TY - JOUR A1 - Bumiller-Bini Hoch, Valéria A1 - Kohler, Ana Flávia A1 - Augusto, Danillo G. A1 - Lobo-Alves, Sara Cristina A1 - Malheiros, Danielle A1 - Cipolla, Gabriel Adelman A1 - Winter Boldt, Angelica Beate A1 - Braun-Prado, Karin A1 - Wittig, Michael A1 - Franke, Andre A1 - Pföhler, Claudia A1 - Worm, Margitta A1 - van Beek, Nina A1 - Goebeler, Matthias A1 - Sárdy, Miklós A1 - Ibrahim, Saleh A1 - Busch, Hauke A1 - Schmidt, Enno A1 - Hundt, Jennifer Elisabeth A1 - Araujo-Souza, Patrícia Savio de A1 - Petzl-Erler, Maria Luiza T1 - Genetic associations and differential mRNA expression levels of host genes suggest a viral trigger for endemic pemphigus foliaceus JF - Viruses N2 - The long search for the environmental trigger of the endemic pemphigus foliaceus (EPF, fogo selvagem) has not yet resulted in any tangible findings. Here, we searched for genetic associations and the differential expression of host genes involved in early viral infections and innate antiviral defense. Genetic variants could alter the structure, expression sites, or levels of the gene products, impacting their functions. By analyzing 3063 variants of 166 candidate genes in 227 EPF patients and 194 controls, we found 12 variants within 11 genes associated with differential susceptibility (p < 0.005) to EPF. The products of genes TRIM5, TPCN2, EIF4E, EIF4E3, NUP37, NUP50, NUP88, TPR, USP15, IRF8, and JAK1 are involved in different mechanisms of viral control, for example, the regulation of viral entry into the host cell or recognition of viral nucleic acids and proteins. Only two of nine variants were also associated in an independent German cohort of sporadic PF (75 patients, 150 controls), aligning with our hypothesis that antiviral host genes play a major role in EPF due to a specific virus–human interaction in the endemic region. Moreover, CCL5, P4HB, and APOBEC3G mRNA levels were increased (p < 0.001) in CD4+ T lymphocytes of EPF patients. Because there is limited or no evidence that these genes are involved in autoimmunity, their crucial role in antiviral responses and the associations that we observed support the hypothesis of a viral trigger for EPF, presumably a still unnoticed flavivirus. This work opens new frontiers in searching for the trigger of EPF, with the potential to advance translational research that aims for disease prevention and treatment. KW - endemic pemphigus foliaceus KW - virus KW - genetic association KW - differential gene expression KW - autoimmune disease KW - environmental factors Y1 - 2022 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-270572 SN - 1999-4915 VL - 14 IS - 5 ER - TY - JOUR A1 - Goettsch, Winfried A1 - Beerenwinkel, Niko A1 - Deng, Li A1 - Dölken, Lars A1 - Dutilh, Bas E. A1 - Erhard, Florian A1 - Kaderali, Lars A1 - Kleist, Max von A1 - Marquet, Roland A1 - Matthijnssens, Jelle A1 - McCallin, Shawna A1 - McMahon, Dino A1 - Rattei, Thomas A1 - Van Rij, Ronald P. A1 - Robertson, David L. A1 - Schwemmle, Martin A1 - Stern-Ginossar, Noam A1 - Marz, Manja T1 - ITN—VIROINF: Understanding (harmful) virus-host interactions by linking virology and bioinformatics JF - Viruses N2 - Many recent studies highlight the fundamental importance of viruses. Besides their important role as human and animal pathogens, their beneficial, commensal or harmful functions are poorly understood. By developing and applying tailored bioinformatical tools in important virological models, the Marie Skłodowska-Curie Initiative International Training Network VIROINF will provide a better understanding of viruses and the interaction with their hosts. This will open the door to validate methods of improving viral growth, morphogenesis and development, as well as to control strategies against unwanted microorganisms. The key feature of VIROINF is its interdisciplinary nature, which brings together virologists and bioinformaticians to achieve common goals. KW - bioinformatic KW - virus KW - virology KW - virus host interaction Y1 - 2021 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-236687 SN - 1999-4915 VL - 13 IS - 5 ER - TY - JOUR A1 - Fuji, Shigeo A1 - Kapp, Markus A1 - Einsele, Hermann T1 - Monitoring of Pathogen-Specific T-Cell Immune Reconstitution after Allogeneic Hematopoietic Stem Cell Transplantation JF - Frontiers in Immunology N2 - The clinical outcome after allogeneic hematopoietic stem cell transplantation (HSCT) has been significantly improved during the last decades with regard to the reduction in organ failure, infection, and severe acute graft-versus-host disease. However, severe complications due to infectious diseases are still one of the major causes of morbidity and mortality after allogeneic HSCT, in particular in patients receiving haploidentical HSCT or cord blood transplant due to a slow and often incomplete immune reconstitution. In order to improve the immune control of pathogens without an increased risk of alloreactivity, adoptive immunotherapy using highly enriched pathogen-specificT cells offers a promising approach. In order to identify patients who are at high risk for infectious diseases, several monitoring assays have been developed with potential for the guidance of immunosuppressive drugs and adoptive immunotherapy in clinical practice. In this article, we aim to give a comprehensive overview regarding current developments of T-cell monitoring techniques focusing on T cells against viruses and fungi. In particular, we will focus on rather simple, fast, non-labor-intensive, cellular assays which could be integrated in routine clinical screening approaches. KW - immune reconstitution KW - virus KW - fungi KW - T cell KW - allogeneic stem cell transplantation Y1 - 2013 U6 - http://nbn-resolving.de/urn/resolver.pl?urn:nbn:de:bvb:20-opus-129250 VL - 4 IS - 276 ER -