel, Christoph A1 - Rhiem, Kerstin A1 - Hahnen, Eric A1 - Loibl, Sibylle A1 - Weber, Karsten E. A1 - Seiler, Sabine A1 - Zachariae, Silke A1 - Hauke, Jan A1 - Wappenschmidt, Barbara A1 - Waha, Anke A1 - Blümcke, Britta A1 - Kiechle, Marion A1 - Meindl, Alfons A1 - Niederacher, Dieter A1 - Bartram, Claus R. A1 - Speiser, Dorothee A1 - Schlegelberger, Brigitte A1 - Arnold, Norbert A1 - Wieacker, Peter A1 - Leinert, Elena A1 - Gehrig, Andrea A1 - Briest, Susanne A1 - Kast, Karin A1 - Riess, Olaf A1 - Emons, Günter A1 - Weber, Bernhard H. F. A1 - Engel, Jutta A1 - Schmutzler, Rita K. T1 - Prevalence of pathogenic BRCA1/2 germline mutations among 802 women with unilateral triple-negative breast cancer without family cancer history JF - BMC Cancer N2 - Background There is no international consensus up to which age women with a diagnosis of triple-negative breast cancer (TNBC) and no family history of breast or ovarian cancer should be offered genetic testing for germline BRCA1 and BRCA2 (gBRCA) mutations. Here, we explored the association of age at TNBC diagnosis with the prevalence of pathogenic gBRCA mutations in this patient group. Methods The study comprised 802 women (median age 40 years, range 19-76) with oestrogen receptor, progesterone receptor, and human epidermal growth factor receptor type 2 negative breast cancers, who had no relatives with breast or ovarian cancer. All women were tested for pathogenic gBRCA mutations. Logistic regression analysis was used to explore the association between age at TNBC diagnosis and the presence of a pathogenic gBRCA mutation. Results A total of 127 women with TNBC(15.8%) were gBRCA mutation carriers (BRCA1: n = 118, 14.7%; BRCA2: n = 9, 1. 1%). The mutation prevalence was 32.9% in the age group 20-29 years compared to 6.9% in the age group 60-69 years. Logistic regression analysis revealed a significant increase of mutation frequency with decreasing age at diagnosis (odds ratio 1.87 per 10 year decrease, 95% CI 1.50-2.32, p < 0.001). gBRCA mutation risk was predicted to be > 10% for women diagnosed below approximately 50 years. Conclusions Based on the general understanding that a heterozygous mutation probability of 10% or greater justifies gBRCA mutation screening, women with TNBC diagnosed before the age of 50 years and no familial history of breast and ovarian cancer should be tested for gBRCA mutations. In Germany, this would concern approximately 880 women with newly diagnosed TNBC per year, of whom approximately 150 are expected to be identified as carriers of a pathogenic gBRCA mutation. KW - hereditary breast and ovarian cancer KW - BRCA1 KW - BRCA2 KW - triple-negative breast cancer Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-226763 VL - 18 ER - TY - JOUR A1 - Rudovick, Ladius A1 - Brauner, Jan M. A1 - Englert, Johanna A1 - Seemann, Carolina A1 - Plugaru, Karina A1 - Kidenya, Benson R. A1 - Kalluvya, Samuel E. A1 - Scheller, Carsten A1 - Kasang, Christa T1 - Prevalence of pretreatment HIV drug resistance in Mwanza, Tanzania JF - Journal of Antimicrobial Chemotherapy N2 - Background: In a 2008-10 study, we found a pretreatment HIV drug resistance (PDR) prevalence of 18.2% in patients at Bugando Medical Centre (BMC) in Mwanza, Tanzania. Objectives: To determine the prevalence of PDR and transmitted HIV drug resistance (TDR) in patients visiting the BMC from 2013 to 2015. Methods: Adult outpatients were sequentially enrolled into two groups, separated by whether they were initiating ART. Previous exposure to antiretroviral drugs, except for prevention of mother-to-child transmission, was an exclusion criterion. HIV pol sequences were analysed according to WHO guidelines for surveillance of PDR and TDR. Results: Two hundred and thirty-five sequences were analysed (138 ART initiators, 97 non-initiators). The prevalence of PDR was 4.7% (95% CI 2.6%-8.2%) overall, 3.1% (95% CI 1.1%-8.7%) for non-initiators and 5.8% (95% CI 3.0%-11.0%) for ART initiators. PDR to NNRTIs and nucleoside or nucelotide reverse transcriptase inhibitors was found in 3.0% (95% CI 1.5%-6.0%) and 1.7% (95% CI 0.7%-4.3%) of patients, respectively. Resistance to PIs was not observed. The prevalence of TDR was 6.0% (95% CI 3.6%-9.8%). Conclusions: Prevalence of PDR significantly decreased compared with 2008-10 and was below the WHO-defined threshold for triggering a public health response. National and systematic surveillance is needed to inform Tanzania's public health strategy. KW - HIV KW - adult KW - anti-hiv agents KW - child KW - mothers KW - nucleosides KW - outpatients KW - reverse transcriptase inhibitors KW - tanzania KW - world health organization KW - guidelines KW - public health medicine KW - anti-retroviral agents KW - non-nucleoside reverse transcriptase inhibitors KW - surveillance KW - medical KW - exclusion criteria KW - prevention Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-227124 VL - 73 IS - 12 ER - TY - JOUR A1 - Ludwig, Heinz A1 - Delforge, Michel A1 - Facon, Thierry A1 - Einsele, Hermann A1 - Gay, Francesca A1 - Moreau, Philippe A1 - Avet-Loiseau, Hervé A1 - Boccadoro, Mario A1 - Hajek, Roman A1 - Mohty, Mohamad A1 - Cavo, Michele A1 - Dimopoulos, Meletios A A1 - San-Miguel, Jesús F A1 - Terpos, Evangelos A1 - Zweegman, Sonja A1 - Garderet, Laurent A1 - Mateos, María-Victoria A1 - Cook, Gordon A1 - Leleu, Xavier A1 - Goldschmidt, Hartmut A1 - Jackson, Graham A1 - Kaiser, Martin A1 - Weisel, Katja A1 - van de Donk, Niels W. C. J. A1 - Waage, Anders A1 - Beksac, Meral A1 - Mellqvist, Ulf H. A1 - Engelhardt, Monika A1 - Caers, Jo A1 - Driessen, Christoph A1 - Bladé, Joan A1 - Sonneveld, Pieter T1 - Prevention and management of adverse events of novel agents in multiple myeloma: a consensus of the European Myeloma Network JF - Leukemia N2 - During the last few years, several new drugs have been introduced for treatment of patients with multiple myeloma, which have significantly improved the treatment outcome. All of these novel substances differ at least in part in their mode of action from similar drugs of the same drug class, or are representatives of new drug classes, and as such present with very specific side effect profiles. In this review, we summarize these adverse events, provide information on their prevention, and give practical guidance for monitoring of patients and for management of adverse events. KW - disease prevention KW - myeloma Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-237338 VL - 32 ER - TY - THES A1 - Meininger [geb. Christ], Susanne T1 - Processing of calcium and magnesium phosphate cements for bone substitution T1 - Verarbeitung von Calcium- und Magnesiumphosphatzementen als Knochenersatz N2 - The main focus of this thesis was the processing of different calcium and magnesium phosphate cements together with an optimization of mechanical and biological properties. Therefore, different manufacturing techniques like 3D powder printing and centrifugally casting were employed for the fabrication of reinforced or biomedically improved implants. One of the main problems during 3D powder printing is the low green strength of many materials, especially when they are only physically bonded and do not undergo a setting reaction. Such materials need post-treatments like sintering to exhibit their full mechanical performance. However, the green bodies have to be removed from the printer requiring a certain stability. With the help of fiber reinforcement, the green strength of printed gypsum samples could be increased by the addition of polymeric and glass fibers within the printing process. The results showed that fiber reinforcement during 3D powder printing is possible and opens up diverse opportunities to enhance the damage tolerance of green bodies as well as directly printed samples. The transfer to biomedically relevant materials like calcium and magnesium phosphate cements and biocompatible fibers would be the next step towards reinforced patient-specific implants. In a second approach, centrifugally casting derived from construction industries was established for the fabrication of hollow bioceramic cylinders. The aim was the replacement of the diaphysis of long bones, which exhibit a tubular structure with a high density of cortical bone on the fringe. By centrifugation, cement slurries with and without additives could be fabricated to tubes. As a first establishment, the processing parameters regarding the material (e.g. cement composition) as well as the set-up (e.g. rotation times) had to be optimized for each system. In respect of mechanics, such tubes can keep up with 3D powder printed tubes, although the mechanical performance of 3D printed tubes is strongly dependent on printing directions. Additionally, some material compositions like dual setting systems cannot be fabricated by 3D powder printing. Therefore, a transfer of such techniques to centrifugally casting enabled the fabrication of tubular structures with an extremely high damage tolerance due to high deformation ability. A similar effect was achieved by fiber (mesh) addition, as already shown for 3D powder printing. Another possibility of centrifugally casting is the combination of different materials resulting in graded structures to adjust implant degradation or bone formation. This became especially apparent for the incorporation of the antibiotic vancomycin, which is used for the treatment of bacterial implant infections. A long-term release could be achieved by the entrapment of the drug between magnesium phosphate cement layers. Therefore, the release of the drug could be regulated by the degradation of the outer shell, which supports the release into an acidic bacterial environment. The centrifugally casting technique exhibited to be a versatile tool for numerous materials and applications including the fabrication of non-centrosymmetric patient-specific implants for the reconstruction of human long bones. The third project aimed to manufacture strontium-substituted magnesium phosphate implants with improved biological behavior by 3D powder printing. As the promoting effect of strontium on bone formation and the inhibitory impact on bone resorption is already well investigated, the incorporation of strontium into a degradable magnesium phosphate cement promised a fast integration and replacement of the implant. Porous structures were obtained with a high pore interconnectivity that is favorable for cell invasion and bone ingrowth. Despite the porosity, the mechanical performance was comparable to pure magnesium phosphate cement with a high reliability of the printed samples as quantitatively determined by Weibull statistics. However, the biological testing was impeded by the high degradation rate and the relating ion release. The high release of phosphate ions into surrounding media and the detachment of cement particles from the surface inhibited osteoblast growth and activity. To distinguish those two effects, a direct and indirect cell seeding is always required for degradable materials. Furthermore, the high phosphate release compared to the strontium release has to be managed during degradation such that the adverse effect of phosphate ions does not overwhelm the bone promoting effect of the strontium ions. The manufacturing techniques presented in this thesis together with the material property improvement offer a diverse tool box for the fabrication of patient-specific implants. This includes not just the individual implant shape but also the application like bone growth promotion, damage tolerance and local drug delivery. Therefore, this can act as the basis for further research on specific medical indications. N2 - Der Fokus dieser Dissertation lag auf der Verarbeitung von Calcium- und Magnesiumphosphatzementen zusammen mit der Optimierung mechanischer und biologischer Eigenschaften. Dazu wurden verschiedene Produktionsverfahren wie beispielsweise der 3D Pulverdruck und der Schleuderguss verwendet, um mechanisch verstärkte oder biomedizinisch verbesserte Implantate herzustellen. Eines der Hauptprobleme des 3D Pulverdrucks ist die geringe Festigkeit des Grünkörpers vieler Materialien, besonders wenn diese lediglich physikalisch gebunden sind und keine Abbindereaktion durchlaufen. Solche Materialien müssen nachbearbeitet werden, beispielsweise durch Sintern, um ihre volle mechanische Leistungsfähigkeit zu entfalten. Die Grünkörper müssen jedoch aus dem 3D Drucker entnommen werden können, was eine gewisse Stabilität erfordert. Mit Hilfe der Faserverstärkung konnte die Festigkeit von gedruckten Grünkörper aus Gips erhöht werden, indem Polymer- und Glasfasern innerhalb des Druckprozesses eingebracht wurden. Die Ergebnisse zeigten, dass Faserverstärkung innerhalb des 3D Pulverdrucks möglich ist und dabei vielfältige Möglichkeiten eröffnet, um die Schadenstoleranz von Grünkörpern wie auch von direkt gedruckten Proben zu verbessern. Der nächste Schritt hin zu verstärkten, patientenspezifischen Implantaten wäre die Übertragung auf biomedizinisch relevante Materialien wie Calcium- und Magnesiumphosphatzemente und biokompatible Fasern. In einem zweiten Ansatz wurde der aus dem Baugewerbe stammende Schleuderguss für die Herstellung hohler Zylinder aus Biokeramik etabliert. Das Ziel war es, die Diaphyse von Röhrenknochen zu ersetzen, die eine tubuläre Struktur mit einer hohen Dichte an kortikalem Knochen am Rand aufweist. Durch Zentrifugieren konnten Zementpasten mit und ohne Additive zu Röhren verarbeitet werden. Zunächst mussten dabei die Prozessparameter bezüglich Material (z.B. Zementzusammensetzung) ebenso wie bezüglich der Einstellungen (z.B. Rotationszeiten) für jedes System optimiert werden. Im Hinblick auf ihre mechanischen Eigenschaften können solche Röhren mit 3D pulvergedruckten Röhren mithalten, obwohl die mechanische Leistungsfähigkeit von 3D gedruckten Röhren stark von der Druckrichtung abhängt. Zusätzlich können einige Materialkombinationen wie dual-abbindende Systeme nicht mit 3D Pulverdruck verarbeitet werden. Daher ermöglicht eine Übertragung solcher Techniken auf den Schleuderguss die Fertigung tubulärer Strukturen mit extrem hoher Schadenstoleranz aufgrund hoher Verformbarkeit. Wie bereits für das 3D Pulverdrucken gezeigt, konnte ein ähnlicher Effekt durch die Zugabe von Fasern (Geweben) erzielt werden. Eine weitere Möglichkeit des Schleudergusses ist die Kombination verschiedener Materialien zu gradientenartigen Strukturen, um den Implantatabbau oder die Knochenbildung anzupassen. Dies war besonders wichtig für die Einbringung des Antibiotikums Vancomycin, das für die Behandlung bakterieller Implantatinfektionen eingesetzt wird. Eine Langzeitfreisetzung konnte durch den Einbau des Arzneistoffs zwischen Magnesiumphosphatschichten erreicht werden. Dadurch konnte die Freisetzung des Wirkstoffs durch den Abbau der äußeren Hülle geregelt werden, was die Freisetzung in das saure Milieu von Bakterien unterstützt. Der Schleuderguss erwies sich als vielseitiges Werkzeug für viele Materialien und Anwendungen, was die Herstellung von nicht-zentrosymmetrischen, patientenspezifischen Implantaten zur Rekonstruktion von menschlichem Röhrenknochen einschließt. Das dritte Projekt zielte auf die Herstellung Strontium-substituierter Magnesiumphosphatimplantaten mittels 3D Pulverdruck mit verbessertem biologischen Verhalten ab. Da die unterstützende Wirkung von Strontium auf die Knochenbildung und die Hemmung des Knochenabbaus bereits eingehend untersucht sind, versprach die Einbringung von Strontium in den abbaubaren Magnesiumphosphatzement eine schnelle Integration und Ersatz des Implantats. Es konnten poröse Strukturen mit einer hohen Poreninterkonnektivität erhalten werden, was förderlich für die Einwanderung von Zellen und das Einwachsen von Knochen ist. Neben der Porosität waren auch die mechanischen Eigenschaften vergleichbar mit reinem Magnesiumphosphatzement mit einer hohen Verlässlichkeit der gedruckten Proben, was quantitativ durch eine Weibullstatistik bestimmt wurde. Die biologische Testung wurde allerdings durch die hohe Degradationsrate und der damit einhergehenden Ionenfreisetzung erschwert. Die hohe Freisetzung von Phosphationen in das umgebende Medium und die Ablösung von Zementpartikeln von der Oberfläche verhinderten das Wachstum und Aktivität der Osteoblasten. Um diese beiden Effekte voneinander unterscheiden zu können, war eine direkte und indirekte Zellbesiedelung der abbaubaren Materialien notwendig. Des Weiteren muss die hohe Phosphatfreisetzung im Vergleich zur Strontiumfreisetzung während des Abbaus derart gesteuert werden, dass die negativen Effekte der Phosphationen nicht die Förderung des Knochenaufbaus durch Strontiumionen überwiegen. Die in dieser Dissertation dargestellten Fertigungstechniken zusammen mit der Verbesserung der Materialeigenschaften bieten eine vielfältige Palette zur Herstellung patientenspezifischer Implantate. Dies beinhaltet nicht nur eine individuelle Implantatgeometrie, sondern auch eine Verbesserung der Schadenstoleranz, die Förderung des Knochenwachstums sowie eine lokale Wirkstofffreisetzung. Daher kann diese Arbeit als Grundlage für weitere Forschung im Bereich spezifischer, medizinischer Indikationen dienen. KW - Calciumphosphate KW - Knochenzemente KW - 3D powder printing KW - Schleuderguss KW - Knochenersatz KW - centrifugally casting Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-169126 ER - TY - JOUR A1 - Sperlich, Billy A1 - De Clerck, Ine A1 - Zinner, Christoph A1 - Holmberg,, Hans-Christer A1 - Wallmann-Sperlich, Birgit T1 - Prolonged sitting interrupted by 6-min of high-intensity exercise: circulatory, metabolic, hormonal, thermal, cognitive, and perceptual responses JF - Frontiers in Physiology N2 - The aim was to examine certain aspects of circulatory, metabolic, hormonal, thermoregulatory, cognitive, and perceptual responses while sitting following a brief session of high-intensity interval exercise. Twelve students (five men; age, 22 ± 2 years) performed two trials involving either simply sitting for 180 min (SIT) or sitting for this same period with a 6-min session of high-intensity exercise after 60 min (SIT+HIIT). At T\(_0\) (after 30 min of resting), T\(_1\) (after a 20-min breakfast), T\(_2\) (after sitting for 1 h), T\(_3\) (immediately after the HIIT), T\(_4\), T\(_5\), T\(_6\), and T\(_7\) (30, 60, 90, and 120 min after the HIIT), circulatory, metabolic, hormonal, thermoregulatory, cognitive, and perceptual responses were assessed. The blood lactate concentration (at T\(_3\)–T\(_5\)), heart rate (at T\(_3\)–T\(_6\)), oxygen uptake (at T\(_3\)–T\(_7\)), respiratory exchange ratio, and sensations of heat (T\(_3\)–T\(_5\)), sweating (T\(_3\), T\(_4\)) and odor (T\(_3\)), as well as perception of vigor (T\(_3\)–T\(_6\)), were higher and the respiratory exchange ratio (T\(_4\)–T\(_7\)) and mean body and skin temperatures (T\(_3\)) lower in the SIT+HIIT than the SIT trial. Levels of blood glucose and salivary cortisol, cerebral oxygenation, and feelings of anxiety/depression, fatigue or hostility, as well as the variables of cognitive function assessed by the Stroop test did not differ between SIT and SIT+HIIT. In conclusion, interruption of prolonged sitting with a 6-min session of HIIT induced more pronounced circulatory and metabolic responses and improved certain aspects of perception, without affecting selected hormonal, thermoregulatory or cognitive functions. KW - inactivity KW - high-intensity interval training KW - sedentary lifestyle KW - students KW - workplace KW - intervention KW - physical activity KW - health promotion Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-177307 VL - 9 IS - 1279 ER - TY - JOUR T1 - Prompt and non-prompt \(J\)/\(ψ\) and \(ψ\)(2S) suppression at high transverse momentum in 5.02 TeV Pb+Pb collisions with the ATLAS experiment JF - European Physical Journal C N2 - A measurement of J/psi and psi(2S) production is presented. It is based on a data sample from Pb+Pb collisions at root s(NN) = 5.02 TeV and pp collisions at root s = 5.02 TeV recorded by the ATLAS detector at the LHC in 2015, corresponding to an integrated luminosity of 0.42 nb(-1) and 25 pb(-1) in Pb+Pb and pp, respectively. The measurements of per-event yields, nuclear modification factors, and non-prompt fractions are performed in the dimuon decay channel for 9 < p(T)(mu mu) < 40 GeV in dimuon transverse momentum, and -2 < y(mu mu) < 2 in rapidity. Strong suppression is found in Pb+Pb collisions for both prompt and non-prompt J/psi, increasing with event centrality. The suppression of prompt psi(2S) is observed to be stronger than that of J/psi, while the suppression of non-prompt psi(2S) is equal to that of the non-prompt J/psi within uncertainties, consistent with the expectation that both arise from b-quarks propagating through the medium. Despite prompt and non-prompt J/psi arising from different mechanisms, the dependence of their nuclear modification factors on centrality is found to be quite similar. KW - PB-PB Collisions KW - Quarkonium Production KW - Monte-Carlo KW - Nuclear KW - Charmonia KW - Rapidity Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-226056 VL - 78 ER - TY - JOUR A1 - Abt, Raimond A1 - Erdmenger, Johanna T1 - Properties of modular Hamiltonians on entanglement plateaux JF - Journal of High Energy Physics N2 - The modular Hamiltonian of reduced states, given essentially by the logarithm of the reduced density matrix, plays an important role within the AdS/CFT correspondence in view of its relation to quantum information. In particular, it is an essential ingredient for quantum information measures of distances between states, such as the relative entropy and the Fisher information metric. However, the modular Hamiltonian is known explicitly only for a few examples. For a family of states rho(lambda) that is parametrized by a scalar lambda, the first order contribution in (lambda) over tilde = lambda-lambda(0) of the modular Hamiltonian to the relative entropy between rho(lambda) and a reference state rho(lambda 0) is completely determined by the entanglement entropy, via the first law of entanglement. For several examples, e.g. for ball-shaped regions in the ground state of CFTs, higher order contributions are known to vanish. In these cases the modular Hamiltonian contributes to the Fisher information metric in a trivial way. We investigate under which conditions the modular Hamiltonian provides a non-trivial contribution to the Fisher information metric, i.e. when the contribution of the modular Hamiltonian to the relative entropy is of higher order in (lambda) over tilde. We consider one-parameter families of reduced states on two entangling regions that form an entanglement plateau, i.e. the entanglement entropies of the two regions saturate the Araki-Lieb inequality. We show that in general, at least one of the relative entropies of the two entangling regions is expected to involve (lambda) over tilde contributions of higher order from the modular Hamiltonian. Furthermore, we consider the implications of this observation for prominent AdS/CFT examples that form entanglement plateaux in the large N limit. KW - AdS-CFT Correspondence KW - Gauge-gravity correspondence KW - Conformal Field Theory KW - Relative Entropy KW - Complexity Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-227693 VL - 11 IS - 2 ER - TY - JOUR A1 - Adam, Alexander A1 - Deimel, Stephan A1 - Pardo-Medina, Javier A1 - García-Martínez, Jorge A1 - Konte, Tilen A1 - Limón, M. Carmen A1 - Avalos, Javier A1 - Terpitz, Ulrich T1 - Protein activity of the \(Fusarium\) \(fujikuroi\) rhodopsins CarO and OpsA and their relation to fungus−plant interaction JF - International Journal of Molecular Sciences N2 - Fungi possess diverse photosensory proteins that allow them to perceive different light wavelengths and to adapt to changing light conditions in their environment. The biological and physiological roles of the green light-sensing rhodopsins in fungi are not yet resolved. The rice plant pathogen Fusarium fujikuroi exhibits two different rhodopsins, CarO and OpsA. CarO was previously characterized as a light-driven proton pump. We further analyzed the pumping behavior of CarO by patch-clamp experiments. Our data show that CarO pumping activity is strongly augmented in the presence of the plant hormone indole-3-acetic acid and in sodium acetate, in a dose-dependent manner under slightly acidic conditions. By contrast, under these and other tested conditions, the Neurospora rhodopsin (NR)-like rhodopsin OpsA did not exhibit any pump activity. Basic local alignment search tool (BLAST) searches in the genomes of ascomycetes revealed the occurrence of rhodopsin-encoding genes mainly in phyto-associated or phytopathogenic fungi, suggesting a possible correlation of the presence of rhodopsins with fungal ecology. In accordance, rice plants infected with a CarO-deficient F. fujikuroi strain showed more severe bakanae symptoms than the reference strain, indicating a potential role of the CarO rhodopsin in the regulation of plant infection by this fungus. KW - fungal rhodopsins KW - CarO KW - OpsA KW - Fusarium fujikuroi KW - Oryza sativa KW - rice–plant infection KW - green light perception KW - indole-3-acetic acid (IAA) KW - bakanae KW - patch-clamp Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-285125 SN - 1422-0067 VL - 19 IS - 1 ER - TY - INPR A1 - Löffler, Mona C. A1 - Mayer, Alexander E. A1 - Trujillo Viera, Jonathan A1 - Loza Valdes, Angel A1 - El-Merahib, Rabih A1 - Ade, Carsten P. A1 - Karwen, Till A1 - Schmitz, Werner A1 - Slotta, Anja A1 - Erk, Manuela A1 - Janaki-Raman, Sudha A1 - Matesanz, Nuria A1 - Torres, Jorge L. A1 - Marcos, Miguel A1 - Sabio, Guadalupe A1 - Eilers, Martin A1 - Schulze, Almut A1 - Sumara, Grzegorz T1 - Protein kinase D1 deletion in adipocytes enhances energy dissipation and protects against adiposity T2 - The EMBO Journal N2 - Nutrient overload in combination with decreased energy dissipation promotes obesity and diabetes. Obesity results in a hormonal imbalance, which among others, activates G-protein coupled receptors utilizing diacylglycerol (DAG) as secondary messenger. Protein kinase D1 (PKD1) is a DAG effector which integrates multiple nutritional and hormonal inputs, but its physiological role in adipocytes is unknown. Here, we show that PKD1 promotes lipogenesis and suppresses mitochondrial fragmentation, biogenesis, respiration, and energy dissipation in an AMP-activated protein kinase (AMPK)-dependent manner. Moreover, mice lacking PKD1 in adipocytes are resistant to diet-induced obesity due to elevated energy expenditure. Beiging of adipocytes promotes energy expenditure and counteracts obesity. Consistently, deletion of PKD1 promotes expression of the β3-adrenergic receptor (ADRB3) in a CCAAT/enhancerbinding protein (C/EBP)-α and δ-dependent manner, which leads to the elevated expression of beige markers in adipocytes and subcutaneous adipose tissue. Finally, deletion of PKD1 in adipocytes improves insulin sensitivity and ameliorates liver steatosis. Thus, loss of PKD1 in adipocytes increases energy dissipation by several complementary mechanisms and might represent an attractive strategy to treat obesity and its related complications. KW - AMP-activated protein kinase (AMPK) KW - Beige adipocytes KW - β3 adrenergic receptor (ADRB3) KW - C/EBP KW - Protein kinase D1 (PKD1) Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-176093 ER - TY - JOUR A1 - Hammer, Eva M. A1 - Halder, Sebastian A1 - Kleih, Sonja C. A1 - Kübler, Andrea T1 - Psychological Predictors of Visual and Auditory P300 Brain-Computer Interface Performance JF - Frontiers in Neuroscience N2 - Brain-Computer Interfaces (BCIs) provide communication channels independent from muscular control. In the current study we used two versions of the P300-BCI: one based on visual the other on auditory stimulation. Up to now, data on the impact of psychological variables on P300-BCI control are scarce. Hence, our goal was to identify new predictors with a comprehensive psychological test-battery. A total of N = 40 healthy BCI novices took part in a visual and an auditory BCI session. Psychological variables were measured with an electronic test-battery including clinical, personality, and performance tests. The personality factor “emotional stability” was negatively correlated (Spearman's rho = −0.416; p < 0.01) and an output variable of the non-verbal learning test (NVLT), which can be interpreted as ability to learn, correlated positively (Spearman's rho = 0.412; p < 0.01) with visual P300-BCI performance. In a linear regression analysis both independent variables explained 24% of the variance. “Emotional stability” was also negatively related to auditory P300-BCI performance (Spearman's rho = −0.377; p < 0.05), but failed significance in the regression analysis. Psychological parameters seem to play a moderate role in visual P300-BCI performance. “Emotional stability” was identified as a new predictor, indicating that BCI users who characterize themselves as calm and rational showed worse BCI performance. The positive relation of the ability to learn and BCI performance corroborates the notion that also for P300 based BCIs learning may constitute an important factor. Further studies are needed to consolidate or reject the presented predictors. KW - predictors KW - visual P300-BCI KW - auditory P300-BCI KW - NVLT KW - emotional stability Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-369207 VL - 12 ER - TY - THES A1 - Dinh-Xuan, Lam T1 - Quality of Experience Assessment of Cloud Applications and Performance Evaluation of VNF-Based QoE Monitoring T1 - Quality of Experience-Bewertung von Cloud-Anwendungen und Leistungsbewertung von VNF-basiertem QoE-Monitoring N2 - In this thesis various aspects of Quality of Experience (QoE) research are examined. The work is divided into three major blocks: QoE Assessment, QoE Monitoring, and VNF Performance Evaluation. First, prominent cloud applications such as Google Docs and a cloud-based photo album are explored. The QoE is characterized and the influence of packet loss and delay is studied. Afterwards, objective QoE monitoring for HTTP Adaptive Video Streaming (HAS) in the cloud is investigated. Additionally, by using a Virtual Network Function (VNF) for QoE monitoring in the cloud, the feasibility of an interworking of Network Function Virtualization (NFV) and cloud paradigm is evaluated. To this end, a VNF that exploits deep packet inspection technique was used to parse the video traffic. An algorithm is then designed accordingly to estimate video quality and QoE based on network and application layer parameters. To assess the accuracy of the estimation, the VNF is measured in different scenarios under different network QoS and the virtual environment of the cloud architecture. The insights show that the different geographical deployments of the VNF influence the accuracy of the video quality and QoE estimation. Various Service Function Chain (SFC) placement algorithms have been proposed and compared in the context of edge cloud networks. On the one hand, this research is aimed at cloud service providers by providing methods for evaluating QoE for cloud applications. On the other hand, network operators can learn the pitfalls and disadvantages of using the NFV paradigm for such a QoE monitoring mechanism. N2 - In dieser Arbeit werden verschiedene Aspekte von Quality of Experience (QoE) und QoE-Monitoring untersucht. Die Arbeit teilt sich in drei große Blöcke auf: QoE Assessment, QoE Monitoring und Leistungsuntersuchung einer VNF. Zunächst werden prominente Cloud-Anwendungen wie Google Docs und ein Cloud-basiertes Photoalbum untersucht. Die QoE wird charakterisiert und es wird der Einfluss von Paketverlust und Delay studiert. Danach wird das objektive QoE-Monitoring für HTTP Adaptive Video Streaming (HAS) in der Cloud untersucht. Durch die Verwendung einer virtuellen Netzwerkfunktion (Virtual Network Function, VNF) für die QoE-Überwachung in der Cloud wurde außerdem die Durchführbarkeit eines Zusammenwirkens von Netzwerkfunktionsvirtualisierung (NFV) und Cloud-Paradigma bewertet. Zu diesem Zweck wurde der VNF, die die Deep-Packet-Inspection-Technik benutzt, zum Parsen des Videoverkehrs verwendet. Im Anschluss wurde ein Algorithmus entworfen, um die Videoqualität und die QoE basierend auf Netzwerk- und Anwendungsschichtparametern zu schätzen. Um die Genauigkeit der Schätzung zu bewerten, wurde die VNF in verschiedenen Szenarien unter verschiedener Netzwerk-QoS und der virtuellen Umgebung der Cloud-Architektur gemessen. Die Erkenntnisse zeigen, dass die unterschiedlichen geografischen Implementierungen der VNF die Genauigkeit der Schätzung der Videoqualität und QoE beeinflussen. Es wurden verschiedene Platzierungsalgorithmen der Service Function Chain (SFC) vorgeschlagen und im Kontext von Edge-Cloud-Netzwerken verglichen. Diese Forschungsarbeit zielt zum einen auf Cloud-Service-Provider ab, indem ihnen Methoden zur Bewertung der QoE für Cloud-Anwendungen zur Verfügung gestellt werden. Auf der anderen Seite können die Netzwerkbetreiber die Fallstricke und Nachteile der Anwendung des NFV-Paradigmas für einen solchen QoE-Überwachungsmechanismus erlernen. T3 - Würzburger Beiträge zur Leistungsbewertung Verteilter Systeme - 01/18 KW - Quality of Experience KW - QoE Monitoring KW - Netzwerk KW - Virtualisierung KW - Network Function Virtualization KW - Performance Evaluation KW - Leistungsbewertung Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-169182 SN - 1432-8801 ER - TY - JOUR A1 - Reinhold, Ann Kristin A1 - Schwabe, Joachim A1 - Lux, Thomas J. A1 - Salvador, Ellaine A1 - Rittner, Heike L. T1 - Quantitative and Microstructural Changes of the Blood-Nerve Barrier in Peripheral Neuropathy JF - Frontiers in Neuroscience N2 - Peripheral neuropathy is accompanied by changes in the neuronal environment. The blood-nerve barrier (BNB) is crucial in protecting the neural homeostasis: Tight junctions (TJ) seal paracellular spaces and thus prevent external stimuli from entering. In different models of neuropathic pain, the BNB is impaired, thus contributing to local damage, immune cell invasion and, ultimately, the development of neuropathy with its symptoms. In this study, we examined changes in expression and microstructural localization of two key tight junction proteins (TJP), claudin-1 and the cytoplasmic anchoring ZO-1, in the sciatic nerve of mice subjected to chronic constriction injury (CCI). Via qPCR and analysis of fluorescence immunohistochemistry, a marked downregulation of mRNA as well as decreased fluorescence intensity were observed in the nerve for both proteins. Moreover, a distinct zig-zag structure for both proteins located at cell-cell contacts, indicative of the localization of TJs, was observed in the perineurial compartment of sham-operated animals. This microstructural location in cell-cell-contacts was lost in neuropathy as semiquantified via computational analysis, based on a novel algorithm. In summary, we provide evidence that peripheral neuropathy is not only associated with decrease in relevant TJPs but also exhibits alterations in TJP arrangement and loss in barrier tightness, presumably due to internalization. Specifically, semiquantification of TJP in cell-cell-contacts of microcompartments could be used in the future for routine clinical samples of patients with neuropathy. KW - neuropathic pain KW - chronic constriction injury KW - blood-nerve barrier KW - tight junction protein KW - claudin-1 KW - ZO-1 KW - Expression KW - Pain Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-225179 VL - 12 ER - TY - JOUR A1 - Gilbert, F. A1 - Heintel, T. M. A1 - Jakubietz, M. G. A1 - Köstler, H. A1 - Sebald, C. A1 - Meffert, R. H. A1 - Weng, A. M. T1 - Quantitative MRI comparison of multifidus muscle degeneration in thoracolumbar fractures treated with open and minimally invasive approach JF - BMC Musculoskeletal Disorders N2 - Background: Minimally invasive pedicle screw fixation has less approach-related morbidity than open screw placement and is allegedly less traumatizing on paravertebral muscles, as there is no requirement to mobilize and retract the adjacent muscle portion. The approach-related long-term effects to the morphology of the paravertebral muscles are unknown. The purpose of this study was to compare the long-term amount of fatty degeneration of the multifidus muscle in patients treated with a classical open or a minimally invasive approach. Methods: Fourteen Patients meeting inclusion criteria were selected. In all patients a singular fracture of the thoracolumbar spine with a two-level posterior instrumentation was treated, either using an open approach or a minimally invasive approach. All patients underwent quantitative MRI spectroscopy for quantification of the fatty degeneration in the multifidus muscle as a long-term proof for muscle loss after minimum 4-year follow-up. Clinical outcome was assessed using Oswestry Low Back Pain Disability Questionnaire, SF-36 and VA-scale for pain. Results: The minimally invasive approach group failed to show less muscle degeneration in comparison to the open group. Total amount of fatty degeneration was 14.22% in the MIS group and 12.60% in the open group (p = 0.64). In accordance to MRI quantitative results there was no difference in the clinical outcome after a mean follow up of 5.9 years (±1.8). Conclusion: As short-term advantages of minimal invasive screw placement have been widely demonstrated, no advantage of the MIS, displaying a significant difference in the amount of fatty degeneration and resulting in a better clinical outcome could be found. Besides the well-known short-term advantage of minimally invasive pedicle screw placement, a long-term advantage, such as less muscle degeneration and thus superior clinical results, compared to the open approach could not be shown. KW - dorsal instrumentation KW - minimal invasive surgery KW - muscle degeneration KW - spine trauma Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-175742 VL - 19 IS - 75 ER - TY - THES A1 - Bendias, Michel Kalle T1 - Quantum Spin Hall Effect - A new generation of microstructures T1 - Quantum Spin Hall Effekt - Eine neue Generation an Mikrostrukturen N2 - The presented thesis summarizes the results from four and a half years of intense lithography development on (Cd,Hg)Te/HgTe/(Cd,Hg)Te quantum well structures. The effort was motivated by the unique properties of this topological insulator. Previous work from Molenkamp at al.\ has proven that the transport through such a 2D TI is carried by electrons with opposite spin, counter-propagating in 1D channels along the sample edge. However, up to this thesis, the length of quantized spin Hall channels has never been reported to exceed 4 µm. Therefore, the main focus was put on a reproducible and easy-to-handle fabrication process that reveals the intrinsic material parameters. Every single lithography step in macro as well as microscopic sample fabrication has been re-evaluated. In the Development, the process changes have been presented along SEM pictures, microgaphs and, whenever possible, measurement responses. We have proven the conventional ion milling etch method to damage the remaining mesa and result in drastically lower electron mobilities in samples of microscopic size. The novel KI:I2:HBr wet etch method for macro and microstructure mesa fabrication has been shown to leave the crystalline structure intact and result in unprecedented mobilities, as high as in macroscopic characterization Hall bars. Difficulties, such as an irregular etch start and slower etching of the conductive QW have been overcome by concentration, design and etch flow adaptations. In consideration of the diffusive regime, a frame around the EBL write field electrically decouples the structure mesa from the outside wafer. As the smallest structure, the frame is etched first and guarantees a non-different etching of the conductive layer during the redox reaction. A tube-pump method assures reproducible etch results with mesa heights below 300 nm. The PMMA etch mask is easy to strip and leaves a clean mesa with no redeposition. From the very first attempts, to the final etch process, the reader has been provided with the characteristics and design requirements necessary to enable the fabrication of nearly any mesa shape within an EBL write field of 200 µm. Magneto resistance measurement of feed-back samples have been presented along the development chronology of wet etch method and subsequent lithography steps. With increasing feature quality, more and more physics has been revealed enabling detailed evaluation of smallest disturbances. The following lithography improvements have been implemented. They represent a tool-box for high quality macro and microstructure fabrication on (CdHg)Te/HgTe of almost any kind. The optical positive resist ECI 3027 can be used as wet and as dry etch mask for structure sizes larger than 1 µm. It serves to etch mesa structures larger than the EBL write field. The double layer PMMA is used for ohmic contact fabrication within the EBL write field. Its thickness allows to first dry etch the (Cd,Hg)Te cap layer and then evaporate the AuGe contact, in situ and self-aligned. Because of an undercut, up to 300 nm can be metalized without any sidewalls after the lift-off. An edge channel mismatch within the contact leads can be avoided, if the ohmic contacts are designed to reach close to the sample and beneath the later gate electrode. The MIBK cleaning step prior to the gate application removes PMMA residuals and thereby improves gate and potential homogeneity. The novel low HfO2-ALD process enables insulator growth into optical and EBL lift-off masks of any resolvable shape. Directly metalized after the insulator growth, the self-aligned method results in thin and homogeneous gate electrode reproducibly withholding gate voltages to +-10 V. The optical negative resist ARN 4340 exhibits an undercut when developed. Usable as dry etch mask and lift-off resist, it enables an in-situ application of ohmic contacts first etching close to the QW, then metalizing AuGe. Up to 500 nm thickness, the undercut guarantees an a clean lift-off with no sidewalls. The undertaken efforts have led to micro Hall bar measurements with Hall plateaus and SdH-oszillations in up to now unseen levels of detail. The gap resistance of several micro Hall bars with a clear QSH signal have been presented in Quantum Spin Hall. The first to exhibit longitudinal resistances close to the expected h/2e2 since years, they reveal unprecedented details in features and characteristics. It has been shown that their protection against backscattering through time reversal symmetry is not as rigid as previously claimed. Values below and above 12.9 kΩ been explained, introducing backscattering within the Landauer-Büttiker formalism of edge channel transport. Possible reasons have been discussed. Kondo, interaction and Rashba-backscattering arising from density inhomogeneities close to the edge are most plausible to explain features on and deviations from a quantized value. Interaction, tunneling and dephasing mechanisms as well as puddle size, density of states and Rashba Fields are gate voltage dependent. Therefore, features in the QSH signal are fingerprints of the characteristic potential landscape. Stable up to 11 K, two distinct but clear power laws have been found in the higher temperature dependence of the QSH in two samples. However, with ΔR = Tα, α = ¼ in one (QC0285) and α = 2 in the other (Q2745), none of the predicted dependencies could be confirmed. Whereas, the gap resistances of QC0285 remains QSH channel dominated up to 3.9 T and thereby confirmed the calculated lifting of the band inversion in magnetic field. The gate-dependent oscillating features in the QSH signal of Q2745 immediately increase in magnetic field. The distinct field dependencies allowed the assumption of two different dominant backscattering mechanisms. Resulting in undisturbed magneto transport and unprecedented QSH measurements The Novel Micro Hall Bar Process has proven to enable the fabrication of a new generation of microstructures. N2 - In der vorliegenden Dissertation wurden die Ergebnisse von viereinhalb Jahren lithographischer Prozessentwicklung an (Cd,Hg)Te/HgTe/(Cd,Hg)Te Quantum Well Strukturen präsentiert. Motiviert wurde der Aufwand mit den einzigartigen Eigenschaften des zweidimensionalen Topologischen Isolators. In früheren Arbeiten von Molenkamp et al. ist gezeigt worden, dass der Stromtransport im Quantum Spin Hall (QSH) Regime durch zwei Randkanäle mit Elektronen entgegengerichteter Spin- und Propagationsrichtung erfolgt. Trotz der Vorhersage geschützten Randkanaltransports durch Zeit-Umkehr Invarianz, gab es bis zu der hier vorgenommenen Prozessoptimierung keine ungestörten Quantum Spin Hall Messungen oberhalb einer Länge von 4 µm. Deswegen wurde das Hauptaugenmerk der Entwicklung auf einen möglichst einfachen, reproduzierbaren und ungestörten Herstellungsprozess für QSH Mikrostrukturen gelegt. Die Ergebnisse der vollständigen Überarbeitung jedes einzelnen Lithographie-Schrittes für marko- und mikroskopische Probenstrukturierung wurden in Development erläutert. Die Anpassungen wurden anhand von Elektronen-, Lichtmikroskop-Aufnahmen und wann immer möglich auch Messungen motiviert, überprüft und für besser befunden. Es wurde aufgezeigt, dass das bisher übliche Verfahren zum ätzen der Mesa mit beschleunigen Argon-Ionen das Material auch lateral beschädigt und mit drastisch reduzierten Elektronen-Beweglichkeiten in mikroskopischen Proben einhergeht. Ein neuartiger KI:I2:HBr nass-Ätzprozess hingegen, hat sich als nicht invasiv erwiesen. Ohne die Kristallstruktur zu zerstören lassen sich damit Mikrostrukturen herstellen, welche sich durch beispiellos hohe Beweglichkeiten und Signalgüte auszeichnen. Schwierigkeiten, wie der unregelmäßige Ätz-Start und das langsamere Ätzen der leitfähigen Schicht sind durch Konzentrations-, Design- und Flussanpassungen sukzessive gelöst worden. Unter Beachtung des diffusiven Ätz-Charakters, sorgt ein schmaler Rahmen um das Schreibfeld des Elektronen Mikroskops für eine elektrische Entkopplung der späteren Mesa innen, mit dem Elektronen-Reservoir außen. Damit wird sichergestellt, dass die Leitfähigkeit des Quantentroges in der Redoxreaktion des Ätzens eine untergeordnete Rolle spielt. Durch den regulierbaren Fluss einer Schlauchpumpe lassen sich so reproduzierbar saubere Mesas auch unterhalb 300 nm Höhe herstellen. Die PMMA Ätzmaske kann rückstandsfrei entfernen werden. Über die ersten Versuche, bis hin zum letztendlichen Prozess, wurde dem Leser dabei das notwendige Wissen und Verständnis zur Durchführung der Mikrostrukturierung an die Hand gegeben. Unter Beachtung der charakteristischen Eigenheiten des nasschemischen Prozesses, lassen sich so nahezu alle Mesa-Formen innerhalb eines 200x200 µm2 Schreibfeldes realisieren. Anhand von Hall-Messungen an Kontrollproben, wurde die sukzessive Erhöhung der Probenqualität durch den Ätzprozess und die vollständige Überarbeitung der darauf folgenden Lithographie-Prozesse bewiesen. Mit mehr und mehr Physik in den Messungen haben sich selbst kleine Auswirkungen des Lithographie-Prozesses auf die Probeneigenschaften testen lassen. Die folgenden Verbesserungen tragen maßgeblich zu diesem Ergebnis bei. Hier angewendet auf Mikro-Hall-Bars, lassen sich die Prozesse für die Herstellung fast jedweder Struktur auf (Cd,Hg)Te/HgTe anpassen. Der optische positiv Photo-Lack ECI 3027 kann sowohl als Nass- und auch Trockenätzmaske verwendet werden. Mit einer minimalen Auflösung größer 1 µ m wurde er hier eingesetzt, um Strukturen um das Elektronenmikroskop-Schreibfeld zu ätzen. Der PMMA Doppellagen Resist ist dick und weist nach dem Entwickeln ein unterhöhltes Lackprofil auf. Dies erlaubt ihn zuerst zum Heranätzen und dann zum Metallisieren der Ohmschen Kontakte zu nutzen. Bis zu 300 nm Metall können dabei ohne Überhöhungen in-situ und selbstjustierend aufgebracht werden. Es wurde gezeigt, dass Kontakte nahe der Hall-Bar bis unterhalb der späteren Gate-Elektrode, in höheren Magnetfeldern nicht zu Störungen der Messung führen. Der MIBK Reinigungs Schritt vor dem Aufbringen der Gate-Elektrode entfernt PMMA Rückstände vorheriger Prozesse. In Hall-Messungen wurde gezeigt, dass dies die Homogenität des Gate-Einflusses deutlich verbessert. Der neuartige Tieftemperatur HfO2 ALD Prozess ermöglicht Isolator Wachstum auf Photo-Resist und PMMA Lift-off Masken. Dies wiederum ermöglicht eine Gate-Metallisierung direkt im Anschluss. Dadurch lassen sich auch kleine Gate-Elektroden mit homogenem Potential-Einfluss herstellen, welche reproduzierbar Spannungen bis +-10 V aushalten. Der optische negativ Photo-Lack ARN 4340 ermöglicht das Heranätzen und Metallisieren von Ohmschen Kontakten in Strukturgrößen größer 1 µm. Das ebenfalls unterhöhlte Lackprofil erlaubt dabei die Aufbringung von bis zu 500 nm dicken Schichten und einen problemlosen Lift-off. Die unternommenen Anstrengungen haben dabei zu den bisher Besten und Detailsreichsten Messungen von Hall-Plateaus und Shubnikov-De Haas Oszillationen in (Cd,Hg)Te/ HgTe Mikrostrukturen geführt. Messungen mit einem klaren QSH Signal im Längswiderstand von mehreren Mikro-Hall-Bars wurden präsentiert. Nach jahrelangen Bemühungen weisen diese Proben erstmalig wieder einen Bandlücken-Widerstand nahe der erwarteten Quantisierung von zwei Randkanälen auf. Es wurde aufgezeigt, dass die vermeintliche geschützten Randzustände durchaus rück-streuen. Mit der Implementierung von Streuern im Landauer-Büttiker Formalismus für Randkanaltransport lassen sich Abweichungen unter- und oberhalb der erwarteten 12.9 kΩ begründen. Als mögliche Ursachen wurden Dichte-Inhomogenitäten ausgemacht, welche in Kondo-, Wechselwirkungs- und Rashba-Rückstreuprozessen resultieren. Im komplexen Zusammenspiel von Wechselwirkung, Tunnelprozessen und Spin-Dephasierung, der unbekannten Verteilung von Inhomogenitäten, ihrer Größe und Dichte sowie der Feldabhängig-keit aller Parameter, hat sich keiner der diskutierten Mechanismen als dominant bewiesen. In noch nie dagewesenen Details erwies sich die Gate- und Magnetfeldabhängigkeit des QSH Signals als ein Fingerabdruck der hintergründigen Potential-Landschaft. Die Signale von zwei unterschiedlichen Proben sind Temperatur- und Magnetfeldabhängig untersucht worden. Dabei haben mehrere Argumente zu der Schlussfolgerung geführt, dass unterschiedliche Rückstreumechanismen in den Proben dominieren: Mit einem flachen QSH Plateau in der einen (QC0285), und in Gate-Spannung oszillierender Merkmale auf dem QSH Signal der anderen Probe (Q2745), zeigen sich erste Unterschiede bereits in den Gate-Messungen. In Temperatur-abhängigen Messungen erweist sich deren QSH Signal zwar als stabil bis 11\,K, folgt dann aber ΔR = Tα mit α = 1/4 in QC0285 und α = 2 in Q2745. Im Magnetfeld bleibt die Bandlücke in QC0285 bis zum kritischen Feld der Invertierungsaufhebung Randkanal-Transport dominiert. Die Oszillierenden Merkmale auf dem QSH Signal in Q2745 dagegen, reagieren schon auf kleine Felder mit einer Erhöhung im Widerstand. Die unvergleichliche Qualität der hier präsentierten Hall-Messungen und QSH Signale und das bis ins letzte Detail optimierte Herstellungsverfahren, rechtfertigen es von einer neuen Generation an QSH Mikrostrukturen zu sprechen. KW - Topological insulators KW - Quecksilbertellurid KW - Quantum Spin Hall Effect KW - Lithography KW - Macroscopic transport KW - Quecksilbertellurid KW - Topologischer Isolator KW - Quanten-Hall-Effekt Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-168214 ER - TY - THES A1 - Albert, Julian T1 - Quantum Studies on Low-Dimensional Coupled Electron-Nuclear Dynamics T1 - Quantentheoretische Untersuchungen niederdimensionaler gekoppelter Elektronen-Kern-Dynamik N2 - In the context of quantum mechanical calculations, the properties of non-adiabatic coupling in a small system, the Shin-Metiu model, is investigated. The transition from adiabatic to non-adiabatic dynamics is elucidated in modifying the electron-nuclear interaction. This allows the comparison of weakly correlated electron-nuclear motion with the case where the strong correlations determine the dynamics. The studies of the model are extended to include spectroscopical transitions being present in two-dimensional and degenerate four-wave mixing spectroscopy. Furthermore, the quantum and classical time-evolution of the coupled motion in the complete electron-nuclear phase space is compared for the two coupling cases. Additionally, the numerically exact electron flux within the weak coupling case is compared to the Born-Oppenheimer treatment. In the last part of the thesis, the model is extended to two dimensions. The system then possesses potential energy surfaces which exhibit a typical 'Mexican hat'-like structure and a conical intersection in the adiabatic representation. Thus, it is possible to map properties of the system onto a vibronic coupling (Jahn-Teller) hamiltonian. Exact wave-packet propagations as well as nuclear wave-packet dynamics in the adiabatic and diabatic representation are performed. N2 - Im Rahmen quantenmechanischer Rechnungen werden die Eigenschaften nicht-adiabatischer Kopplungen in einem kleinen Modellsystem, dem Shin-Metiu Modell, untersucht. Die Fallunterscheidung zwischen adiabatischen und nicht-adiabatischen Prozessen wird durch eine Parameterisierung der Elektronen-Kernwechselwirkung realisiert. Dies ermöglicht den Vergleich zwischen korrelierter und unkorrelierter Elektronen-Kernbewegung. Innerhalb dieser zwei Extrema werden die Eigenfunktionen betrachtet und der Einfluss nicht-adiabtischer Kopplungen auf diese analysiert. Es wird gezeigt, dass im Fall einer schwachen Kopplung die Eigenfunktionen als adiabatisches Produkt dargestellt werden können, soweit die adiabatischen elektronischen Eigenfunktionen voneinander entkoppelt sind und unterschiedlichen elektronischen Charakter besitzen. Auf der anderen Seite sind die adiabatischen elektronischen Eigenfunktionen und die Vibrationseigenfunktionen im Bereich einer starken Kopplung miteinander gekoppelt, und es zeigt sich, dass die Eigenfunktionen in der diabatischen Darstellung eine zur adiabatischen äquivalente, aber intuitivere Beschreibung darstellen. Anhand dieser Ergebnisse wird eine Diabatisierung und ein Vergleich zwischen exakter Elektronen-Kernpropagation und der Propagation im diabatischen Bild durchgeführt. Dieser Vergleich ist in sehr guter Übereinstimmung und zeigt, dass der Ansatz der Diabatisierung für unkorrelierte Elektronen-Kernbewegungen hinreichend ist und gleichzeitig klassifiziert er die Wellepacket-dynamik im Bereich starker Kopplungen als diabatisch. Die theoretischen Untersuchungen des eindimensionalen Modells werden auf spektroskopische Übergänge erweitert, welche lineare und nichtlineare System-Feld Wechselwirkungen beinhalten. Ein Vergleich zwischen zweidimensionalen Spektren bezüglich schwach und stark gekoppelter Elektronen-Kern Dynamik zeigt, dass im Fall schwacher Kopplungen, die Spektren durch analoge Rechnungen im Rahmen der Born-Oppenheimer Näherung reproduzierbar sind. Es zeigt sich, dass diejenigen Teile des Spektrums, welche auf gleiche Weise nicht reproduzierbar sind, elektronisch gemischten Zuständen, aufgrund starker nicht-adiabtischer Kopplungen, zuzuordnen sind. Die Möglichkeit, das System zwischen schwacher und starker Kopplung zu variieren, erlaubt es Vibrationskohärenzen und elektronischen Kohärenzen in zweidimensionalen Spektren zu analysieren. Dazu werden die zweidimensionalen Spektren als Funktion der Populationszeit betrachtet. Es ergibt sich, dass im Fall schwacher Kopplungen die Kohärenzen während der Populationszeit Vibrationskohärenzen zugeordnet werden können. Im Gegensatz dazu ergeben sich im Bereich starker Kopplungen, aufgrund des gemischten elektronischen Charakters der Zustände, Kohärenzen vibronischer Art. Als weitere Methode wird die Degenerierte-Vier-Wellen-Mischen Spektroskopie (FWM) untersucht. Diese ist in der Lage Grundzustandsdynamiken und Dynamiken im angeregten Zustand separat zu verfolgen. Sowohl für negative als auch für positive Verzögerungszeiten werden die zwei verschiedenen Kopplungsszenarien untersucht und der Zusammenbruch dieser Methode bezüglich der nicht möglichen Trennung der Grundzustandsdynamik und Dynamik im angeregten Zustand innerhalb der adiabatischen Beschreibung betrachtet. Als weiterer Aspekt, wird die quantenmechanische und klassische Zeitentwicklung der gekoppelten Elektronen-Kernbewegung im vollständigen Phasenraum für verschiedene Kopplungsstärken verglichen. Im Fall schwacher Kopplung stimmt im Kurzzeitverhalten die klassische Berechung mit der quantenmechanischen gut überein. Dies kann auch im Fall starker Kopplungen gezeigt werden, was die weitere Schlussfolgerung zulässt, dass die Dynamik im Bereich starker Kopplungen hauptsächlich in einem diabatischen Zustand stattfindet. Das zeigt, dass die klassische Bewegung sehr ähnlich zu der diabatischen quantenmechanischen Bewegung verläuft. Als Konsequenz reproduziert eine klassische Bewegung im vollständigen Phasenraum eine quantenmechanische, bei der nicht-adiabatische Kopplungen stark involviert sind. Als letzte Betrachtung des eindimensionalen Shin-Metiu Modells, wird der Elektronenfluss im schwach gekoppelten Fall untersucht und der numerisch exakt berechnete Fluss mit dem in der Born-Oppenheimer Näherung verglichen. Innerhalb der üblichen Definition verschwindet der Elektronenfluss im Rahmen der Born-Oppenheimer Näherung. Durch die Verwendung der Kontinuitätsgleichung für den Elektronenfluss ergibt sich jedoch ein nicht-verschwindender Elektronenfluss. Weiter wurde ein Reflektionsprinzip hergeleitet, welches den Elektronenfluss auf den Kernfluss abbildet und umgekehrt. Zum Abschluss der Untersuchungen des eindimensionalen Shin-Metiu Modells wird das System auf zwei Dimensionen erweitert. Dabei zeigt sich, dass die adiabatischen Potentialflächen des Modells eine typische 'Mexican-hat' Topologie aufweist. Daraus ergibt sich, dass es möglich ist das System auf einen vibronischen (Jahn-Teller) Hamiltonian zurückzuführen. Im Zuge dessen wird das zweidimensionale System hinsichtlich der exakten Elektronen-Kerndynamik, sowie der Dynamik in den adiabatischen und diabatischen Anschauungen betrachtet. Die durchgeführten Rechnungen zeigen, dass das Passieren eines Wellenpaketes durch eine Konische Durchschneidung als eine diabatische Dynamik klassifiziert werden kann, wobei ein effizienter adiabatischer Populations-transfer stattfindet. Dieser Prozess kann sehr gut im diabatischen Bild reproduziert werden. Des Weiteren wird eine Wellenpaketdynamik um eine Konische Durchschneidung herum betrachtet und als adiabatische Dynamik klassifiziert. Der interessante Aspekt der geometrischen Phase, die mit dem Umrunden einer Konischen Durchschneidung assoziiert ist, wird mit der Rotation der elektronischen Wellenfunktion verknüpft. Zusätzlich wird hier das Auftreten der geometrische Phase in Autokorrelationsfunktionen und den daraus abgeleiteten Spektren charakterisiert. Die geometrische Phase wird zusätzlich als Mischungswinkel der Transformation zwischen dem diabatischen und adiabatischen Bild explizit berechnet. Zusammenfassend zeigen die Rechnugen an den verwendeten Modellsystemen viele fundamentale Aspekte der korrelierten Elektronen-Kerndynamik, obwohl sie auf lediglich zwei Partikel begrenzt sind. KW - Theoretische Chemie KW - Quantentheorie KW - Shin-Metiu Model KW - Coupled Electron-Nuclear Dynamics KW - Conical Intersection KW - Geometric Phase KW - Two-dimensional Spectroscopy KW - Electron Flux KW - Theoretical Chemistry Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-161512 ER - TY - JOUR A1 - Kreinberg, Sören A1 - Grbešić, Tomislav A1 - Strauß, Max A1 - Carmele, Alexander A1 - Emmerling, Monika A1 - Schneider, Christian A1 - Höfling, Sven A1 - Porte, Xavier A1 - Reitzenstein, Stephan T1 - Quantum-optical spectroscopy of a two-level system using an electrically driven micropillar laser as a resonant excitation source JF - Light: Science & Applications N2 - Two-level emitters are the main building blocks of photonic quantum technologies and are model systems for the exploration of quantum optics in the solid state. Most interesting is the strict resonant excitation of such emitters to control their occupation coherently and to generate close to ideal quantum light, which is of utmost importance for applications in photonic quantum technology. To date, the approaches and experiments in this field have been performed exclusively using bulky lasers, which hinders the application of resonantly driven two-level emitters in compact photonic quantum systems. Here we address this issue and present a concept for a compact resonantly driven single-photon source by performing quantum-optical spectroscopy of a two-level system using a compact high-β microlaser as the excitation source. The two-level system is based on a semiconductor quantum dot (QD), which is excited resonantly by a fiber-coupled electrically driven micropillar laser. We dress the excitonic state of the QD under continuous wave excitation, and trigger the emission of single photons with strong multi-photon suppression (g\(^{(2)}\)(0)=0.02) and high photon indistinguishability (V = 57±9%) via pulsed resonant excitation at 156 MHz. These results clearly demonstrate the high potential of our resonant excitation scheme, which can pave the way for compact electrically driven quantum light sources with excellent quantum properties to enable the implementation of advanced quantum communication protocols. KW - near-infrared spectroscopy KW - photonic devices KW - semiconductor lasers KW - single photons and quantum effects Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-229802 VL - 7 ER - TY - JOUR A1 - Krishna, Anand A1 - Peter, Sebastian M. T1 - Questionable research practices in student final theses – prevalence, attitudes, and the role of the supervisor’s perceived attitudes JF - PLoS ONE N2 - Although questionable research practices (QRPs) and p-hacking have received attention in recent years, little research has focused on their prevalence and acceptance in students. Students are the researchers of the future and will represent the field in the future. Therefore, they should not be learning to use and accept QRPs, which would reduce their ability to produce and evaluate meaningful research. 207 psychology students and fresh graduates provided self-report data on the prevalence and predictors of QRPs. Attitudes towards QRPs, belief that significant results constitute better science or lead to better grades, motivation, and stress levels were predictors. Furthermore, we assessed perceived supervisor attitudes towards QRPs as an important predictive factor. The results were in line with estimates of QRP prevalence from academia. The best predictor of QRP use was students’ QRP attitudes. Perceived supervisor attitudes exerted both a direct and indirect effect via student attitudes. Motivation to write a good thesis was a protective factor, whereas stress had no effect. Students in this sample did not subscribe to beliefs that significant results were better for science or their grades. Such beliefs further did not impact QRP attitudes or use in this sample. Finally, students engaged in more QRPs pertaining to reporting and analysis than those pertaining to study design. We conclude that supervisors have an important function in shaping students’ attitudes towards QRPs and can improve their research practices by motivating them well. Furthermore, this research provides some impetus towards identifying predictors of QRP use in academia. KW - supervisors KW - psychology KW - human learning KW - learning KW - careers KW - scientists KW - psychometrics KW - psychologists Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-177296 VL - 13 IS - 8 ER - TY - JOUR A1 - Knödler, Maren A1 - Körfer, Justus A1 - Kunzmann, Volker A1 - Trojan, Jörg A1 - Daum, Severin A1 - Schenk, Michael A1 - Kullmann, Frank A1 - Schroll, Sebastian A1 - Behringer, Dirk A1 - Stahl, Michael A1 - Al-Batran, Salah-Eddin A1 - Hacker, Ulrich A1 - Ibach, Stefan A1 - Lindhofer, Horst A1 - Lordick, Florian T1 - Randomised phase II trial to investigate catumaxomab (anti-EpCAM × anti-CD3) for treatment of peritoneal carcinomatosis in patients with gastric cancer JF - British Journal of Cancer N2 - Background Peritoneal carcinomatosis (PC) represents an unfavourable prognostic factor for patients with gastric cancer (GC). Intraperitoneal treatment with the bispecific and trifunctional antibody catumaxomab (EpCAM, CD3), in addition to systemic chemotherapy, could improve elimination of PC. Methods This prospective, randomised, phase II study investigated the efficacy of catumaxomab followed by chemotherapy (arm A, 5-fluorouracil, leucovorin, oxaliplatin, docetaxel, FLOT) or FLOT alone (arm B) in patients with GC and PC. Primary endpoint was the rate of macroscopic complete remission (mCR) of PC at the time of second diagnostic laparoscopy/laparotomy prior to optional surgery. Results Median follow-up was 52 months. Out of 35 patients screened, 15 were allocated to arm A and 16 to arm B. mCR rate was 27% in arm A and 19% in arm B (p = 0.69). Severe side effects associated with catumaxomab were nausea, infection, abdominal pain, and elevated liver enzymes. Median progression-free (6.7 vs. 5.4 months, p = 0.71) and overall survival (13.2 vs. 13.0 months, p = 0.97) were not significantly different in both treatment arms. Conclusions Addition of catumaxomab to systemic chemotherapy was feasible and tolerable in advanced GC. Although the primary endpoint could not be demonstrated, results are promising for future investigations integrating intraperitoneal immunotherapy into a multimodal treatment strategy. KW - cancer immunotherapy KW - gastric cancer Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-325938 VL - 119 ER - TY - JOUR A1 - Anelli, Viviana A1 - Ordas, Anita A1 - Kneitz, Susanne A1 - Sagredo, Leonel Munoz A1 - Gourain, Victor A1 - Schartl, Manfred A1 - Meijer, Annemarie H. A1 - Mione, Marina T1 - Ras-Induced miR-146a and 193a Target Jmjd6 to Regulate Melanoma Progression JF - Frontiers in Genetics N2 - Ras genes are among the most commonly mutated genes in human cancer; yet our understanding of their oncogenic activity at the molecular mechanistic level is incomplete. To identify downstream events that mediate ras-induced cellular transformation in vivo, we analyzed global microRNA expression in three different models of Ras-induction and tumor formation in zebrafish. Six microRNAs were found increased in Ras-induced melanoma, glioma and in an inducible model of ubiquitous Ras expression. The upregulation of the microRNAs depended on the activation of the ERK and AKT pathways and to a lesser extent, on mTOR signaling. Two Ras-induced microRNAs (miR-146a and 193a) target Jmjd6, inducing downregulation of its mRNA and protein levels at the onset of Ras expression during melanoma development. However, at later stages of melanoma progression, jmjd6 levels were found elevated. The dynamic of Jmjd6 levels during progression of melanoma in the zebrafish model suggests that upregulation of the microRNAs targeting Jmjd6 may be part of an anti-cancer response. Indeed, triple transgenic fish engineered to express a microRNA-resistant Jmjd6 from the onset of melanoma have increased tumor burden, higher infiltration of leukocytes and shorter melanoma-free survival. Increased JMJD6 expression is found in several human cancers, including melanoma, suggesting that the up-regulation of Jmjd6 is a critical event in tumor progression. The following link has been created to allow review of record GSE37015: http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?token=jjcrbiuicyyqgpc&acc=GSE37015. KW - zebrafish KW - cancer models KW - microRNA KW - Jmjd6 KW - ras KW - melanoma KW - miR-146a KW - miR-193a Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-196963 SN - 1664-8021 VL - 9 IS - 675 ER - TY - JOUR A1 - Rosenstock, Julio A1 - Perkovic, Vlado A1 - Alexander, John H. A1 - Cooper, Mark E. A1 - Marx, Nikolaus A1 - Pencina, Michael J. A1 - Toto, Robert D. A1 - Wanner, Christoph A1 - Zinman, Bernard A1 - Baanstra, David A1 - Pfarr, Egon A1 - Mattheus, Michaela A1 - Broedl, Uli C. A1 - Woerle, Hans-Jürgen A1 - George, Jyothis T. A1 - von Eynatten, Maximilian A1 - McGuire, Darren K. T1 - Rationale, design, and baseline characteristics of the CArdiovascular safety and Renal Microvascular outcomE study with LINAgliptin - (CARMELINA®): a randomized, double-blind, placebo-controlled clinical trial in patients with type 2 diabetes and high cardio-renal risk JF - Cardiovascular Diabetology N2 - Background: Cardiovascular (CV) outcome trials in type 2 diabetes (T2D) have underrepresented patients with chronic kidney disease (CKD), leading to uncertainty regarding their kidney efficacy and safety. The CARMELINA (R) trial aims to evaluate the effects of linagliptin, a DPP-4 inhibitor, on both CV and kidney outcomes in a study population enriched for cardio-renal risk. Methods: CARMELINA (R) is a randomized, double-blind, placebo-controlled clinical trial conducted in 27 countries in T2D patients at high risk of CV and/or kidney events. Participants with evidence of CKD with or without CV disease and HbA1c 6.5-10.0% (48-86 mmol/mol) were randomized 1:1 to receive linagliptin once daily or matching placebo, added to standard of care adjusted according to local guidelines. The primary outcome is time to first occurrence of CV death, non-fatal myocardial infarction, or non-fatal stroke. The key secondary outcome is a composite of time to first sustained occurrence of end-stage kidney disease, >= 40% decrease in estimated glomerular filtration rate (eGFR) from baseline, or renal death. CV and kidney events are prospectively adjudicated by independent, blinded clinical event committees. CARMELINA (R) was designed to continue until at least 611 participants had confirmed primary outcome events. Assuming a hazard ratio of 1.0, this provides 90% power to demonstrate non-inferiority of linagliptin versus placebo within the pre-specified non-inferiority margin of 1.3 at a one-sided a-level of 2.5%. If non-inferiority of linagliptin for the primary outcome is demonstrated, then its superiority for both the primary outcome and the key secondary outcome will be investigated with a sequentially rejective multiple test procedure. Results: Between July 2013 and August 2016, 6980 patients were randomized and took >= 1 dose of study drug (40.6, 33.1, 16.9, and 9.4% from Europe, South America, North America, and Asia, respectively). At baseline, mean +/- SD age was 65.8 +/- 9.1 years, HbA1c 7.9 +/- 1.0%, BMI 31.3 +/- 5.3 kg/m(2), and eGFR 55 +/- 25 mL/min/1.73 m(2). A total of 5148 patients (73.8%) had prevalent kidney disease (defined as eGFR < 60 mL/min/1.73 m(2) or macroalbuminuria [albumin-to-creatinine ratio > 300 mg/g]) and 3990 patients (57.2%) had established CV disease with increased albuminuria; these characteristics were not mutually exclusive. Microalbuminuria (n = 2896 [41.5%]) and macroalbuminuria (n = 2691 [38.6%]) were common. Conclusions: CARMELINA (R) will add important information regarding the CV and kidney disease clinical profile of linagliptin by including an understudied, vulnerable cohort of patients with T2D at highest cardio-renal risk. KW - Diabetes mellitus KW - type 2 KW - Cardiovascular diseases KW - Diabetic nephropathies KW - Dipeptidyl-peptidase IV inhibitors KW - Linagliptin KW - Clinical trial KW - phase IV KW - Research design KW - Treatment outcome Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-226996 VL - 17 ER - TY - THES A1 - Gupta, Shishir Kumar T1 - Re-annotation of Camponotus floridanus Genome and Characterization of Innate Immunity Transcriptome Responses to Bacterial Infections T1 - Re-Annotation des Camponotus floridanus Genoms und Charakterisieren der unspezifischen Immun-Transkriptom-Antwort auf bakterielle Infektionen N2 - The sequencing of several ant genomes within the last six years open new research avenues for understanding not only the genetic basis of social species but also the complex systems such as immune responses in general. Similar to other social insects, ants live in cooperative colonies, often in high densities and with genetically identical or closely related individuals. The contact behaviours and crowd living conditions allow the disease to spread rapidly through colonies. Nevertheless, ants can efficiently combat infections by using diverse and effective immune mechanisms. However, the components of the immune system of carpenter ant Camponotus floridanus and also the factors in bacteria that facilitate infection are not well understood. To form a better view of the immune repository and study the C. floridanus immune responses against the bacteria, experimental data from Illumina sequencing and mass-spectrometry (MS) data of haemolymph in normal and infectious conditions were analysed and integrated with the several bioinformatics approaches. Briefly, the tasks were accomplished in three levels. First, the C. floridanus genome was re-annotated for the improvement of the existing annotation using the computational methods and transcriptomics data. Using the homology based methods, the extensive survey of literature, and mRNA expression profiles, the immune repository of C. floridanus were established. Second, large-scale protein-protein interactions (PPIs) and signalling network of C. floridanus were reconstructed and analysed and further the infection induced functional modules in the networks were detected by mapping of the expression data over the networks. In addition, the interactions of the immune components with the bacteria were identified by reconstructing inter-species PPIs networks and the interactions were validated by literature. Third, the stage-specific MS data of larvae and worker ants were analysed and the differences in the immune response were reported. Concisely, all the three omics levels resulted to multiple findings, for instance, re-annotation and transcriptome profiling resulted in the overall improvement of structural and functional annotation and detection of alternative splicing events, network analysis revealed the differentially expressed topologically important proteins and the active functional modules, MS data analysis revealed the stage specific differences in C. floridanus immune responses against bacterial pathogens. Taken together, starting from re-annotation of C. floridanus genome, this thesis provides a transcriptome and proteome level characterization of ant C. floridanus, particularly focusing on the immune system responses to pathogenic bacteria from a biological and a bioinformatics point of view. This work can serve as a model for the integration of omics data focusing on the immuno-transcriptome of insects. N2 - Das Sequenzieren mehrerer Ameisen Genome innerhalb der letzten 6 Jahre eröffnete neue Forschungswege, um nicht nur die genetische Grundlade sozialer Arten, sondern auch komplexere Systeme wie generelle Immunantworten zu untersuchen. Ähnlich zu anderen sozialen Insekten leben Ameisen in Kolonien, oft mit einer sehr hohen Dichte mit genetisch übereinstimmenden oder nah verwandten Individuen. Das Sozialverhalten und die engen Lebensumstände führen dazu, dass sich Krankheiten in Kolonien schnell ausbreiten können. Dennoch können Ameisen mit der Nutzung ihrer komplexen Immunsystemmechanismen Infektionen effektiv abwehren. Die Zusammensetzung des Immunsystems der Rossameise Camponotus floridanus (C. floridanus) und die Faktoren der Bakterien, welche die Infektionen verursachen sind noch nicht gut untersucht. Um einen besseren Überblick über die verschiedenen Gruppen der Immun- Gene zu bekommen und um die Immunantworten von C. floridanus gegen Bakterien zu untersuchen haben wir experimentelle Daten der Illumina Sequenzierung und der Massenspektrometrie (MS) aus der Hämolymphe unter normalen und unter infizierten Bedingungen analysiert und über verschiedene bioinformatische Ansätzen zusammengefasst. Die Aufgabe wurde in drei Ebenen unterteilt. Zuerst wurde das Genom von C. floridanus neu annotiert, die Verbesserung der existierenden Annotation wurde rechnerisch und mit Transkriptom- Daten erreicht. Mit der Nutzung der auf Homologie- basierenden Methoden, der umfassenden Überprüfung der Literatur und der Nutzung von mRNA Genexpressionsanalysen wurde für C. floridanus dieser Überblick erstellt. Anschließend wurden größere Protein- Protein- Interaktionen (PPI) und Signalnetzwerke von C. floridanus rekonstruiert und analysiert und daraufhin wurden die Infektions-induzierten funktionalen Module im Netzwerk entdeckt und die Expressionsdaten über Netzwerke abgebildet. Zusätzlich wurden die Anteile der Immunantwort bei der Interaktion mit Bakterien mittels der Rekonstruktion von zwischenartlichen PPI Netzwerken identifiziert und diese Interaktionen wurden mit Literaturwerten validiert. In der dritten und letzten Phase wurden Daten der Stadium- spezifischen Massenspektrometrie (MS) von Larven- und Arbeiterameisen analysiert und die Unterschiede in den Immunantworten aufgezeichnet. Zusammengefasst lieferten alle drei Omiks- Ebenen jeweils viele Ergebnisse, zum Beispiel führte die neue Annotation und das Transkription- Profil zu einer generellen Verbesserung der strukturellen und funktionalen Annotation und dem Aufspüren von alternativen Splicing- Ereignissen. Die Netzwerkanalyse deckte die unterschiedlich exprimierten topologisch wichtigen Proteine und die aktiven funktionalen Module auf, die Analyse der MS- Daten erbrachte Ergebnisse über die Stadium- spezifischen Unterschiede in der Immunantwort von C. floridanus gegen bakterielle Pathogene. Rundum, beginnend mit der neuen Annotation des Genoms von C. floridanus stellt diese Arbeit eine Transkriptom- und Protein Charakterisierung der Ameise C. floridanus dar. Besonders lag der Fokus auf die Antworten des Immunsystems auf Pathogene Bakterien aus biologischer- und bioinformatischer Sicht. Diese Arbeit kann als Vorlage für die Integration von Omiks Daten dienen, welche sich auf die Immun- Transkriptome von Insekten fokussieren. KW - Camponotus floridanus KW - Genom KW - Camponotus floridanus KW - Innate immunity KW - Transcriptome KW - Interactome KW - Host-pathogen interactions KW - Host-endosymbiont interactions KW - Re-annotation KW - Gene-prediction KW - Ants KW - Comparative genomics KW - Transkription KW - Immunreaktion KW - Re-Annotation KW - Immun-Transkriptom Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-140168 ER - TY - JOUR A1 - Düking, Peter A1 - Fuss, Franz Konstantin A1 - Holmberg, Hans-Christer A1 - Sperlich, Billy T1 - Recommendations for assessment of the reliability, sensitivity, and validity of data provided by wearable sensors designed for monitoring physical activity JF - JMIR Mhealth and Uhealth N2 - Although it is becoming increasingly popular to monitor parameters related to training, recovery, and health with wearable sensor technology (wearables), scientific evaluation of the reliability, sensitivity, and validity of such data is limited and, where available, has involved a wide variety of approaches. To improve the trustworthiness of data collected by wearables and facilitate comparisons, we have outlined recommendations for standardized evaluation. We discuss the wearable devices themselves, as well as experimental and statistical considerations. Adherence to these recommendations should be beneficial not only for the individual, but also for regulatory organizations and insurance companies. KW - internet of things KW - activity tracker KW - data mining KW - load management KW - physical activity KW - smartwatch Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-176202 VL - 6 IS - 4 ER - TY - THES A1 - Slawig, Anne T1 - Reconstruction methods for the frequency-modulated balanced steady-state free precession MRI-sequence T1 - Rekonstruktionsmethoden für die frequenz-modulierte balanced steady-state free precession MRT-Sequenz N2 - This work considered the frequency-modulated balanced steady-state free precession (fm-bSSFP) sequence as a tool to provide banding free bSSFP MR images. The sequence was implemented and successfully applied to suppress bandings in various in vitro and in vivo examples. In combination with a radial trajectory it is a promising alternative for standard bSSFP applications. First, two specialized applications were shown to establish the benefits of the acquisition strategy in itself. In real time cardiac imaging, it was shown that the continuous shift in frequency causes a movement of the bandings across the FOV. Thus, no anatomical region is constantly impaired, and a suitable timeframe can be found to examine all important structures. Furthermore, a combination of images with different artifact positions, similar to phase-cycled acquisitions is possible. In this way, fast, banding-free imaging of the moving heart was realized. Second, acquisitions with long TR were shown. While standard bSSFP suffers from increasing incidence of bandings with higher TR values, the frequency-modulated approach provided banding free images, regardless of the TR. A huge disadvantage of fm-bSSFP, in combination with the radial trajectory, is the decrease in signal intensity. In this work a specialized reconstruction method, the multifrequency reconstruction for frequency-modulated bSSFP (Muffm), was established, which successfully compensated that phenomena. The application of Muffm to several anatomical sites, such as inner ear, legs and cardiac acquisitions, proofed the advantageous SNR of the reconstruction. Furthermore, fm-bSSFP was applied to the clinically highly relevant task of water-fat separation. Former approaches of a phase-sensitive separation procedure in combination with standard bSSFP showed promising results but failed in cases of high inhomogeneity or high field strengths where banding artifacts become a major issue. The novel approach of using the fm-bSSFP acquisition strategy with the separation approach provided robust, reliable images of high quality. Again, losses in signal intensity could be regained by Muffm, as both approaches are completely compatible. Opposed to conventional banding suppression techniques, like frequency-scouts or phase-cycling, all reconstruction methods established in this work rely on a single radial acquisition, with scan times similar to standard bSSFP scans. No prolonged measurement times occur and patient time in the scanner is kept as short as possible, improving patient comfort, susceptibility to motion or physiological noise and cost of one scan. All in all, the frequency-modulated acquisition in combination with specializes reconstruction methods, leads to a completely new quality of images with short acquisition times. N2 - In dieser Arbeit wird eine Modifikation der balanced steady-state free precession (bSSFP) Sequenz betrachtet. Die frequenzmodulierte bSSFP-Sequenz (fm-bSSFP) kann die sonst typischen Band-Artefakte in bSSFP-MR-Bildern verhindern. Die Sequenz wurde im Rahmen der Arbeit am MR-Scanner implementiert und erfolgreich in verschiedenen in-vitro- und in-vivo-Beispielen angewendet. In Kombination mit einer radialen Trajektorie erwies es sich als eine vielversprechende Alternative für alle Standard-bSSFP Anwendungen. Zuerst wurden zwei spezialisierte Anwendungen gezeigt, um die Vorteile der Akquisitionsstrategie an sich darzustellen. Am Beispiel der Echtzeit-Herzbildgebung konnte mit Hilfe der kontinuierlichen Frequenzverschiebung eine Bewegung der Bänder über das FOV erzeugt werden. Somit wird keine anatomische Region ständig von Artefakten überlagert und für jeden Bereich kann ein geeigneter Zeitrahmen gefunden werden, um die wichtigen Strukturen darzustellen und zu untersuchen. Darüber hinaus ist eine Kombination von Bildern mit verschiedenen Artefaktpositionen möglich, ähnlich zu mehreren Aufnahmen mit verschiedenen Phasenzyklen. Auf diese Weise wurde eine schnelle Bildgebung des sich bewegenden Herzens ohne Bandartefakte realisiert. Zusätzlich wurden Aufnahmen mit langen Repetitionszeiten (TR) untersucht. Während in der Standard-bSSFP die Häufigkeit von Bandartefakten mit steigendem TR-Wert zunimmt, lieferte der frequenzmodulierte Ansatz Banding-freie Bilder unabhängig vom TR. Ein großer Nachteil von fm-bSSFP in Kombination mit der radialen Trajektorie ist der Verlust von Signalintensität bei der Rekonstruktion. In dieser Arbeit wurde eine spezielle Rekonstruktionsmethode namens Muffm (mulitfrequency reconstruction for frequency-modulated bSSFP) etabliert, die diesen Verlust erfolgreich kompensieren kann. Die Anwendung von Muffm an verschiedenen anatomischen Strukturen, wie Innenohr, Bein und Herzaufnahmen, bestätigte das vorteilhafte Signal-zu-Rausch-Verhältnis, dass durch die spezielle Rekonstruktion gewonnen werden kann. Darüber hinaus wurde die fm-bSSFP auf die klinisch interessante Wasser-Fett-Trennung angewandt. Frühere Ansätze eines phasenempfindlichen Trennverfahrens in Kombination mit Standard-bSSFP zeigten vielversprechende Ergebnisse, scheiterten jedoch in Fällen hoher Inhomogenität oder hoher Feldstärken an den auftretenden Bandartefakten. Der neue Ansatz, diesen Separationsalgorithmus mit der fm-bSSFP-Akquisitionsstrategie zu verbinden, lieferte robuste, zuverlässige Bilder von hoher Qualität. Auch hier konnten entstehende Verluste in der Signalintensität durch Muffm zurückgewonnen werden, da beide Ansätze vollständig kompatibel sind. Im Gegensatz zu herkömmlichen Bandunterdrückungstechniken, wie Frequenz-Scouts oder die Aufnahme mehrerer Bilder mit verschiedenen Phasenzyklen, beruhen alle in dieser Arbeit etablierten Rekonstruktionsverfahren auf einer einzigen radialen Aufnahme. Die Messzeiten sind daher identisch zur Aufnahme einer Standard-bSSFP Messung. Das Verfahren ermöglicht eine deutliche Verkürzung der Aufenthaltsdauer im Scanner bei einer gleichzeitigen Garantie ein artefaktfreies Bild zu erhalten. Damit ist es insbesondere für Patienten von Vorteil, die unter Platzangst oder sonstigen Beschwerden leiden, die ein langes Stillliegen erschweren. Außerdem werden Bewegungsartefakte, physiologisches Rauschen und nicht zuletzt die Kosten eines Scans minimiert. Insgesamt bietet die frequenzmodulierte bSSFP Aufnahme in Kombination mit spezialisierten Rekonstruktionsverfahren neue Möglichkeiten zur schnellen Aufnahme von Bildern ohne Bandartefakte. KW - Kernspintomografie KW - Magnetic resonance imaging KW - MRI KW - MRT KW - bSSFP KW - Rekonstruktion KW - reconstruction KW - frequency modulation KW - water fat separation KW - Wasser Fett Trennung KW - balanced steady state free precession Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-162871 ER - TY - JOUR A1 - Wegert, Jenny A1 - Vokuhl, Christian A1 - Collord, Grace A1 - Del Castillo Velasco-Herrera, Martin A1 - Farndon, Sarah J. A1 - Guzzo, Charlotte A1 - Jorgensen, Mette A1 - Anderson, John A1 - Slater, Olga A1 - Duncan, Catriona A1 - Bausenwein, Sabrina A1 - Streitenberger, Heike A1 - Ziegler, Barbara A1 - Furtwängler, Rhoikos A1 - Graf, Norbert A1 - Stratton, Michael R. A1 - Campbell, Peter J. A1 - Jones, David TW A1 - Koelsche, Christian A1 - Pfister, Stefan M. A1 - Mifsud, William A1 - Sebire, Neil A1 - Sparber-Sauer, Monika A1 - Koscielniak, Ewa A1 - Rosenwald, Andreas A1 - Gessler, Manfred A1 - Behjati, Sam T1 - Recurrent intragenic rearrangements of EGFR and BRAF in soft tissue tumors of infants JF - Nature Communications N2 - Soft tissue tumors of infancy encompass an overlapping spectrum of diseases that pose unique diagnostic and clinical challenges. We studied genomes and transcriptomes of cryptogenic congenital mesoblastic nephroma (CMN), and extended our findings to five anatomically or histologically related soft tissue tumors: infantile fibrosarcoma (IFS), nephroblastomatosis, Wilms tumor, malignant rhabdoid tumor, and clear cell sarcoma of the kidney. A key finding is recurrent mutation of EGFR in CMN by internal tandem duplication of the kinase domain, thus delineating CMN from other childhood renal tumors. Furthermore, we identify BRAF intragenic rearrangements in CMN and IFS. Collectively these findings reveal novel diagnostic markers and therapeutic strategies and highlight a prominent role of isolated intragenic rearrangements as drivers of infant tumors. KW - cancer KW - genetics Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-233446 VL - 9 ER - TY - THES A1 - Pörner, Frank T1 - Regularization Methods for Ill-Posed Optimal Control Problems T1 - Regularisierungsverfahren für schlecht gestellte Optimalsteuerungsprobleme N2 - This thesis deals with the construction and analysis of solution methods for a class of ill-posed optimal control problems involving elliptic partial differential equations as well as inequality constraints for the control and state variables. The objective functional is of tracking type, without any additional \(L^2\)-regularization terms. This makes the problem ill-posed and numerically challenging. We split this thesis in two parts. The first part deals with linear elliptic partial differential equations. In this case, the resulting solution operator of the partial differential equation is linear, making the objective functional linear-quadratic. To cope with additional control constraints we introduce and analyse an iterative regularization method based on Bregman distances. This method reduces to the proximal point method for a specific choice of the regularization functional. It turns out that this is an efficient method for the solution of ill-posed optimal control problems. We derive regularization error estimates under a regularity assumption which is a combination of a source condition and a structural assumption on the active sets. If additional state constraints are present we combine an augmented Lagrange approach with a Tikhonov regularization scheme to solve this problem. The second part deals with non-linear elliptic partial differential equations. This significantly increases the complexity of the optimal control as the associated solution operator of the partial differential equation is now non-linear. In order to regularize and solve this problem we apply a Tikhonov regularization method and analyse this problem with the help of a suitable second order condition. Regularization error estimates are again derived under a regularity assumption. These results are then extended to a sparsity promoting objective functional. N2 - Diese Arbeit beschäftigt sich mit der Konstruktion und Analyse von Lösungsverfahren für schlecht gestellte Steuerungsprobleme. Die Nebenbedingungen sind in der Form von elliptischen partiellen Differentialgleichungen, sowie Ungleichungsrestriktionen für die Steuerung und den zugehörigen Zustand gegeben. Das Zielfunktional besteht aus einem Tracking-Type-Term ohne zusätzliche \(L^2\)-Regularisierungsterme. Dies führt dazu, dass das Optimalsteuerungsproblem schlecht gestellt ist, was die numerische Berechnung einer Lösung erschwert. Diese Arbeit ist in zwei Teile aufgeteilt. Der erste Teil beschäftigt sich mit linearen elliptischen partiellen Differentialgleichungen. In diesem Fall ist der zugehörige Lösungsoperator der partiellen Differentialgleichung linear und das Zielfunktional linear-quadratisch. Um die zusätzlichen Steuerungsrestriktionen zu behandeln, betrachten wir ein iteratives Verfahren welches auf einer Regularisierung mit Bregman-Abständen basiert. Für eine spezielle Wahl des Regularisierungsfunktionals vereinfacht sich dieses Verfahren zu dem Proximal-Point-Verfahren. Die Analyse des Verfahrens zeigt, dass es ein effizientes und gut geeignetes Verfahren ist, um schlecht gestellte Optimalsteuerungsprobleme zu lösen. Mithilfe einer Regularitätsannahme werden Konvergenzraten für den Regularisierungsfehler hergeleitet. Diese Regularitätsannahme ist eine Kombination einer Source-Condition sowie einer struktuellen Annahme an die aktiven Mengen. Wenn zusätzlich Zustandsrestriktionen vorhanden sind, wird zur Lösung eine Kombination aus dem Augmented Lagrange Ansatz sowie einer Tikhonov-Regularisierung angewendet. Der zweite Teil dieser Arbeit betrachtet nicht-lineare partielle Differentialgleichungen. Dies erhöht die Komplexität des Optimalsteuerungsproblem signifikant, da der Lösungsoperator der partiellen Differentialgleichung nun nicht-linear ist. Zur Lösung wird eine Tikhonov-Regularisierung betrachtet. Mithilfe einer geeigneten Bedingung zweiter Ordnung wird dieses Verfahren analysiert. Auch hier werden Konvergenzraten mithilfe einer Regularitätsannahme bestimmt. Anschließend werden diese Methoden auf ein Funktional mit einem zusätzlichen \(L^1\)-Term angewendet. N2 - Ill-posed optimization problems appear in a wide range of mathematical applications, and their numerical solution requires the use of appropriate regularization techniques. In order to understand these techniques, a thorough analysis is inevitable. The main subject of this book are quadratic optimal control problems subject to elliptic linear or semi-linear partial differential equations. Depending on the structure of the differential equation, different regularization techniques are employed, and their analysis leads to novel results such as rate of convergence estimates. KW - Optimale Steuerung KW - Regularisierung KW - Elliptische Differentialgleichung KW - optimal control KW - partial differential equation KW - Bregman distance KW - regularization KW - error estimate Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-163153 SN - 978-3-95826-086-3 (Print) SN - 978-3-95826-087-0 (Online) N1 - Parallel erschienen als Druckausgabe in Würzburg University Press, ISBN 978-3-95826-086-3, 26,90 EUR. PB - Würzburg University Press CY - Würzburg ET - 1. Auflage ER - TY - JOUR A1 - Rhodes, David A. A1 - Chen, Hung-Chang A1 - Williamson, James C. A1 - Hill, Alfred A1 - Yuan, Jack A1 - Smith, Sam A1 - Rhodes, Harriet A1 - Trowsdale, John A1 - Lehner, Paul J. A1 - Herrmann, Thomas A1 - Eberl, Matthias T1 - Regulation of Human γδ T Cells by BTN3A1 Protein Stability and ATP-Binding Cassette Transporters JF - Frontiers in Immunology N2 - Activation of human Vγ9/Vδ2 T cells by “phosphoantigens” (pAg), the microbial metabolite (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate (HMB-PP) and the endogenous isoprenoid intermediate isopentenyl pyrophosphate, requires expression of butyrophilin BTN3A molecules by presenting cells. However, the precise mechanism of activation of Vγ9/Vδ2 T cells by BTN3A molecules remains elusive. It is not clear what conformation of the three BTN3A isoforms transmits activation signals nor how externally delivered pAg accesses the cytosolic B30.2 domain of BTN3A1. To approach these problems, we studied two HLA haplo-identical HeLa cell lines, termed HeLa-L and HeLa-M, which showed marked differences in pAg-dependent stimulation of Vγ9/Vδ2 T cells. Levels of IFN-γ secretion by Vγ9/Vδ2 T cells were profoundly increased by pAg loading, or by binding of the pan-BTN3A specific agonist antibody CD277 20.1, in HeLa-M compared to HeLa-L cells. IL-2 production from a murine hybridoma T cell line expressing human Vγ9/Vδ2 T cell receptor (TCR) transgenes confirmed that the differential responsiveness to HeLa-L and HeLa-M was TCR dependent. By tissue typing, both HeLa lines were shown to be genetically identical and full-length transcripts of the three BTN3A isoforms were detected in equal abundance with no sequence variation. Expression of BTN3A and interacting molecules, such as periplakin or RhoB, did not account for the functional variation between HeLa-L and HeLa-M cells. Instead, the data implicate a checkpoint controlling BTN3A1 stability and protein trafficking, acting at an early time point in its maturation. In addition, plasma membrane profiling was used to identify proteins upregulated in HMB-PP-treated HeLa-M. ABCG2, a member of the ATP-binding cassette (ABC) transporter family was the most significant candidate, which crucially showed reduced expression in HeLa-L. Expression of a subset of ABC transporters, including ABCA1 and ABCG1, correlated with efficiency of T cell activation by cytokine secretion, although direct evidence of a functional role was not obtained by knockdown experiments. Our findings indicate a link between members of the ABC protein superfamily and the BTN3A-dependent activation of γδ T cells by endogenous and exogenous pAg. KW - butyrophilins KW - T cells KW - phosphoantigens KW - mevalonate pathway KW - ABCG2 KW - NRF2 Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-197054 SN - 1664-3224 VL - 9 IS - 662 ER - TY - THES A1 - Krishna, Anand T1 - Regulatory Focus Theory and Information Processing - A Series of Exploratory Studies T1 - Die Theorie des regulatorischen Fokus im Zusammenhang mit Informationsverarbeitung - eine Reihe explorativer Studien N2 - Regulatory focus (RF) theory (Higgins, 1997) states that individuals follow different strategic concerns when focusing on gains (promotion) rather than losses (prevention). Applying the Reflective-Impulsive Model (RIM, Strack & Deutsch, 2004), this dissertation investigates RF’s influence on basic information processing, specifically semantic processing (Study 1), semantic (Study 2) and affective (Study 3) associative priming, and basic reflective operations (Studies 4-7). Study 1 showed no effect of RF on pre-activation of RF-related semantic concepts in a lexical decision task (LDT). Study 2 indicated that primes fitting a promotion focus improve performance in a LDT for chronically promotion-focused individuals, but not chronically prevention-focused individuals. However, the latter performed better when targets fit their focus. Stronger affect and arousal after processing valent words fitting an RF may explain this pattern. Study 3 showed some evidence for stronger priming effects for negative primes in a bona-fide pipeline task (Fazio et al., 1995) for chronically prevention-focused participants, while also providing evidence that situational prevention focus insulates individuals from misattributing the valence of simple primes. Studies 4-7 showed that a strong chronic prevention focus leads to greater negation effects for valent primes in an Affect Misattribution Procedure (Payne et al., 2005), especially when it fits the situation. Furthermore, Study 6 showed that these effects result from stronger weighting of negated valence rather than greater ease in negation. Study 7 showed that the increased negation effect is independent of time pressure. Broad implications are discussed, including how RF effects on basic processing may explain higher-order RF effects. N2 - Die Theorie des regulatorischen Fokus (RF; Higgins, 1997) besagt, dass Individuen sich an unterschiedlichen strategischen Überlegungen orientieren, wenn sie sich auf Gewinne (Annäherung) statt Verluste (Vermeidung) konzentrieren. Unter Anwendung des Reflexiv-Impulsiven Modells (RIM; Strack & Deutsch, 2004) untersucht diese Dissertation den Einfluss des RF auf grundlegende Informationsverarbeitung, insbesondere semantische Verarbeitung (Studie 1), semantische (Studie 2) und affektive (Studie 3) assoziative Bahnung, und grundlegende reflexive Operationen (Studien 4-7). Studie 1 zeigte keinen Effekt des RF auf Präaktivierung von RF-relevanten Konzepten in einer lexikalischen Entscheidungsaufgabe (LEA). Studie 2 deutete darauf hin, dass Bahnungsreize, die zu einem Annäherungsfokus passen, die Leistung in einer LEA bei Individuen mit starkem chronischen Annäherungsfokus, aber nicht bei Individuen mit starkem chronischen Vermeidungsfokus verbessern. Letztere schnitten jedoch besser ab, wenn die Zielreize zu ihrem Fokus passten. Stärkerer Affekt und Anregung nach der Verabeitung valenter Wörter, die zu einem RF passen, könnten dieses Muster erklären. Studie 3 brachte etwas Evidenz dafür, dass negative Bahnungsreize in einer Bona-Fide-Pipeline-Aufgabe (Fazio u.a., 1995) bei Individuen mit chronischem Vermeidungsfokus stärkere Bahnungseffekte produzieren. Gleichzeitig lieferte Studie 3 Belege, dass ein situationaler Vermeidungsfokus davor abschirmt, die Valenz von einfachen Bahnungsreizen fehlzuattribuieren. Studien 4-7 zeigten, dass ein starker chronischer Vermeidungsfokus zu stärkeren Negationseffekten in einer Affekt-Misattributionsprozedur (Payne u.a., 2005) führt, vor allem, wenn er zur Situation passt. Darüber hinaus zeigte Studie 6, dass diese Effekte auf eine stärkere Wertung von negierter Valenz und nicht auf erleichterte Negation zurückzuführen sind. Studie 7 zeigte, dass die Verstärkung der Negation unabhängig von Zeitdruck ist. Breite Implikationen werden diskutiert, unter anderem wie RF-Effekte bei der grundlegenden Informationsverarbeitung RF-Effekte auf höheren Ebenen erklären können. KW - Motivation KW - Sozialpsychologie KW - Informationsverarbeitung KW - Semantic cognition KW - Propositional processing KW - Regulatory focus KW - Semantische Verarbeitung KW - Propositionale Verarbeitung KW - Regulatorischer Fokus KW - Motivationspsychologie KW - Experiment / Sozialpsychologie Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-163365 ER - TY - JOUR A1 - Richert, Elisabeth A1 - Koinzer, Stefan A1 - Tode, Jan A1 - Schlott, Kerstin A1 - Brinkmann, Ralf A1 - Hillenkamp, Jost A1 - Klettner, Alexa A1 - Roider, Johann T1 - Release of Different Cell Mediators During Retinal Pigment Epithelium Regeneration Following Selective Retina Therapy JF - Investigative Ophthalmology & Visual Science N2 - PURPOSE. To investigate the effect of selective retina therapy (SRT) on the release of AMD-relevant cell mediators, such as matrix metalloproteinases (MMPs), VEGF, and pigment epithelium derived factor (PEDF) using different laser spot sizes and densities. METHODS. Porcine RPE-choroid explants were treated with a pulsed 532 nm Nd:YAG laser using (1) large spot sizes, (2) small spot sizes with a high-density (hd) treatment, and (3) small spot sizes with a low-density (1d) treatment. Explains were cultivated in modified Ussing chambers. RPE regeneration and RPE cell death were investigated by calcein-AM staining and immunofluorescence. The MMP release was examined via zymography and immunofluorescence. VEGF and PEDF secretion was analyzed by ELISA. RESULTS. During pigment epithelium regeneration (PER), mitosis and RPE cell migration were observed. Four days after SRT (large spot size) the content of active MMP2 increased significantly (P < 0.01). Hd treatment with small spot sizes resulted also in an increase of active MMP2 (P < 0.05). In immunofluorescence explants showed a localized expression of MMP2 within the healing lesions after irradiation. The PEDF level increased significantly (P = 0.01) after SRT with large spot sizes. VEGF secretion decreased significantly (P < 0.05) following SRT with large spot sizes and with hd treatment of small spot sizes. CONCLUSIONS. SRT induces a cytokine profile, which may improve the flux across Brach's membrane, slows down progression of early AMD by RPE regeneration, and inhibits the formation of choroidal neovascularization. The cytokine release depends on the size and density of applied laser spots. KW - age-related macular degeneration KW - matrix metalloproteases KW - pigment epithelium derived factor KW - retinal pigment epithelium KW - selective retina therapy KW - vascular endothelial growth factor Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-226161 VL - 59 IS - 3 ER - TY - JOUR A1 - Zielewska-Büttner, Katarzyna A1 - Heurich, Marco A1 - Müller, Jörg A1 - Braunisch, Veronika T1 - Remotely Sensed Single Tree Data Enable the Determination of Habitat Thresholds for the Three-Toed Woodpecker (Picoides tridactylus) JF - Remote Sensing N2 - Forest biodiversity conservation requires precise, area-wide information on the abundance and distribution of key habitat structures at multiple spatial scales. We combined airborne laser scanning (ALS) data with color-infrared (CIR) aerial imagery for identifying individual tree characteristics and quantifying multi-scale habitat requirements using the example of the three-toed woodpecker (Picoides tridactylus) (TTW) in the Bavarian Forest National Park (Germany). This bird, a keystone species of boreal and mountainous forests, is highly reliant on bark beetles dwelling in dead or dying trees. While previous studies showed a positive relationship between the TTW presence and the amount of deadwood as a limiting resource, we hypothesized a unimodal response with a negative effect of very high deadwood amounts and tested for effects of substrate quality. Based on 104 woodpecker presence or absence locations, habitat selection was modelled at four spatial scales reflecting different woodpecker home range sizes. The abundance of standing dead trees was the most important predictor, with an increase in the probability of TTW occurrence up to a threshold of 44–50 dead trees per hectare, followed by a decrease in the probability of occurrence. A positive relationship with the deadwood crown size indicated the importance of fresh deadwood. Remote sensing data allowed both an area-wide prediction of species occurrence and the derivation of ecological threshold values for deadwood quality and quantity for more informed conservation management. KW - deadwood KW - standing deadwood KW - dead tree KW - snags KW - three-toed woodpecker (Picoides tridactylus) KW - habitat suitability model (HSM) KW - habitat requirements KW - airborne laser scanning (ALS) KW - CIR aerial imagery Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-197565 SN - 2072-4292 VL - 10 IS - 12 ER - TY - JOUR A1 - Lotz, C. A1 - Kiesewetter, L. A1 - Schmid, F. F. A1 - Hansmann, J. A1 - Walles, H. A1 - Groeber-Becker, F. T1 - Replacing the Draize eye test: impedance spectroscopy as a 3R method to discriminate between all GHS categories for eye irritation JF - Scientific Reports N2 - Highly invasive animal based test procedures for risk assessment such as the Draize eye test are under increasing criticism due to poor transferability for the human organism and animal-welfare concerns. However, besides all efforts, the Draize eye test is still not completely replaced by alternative animal-free methods. To develop an in vitro test to identify all categories of eye irritation, we combined organotypic cornea models based on primary human cells with an electrical readout system that measures the impedance of the test models. First, we showed that employing a primary human cornea epithelial cell based model is advantageous in native marker expression to the primary human epidermal keratinocytes derived models. Secondly, by employing a non-destructive measuring system based on impedance spectroscopy, we could increase the sensitivity of the test system. Thereby, all globally harmonized systems categories of eye irritation could be identified by repeated measurements over a period of 7 days. Based on a novel prediction model we achieved an accuracy of 78% with a reproducibility of 88.9% to determine all three categories of eye irritation in one single test. This could pave the way according to the 3R principle to replace the Draize eye test. KW - biological models KW - electrical and electronic engineering KW - regenerative medicine KW - tissue engineering KW - toxicology Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-177492 VL - 8 IS - 15049 ER - TY - JOUR A1 - Kraus, Michael A1 - Grimm, Clemens A1 - Seibel, Jürgen T1 - Reversibility of a Point Mutation Induced Domain Shift: Expanding the Conformational Space of a Sucrose Phosphorylase JF - Scientific Reports N2 - Despite their popularity as enzyme engineering targets structural information about Sucrose Phosphorylases remains scarce. We recently clarified that the Q345F variant of Bifidobacterium adolescentis Sucrose Phosphorylase is able to accept large polyphenolic substrates like resveratrol via a domain shift. Here we present a crystal structure of this variant in a conformation suitable for the accommodation of the donor substrate sucrose in excellent agreement with the wild type structure. Remarkably, this conformation does not feature the previously observed domain shift which is therefore reversible and part of a dynamic process rather than a static phenomenon. This crystallographic snapshot completes our understanding of the catalytic cycle of this useful variant and will allow for a more rational design of further generations of Sucrose Phosphorylase variants. KW - biocatalysis KW - X-ray crystallography Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-224845 VL - 8 ER - TY - JOUR A1 - Kügel, Jens A1 - Karolak, Michael A1 - Krönlein, Andreas A1 - Serrate, David A1 - Bode, Matthias A1 - Sangiovanni, Giorgio T1 - Reversible magnetic switching of high-spin molecules on a giant Rashba surface JF - npj Quantum Materials N2 - The quantum mechanical screening of a spin via conduction electrons depends sensitively on the environment seen by the magnetic impurity. A high degree of responsiveness can be obtained with metal complexes, as the embedding of a metal ion into an organic molecule prevents intercalation or alloying and allows for a good control by an appropriate choice of the ligands. There are therefore hopes to reach an “on demand” control of the spin state of single molecules adsorbed on substrates. Hitherto one route was to rely on “switchable” molecules with intrinsic bistabilities triggered by external stimuli, such as temperature or light, or on the controlled dosing of chemicals to form reversible bonds. However, these methods constrain the functionality to switchable molecules or depend on access to atoms or molecules. Here, we present a way to induce bistability also in a planar molecule by making use of the environment. We found that the particular “habitat” offered by an antiphase boundary of the Rashba system BiAg2 stabilizes a second structure for manganese phthalocyanine molecules, in which the central Mn ion moves out of the molecular plane. This corresponds to the formation of a large magnetic moment and a concomitant change of the ground state with respect to the conventional adsorption site. The reversible spin switch found here shows how we can not only rearrange electronic levels or lift orbital degeneracies via the substrate, but even sway the effects of many-body interactions in single molecules by acting on their surrounding. KW - electronic structure of atoms and molecules KW - magnetic properties and materials KW - surfaces, interfaces and thin films Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-230866 VL - 3 ER - TY - JOUR A1 - Scheib, Ulrike A1 - Broser, Matthias A1 - Constantin, Oana M. A1 - Yang, Shang A1 - Gao, Shiqiang A1 - Mukherjee, Shatanik A1 - Stehfest, Katja A1 - Nagel, Georg A1 - Gee, Christine E. A1 - Hegemann, Peter T1 - Rhodopsin-cyclases for photocontrol of cGMP/cAMP and 2.3 Å structure of the adenylyl cyclase domain JF - Nature Communications N2 - The cyclic nucleotides cAMP and cGMP are important second messengers that orchestrate fundamental cellular responses. Here, we present the characterization of the rhodopsinguanylyl cyclase from Catenaria anguillulae (CaRhGC), which produces cGMP in response to green light with a light to dark activity ratio > 1000. After light excitation the putative signaling state forms with tau = 31 ms and decays with tau = 570 ms. Mutations (up to 6) within the nucleotide binding site generate rhodopsin-adenylyl cyclases (CaRhACs) of which the double mutated YFP-CaRhAC (E497K/C566D) is the most suitable for rapid cAMP production in neurons. Furthermore, the crystal structure of the ligand-bound AC domain (2.25 angstrom) reveals detailed information about the nucleotide binding mode within this recently discovered class of enzyme rhodopsin. Both YFP-CaRhGC and YFP-CaRhAC are favorable optogenetic tools for non-invasive, cell-selective, and spatio-temporally precise modulation of cAMP/cGMP with light. KW - Enzymes KW - Molecular biophysics KW - Molecular neuroscience KW - X-ray crystallography Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-228517 VL - 9 ER - TY - JOUR A1 - Förstner, Konrad U A1 - Reuscher, Carina M A1 - Haberzettl, Kerstin A1 - Weber, Lennart A1 - Klug, Gabriele T1 - RNase E cleavage shapes the transcriptome of Rhodobacter sphaeroides and strongly impacts phototrophic growth JF - Life Science Alliance N2 - Bacteria adapt to changing environmental conditions by rapid changes in their transcriptome. This is achieved not only by adjusting rates of transcription but also by processing and degradation of RNAs. We applied TIER-Seq (transiently inactivating an endoribonuclease followed by RNA-Seq) for the transcriptome-wide identification of RNase E cleavage sites and of 5′ RNA ends, which are enriched when RNase E activity is reduced in Rhodobacter sphaeroides. These results reveal the importance of RNase E for the maturation and turnover of mRNAs, rRNAs, and sRNAs in this guanine-cytosine-rich α-proteobacterium, some of the latter have well-described functions in the oxidative stress response. In agreement with this, a role of RNase E in the oxidative stress response is demonstrated. A remarkably strong phenotype of a mutant with reduced RNase E activity was observed regarding the formation of photosynthetic complexes and phototrophic growth, whereas there was no effect on chemotrophic growth. KW - Rhodobacter sphaeroides KW - phototrophic growth KW - RNase E Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-177139 VL - 1 IS - 4 ER - TY - THES A1 - Sapozhnikova, Kateryna T1 - Robust Stability of Differential Equations with Maximum T1 - Robuste Stabilität von Differenzialgleichungen mit Maximum N2 - In this thesis stability and robustness properties of systems of functional differential equations which dynamics depends on the maximum of a solution over a prehistory time interval is studied. Max-operator is analyzed and it is proved that due to its presence such kind of systems are particular case of state dependent delay differential equations with piecewise continuous delay function. They are nonlinear, infinite-dimensional and may reduce to one-dimensional along its solution. Stability analysis with respect to input is accomplished by trajectory estimate and via averaging method. Numerical method is proposed. N2 - In dieser These werden die Eigenschaften der Stabilität und Robustheit von Systemen funktioneller Differentialgleichungen untersucht, deren Dynamik von einem Maximum in der Lösung eines vergangenen Zeitintervalls abhängt. Der Max-Operator wird analysiert und durch seine Anwesenheit ist bewiesen, dass diese Art von Systemen einen spezifischen Fall von zustandsabhängigen Verzögerungsdifferenzialgleichungen mit stückweiser, kontinuierlicher Verzögerungsfunktion darstellen. Sie sind nicht-linear, unendlich dimensional und entlang ihrer Lösung können sie eindimensional werden. Die Stabilitätsanalyse, unter Berücksichtigung der Eingabe, wird sowohl durch eine Richtungsschätzung, als auch mittels der Durchschnittsmethode durchgeführt. Eine numerische Methode wird vorgeschlagen. KW - Functional differential equations KW - Nonlinear systems KW - Stability KW - Differentialgleichung KW - Nichtlineares System KW - Stabilität Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-173945 ER - TY - THES A1 - Semeniak, Daniela T1 - Role of bone marrow extracellular matrix proteins on platelet biogenesis and function T1 - Die Rolle der extrazellulären Matrixproteine des Knochenmarks auf die Thrombozytenbiogenes und -funktion N2 - Platelets, small anucleated blood cells responsible for hemostasis, interact at sights of injury with several exposed extracellular matrix (ECM) proteins through specific receptors. Ligand binding leads to activation, adhesion and aggregation of platelets. Already megakaryocytes (MKs), the immediate precursor cells in bone marrow (BM), are in constant contact to these ECM proteins (ECMP). The interaction of ECMP with MKs is, in contrast to platelets, less well understood. It is therefore important to study how MKs interact with sinusoids via the underlying ECMP. This thesis addresses three major topics to elucidate these interactions and their role in platelet biogenesis. First, we studied the topology of ECMP within BM and their impact on proplatelet formation (PPF) in vitro. By establishing a four-color immunofluorescence microscopy we localized collagens and other ECMP and determined their degree of contact towards vessels and megakaryocytes (MKs). In in vitro assays we could demonstrate that Col I mediates increased MK adhesion, but inhibits PPF by collagen receptor GPVI. By immunoblot analyses we identified that the signaling events underyling this inhibition are different from those in platelet activation at the Src family kinase level. Second, we determined the degree of MK-ECM interaction in situ using confocal laser scanning microscopy of four-color IF-stained femora and spleen sections. In transgenic mouse models lacking either of the two major collagen receptors we could show that these mice have an impaired association of MKs to collagens in the BM, while the MK count in spleen increased threefold. This might contribute to the overall unaltered platelet counts in collagen receptor-deficient mice. In a third approach, we studied how the equilibrium of ECMP within BM is altered after irradiation. Collagen type IV and laminin-α5 subunits were selectively degraded at the sinusoids, while the matrix degrading protease MMP9 was upregulated in MKs. Platelet numbers decreased and platelets became hyporesponsive towards agonists, especially those for GPVI activation. Taken together, the results indicate that MK-ECM interaction differs substantially from the well-known platelet-ECM signaling. Future work should further elucidate how ECMP can be targeted to ameliorate the platelet production and function defects, especially in patients after BM irradiation. N2 - Thrombozyten, kleine kernlose Zellen, die für die Hämostase verantwortlich sind, interagieren an verletzten Gefäßwänden mit exponierten extrazellulären Matrixproteinen (EZMP) durch Oberflächenrezeptoren. Durch die Ligandenbindung werden die Thrombozyten aktiviert, adhärieren und aggregieren schlussendlich. Schon Megakaryozyten (MKs), die unmittelbaren Vorläuferzellen im Knochenmark (KM), stehen ebenfalls mit EZMP im ständigen Kontakt. Im Gegensatz zur Thrombozyteninteraktion ist die Interaktion der MKs mit EZMP jedoch nicht sehr gut untersucht. Aus diesem Grund ist es wichtig zu verstehen wie MKs mit Sinusoiden durch die darunterliegenden EZMP interagieren. Diese Doktorarbeit beleuchtet dazu drei Hauptthemen, die zu einem besseren Verständnis dieser Interaktion und dessen Rolle in der Thrombozytenbildung beitragen. In einem ersten Themenblock klärten wir die Topologie verschiedener EZMP des Knochenmarks und deren Rolle bei der Proplättchenbildung auf. Durch die Etablierung einer Vierfarben-Immunfluoreszenzmikroskopie, lokalisierten wir verschiedene Kollagene und andere EZMP im KM und bestimmten deren Kontakt zu Gefäßen und MKs. In in vitro-Ansätzen konnten wir demonstrieren, dass Kollagen Typ I eine erhöhte Adhäsion von MKs vermittelt, aber die Proplättchenbildung durch den Kollagenrezeptor GPVI inhibiert. Mittels Immunoblotanalysen identifizierten wir eine Signalkaskade, die von der Thrombozytenaktivierung auf der Ebene der Src family Kinasen abweicht. In einem zweiten Themenkomplex bestimmten wir in situ den Grad an Interaktion von MKs mit EZMP mittels konfokaler Laserscanning-Mikroskopie von vierfach immunfluoreszenzgefärbten Femora- und Milzschnitten. In transgenen Mäusen, denen einer der zwei Hauptkollagenrezeptoren fehlen, konnten wir zeigen, dass MKs dieser Mäuse eine veränderte Assoziation zu Kollagenen im Knochenmark aufweisen, während die MK-Anzahl in der Milz um das Dreifache anstieg. Dies könnte insgesamt zur unbeeinflussten Thrombozytenzahl in diesen Mäusen beitragen. In einem dritten Themenkomplex untersuchten wir wie das Gleichgewicht im Knochenmark nach Bestrahlung beeinflusst ist. Spezifisch Kollagen Typ IV und laminin-α5 waren an den Sinusoiden degradiert, während die Expression der matrixabbauenden Protease MMP-9 in MKs hochreguliert war. Die Thrombozytenzahl sank und sie wurden hyporesponsiv auf Agonisten, speziell auf diejenigen für die GPVI-Aktivierung. Zusammengefasst zeigen die Ergebnisse, dass die Interaktion von MKs mit EZMP sich substantiell von der Thrombozyten-EZMP vermittelten Signaltransduktion unterscheidet. Zukünftige Untersuchungen sollen weiter beleuchten wie EZMP gezielt beeinflusst werden können um Defekte in der Thrombozytenproduktion und –funktion abzumildern, besonders in Patienten nach Bestrahlung. KW - Knochenmark KW - Thrombozyt KW - Extracellular matrix proteins KW - platelet biogenesis KW - Extrazelluläre Matrix KW - Megakaryocytes KW - platelets Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-155857 ER - TY - JOUR A1 - Khan, Muhammad Usman A1 - Pirzadeh, Maryam A1 - Förster, Carola Yvette A1 - Shityakov, Sergey A1 - Shariati, Mohammad Ali T1 - Role of milk-derived antibacterial peptides in modern food biotechnology: their synthesis, applications and future perspectives JF - Biomolecules N2 - Milk-derived antibacterial peptides (ABPs) are protein fragments with a positive influence on the functions and conditions of a living organism. Milk-derived ABPs have several useful properties important for human health, comprising a significant antibacterial effect against various pathogens, but contain toxic side-effects. These compounds are mainly produced from milk proteins via fermentation and protein hydrolysis. However, they can also be produced using recombinant DNA techniques or organic synthesis. This review describes the role of milk-derived ABPs in modern food biotechnology with an emphasis on their synthesis and applications. Additionally, we also discuss the mechanisms of action and the main bioproperties of ABPs. Finally, we explore future perspectives for improving ABP physicochemical properties and diminishing their toxic side-effects. KW - milk proteins KW - bioactive peptide KW - antibacterial activity KW - fermentation KW - protein hydrolysis KW - recombinant DNA KW - peptide synthesis Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-197610 SN - 2218-273X VL - 8 IS - 4 ER - TY - JOUR A1 - Bahmer, Andreas A1 - Gupta, Daya Shankar T1 - Role of Oscillations in Auditory Temporal Processing: A General Model for Temporal Processing of Sensory Information in the Brain? JF - Frontiers in Neuroscience N2 - We review the role of oscillations in the brain and in the auditory system showing that the ability of humans to distinguish changes in pitch can be explained as a precise analysis of temporal information in auditory signals by neural oscillations. The connections between auditory brain stem chopper neurons construct neural oscillators, which discharge spikes at various constant intervals that are integer multiples of 0.4 ms, contributing to the temporal processing of auditory cochlear output. This is subsequently spatially mapped in the inferior colliculus. Electrophysiological measurements of auditory chopper neurons in different species show oscillations with periods which are integer multiples of 0.4 ms. The constant intervals of 0.4 ms can be attributed to the smallest synaptic delay between interconnected simulated chopper neurons. We also note the patterns of similarities between microcircuits in the brain stem and other parts of the brain (e.g., the pallidum, reticular formation, locus coeruleus, oculomotor nuclei, limbic system, amygdala, hippocampus, basal ganglia and substantia nigra), dedicated to the processing of temporal information. Similarities in microcircuits across the brain reflect the importance of one of the key mechanisms in the information processing in the brain, namely the temporal coupling of different neural events via coincidence detection. KW - canonical microcircuits KW - cochlear nucleus KW - locus coerulus KW - limbic system KW - amygdala KW - hippocampus KW - basal ganglia KW - substantia nigra Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-196087 SN - 1662-453X VL - 12 IS - 793 ER - TY - JOUR T1 - Search for \(B\) - \(L\) \(R\)-parity-violating top squarks in root s=13 TeV \({pp}\) collisions with the ATLAS experiment JF - Physical Review D N2 - A search is presented for the direct pair production of the stop, the supersymmetric partner of the top quark, that decays through an R-parity-violating coupling to a final state with two leptons and two jets, at least one of which is identified as a b-jet. The data set corresponds to an integrated luminosity of 36.1 fb(-1) of proton-proton collisions at a center-of-mass energy of root s = 13 TeV, collected in 2015 and 2016 by the ATLAS detector at the LHC. No significant excess is observed over the Standard Model background, and exclusion limits are set on stop pair production at a 95% confidence level. Lower limits on the stop mass are set between 600 GeV and 1.5 TeV for branching ratios above 10% for decays to an electron or muon and a b-quark. KW - Parton Distributions KW - Breaking KW - Extension KW - Neutrino KW - Decay KW - LHC Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-225863 VL - 97 IS - 3 ER - TY - JOUR T1 - Search for \({WW/WZ}\) resonance production in \(lvqq\) final states in \(pp\) collisions at root \(s\)=13 TeV with the ATLAS detector JF - Journal of High Energy Physics N2 - A search is conducted for new resonances decaying into a WW or WZ boson pair, where one W boson decays leptonically and the other W or Z boson decays hadronically. It is based on proton-proton collision data with an integrated luminosity of 36.1 fb(-1) collected with the ATLAS detector at the Large Hadron Collider at a centre-of-mass energy of root s = 13 TeV in 2015 and 2016. The search is sensitive to diboson resonance production via vector-boson fusion as well as quark-antiquark annihilation and gluon-gluon fusion mechanisms. No significant excess of events is observed with respect to the Standard Model backgrounds. Several benchmark models are used to interpret the results. Limits on the production cross section are set for a new narrow scalar resonance, a new heavy vector-boson and a spin-2 Kaluza-Klein graviton. KW - Hadron-Hadron scattering (experiments) KW - ++ KW - HIGGS Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-226787 VL - 42 ER - TY - JOUR T1 - Search for a heavy Higgs boson decaying into a \(Z\) boson and another heavy Higgs boson in the \({llbb}\) final state in \({pp}\) collisions at root \(s\)=13 TeV with the ATLAS detector JF - Physics Letters B N2 - A search for a heavy neutral Higgs boson, A, decaying into a Z boson and another heavy Higgs boson, H, is performed using a data sample corresponding to an integrated luminosity of 36.1 fb(-1) from proton-proton collisions at root s = 13 TeV recorded in 2015 and 2016 by the ATLAS detector at the Large Hadron Collider. The search considers the Z boson decaying to electrons or muons and the H boson into a pair of b-quarks. No evidence for the production of an A boson is found. Considering each production process separately, the 95% confidence-level upper limits on the pp -> A -> ZH production cross-section times the branching ratio H -> bb are in the range of 14-830 fb for the gluon-gluon fusion process and 26-570 fb for the b-associated process for the mass ranges 130-700 GeV of the H boson and 230-800 GeV of the A boson. The results are interpreted in the context of two-Higgs-doublet models. (C) 2018 Published by Elsevier B.V. This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). Funded by SCOAP(3). KW - Hadron Colliders KW - Parton Distributions KW - MASS Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-226098 VL - 783 ER - TY - JOUR T1 - Search for a new heavy gauge-boson resonance decaying into a lepton and missing transverse momentum in 36 fb\(^{-1}\) of \({pp}\) collisions at root s=13 TeV with the ATLAS experiment JF - The European Physical Journal C N2 - The results of a search for new heavy W' bosons decaying to an electron or muon and a neutrino using proton-proton collision data at a centre-of-mass energy of root s = 13 TeV are presented. The dataset was collected in 2015 and 2016 by the ATLAS experiment at the Large Hadron Collider and corresponds to an integrated luminosity of 36.1 fb(-1). As no excess of events above the Standard Model prediction is observed, the results are used to set upper limits on the W' boson cross-section times branching ratio to an electron or muon and a neutrino as a function of the W' mass. Assuming a W' boson with the same couplings as the Standard Model W boson, W' masses below 5.1 TeV are excluded at the 95% confidence level. KW - Cross-Section KW - Symmetry KW - Events KW - QCD KW - EW Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-220869 VL - 78 IS - 401 ER - TY - JOUR T1 - Search for a Structure in the B-s(0) π\(^{±}\) Invariant Mass Spectrum with the ATLAS Experiment JF - Physical Review Letters N2 - A search for the narrow structure, X(5568), reported by the DO Collaboration in the decay sequence X -> B-s(0) pi +/-, B-s(0) -> J/psi phi, is presented. The analysis is based on a data sample recorded with the ATLAS detector at the LHC corresponding to 4.9 fb(-1) of pp collisions at 7 TeV and 19.5 fb(-1)at 8 TeV. No significant signal was found. Upper limits on the number of signal events, with properties corresponding to those reported by DO, and on the A production rate relative to B-s(0) mesons, rho x, were determined at 95% confidence level. The results are N(X) < 382 and rho x <0.015 for B-s(0) mesons with transverse momenta above 10 GeV and N(X) < 356 and rho(x) < 0.016 for transverse momenta above 15 GeV. Limits are also set for potential B-s(0) pi(+) resonances in the mass range 5550 to 5700 MeV. KW - Mass Spectrum KW - Parton Distributions KW - Decay sequence KW - Analysis KW - MASS KW - Hadron colliders KW - Exotic mesons Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-226539 VL - 120 ER - TY - JOUR T1 - Search for an invisibly decaying Higgs boson or dark matter candidates produced in association with a Z boson in \({pp}\) collisions at root s=13 TeV with the ATLAS detector JF - Physics Letters B N2 - A search for an invisibly decaying Higgs boson or dark matter candidates produced in association with a leptonically decaying Z boson in proton-proton collisions at root s = 13 TeV is presented. This search uses 36.1 fb(-1) of data collected by the ATLAS experiment at the Large Hadron Collider. No significant deviation from the expectation of the Standard Model backgrounds is observed. Assuming the Standard Model ZH production cross-section, an observed (expected) upper limit of 67% (39%) at the 95% confidence level is set on the branching ratio of invisible decays of the Higgs boson with mass m(H) = 125 GeV. The corresponding limits on the production cross-section of the ZH process with the invisible Higgs boson decays are also presented. Furthermore, exclusion limits on the dark matter candidate and mediator masses are reported in the framework of simplified dark matter models. (c) 2017 The Author(s). Published by Elsevier B.V. KW - Distributions KW - Models Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-225947 VL - 776 IS - 1 ER - TY - JOUR T1 - Search for dark matter produced in association with bottom or top quarks in root s=13 TeV \({pp}\) collisions with the ATLAS detector JF - European Physical Journal C N2 - A search for weakly interacting massive dark matter particles produced in association with bottom or top quarks is presented. Final states containing third-generation quarks and missing transverse momentum are considered. The analysis uses 36.1 fb(-1) of proton proton collision data recorded by the ATLAS experiment at root s = 13 TeV in 2015 and 2016. No significant excess of events above the estimated backgrounds is observed. The results are interpreted in the framework of simplified models of spin-0 dark-matter mediators. For colour-neutral spin-0 mediators produced in association with top quarks and decaying into a pair of dark matter particles, mediator masses below 50 GeV are excluded assuming a dark-matter candidate mass of 1 GeV and unitary couplings. For scalar and pseudoscalar mediators produced in association with bottom quarks, the search sets limits on the production cross-section of 300 times the predicted rate for mediators with masses between 10 and 50 GeV and assuming a dark-matter mass of 1 GeV and unitary coupling. Constraints on colour-charged scalar simplified models are also presented. Assuming a dark-matter particle mass of 35 GeV, mediator particles with mass below 1.1 TeV are excluded for couplings yielding a dark-matter relic density consistent with measurements. KW - Production Cross-Section KW - Pair Prodution KW - Parton Distributions KW - Hadron Colliders KW - Measuring Masses KW - LHC Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-225937 VL - C 78 IS - 18 ER - TY - JOUR T1 - Search for diboson resonances with boson-tagged jets in \({pp}\) collisions at root S=13 TeV with the ATLAS detector JF - Physics Letters B N2 - Narrow resonances decaying into WW, WZ or ZZ boson pairs are searched for in 36.7 fb(-1) of proton-proton collision data at a centre-of-mass energy of root s = 13 TeV recorded with the ATLAS detector at the Large Hadron Collider in 2015 and 2016. The diboson system is reconstructed using pairs of large-radius jets with high transverse momentum and tagged as compatible with the hadronic decay of high-momentum Wor Zbosons, using jet mass and substructure properties. The search is sensitive to diboson resonances with masses in the range 1.2-5.0 TeV. No significant excess is observed in any signal region. Exclusion limits are set at the 95% confidence level on the production cross section times branching ratio to dibosons for a range of theories beyond the Standard Model. Model-dependent lower limits on the mass of new gauge bosons are set, with the highest limit set at 3.5 TeV in the context of mass-degenerate resonances that couple predominantly to bosons. (c) 2017 The Author(s). Published by Elsevier B.V. KW - Leptons KW - Physics KW - WZ Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-225782 VL - 777 ER - TY - JOUR T1 - Search for doubly charged Higgs boson production in multi-lepton final states with the ATLAS detector using proton-proton collisions at root s=13TeV JF - The European Physical Journal C N2 - A search for doubly charged Higgs bosons with pairs of prompt, isolated, highly energetic leptons with the same electric charge is presented. The search uses a proton-proton collision data sample at a centre-of-mass energy of 13 TeV corresponding to 36.1 fb(-1) of integrated luminosity recorded in 2015 and 2016 by the ATLAS detector at the LHC. This analysis focuses on the decays H-+/-+/- -> e(+/-)e(+/-), H-+/-+/- -> e(+/-)mu(+/-) and H-+/-+/- -> mu(+/-)mu(+/-), fitting the dilepton mass spectra in several exclusive signal regions. No significant evidence of a signal is observed and corresponding limits on the production cross-section and consequently a lower limit on m(H-+/-+/-) are derived at 95% confidence level. With l(+/-)l(+/-) = e(+/-)e(+/-)/mu(+/-)mu(+/-)/e(+/-)mu(+/-), the observed lower limit on the mass of a doubly charged Higgs boson only coupling to left-handed leptons varies from 770 to 870GeV (850GeV expected) for B(H-+/-+/- -> l(+/-)l(+/-)) = 100% and both the expected and observed mass limits are above 450GeV for B(H-+/-+/- -> l(+/-)l(+/-)) = 10% and any combination of partial branching ratios. KW - Cross-Section KW - Symmetry KW - Models KW - LHC Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-225591 VL - 78 IS - 199 ER - TY - JOUR T1 - Search for electroweak production of supersymmetric states in scenarios with compressed mass spectra at root s=13 TeV with the ATLAS detector JF - Physical Review D N2 - A search for electroweak production of supersymmetric particles in scenarios with compressed mass spectra in final states with two low-momentum leptons and missing transverse momentum is presented. This search uses proton-proton collision data recorded by the ATLAS detector at the Large Hadron Collider in 2015-2016, corresponding to 36.1 tb(-1) of integrated luminosity at root s = 13 TeV. Events with same flavor pairs of electrons or muons with opposite electric charge are selected. The data are found to be consistent with the Standard Model prediction. Results are interpreted using simplified models of R-parity conserving supersymmetry in which there is a small mass difference between the masses of the produced supersymmetric particles and the lightest neutralino. Exclusion limits at 95% confidence level are set on next-to-lightest neutralino masses of up to 145 GeV for Higgsino production and 175 GeV for wino production, and slepton masses of up to 190 GeV for pair production of sleptons. In the compressed mass regime, the exclusion limits extend down to mass splittings of 2.5 GeV for Higgsino production, 2 GeV for wino production, and 1 GeV for slepton production. The results are also interpreted in the context of a radiatively-driven natural supersymmetry model with nonuniversal Higgs boson masses. KW - PP Collicions KW - Parton Distributions KW - Gluino Production KW - Measuring Masses KW - Cross-Section KW - ++ KW - Z Boson KW - Energy KW - Squark KW - Extension Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-226707 VL - 97 IS - 5 ER - TY - JOUR T1 - Search for exclusive Higgs and Z boson decays to phi gamma and rho gamma with the ATLAS detector JF - Journal of High Energy Physics N2 - A search for the exclusive decays of the Higgs and Z bosons to a phi or rho meson and a photon is performed with a pp collision data sample corresponding to an integrated luminosity of up to 35.6 fb(-1) collected at root s = 13 TeV with the ATLAS detector at the CERN Large Hadron Collider. These decays have been suggested as a probe of the Higgs boson couplings to light quarks. No significant excess of events is observed above the background, as expected from the Standard Model. Upper limits at 95% confidence level were obtained on the branching fractions of the Higgs boson decays to phi gamma and rho gamma of 4.8 x 10(-4) and 8.8 x 10(-4), respectively. The corresponding 95% confidence level upper limits for the Z boson decays are 0.9 x 10(-6) and 25 x 10(-6) for phi gamma and rho gamma, respectively. KW - Hadron-Hadron scattering (experiments) KW - Mass KW - Hierarchy KW - QCD KW - Higgs physics Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-220717 VL - 127 IS - 7 ER - TY - JOUR T1 - Search for flavour-changing neutral current top-quark decays \(t\) -> \({qZ}\) in proton-proton collisions at root s=13 TeV with the ATLAS detector JF - Journal of High Energy Physics N2 - A search for flavour-changing neutral-current processes in top-quark decays is presented. Data collected with the ATLAS detector from proton-proton collisions at the Large Hadron Collider at a centre-of-mass energy of root s = 13TeV, corresponding to an integrated luminosity of 36.1 fb(-1), are analysed. The search is performed using top-quark pair events, with one top quark decaying through the t -> qZ (q = u, c) flavour-changing neutral-current channel, and the other through the dominant Standard Model mode t -> bW. Only Z boson decays into charged leptons and leptonic W boson decays are considered as signal. Consequently, the final-state topology is characterized by the presence of three isolated charged leptons (electrons or muons), at least two jets, one of the jets originating from a b-quark, and missing transverse momentum from the undetected neutrino. The data are consistent with Standard Model background contributions, and at 95% confidence level the search sets observed (expected) upper limits of 1.7 x 10(-4) (2.4 x 10(-4)) on the t -> uZ branching ratio and 2.4 x 10(-4) (3.2 x 10(-4)) on the t -> cZ branching ratio, constituting the most stringent limits to date. KW - Hadron-Hadron scattering (experiments) KW - Parton Distributions KW - ++ KW - Pair-Production KW - Cross-Section KW - Physics KW - Models Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-226114 VL - 176 IS - 7 ER - TY - JOUR T1 - Search for heavy \({ZZ}\) resonances in the l\(^+\)l\(^-\)l\(^+\)l\(^-\) and l\(^+\)l\(^-\) nu(nu)over-bar final states using proton-proton collisions at root s=13 TeV with the ATLAS detector JF - The European Physical Journal C N2 - A search for heavy resonances decaying into a pair of Z bosons leading to l(+) l(-) l(+) l(-) and l(+) l(-) nu(nu) over bar final states, where l stands for either an electron or a muon, is presented. The search uses proton-proton collision data at a centre-of-mass energy of 13 TeV corresponding to an integrated luminosity of 36.1 fb(-1) collected with the ATLAS detector during 2015 and 2016 at the Large Hadron Collider. Different mass ranges for the hypothetical resonances are considered, depending on the final state and model. The different ranges span between 200 and 2000 GeV. The results are interpreted as upper limits on the production cross section of a spin-0 or spin-2 resonance. The upper limits for the spin-0 resonance are translated to exclusion contours in the context of Type-I and Type-II two-Higgs-doublet models, while those for the spin-2 resonance are used to constrain the Randall-Sundrum model with an extra dimension giving rise to spin-2 graviton excitations. KW - Boson KW - Decay KW - Mass KW - Distributions KW - Tauola KW - Tool KW - WZ Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-225421 VL - 78 IS - 293 ER - TY - JOUR T1 - Search for heavy resonances decaying into \({WW}\) in the eνμν final state in \({pp}\) collisions at root s=13 TeV with the ATLAS detector JF - European Physical Journal C N2 - A search for neutral heavy resonances is performed in the WW -> e nu mu nu decay channel using pp collision data corresponding to an integrated luminosity of 36.1 fb(-1), collected at a centre-of-mass energy of 13 TeV by the ATLAS detector at the Large Hadron Collider. No evidence of such heavy resonances is found. In the search for production via the quark-antiquark annihilation or gluon-gluon fusion process, upper limits on sigma(X) x B(X -> WW) as a function of the resonance mass are obtained in the mass range between 200 GeV and up to 5 TeV for various benchmark models: a Higgs-like scalar in different width scenarios, a two-Higgs-doublet model, a heavy vector triplet model, and a warped extra dimensions model. In the vector-boson fusion process, constraints are also obtained on these resonances, as well as on a Higgs boson in the Georgi-Machacek model and a heavy tensor particle coupling only to gauge bosons. KW - Gluon Fusion KW - Higgs KW - Bosons KW - Mass Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-225914 VL - 78 IS - 24 ER - TY - JOUR T1 - Search for heavy resonances decaying into a W or Z boson and a Higgs boson in final states with leptons and b-jets in 36 fb\(^{-1}\) of root s=13 TeV pp collisions with the ATLAS detector JF - Journal of High Energy Physics N2 - A search is conducted for new resonances decaying into a W or Z boson and a 125 GeV Higgs boson in the nu(nu) over barb (b) over bar, l(+/-)nu b (b) over bar, and l(+)l(-)b (b) over bar final states, where l(+/-) = e(+/-) or mu(+/-), in pp collisions at root s = 13 TeV. The data used correspond to a total integrated luminosity of 36.1 fb(-1) collected with the ATLAS detector at the Large Hadron Collider during the 2015 and 2016 data-taking periods. The search is conducted by examining the reconstructed invariant or transverse mass distributions of Wh and Zh candidates for evidence of a localised excess in the mass range of 220 GeV up to 5 TeV. No significant excess is observed and the results are interpreted in terms of constraints on the production cross-section times branching fraction of heavy W' and Z' resonances in heavy-vector-triplet models and the CP-odd scalar boson A in two-Higgs-doublet models. Upper limits are placed at the 95% confidence level and range between 9.0 x 10(-4) pb and 7.3 x 10(-1) pb depending on the model and mass of the resonance. KW - Beyond Standard Model KW - Hadron-Hadron scattering (experiments) Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-225446 VL - 174 IS - 3 ER - TY - JOUR T1 - Search for heavy resonances decaying to a photon and a hadronically decaying \({Z/W/H}\) boson in \(pp\) collisions at root \(s\)=13 TeV with the ATLAS detector JF - Physical Review D N2 - Many extensions of the Standard Model predict new resonances decaying to a Z, W, or Higgs boson and a photon. This paper presents a search for such resonances produced in pp collisions at root s = 13 TeV using a data set with an integrated luminosity of 36.1 fb(-1) collected by the ATLAS detector at the LHC. The Z/W/H bosons are identified through their decays to hadrons. The data are found to be consistent with the Standard Model expectation in the entire investigated mass range. Upper limits are set on the production cross section times branching fraction for resonance decays to Z.W + gamma in the mass range from 1.0 to 6.8 TeV and for the first time into H + gamma in the mass range from 1.0 to 3.0 TeV. KW - Parton Distributions KW - Gamma KW - Electroweak interaction KW - Higgs bosons Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-226079 VL - 98 ER - TY - JOUR T1 - Search for Higgs boson decays into pairs of light (pseudo)scalar particles in the \({γγ jj}\) final state in \({pp}\) collisions at root \(s\)=13 TeV with the ATLAS detector JF - Physics Letters B N2 - This Letter presents a search for exotic decays of the Higgs boson to a pair of new (pseudo) scalar particles, H -> aa, where the a particle has a mass in the range 20-60 GeV, and where one of the a bosons decays into a pair of photons and the other to a pair of gluons. The search is performed in event samples enhanced in vector-boson fusion Higgs boson production by requiring two jets with large invariant mass in addition to the Higgs boson candidate decay products. The analysis is based on the full dataset of pp collisions at root s = 13 TeV recorded in 2015 and 2016 with the ATLAS detector at the CERN Large Hadron Collider, corresponding to an integrated luminosity of 36.7 fb(-1). The data are in agreement with the Standard Model predictions and an upper limit at the 95% confidence level is placed on the production cross section times the branching ratio for the decay H -> aa -> gamma gamma gg. This limit ranges from 3.1 pb to 9.0 pb depending on the mass of the a boson. (C) 2018 The Author. Published by Elsevier B.V. KW - Parton Distributions KW - Higgs boson KW - DECAY KW - Higgs boson decays KW - GAMMA Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-226147 VL - 782 ER - TY - JOUR T1 - Search for Higgs boson decays to beyond-the-Standard-Model light bosons in four-lepton events with the ATLAS detector at root s=13 TeV JF - Journal of High Energy Physics N2 - A search is conducted for a beyond-the-Standard-Model boson using events where a Higgs boson with mass 125 GeV decays to four leptons (l = e or mu). This decay is presumed to occur via an intermediate state which contains one or two on-shell, promptly decaying bosons: H -> ZX/XX -> 4l , where X is a new vector boson Z(d) or pseudoscalar a with mass between 1 and 60 GeV. The search uses pp collision data collected with the ATLAS detector at the LHC with an integrated luminosity of 36.1 fb(-1) at a centre-of-mass energy root s = 13TeV. No significant excess of events above Standard Model background predictions is observed; therefore, upper limits at 95% confidence level are set on model-independent fiducial cross-sections, and on the Higgs boson decay branching ratios to vector and pseudoscalar bosons in two benchmark models. KW - Beyond Standard Model KW - Hadron-Hadron scattering (experiments) KW - Patron Distributions KW - Energies Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-220721 VL - 166 IS - 6 ER - TY - JOUR T1 - Search for High-Mass Resonances Decaying to τν in \(pp\) Collisions at root \(s\)=13 TeV with the ATLAS Detector JF - Physical Review Letters N2 - A search for high-mass resonances decaying to tau nu using proton-proton collisions at root s = 13 TeV produced by the Large Hadron Collider is presented. Only tau-lepton decays with hadrons in the final state are considered. The data were recorded with the ATLAS detector and correspond to an integrated luminosity of 36.1 fb(-1). No statistically significant excess above the standard model expectation is observed; model-independent upper limits are set on the visible tau nu production cross section. Heavy W' bosons with masses less than 3.7 TeV in the sequential standard model and masses less than 2.2-3.8 TeV depending on the coupling in the nonuniversal Go(221) model are excluded at the 95% credibility level. KW - Proton-Proton Collisions KW - Parton Ditributions KW - Cross-Section KW - ++ KW - Lepton KW - Hadron colliders KW - Hypothetical gauge bosons KW - Particle production KW - Extensions of gauge sector Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-226556 VL - 120 ER - TY - JOUR T1 - Search for long-lived charginos based on a disappearing-track signature in pp collisions at root s=13 TeV with the ATLAS detector JF - Journal of High Energy Physics N2 - This paper presents a search for direct electroweak gaugino or gluino pair production with a chargino nearly mass-degenerate with a stable neutralino. It is based on an integrated luminosity of 36.1 fb(-1) of pp collisions at root s = 13 TeV collected by the ATLAS experiment at the LHC. The final state of interest is a disappearing track accompanied by at least one jet with high transverse momentum from initial-state radiation or by four jets from the gluino decay chain. The use of short track segments reconstructed from the innermost tracking layers significantly improves the sensitivity to short chargino lifetimes. The results are found to be consistent with Standard Model predictions. Exclusion limits are set at 95% confidence level on the mass of charginos and gluinos for different chargino lifetimes. For a pure wino with a lifetime of about 0.2 ns, chargino masses up to 460 GeV are excluded. For the strong production channel, gluino masses up to 1.65 TeV are excluded assuming a chargino mass of 460 GeV and lifetime of 0.2 ns. KW - Hadron-Hadron scattering (experiments) KW - Extension KW - Squark Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-220847 VL - 22 IS - 6 ER - TY - JOUR T1 - Search for long-lived, massive particles in events with displaced vertices and missing transverse momentum in root S=13 TeV \({pp}\) collisions with the ATLAS detector JF - Physical Review D N2 - A search for long-lived, massive particles predicted by many theories beyond the Standard Model is presented. The search targets final states with large missing transverse momentum and at least one highmass displaced vertex with five or more tracks, and uses 32.8 fb(-1) of root s = 13 TeV pp collision data collected by the ATLAS detector at the LHC. The observed yield is consistent with the expected background. The results are used to extract 95% C.L. exclusion limits on the production of long-lived gluinos with masses up to 2.37 TeV and lifetimes of O(10(-2)) - O(10) ns in a simplified model inspired by split supersymmetry. KW - Proton-Proton- Collisions KW - Parton Distributions KW - Gluino Production KW - Heavy-Particles KW - Breaking KW - Bosons KW - States KW - Squark KW - Decay KW - Jets Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-225450 VL - 97 IS - 5 ER - TY - JOUR T1 - Search for Low-Mass Dijet Resonances Using Trigger-Level Jets with the ATLAS Detector in \(pp\) Collisions at root \(s\)=13 TeV JF - Physical Review Letters N2 - Searches for dijet resonances with sub-TeV masses using the ATLAS detector at the Large Hadron Collider can be statistically limited by the bandwidth available to inclusive single-jet triggers, whose data-collection rates at low transverse momentum are much lower than the rate from standard model multijet production. This Letter describes a new search for dijet resonances where this limitation is overcome by recording only the event information calculated by the jet trigger algorithms, thereby allowing much higher event rates with reduced storage needs. The search targets low-mass dijet resonances in the range 450-1800 GeV. The analyzed data set has an integrated luminosity of up to 29.3 fb(-1) and was recorded at a center-of-mass energy of 13 TeV. No excesses are found; limits are set on Gaussian-shaped contributions to the dijet mass distribution from new particles and on a model of dark-matter particles with axial-vector couplings to quarks. KW - Distributions KW - Hadron colliders KW - Weakly interacting massive particles KW - Quark & gluon jets KW - Particle dark matter Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-226725 VL - 121 ER - TY - JOUR T1 - Search for new phenomena in events with same-charge leptons and b-jets in pp collisions at √\(s\) = 13 TeV with the ATLAS detector JF - Journal of High Energy Physics N2 - A search for new phenomena in events with two same- charge leptons or three leptons and jets identi fi ed as originating from b - quarks in a data sample of 36.1 fb of pp collisions at ps = 13TeV recorded by the ATLAS detector at the Large Hadron Collider is reported. No signi fi cant excess is found and limits are set on vector- like quark, fourtop- quark, and same- sign top- quark pair production. The observed ( expected) 95% CL mass limits for a vector- like T - and B - quark singlet are mT > 0 : 98 ( 0 : 99) TeV and mB > 1 : 00 ( 1 : 01) TeV respectively. Limits on the production of the vector- like T5=3 - quark are also derived considering both pair and single production; in the former case the lower limit on the mass of the T5=3 - quark is ( expected to be) 1.19 ( 1.21) TeV. The Standard Model fourtop- quark production cross- section upper limit is ( expected to be) 69 ( 29) fb. Constraints are also set on exotic four- top- quark production models. Finally, limits are set on samesign top- quark pair production. The upper limit on uu ! tt production is ( expected to be) 89 ( 59) fb for a mediator mass of 1TeV, and a dark- matter interpretation is also derived, excluding a mediator of 3TeV with a dark- sector coupling of 1.0 and a coupling to ordinary matter above 0.31. KW - Hadron-Hadron scattering (experiments) KW - SUSHI Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-312681 VL - 12 IS - 39 ER - TY - JOUR T1 - Search for new phenomena in high-mass final states with a photon and a jet from \({pp}\) collisions at root s=13 TeV with the ATLAS detector JF - The European Physical Journal C N2 - A search is performed for new phenomena in events having a photon with high transverse momentum and a jet collected in 36.7 fb(-1) of proton-proton collisions at a centre-of-mass energy of root s = 13 TeV recorded with the ATLAS detector at the Large Hadron Collider. The invariant mass distribution of the leading photon and jet is examined to look for the resonant production of new particles or the presence of new high-mass states beyond the Standard Model. No significant deviation from the background-only hypothesis is observed and cross-section limits for generic Gaussian-shaped resonances are extracted. Excited quarks hypothesized in quark compositeness models and high-mass states predicted in quantum black hole models with extra dimensions are also examined in the analysis. The observed data exclude, at 95% confidence level, the mass range below 5.3 TeV for excited quarks and 7.1 TeV (4.4 TeV) for quantum black holes in the Arkani-Hamed-Dimopoulos-Dvali (Randall-Sundrum) model with six (one) extra dimensions. KW - Parton distributions KW - Hierarchy Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-225887 VL - 78 IS - 102 ER - TY - JOUR T1 - Search for new phenomena using the invariant mass distribution of same-flavour opposite-sign dilepton pairs in events with missing transverse momentum in root \(s\)=13 TeV \(pp\) collisions with the ATLAS detector JF - European Physical Journal C N2 - A search for new phenomena in final states containing an e(+)e(-) or m(+)m(-) pair, jets, and large missing transverse momentum is presented. This analysis makes use of proton-proton collision data with an integrated luminosity of 36.1 fb(-1), collected during 2015 and 2016 at a centre of-mass energy Os = 13 TeV with the ATLAS detector at the Large Hadron Collider. The search targets the pair production of supersymmetric coloured particles (squarks or gluinos) and their decays into final states containing an e(+)e(-) or m(+)m(-) pair and the lightest neutralino ((c) over tilde (0)(1)) via one of two next-to-lightest neutralino ((c) over tilde (0)(2)) decay mechanisms: (c) over tilde (0)(2) Z (c) over tilde (0)(1), where the Z boson decays leptonically leading to a peak in the dilepton invariant mass distribution around the Z boson mass; and (c) over tilde (0)(2) l(+)1(-) (c) over tilde (0)(1) with no intermediate l(+)l(-) resonance, yielding a kinematic endpoint in the dilepton invariant mass spectrum. The data are found to be consistent with the Standard Model expectation. Results are interpreted using simplified models, and exclude gluinos and squarks with masses as large as 1.85 and 1.3 TeV at 95% confidence level, respectively. KW - Parton Distributions KW - Gluino Production KW - ++ KW - Extension KW - Energy KW - Squark KW - Supersymmetry KW - Physics KW - Decay Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-226109 VL - 78 ER - TY - JOUR T1 - Search for pair production of Higgs bosons in the \({bb̅bb̅}\) final state using proton-proton collisions at root s=13 TeV with the ATLAS detector JF - Journal of High Energy Physics N2 - A search for Higgs boson pair production in the bbbb final state is carried out with up to 36.1 fb(-1) of LHC proton-proton collision data collected at s=13 TeV with the ATLAS detector in 2015 and 2016. Three benchmark signals are studied: a spin-2 graviton decaying into a Higgs boson pair, a scalar resonance decaying into a Higgs boson pair, and Standard Model non-resonant Higgs boson pair production. Two analyses are carried out, each implementing a particular technique for the event reconstruction that targets Higgs bosons reconstructed as pairs of jets or single boosted jets. The resonance mass range covered is 260-3000 GeV. The analyses are statistically combined and upper limits on the production cross section of Higgs boson pairs times branching ratio to bbbb are set in each model. No significant excess is observed; the largest deviation of data over prediction is found at a mass of 280 GeV, corresponding to 2.3 standard deviations globally. The observed 95% confidence level upper limit on the non-resonant production is 13 times the Standard Model prediction. KW - Hadron-Hadron scattering (experiments) KW - ++ KW - LHC Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-226001 VL - 30 ER - TY - JOUR T1 - Search for pair production of Higgsinos in final states with at least three \(b\)-tagged jets in root \(s\)=13 TeV \(pp\) collisions using the ATLAS detector JF - Physical Review D N2 - A search for pair production of the supersymmetric partners of the Higgs boson (higgsinos (H) over tilde) in gaugemediated scenarios is reported. Each higgsino is assumed to decay to a Higgs boson and a gravitino. Two complementary analyses, targeting high- and low-mass signals, are performed to maximize sensitivity. The two analyses utilize LHC pp collision data at a center-of-mass energy root s = 13 TeV, the former with an integrated luminosity of 36.1 fb(-1) and the latter with 24.3 fb(-1), collected with the ATLAS detector in 2015 and 2016. The search is performed in events containing missing transverse momentum and several energetic jets, at least three of which must be identified as b-quark jets. No significant excess is found above the predicted background. Limits on the cross section are set as a function of the mass of the <(Hover tilde> in simplified models assuming production via mass-degenerate higgsinos decaying to a Higgs boson and a gravitino. Higgsinos with masses between 130 and 230 GeV and between 290 and 880 GeV are excluded at the 95% confidence level. Interpretations of the limits in terms of the branching ratio of the higgsino to a Z boson or a Higgs boson are also presented, and a 45% branching ratio to a Higgs boson is excluded for m(<(Hover tilde>) approximate to 400 GeV. KW - Gluino Production KW - Supersymmetry KW - Extension KW - Squark KW - Predictions KW - Supersymmetric models KW - Hierarchy problem KW - Extensions of Higgs sector Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-226010 VL - 98 ER - TY - JOUR T1 - Search for pair production of up-type vector-like quarks and for four-top-quark events in final states with multiple \(b\)-jets with the ATLAS detector JF - Journal of High Energy Physics N2 - A search for pair production of up-type vector-like quarks (T) with a significant branching ratio into a top quark and either a Standard Model Higgs boson or a Z boson is presented. The same analysis is also used to search for four-top-quark production in several new physics scenarios. The search is based on a dataset of pp collisions at root s = 13TeV recorded in 2015 and 2016 with the ATLAS detector at the CERN Large Hadron Collider and corresponds to an integrated luminosity of 36.1 fb(-1). Data are analysed in the lepton+jets final state, characterised by an isolated electron or muon with high transverse momentum, large missing transverse momentum and multiple jets, as well as the jets+E-T(miss) final state, characterised by multiple jets and large missing transverse momentum. The search exploits the high multiplicity of jets identified as originating from b-quarks, and the presence of boosted, hadronically decaying top quarks and Higgs bosons reconstructed as large-radius jets, characteristic of signal events. No significant excess above the Standard Model expectation is observed, and 95% CL upper limits are set on the production cross sections for the different signal processes considered. These cross-section limits are used to derive lower limits on the mass of a vector-like T quark under several branching ratio hypotheses assuming contributions from T -> Wb, Zt, Ht decays. The 95% CL observed lower limits on the T quark mass range between 0.99TeV and 1.43TeV for all possible values of the branching ratios into the three decay modes considered, significantly extending the reach beyond that of previous searches. Additionally, upper limits on anomalous four-top-quark production are set in the context of an effective field theory model, as well as in an universal extra dimensions model. KW - Beyond Standard Model KW - Hadron-Hadron scattering (experiments) KW - vector-like quarks KW - Parton Distributions KW - ++ KW - Boson KW - Breaking KW - Program KW - Gluon Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-226131 VL - 89 IS - 7 ER - TY - JOUR T1 - Search for photonic signatures of gauge-mediated supersymmetry in 13 TeV \(pp\) collisions with the ATLAS detector JF - Physical Review D N2 - A search is presented for photonic signatures, motivated by generalized models of gauge-mediated supersymmetry breaking. This search makes use of proton-proton collision data at root s = 13 TeV corresponding to an integrated luminosity of 36.1 fb(-1) recorded by the ATLAS detector at the LHC, and it explores models dominated by both strong and electroweak production of supersymmetric partner states. Experimental signatures incorporating an isolated photon and significant missing transverse momentum are explored. These signatures include events with an additional photon or additional jet activity not associated with any specific underlying quark flavor. No significant excess of events is observed above the Standard Model prediction, and 95% confidence-level upper limits of between 0.083 and 0.32 fb are set on the visible cross section of contributions from physics beyond the Standard Model. These results are interpreted in terms of lower limits on the masses of gluinos, squarks, and gauginos in the context of generalized models of gauge-mediated supersymmetry, which reach as high as 2.3 TeV for strongly produced and 1.3 TeV for weakly produced supersymmetric partner pairs. KW - Gluino production KW - Supersymmetric models KW - Hypothetical particle physics models KW - Fortran code KW - Extension KW - Squark KW - Breaking KW - Decays KW - Model KW - Weak Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-226510 VL - 97 ER - TY - JOUR T1 - Search for R-parity-violating supersymmetric particles in multi-jet final states produced in \({p-p}\) collisions at root \(s\)=13 TeV using the ATLAS detector at the LHC JF - Physics Letters B N2 - Results of a search for gluino pair production with subsequent R-parity-violating decays to quarks are presented. This search uses 36.1 fb(-1) of data collected by the ATLAS detector in proton-proton collisions with a centre-of-mass energy of root s = 13 TeV at the LHC. The analysis is performed using requirements on the number of jets and the number of jets tagged as containing a b-hadron as well as a topological observable formed by the scalar sum of masses of large-radius jets in the event. No significant excess above the expected Standard Model background is observed. Limits are set on the production of gluinos in models with the R-parity-violating decays of either the gluino itself (direct decay) or the neutralino produced in the R-parity-conserving gluino decay (cascade decay). In the gluino cascade decay model, gluino masses below 1850 GeV are excluded for 1000 GeV neutralino mass. For the gluino direct decay model, the 95% confidence level upper limit on the cross section times branching ratio varies between 0.80 fb at m((g) over tilde) = 900 GeV and 0.011 fb at m((g) over tilde) = 1800 GeV. (c) 2018 The Author. Published by Elsevier B.V. This is an open access article under the CC BY license. KW - Gluino Production KW - Extension KW - Decay KW - Squark Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-226047 VL - 785 ER - TY - JOUR T1 - Search for squarks and gluinos in final states with jets and missing transverse momentum using 36 fb\(^{-1}\) of root s=13 TeV \({pp}\) collision data with the ATLAS detector JF - Physical Review D N2 - A search for the supersymmetric partners of quarks and gluons (squarks and gluinos) in final states containing hadronic jets and missing transverse momentum, but no electrons or muons, is presented. The data used in this search were recorded in 2015 and 2016 by the ATLAS experiment in root s = 13 TeV proton-proton collisions at the Large Hadron Collider, corresponding to an integrated luminosity of 36.1 fb(-1). The results are interpreted in the context of various models where squarks and gluinos are pair produced and the neutralino is the lightest supersymmetric particle. An exclusion limit at the 95% confidence level on the mass of the gluino is set at 2.03 TeV for a simplified model incorporating only a gluino and the lightest neutralino, assuming the lightest neutralino is massless. For a simplified model involving the strong production of mass-degenerate first-and second-generation squarks, squark masses below 1.55 TeVare excluded if the lightest neutralino is massless. These limits substantially extend the region of supersymmetric parameter space previously excluded by searches with the ATLAS detector. KW - Parton Distributions KW - Decay KW - Weak Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-220835 VL - 97 IS - 11 ER - TY - JOUR T1 - Search for supersymmetry in events with four or more leptons in root s=13 TeV \({pp}\) collisions with ATLAS JF - Physical Review D N2 - Results from a search for supersymmetry in events with four or more charged leptons (electrons, muons and taus) are presented. The analysis uses a data sample corresponding to 36.1 fb(-1) of proton-proton collisions delivered by the Large Hadron Collider at root s = 13 TeV and recorded by the ATLAS detector. Four-lepton signal regions with up to two hadronically decaying taus are designed to target a range of supersymmetric scenarios that can be either enriched in or depleted of events involving the production and decay of a Z boson. Data yields are consistent with Standard Model expectations and results are used to set upper limits on the event yields from processes beyond the Standard Model. Exclusion limits are set at the 95% confidence level in simplified models of general gauge mediated supersymmetry, where Higgsino masses are excluded up to 295 GeV. In R-parity-violating simplified models with decays of the lightest supersymmetric particle to charged leptons, lower limits of 1.46, 1.06, and 2.25 TeV are placed on wino, slepton and gluino masses, respectively. KW - Gluino Production KW - Squark KW - Extension KW - Scale KW - Decay KW - Weak Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-220705 VL - 98 IS - 3 ER - TY - JOUR T1 - Search for supersymmetry in final states with charm jets and missing transverse momentum in 13 TeV \(pp\) collisions with the ATLAS detector JF - Journal of High Energy Physics N2 - A search for supersymmetric partners of top quarks decaying as (t) over tilde (1) -> c (chi) over tilde (0)(1)and supersymmetric partners of charm quarks decaying as (c) over tilde (1) -> c (chi) over tilde (0)(1) where (chi) over tilde (0)(1) is the lightest neutralino, is presented. The search uses 36.1 fb(-1) pp collision data at a centre-of-mass energy of 13 TeV collected by the ATLAS experiment at the Large Hadron Collider and is performed in final states with jets identified as containing charm hadrons. Assuming a 100% branching ratio to c (chi) over tilde (0)(1), top and charm squarks with masses up to 850 GeV are excluded at 95% confidence level for a massless lightest neutralino. For m (t) over tilde (1,(c) over tilde1) - m((chi) over tilde 10)< 100 GeV, top and charm squark masses up to 500 GeV are excluded. KW - Hadron-Hadron scattering (experiments) KW - Parton Distributions KW - Extension KW - Squark KW - Decay Y1 - 2018 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-226752 VL - 09 ER -